RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4004
(319 letters)
>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein fimbrin/plastin
(EF-Hand superfamily) [Cytoskeleton].
Length = 612
Score = 207 bits (528), Expect = 4e-62
Identities = 96/231 (41%), Positives = 131/231 (56%), Gaps = 10/231 (4%)
Query: 22 LQAVHAKSHLLTFTAWCNSHLRKAGT-AIENIEEDFRNGLKLMLLLEVISGETLPKPDRG 80
Q V K TFT W N L G +++ D ++G+KL LLE + + + +
Sbjct: 6 WQKVQKK----TFTKWTNEKLISGGQKEFGDLDTDLKDGVKLAQLLEALQKDNAGEYNET 61
Query: 81 K-MRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE 139
R H + NV+ L+FI KGVKL +IG ++IVDGN K+ LG+IW++I R I I+ E
Sbjct: 62 PETRIHVMENVSGRLEFIKGKGVKLFNIGPQDIVDGNPKLILGLIWSLISRLTIATINEE 121
Query: 140 -EMTAKEGLLLWCQRKTAPYKN-VNVQNFHLSFKDGLAFCALIHRHRPELIDY--HKLSK 195
E+T LLLWC T YK V+ +F S++DGLAF ALIH RP+ +D L K
Sbjct: 122 GELTKHINLLLWCDEDTGGYKPEVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQK 181
Query: 196 DNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAF 246
N N AF+ A K + I R++ ED++N PDER+IMTYVS Y F
Sbjct: 182 KNKALNNFQAFENANKVIGIARLIGVEDIVNVSIPDERSIMTYVSWYIIRF 232
Score = 43.0 bits (101), Expect = 2e-04
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 12/103 (11%)
Query: 32 LTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGE---------TLPKPDRGKM 82
FT W NS I N+ D R+ L L+ L P +
Sbjct: 382 RVFTFWLNSLD--VSPEITNLFGDLRDQLILLQALSKKLMPMTVTHKLVKKQPASGIEEN 439
Query: 83 RFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIW 125
RF N N A+D ++G LV I EI+DG ++ L ++W
Sbjct: 440 RFKAFENENYAVDLGITEGFSLVGIKGLEILDGI-RLKLTLVW 481
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain. The CH domain is
found in both cytoskeletal proteins and signal
transduction proteins. The CH domain is involved in
actin binding in some members of the family. However in
calponins there is evidence that the CH domain is not
involved in its actin binding activity. Most member
proteins have from two to four copies of the CH domain,
however some proteins such as calponin have only a
single copy.
Length = 104
Score = 116 bits (292), Expect = 1e-32
Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Query: 144 KEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKD--NPLQN 201
++ LL W Y + V NF +DGLA CAL+++ RP LID K++K+ + L+N
Sbjct: 1 EKALLRWINEVLGEYGGLPVTNFFEDLRDGLALCALLNKLRPGLIDLKKVNKNRFDKLEN 60
Query: 202 LNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247
LN A + AEK L +P++L+PEDL+ +E+ ++T ++ + F+
Sbjct: 61 LNLALEFAEKKLGVPKVLEPEDLVE--DGNEKLVLTLLAQLFRRFE 104
Score = 90.8 bits (226), Expect = 6e-23
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 33 TFTAWCNSHLRKA-GTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVN 91
W N L + G + N ED R+GL L LL + + K RF K+ N+N
Sbjct: 3 ALLRWINEVLGEYGGLPVTNFFEDLRDGLALCALLNKLRPGLIDLKKVNKNRFDKLENLN 62
Query: 92 KALDFIASK-GVKLVSIGAEEIV-DGNLKMTLGMIWTIILRF 131
AL+F K GV V + E++V DGN K+ L ++ + RF
Sbjct: 63 LALEFAEKKLGVPKV-LEPEDLVEDGNEKLVLTLLAQLFRRF 103
>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which
may be present as a single copy or in tandem repeats
(which increases binding affinity). The CH domain is
found in cytoskeletal and signal transduction proteins,
including actin-binding proteins like spectrin,
alpha-actinin, dystrophin, utrophin, and fimbrin,
proteins essential for regulation of cell shape
(cortexillins), and signaling proteins (Vav).
Length = 107
Score = 102 bits (257), Expect = 2e-27
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDY---HKLSKDNPL 199
KE LL W + Y V + NF KDG+A C L++ P+LID + LS+ L
Sbjct: 2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRL 61
Query: 200 QNLNTAFDVAEKYLDIPR-MLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247
+N+N A + AEK +P D EDL+ DE+ ++ + F
Sbjct: 62 ENINLALNFAEKL-GVPVVNFDAEDLVE--DGDEKLVLGLLWSLIRKFL 107
Score = 92.4 bits (230), Expect = 2e-23
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 33 TFTAWCNSHLRKAG-TAIENIEEDFRNGLKLMLLLEVISGETLPKPD-RGKMRFHKIANV 90
W N L + G I N D ++G+ L LL +S + + K RF ++ N+
Sbjct: 5 ELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENI 64
Query: 91 NKALDFIASKGVKLVSIGAEEIV-DGNLKMTLGMIWTIILRFA 132
N AL+F GV +V+ AE++V DG+ K+ LG++W++I +F
Sbjct: 65 NLALNFAEKLGVPVVNFDAEDLVEDGDEKLVLGLLWSLIRKFL 107
>gnl|CDD|214479 smart00033, CH, Calponin homology domain. Actin binding domains
present in duplicate at the N-termini of spectrin-like
proteins (including dystrophin, alpha-actinin). These
domains cross-link actin filaments into bundles and
networks. A calponin homology domain is predicted in
yeasst Cdc24p.
Length = 101
Score = 92.0 bits (229), Expect = 2e-23
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 33 TFTAWCNSHLRKAG-TAIENIEEDFRNGLKLMLLLEVISGETLPK--PDRGKMRFHKIAN 89
T W NS L + + N D ++G+ L LL +S + K RF KI N
Sbjct: 2 TLLRWVNSLLAEYDKPPVTNFSSDLKDGVALCALLNSLSPGLVDKKKVAASLSRFKKIEN 61
Query: 90 VNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILR 130
+N AL F G K+V E++V+G K+ LG+IWT+I
Sbjct: 62 INLALSFAEKLGGKVVLFEPEDLVEGP-KLILGVIWTLISL 101
Score = 91.6 bits (228), Expect = 3e-23
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 145 EGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKD----NPLQ 200
+ LL W A Y V NF KDG+A CAL++ P L+D K++ ++
Sbjct: 1 KTLLRWVNSLLAEYDKPPVTNFSSDLKDGVALCALLNSLSPGLVDKKKVAASLSRFKKIE 60
Query: 201 NLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVS 240
N+N A AEK + +PED + ++ +
Sbjct: 61 NINLALSFAEKLGGKVVLFEPED-LVEGPKLILGVIWTLI 99
>gnl|CDD|221350 pfam11971, CAMSAP_CH, CAMSAP CH domain. This domain is the
N-terminal CH domain from the CAMSAP proteins.
Length = 85
Score = 68.1 bits (167), Expect = 1e-14
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 151 CQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHK------LSKDNPLQNLNT 204
+ V+N F DG A ALIH + P+L+ H +S + L N+
Sbjct: 1 YVSARCTPLSPPVENLTRDFSDGCALAALIHFYCPQLVPLHDICLKETMSVADSLYNIQL 60
Query: 205 AFDVAEKYL-DIPRMLDPEDLINTP 228
+ E++L + L EDL+ P
Sbjct: 61 LQEFCEEHLGNRCFHLTLEDLLYVP 85
>gnl|CDD|227586 COG5261, IQG1, Protein involved in regulation of cellular
morphogenesis/cytokinesis [Cell division and chromosome
partitioning / Signal transduction mechanisms].
Length = 1054
Score = 30.2 bits (68), Expect = 1.6
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 50 ENIEEDFRNGLKLMLLLEVISGETLPK--PDRGKMRFHKIANVNKALDFIASKGV 102
E+ RNG+ L L + + + P K++F N+N LD I G+
Sbjct: 64 LCFEDSLRNGVFLAKLTQRFNPDLTTVIFPA-DKLQFRHTDNINAFLDLIEHVGL 117
>gnl|CDD|184425 PRK13965, PRK13965, ribonucleotide-diphosphate reductase subunit
beta; Provisional.
Length = 335
Score = 29.0 bits (65), Expect = 3.9
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 9/39 (23%)
Query: 19 ITFLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFR 57
F+ A+HA+S+ F+ C+S E IEE
Sbjct: 110 FAFMVAIHARSYGTIFSTLCSS---------EQIEEAHE 139
>gnl|CDD|218978 pfam06294, DUF1042, Domain of Unknown Function (DUF1042). Spef is
a region of sperm flagellar proteins. It probably exerts
a role in spermatogenesis in that the protein is
expressed predominantly in adult tissue. It is present
in the tails of developing and epididymal sperm internal
to the fibrous sheath and around the dense outer fibres
of the sperm flagellum. The amino-terminal domain
(residues 1-110) shows a possible calponin homology (CH)
domain; however Spef does not bind actin directly under
in vitro conditions, so the function of the
amino-terminal calponin-like domain is unclear.
Transcription aberrations leading to a truncated protein
result in immotile sperm.
Length = 154
Score = 28.2 bits (63), Expect = 4.0
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 147 LLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQ-NLNTA 205
L W Q+++ ++++ +N F DG + R+ P L+D H + LQ LN
Sbjct: 1 LNQWLQQES---RSISPRNLRRDFSDGYLVAEIFKRYYPRLVDLHNYEPKSSLQLKLNNW 57
Query: 206 FDVAEKYLDIPRMLDPEDLI 225
+ EK L+ P+D++
Sbjct: 58 STLNEKVLNKLGFQLPKDVM 77
>gnl|CDD|223042 PHA03322, PHA03322, tegument protein VP11/12; Provisional.
Length = 674
Score = 28.4 bits (63), Expect = 5.7
Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 199 LQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDER----AIMTYVSCYYHAFQGAQQVFH 254
LQ L F +KY+ R DP D R I Y S Y +F
Sbjct: 187 LQELKENFGAVQKYMYFMRPDDP----MQASIDTRIRLQEIAAYNSTGYGWMLWFLDLFD 242
Query: 255 SRV 257
SRV
Sbjct: 243 SRV 245
>gnl|CDD|99875 cd06064, H2MP_F420-Reduc, Endopeptidases belonging to F420-reducing
hydrogenases group. These hydrogenases from methanogens
are encoded by the fru, frc, or frh genes. Sequence
comparison indicates that fruD and frcD gene products
from Methanococcus voltae are similar to HycI protease
of Escherichia coli and are putatively involved in the
C-terminal processing of large subunits (FruA and FrcA
respectively). FrhD (F420 reducing hydrogenase delta
subunit) enzyme belongs to the gene cluster of
8-hydroxy-5-deazaflavin (F420) reducing hydrogenase
(FRH) from the thermophilic methanogen Methanobacterium
thermoautotrophicum delta H. FrhD subunit is putatively
involved in the processing of the coenzyme F420
hydrogenase-processing. It is similar to those frhD
genes found in Methanomicrobia and Methanobacteria. It
is different from the FrhD conserved domain found in
methyl viologen-reducing hydrogenase and
F420-non-reducing hydrogenase iron-sulfur subunit D.
Length = 150
Score = 27.6 bits (62), Expect = 6.2
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 66 LEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVKLVSIGA 109
L+ IS + LP H + + G+++V IG
Sbjct: 74 LKKISVDELPPGKYYDFDAHSWPLADPLHELKDKYGIEIVVIGC 117
>gnl|CDD|185626 PTZ00447, PTZ00447, apical membrane antigen 1-like protein;
Provisional.
Length = 508
Score = 28.4 bits (63), Expect = 6.4
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 139 EEMTAKEGLLLWCQRKTAP-YKNVNVQNFHLSFKDGLAFCALI 180
E M ++GL +W + + KN+++QN H +F D +LI
Sbjct: 181 ECMFIQDGLEIWKNKSKSGSKKNIDLQNIHKNFDDDDKNLSLI 223
>gnl|CDD|222771 PHA00012, I, assembly protein.
Length = 361
Score = 27.9 bits (62), Expect = 7.8
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 5/32 (15%)
Query: 125 WTIILRFAIQDISVEEMTAKEGL---LLWCQR 153
W II F IQDIS+ + A+E L +++C+R
Sbjct: 119 WDII--FIIQDISIMDKQAREALAEHVVYCRR 148
>gnl|CDD|237076 PRK12362, PRK12362, germination protease; Provisional.
Length = 318
Score = 27.5 bits (62), Expect = 9.1
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 194 SKDNPLQNLNTAFDVAEKYLDIPRMLDP--EDLINTPK 229
+ + N+ + + EK I +L P +LI TPK
Sbjct: 254 EEGSEFYNMLKSLNQEEKQQLIKEVLSPYVGNLIVTPK 291
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.399
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,241,505
Number of extensions: 1557691
Number of successful extensions: 1366
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1347
Number of HSP's successfully gapped: 25
Length of query: 319
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 222
Effective length of database: 6,635,264
Effective search space: 1473028608
Effective search space used: 1473028608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)