RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4004
(319 letters)
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain,
contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A
2r0o_A 2eyi_A 2eyn_A 3lue_K
Length = 254
Score = 329 bits (844), Expect = e-114
Identities = 194/220 (88%), Positives = 209/220 (95%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNK 92
TFTAWCNSHLRKAGT IENIEEDFRNGLKLMLLLEVISGE LP+PD+GKMRFHKIANVNK
Sbjct: 31 TFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVNK 90
Query: 93 ALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQ 152
ALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEE +AKEGLLLWCQ
Sbjct: 91 ALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQ 150
Query: 153 RKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKY 212
RKTAPY+NVNVQNFH S+KDGLA CALIHRHRP+LIDY KL KD+P+ NLNTAF+VAEKY
Sbjct: 151 RKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDDPIGNLNTAFEVAEKY 210
Query: 213 LDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQV 252
LDIP+MLD ED++NTPKPDE+AIMTYVSC+YHAF GA+Q
Sbjct: 211 LDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAGAEQA 250
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis
bullosa, actin-binding, alternative splicing, coiled
coil, cytoplasm; 2.75A {Homo sapiens}
Length = 296
Score = 299 bits (767), Expect = e-102
Identities = 113/220 (51%), Positives = 154/220 (70%), Gaps = 6/220 (2%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNK 92
TFT W N HL KA I ++ ED R+G L+ LLEV+SG++LP+ ++G+MRFHK+ NV
Sbjct: 77 TFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQNVQI 135
Query: 93 ALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV----EEMTAKEGLL 148
ALD++ + VKLV+I ++I DGN K+TLG+IWTIIL F I DI V E+MTAKE LL
Sbjct: 136 ALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLL 195
Query: 149 LWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDV 208
LW QR Y+ + NF S++DG F A+IHRH+P LID +K+ + L+NL+ AF V
Sbjct: 196 LWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYRQTNLENLDQAFSV 255
Query: 209 AEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQG 248
AE+ L + R+LDPED ++ P+PDE++I+TYVS Y A
Sbjct: 256 AERDLGVTRLLDPED-VDVPQPDEKSIITYVSSLYDAMPR 294
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology
domain, structural protein; 2.00A {Mus musculus} SCOP:
a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Length = 245
Score = 294 bits (755), Expect = e-100
Identities = 110/229 (48%), Positives = 151/229 (65%), Gaps = 11/229 (4%)
Query: 33 TFTAWCNSHLRK-----AGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKI 87
TFT W N HL K A I ++ ED R+G L+ LLEV+SG++LP+ ++G+MRFHK+
Sbjct: 16 TFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKL 74
Query: 88 ANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMT----A 143
NV ALD++ + VKLV+I ++I DGN K+TLG+IWTIIL F I DI V + A
Sbjct: 75 QNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTA 134
Query: 144 KEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLN 203
KE LLLW QR Y+ + NF S++DG F A+IHRH+P LID +K+ + L+NL+
Sbjct: 135 KEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNLENLD 194
Query: 204 TAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQV 252
AF VAE+ L + R+LDPED ++ P+PDE++I+TYVS Y A
Sbjct: 195 QAFSVAERDLGVTRLLDPED-VDVPQPDEKSIITYVSSLYDAMPRVPGA 242
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin
homology domain, actin-binding, utrophin; 2.6A {Homo
sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Length = 246
Score = 283 bits (724), Expect = 6e-96
Identities = 90/228 (39%), Positives = 141/228 (61%), Gaps = 10/228 (4%)
Query: 33 TFTAWCNSHLRKAG-TAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVN 91
TFT W N+ K G IEN+ D ++G +L+ LLE ++G+ LPK ++G R H + NVN
Sbjct: 20 TFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPK-EKGSTRVHALNNVN 78
Query: 92 KALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE------EMTAKE 145
KAL + + V LV+IG+ +IVDGN K+TLG+IW IIL + ++++ + +++
Sbjct: 79 KALRVLQNNNVDLVNIGSTDIVDGNHKLTLGLIWNIILHWQVKNVMKNIMAGLQQTNSEK 138
Query: 146 GLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHK-LSKDNPLQNLNT 204
LL W ++ T Y VNV NF S+ DGLA ALIH HRP+L D++ +S+ + Q L
Sbjct: 139 ILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQSATQRLEH 198
Query: 205 AFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQV 252
AF++A L I ++LDPED ++T PD+++I+ Y++ + +
Sbjct: 199 AFNIARYQLGIEKLLDPED-VDTTYPDKKSILMYITSLFQVLPQQVSI 245
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 286 bits (732), Expect = 3e-90
Identities = 190/240 (79%), Positives = 210/240 (87%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNK 92
TFTAWCNSHLRKAGT IENIEEDFR+GLKLMLLLEVISGE L KP+RGKMR HKI+NVNK
Sbjct: 12 TFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNK 71
Query: 93 ALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQ 152
ALDFIASKGVKLVSIGAEEIVDGN+KMTLGMIWTIILRFAIQDISVEE +AKEGLLLW Q
Sbjct: 72 ALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWYQ 131
Query: 153 RKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKY 212
RKTAPYKNVN+QNFH+S+KDGL FCALIHRHRPELIDY KL KD+PL NLNTAFDVAEKY
Sbjct: 132 RKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKY 191
Query: 213 LDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVFHSRVQHMTNTAMPDERAIM 272
LDIP+MLD ED++ T +PDE+AIMTYVS +YHAF GAQ+ + + A+ E +
Sbjct: 192 LDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEQL 251
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 267 bits (684), Expect = 7e-90
Identities = 79/224 (35%), Positives = 129/224 (57%), Gaps = 15/224 (6%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP--DRGKMRFHKIANV 90
TFT WCN HL+ I N++ D +GL+L+ LLEV+S + + + R R ++ NV
Sbjct: 24 TFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENV 83
Query: 91 NKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDI--------SVEEMT 142
+ AL+F+ + +KLVSI ++ IVDGNLK+ LG++WT+IL ++I ++ T
Sbjct: 84 SVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQT 143
Query: 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELI-DYHKLSKDNPLQN 201
K+ LL W Q K + + NF+ +++DG A AL+ P L D+ P+ N
Sbjct: 144 PKQRLLGWIQNK---IPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDN 200
Query: 202 LNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHA 245
A A+ +L +P+++ PE++I+ P DE ++MTY+S + A
Sbjct: 201 AREAVQQADDWLGVPQVITPEEIIH-PDVDEHSVMTYLSQFPKA 243
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 266 bits (682), Expect = 3e-89
Identities = 79/224 (35%), Positives = 126/224 (56%), Gaps = 15/224 (6%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP--DRGKMRFHKIANV 90
TFT WCN HL+ I N++ D +GL+L+ LLEV+S + + + R R ++ NV
Sbjct: 51 TFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENV 110
Query: 91 NKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEM--------T 142
+ AL+F+ + +KLVSI ++ IVDGNLK+ LG+IWT+IL ++I +E T
Sbjct: 111 SVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWDEEEDEEAKKQT 170
Query: 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELI-DYHKLSKDNPLQN 201
K+ LL W Q K + + NF ++ G A AL+ P L D+ P+ N
Sbjct: 171 PKQRLLGWIQNK---LPQLPITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTN 227
Query: 202 LNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHA 245
A A+ +L IP+++ PE++++ P D+ ++MTY+S + A
Sbjct: 228 AREAMQQADDWLGIPQVITPEEIVD-PNVDKHSVMTYLSQFPKA 270
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 251 bits (642), Expect = 4e-83
Identities = 46/252 (18%), Positives = 99/252 (39%), Gaps = 44/252 (17%)
Query: 33 TFTAWCNSHLRK---------AGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKM- 82
F W N L +++ + +G+ L ++ + +T+ + K
Sbjct: 28 AFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKK 87
Query: 83 --RFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE- 139
F N+N AL+ ++ G +V+IGAE++ G + LG++W II DI +
Sbjct: 88 LTPFIIQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSR 147
Query: 140 ------------------EMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIH 181
+++ +E LL W + NF KD A+ L++
Sbjct: 148 NEALAALLRDGETLEELMKLSPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLN 207
Query: 182 RHRPEL---------IDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDE 232
+ P+ I+ ++ + L+ + A+K L + + P D+++ +
Sbjct: 208 QIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADK-LGCRQFVTPADVVS---GNP 263
Query: 233 RAIMTYVSCYYH 244
+ + +V+ ++
Sbjct: 264 KLNLAFVANLFN 275
Score = 40.7 bits (95), Expect = 3e-04
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 9/110 (8%)
Query: 26 HAKSHLLTFTAWCNSHLRKAGT-AIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKM-- 82
S W N HL +G I N D ++ LL I+ + + +
Sbjct: 165 MKLSPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDIN 224
Query: 83 -----RFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTI 127
+ L G + + ++V GN K+ L + +
Sbjct: 225 MSGFNETDDLKRAESMLQQADKLGCRQF-VTPADVVSGNPKLNLAFVANL 273
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 240 bits (614), Expect = 4e-76
Identities = 49/275 (17%), Positives = 94/275 (34%), Gaps = 37/275 (13%)
Query: 33 TFTAWCNSHLRKAG---------TAIENIEEDFRNGLKLMLLLEVISGETLPK----PDR 79
F N +L + E ++G+ L L+ V T+ + R
Sbjct: 11 PFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKR 70
Query: 80 GKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV- 138
+ + N L+ + G +V+IG +++ +G + LG+I +I + D+++
Sbjct: 71 VLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLADLNLK 130
Query: 139 ------------------EEMTAKEGLLLWCQRKTAP-YKNVNVQNFHLSFKDGLAFCAL 179
+ ++ LL W V NF KD A+ L
Sbjct: 131 KTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFL 190
Query: 180 IHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYV 239
++ PE D L +PL+ AE+ ++ R L E+++ + +V
Sbjct: 191 LNVLAPEHCDPATLDAKDPLERAELVLSHAER-MNCKRYLTAEEIVE---GSSTLNLAFV 246
Query: 240 SCYYHAFQGAQQVFHSRVQHMTNTAMPDERAIMTY 274
+ +H G + M + R Y
Sbjct: 247 AQIFHERNGLNKDGKYAFAEMMTEDVETCRDERCY 281
Score = 224 bits (571), Expect = 1e-69
Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 22/228 (9%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP----DRGKMRFHKIA 88
+ W NS + + N+ ED RNG L+ +L+ +S ++ KM F K+
Sbjct: 280 CYRLWINSLG--IDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVE 337
Query: 89 NVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDIS------VEEMT 142
N N+ + LV++ +IV GN K+ LG++W ++ +Q + + +
Sbjct: 338 NCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEM 397
Query: 143 AKEGLLLWCQRKTAPY-KNVNVQNFHL-SFKDGLAFCALIHRHRPELIDYHKLSK----D 196
+L W RK + + +++F S GL F L+ P +++++ ++K D
Sbjct: 398 TDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGETDD 457
Query: 197 NPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYH 244
N VA K L L PED++ +++ I+ + +
Sbjct: 458 EKRLNATYIVSVARK-LGCSVFLLPEDIVE---VNQKMILILTASIMY 501
Score = 55.5 bits (133), Expect = 8e-09
Identities = 36/250 (14%), Positives = 77/250 (30%), Gaps = 26/250 (10%)
Query: 36 AWCNSHLRKAGTA--IENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKA 93
W N HL+K G + N D ++ LL V++ E +
Sbjct: 159 KWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAK--DPLERAELV 216
Query: 94 LDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEM------------ 141
L K + AEEIV+G+ + L + I + +
Sbjct: 217 LSHAERMNCKRY-LTAEEIVEGSSTLNLAFVAQIFHERNGLNKDGKYAFAEMMTEDVETC 275
Query: 142 TAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNP--- 198
+ LW + V N ++G ++ + P +++ SK
Sbjct: 276 RDERCYRLWINSLGI---DSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMP 332
Query: 199 ---LQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVFHS 255
++N N + ++ + D++ K ++ + ++ +
Sbjct: 333 FRKVENCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRT 392
Query: 256 RVQHMTNTAM 265
+ MT+ +
Sbjct: 393 LGKEMTDADI 402
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology,
actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 223 bits (570), Expect = 2e-69
Identities = 49/230 (21%), Positives = 95/230 (41%), Gaps = 24/230 (10%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLP--------KPDRGKMRF 84
FT W NS +I + + R+GL L+ + I+ T+ MRF
Sbjct: 289 VFTLWLNSLDVT--PSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRF 346
Query: 85 HKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV----EE 140
+ N N A+D ++G LV I +I DG+ +TL ++W ++ + + +
Sbjct: 347 KAVENCNYAVDLGKNQGFSLVGIQGADITDGSRTLTLALVWQMMRMNITKTLHSLSRGGK 406
Query: 141 MTAKEGLLLWCQRKTAP-YKNVNVQNFH-LSFKDGLAFCALIHRHRPELIDYHKLSK--- 195
+ ++ W A K +++F S G+ ++H + E +DY+ ++
Sbjct: 407 TLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGST 466
Query: 196 -DNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYH 244
+ +QN A +A K L + PED++ R ++ ++
Sbjct: 467 EELAIQNARLAISIARK-LGAVIFILPEDIVA---VRPRLVLHFIGSLMA 512
Score = 220 bits (562), Expect = 3e-68
Identities = 53/280 (18%), Positives = 98/280 (35%), Gaps = 41/280 (14%)
Query: 33 TFTAWCNSHLRK---------AGTAIENIEEDFRNGLKLMLLLEVISGETLPKP------ 77
F NS L T + ++GL L L+ +T+ +
Sbjct: 16 EFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQR 75
Query: 78 -DRGKMRFHKIANVNKALDFIASKG-VKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQD 135
++ F I N N ++ + G + + +IGA +I++G + LG++W II R +
Sbjct: 76 NNKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLVWQIIRRGLLGK 135
Query: 136 ISV-------------------EEMTAKEGLLLWCQRKTAPYK-NVNVQNFHLSFKDGLA 175
I + + ++ LL W V NF DG
Sbjct: 136 IDITLHPELYRLLEEDETLDQFLRLPPEKILLRWFNYHLKAANWPRTVSNFSKDVSDGEN 195
Query: 176 FCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAI 235
+ L+++ PEL L + LQ AEK LD + L P ++ + +
Sbjct: 196 YTVLLNQLAPELCSRAPLQTTDVLQRAEQVLQNAEK-LDCRKYLTPTAMV---AGNPKLN 251
Query: 236 MTYVSCYYHAFQGAQQVFHSRVQHMTNTAMPDERAIMTYV 275
+ +V+ ++ G + + + ER +
Sbjct: 252 LAFVAHLFNTHPGLEPLNEEEKPEIEPFDAEGEREARVFT 291
Score = 59.7 bits (144), Expect = 3e-10
Identities = 34/240 (14%), Positives = 73/240 (30%), Gaps = 30/240 (12%)
Query: 29 SHLLTFTAWCNSHLRKAGTA--IENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHK 86
W N HL+ A + N +D +G +LL ++ E +
Sbjct: 161 PPEKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSR--APLQTTDV 218
Query: 87 IANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFA------------IQ 134
+ + L + + +V GN K+ L + + I+
Sbjct: 219 LQRAEQVLQNAEKLDCRKY-LTPTAMVAGNPKLNLAFVAHLFNTHPGLEPLNEEEKPEIE 277
Query: 135 DISVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLS 194
E LW ++ +F + +DGL + P +++ K++
Sbjct: 278 PFDAEGEREARVFTLWLNS---LDVTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVN 334
Query: 195 KDNP----------LQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYH 244
K ++N N A D+ + + D+ + + A++ +
Sbjct: 335 KAPASGDEMMRFKAVENCNYAVDLGKNQGFSLVGIQGADITDGSRTLTLALVWQMMRMNI 394
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Length = 121
Score = 211 bits (538), Expect = 2e-69
Identities = 42/113 (37%), Positives = 70/113 (61%)
Query: 139 EEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNP 198
+ LL WCQR+T Y VNV + +S+K GLA CA+IHR+RP+LID+ L + N
Sbjct: 6 SGVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDEQNV 65
Query: 199 LQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQ 251
+N AFD+AEK L I ++ +++ + +PD+ +++ Y++ +Y F+ +
Sbjct: 66 EKNNQLAFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFKDSGP 118
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain,
actin binding, structural genomics, NPPSFA; NMR {Homo
sapiens} PDB: 2jv9_A 2k3s_A
Length = 128
Score = 210 bits (537), Expect = 4e-69
Identities = 47/116 (40%), Positives = 67/116 (57%)
Query: 137 SVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKD 196
S K+ LL WC+ KT Y++V++QNF S+ DG+AFCAL+H PE DY +LS
Sbjct: 2 SSGSSGIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQ 61
Query: 197 NPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQV 252
N QN AF AE + D P++LD ED++ +PD + + TY+ +Y V
Sbjct: 62 NRRQNFEVAFSSAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCLVQKGLV 117
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Homo sapiens}
Length = 127
Score = 206 bits (525), Expect = 2e-67
Identities = 60/116 (51%), Positives = 82/116 (70%), Gaps = 1/116 (0%)
Query: 137 SVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKD 196
S AK+ LLLWCQ KTA Y NVNV NF S++DGLAF A++H+HRP+L+D+ L K
Sbjct: 2 SSGSSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKKC 61
Query: 197 NPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQV 252
N NL AF++AEK L + ++LDPED +N +PDE++I+TYV+ YYH F + +
Sbjct: 62 NAHYNLQNAFNLAEKELGLTKLLDPED-VNVDQPDEKSIITYVATYYHYFSKMKAL 116
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains;
CH domain, mical, structural genomics; NMR {Homo
sapiens} PDB: 2dk9_A
Length = 116
Score = 204 bits (521), Expect = 6e-67
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 137 SVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKD 196
S +E LL WCQ +TA Y V+V + S+ DGLA CAL++R +P L++ +L
Sbjct: 2 SSGSSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGL 61
Query: 197 NPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQ 251
L+ A VAE L I ++ + ++ D ++ Y+S ++ AF+
Sbjct: 62 GALEATAWALKVAENELGITPVVSAQAVV--AGSDPLGLIAYLSHFHSAFKSGPS 114
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 202 bits (517), Expect = 2e-66
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 137 SVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKD 196
A + LL+WC+ T Y+ V + NF S+++GL+FCA++H RP+LIDY L+
Sbjct: 4 GSSGPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQ 63
Query: 197 NPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQ 251
+ +N A+D + I R+L+P D++ PD+ +MTY+ F
Sbjct: 64 DIKENNKKAYD-GFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSSGPS 117
>1bhd_A Utrophin; calponin homology, actin binding, structural protein;
2.00A {Homo sapiens} SCOP: a.40.1.1
Length = 118
Score = 202 bits (516), Expect = 3e-66
Identities = 42/115 (36%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
Query: 138 VEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDN 197
+++ +++ LL W ++ T PY VNV NF S+ DGLAF A++HRH+P+L + K+ K +
Sbjct: 4 LQQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMS 63
Query: 198 PLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQV 252
P++ L AF A+ YL I ++LDPED + PD+++I+ Y++ + +
Sbjct: 64 PIERLEHAFSKAQTYLGIEKLLDPED-VAVRLPDKKSIIMYLTSLFEVLPQQVTI 117
>1bkr_A Spectrin beta chain; filamentous actin-binding domain,
cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB:
1aa2_A
Length = 109
Score = 197 bits (504), Expect = 2e-64
Identities = 60/107 (56%), Positives = 81/107 (75%), Gaps = 1/107 (0%)
Query: 140 EMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPL 199
+ +AK+ LLLWCQ KTA Y NVN+ NF S++DG+AF ALIH+HRP+LID+ KL K N
Sbjct: 1 KKSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAH 60
Query: 200 QNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAF 246
NL AF++AE++L + ++LDPED I+ PDE++I+TYV YYH F
Sbjct: 61 YNLQNAFNLAEQHLGLTKLLDPED-ISVDHPDEKSIITYVVTYYHYF 106
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase,
all alpha, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 129
Score = 151 bits (382), Expect = 7e-46
Identities = 32/105 (30%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Query: 33 TFTAWCNSHLRKAG--TAIENIEEDFRNGLKLMLLLEVISGETLPKPD-RGKMRFHKIAN 89
+T W N +L K+G I ++++D +G+ L +++V++ E + + K R I N
Sbjct: 22 IYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIEN 81
Query: 90 VNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQ 134
++ L+F+A+KG+ + + AEEI +GNLK LG+ +++ Q
Sbjct: 82 IDACLNFLAAKGINIQGLSAEEIRNGNLKAILGLFFSLSRYKQQQ 126
Score = 26.3 bits (58), Expect = 8.7
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 163 VQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQ---NLNTAFDVAEK 211
+++ DG+ +I E I+ N Q N++ +
Sbjct: 40 IRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDACLNFLAA 91
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction,
alternative splicing, calponin homology domain,
actin-binding, cell membrane; 1.05A {Homo sapiens} PDB:
2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Length = 131
Score = 146 bits (369), Expect = 6e-44
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPD---RGKMRFHKIAN 89
T + N HL K + +E F +G+ L+LL+ ++ G +P K+ N
Sbjct: 26 TLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLN 85
Query: 90 VNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRF 131
V+ A + + G++ E+IV+ +LK TL +++ + ++
Sbjct: 86 VSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKY 127
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Length = 124
Score = 45.0 bits (106), Expect = 3e-06
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 12/110 (10%)
Query: 139 EEMTAKEGLLLWCQRK-TAPYKNVNVQNFH-LSFKDGLAFCALIHRHRPELIDYH----- 191
++ W R + K+ ++Q+F + LA LI +P I+Y
Sbjct: 5 SSGNDDI-IVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSG 63
Query: 192 KLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSC 241
L++D+ N A +A + + PEDL+ + +MT +C
Sbjct: 64 NLTEDDKHNNAKYAVSMARR-IGARVYALPEDLVEV---KPKMVMTVFAC 109
Score = 34.2 bits (78), Expect = 0.014
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 36 AWCNSHLRKAG--TAIENIEED-FRNGLKLMLLLEVISGET----LPKPDRGKMRFHKIA 88
W N L +AG T+I++ ++ + L ++ L++ I L K K
Sbjct: 14 NWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTED-DKHN 72
Query: 89 NVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILR 130
N A+ +A + V E++V+ KM + + ++ R
Sbjct: 73 NAKYAVS-MARRIGARVYALPEDLVEVKPKMVMTVFACLMGR 113
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 4e-06
Identities = 52/322 (16%), Positives = 103/322 (31%), Gaps = 105/322 (32%)
Query: 21 FLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGL------------KLMLLLEV 68
L+ + + L ++ R + I E R+GL KL ++E
Sbjct: 307 LLKYLDCRPQDLPREV-LTTNPR----RLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 69 ISGETLPKPDRGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTII 128
S L +P + F +++ + + + + L +IW +
Sbjct: 362 -SLNVL-EPAEYRKMFDRLS--------VFPPSAHIPT------------ILLSLIWFDV 399
Query: 129 LRFAIQDISVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELI 188
++ + + V ++ L+ Q K + + + +L K
Sbjct: 400 IKSDVMVV-VNKLHKY--SLVEKQPKESTIS---IPSIYLELK----------VKLENEY 443
Query: 189 DYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQG 248
H+ + + Y +IP+ D +DLI P D+ Y+++ G
Sbjct: 444 ALHRS--------------IVDHY-NIPKTFDSDDLI-PPYLDQ---------YFYSHIG 478
Query: 249 AQQVFHSRVQHMTNTAMPDERAIMTYVSSYYHCFSGAQ--KAETAANRICKVLKVNQ--- 303
H H+ N P+ + V + F + TA N +L Q
Sbjct: 479 -----H----HLKNIEHPERMTLFRMVFLDFR-FLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 304 -------ENERLMEEYERLASD 318
+N+ +YERL +
Sbjct: 529 FYKPYICDND---PKYERLVNA 547
Score = 27.9 bits (61), Expect = 5.2
Identities = 17/145 (11%), Positives = 41/145 (28%), Gaps = 27/145 (18%)
Query: 181 HRHRPEL----IDYH--KLSKDNPLQNLNTAFDVAEKYLDIPRML----DPEDLINTPKP 230
H H + Y + FD + D+P+ + + + +I +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVF-EDAFVDNFDCKD-VQDMPKSILSKEEIDHIIMSKDA 60
Query: 231 DERAIMTYV-------SCYYHAFQGAQQV----FHSRVQHMTNTAMPDERAIMTYVSSYY 279
+ + + ++ S ++ R Y+
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR---MYIEQRD 117
Query: 280 HCFSGAQK-AETAANRICKVLKVNQ 303
++ Q A+ +R+ LK+ Q
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQ 142
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle,
protein binding; 2.21A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 159
Score = 34.1 bits (78), Expect = 0.025
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 37 WCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPK-PDRGKMRFHKIANVNKALD 95
W L E+ RNG+ L LL++ + L K +++F N+NK LD
Sbjct: 19 WIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLD 78
Query: 96 FIASKGVKLVSI 107
FI G+ +
Sbjct: 79 FIHGIGLPEIFH 90
Score = 26.4 bits (58), Expect = 9.1
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 162 NVQNFHLSFKDGLAFCALIHRHRPELI-DYHKLSKDNPLQ--NLNTAFDVAEKY-LDIPR 217
F S ++G+ L+ + +P+ + ++ N+N D L
Sbjct: 30 PTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIF 89
Query: 218 MLDPEDL 224
+ D+
Sbjct: 90 HFELTDI 96
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle,
cytokine; 2.22A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 203
Score = 34.2 bits (78), Expect = 0.034
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 37 WCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPK-PDRGKMRFHKIANVNKALD 95
W L E+ RNG+ L LL++ + L K +++F N+NK LD
Sbjct: 63 WIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLD 122
Query: 96 FIASKGVKLVSI 107
FI G+ +
Sbjct: 123 FIHGIGLPEIFH 134
Score = 28.0 bits (62), Expect = 3.1
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 165 NFHLSFKDGLAFCALIHRHRPELI-DYHKLSKDNPLQ--NLNTAFDVAEKY-LDIPRMLD 220
F S ++G+ L+ + +P+ + ++ N+N D L +
Sbjct: 77 TFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFE 136
Query: 221 PEDL 224
D+
Sbjct: 137 LTDI 140
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin
binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Length = 108
Score = 32.7 bits (75), Expect = 0.035
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 50 ENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVK 103
+N + ++G+ L L+ + ++ K + +HK+ N+ L I GVK
Sbjct: 22 DNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHYGVK 75
Score = 30.4 bits (69), Expect = 0.23
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 164 QNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDN--PLQNLNTAFDVAEKY 212
NF KDG+ C LI++ +P + N L+N+ + Y
Sbjct: 22 DNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHY 72
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.050
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 30/121 (24%)
Query: 174 LAFCALIHRHRPELIDYHKLSKDNP-LQNLNTAFDVAEKYL---DI----PRMLDPEDLI 225
L + + L++ K+ + + L T F+ YL DI ++L D
Sbjct: 65 LGYVS-------SLVEPSKVGQFDQVLNLCLTEFE--NCYLEGNDIHALAAKLLQEND-- 113
Query: 226 NTPKPDERAIMTYVSCYYHAFQGAQQVFHSRVQHMTNTAMPDERAIMTYVSSYYHCFSGA 285
T + + + Y A A++ F + A+ + A F G
Sbjct: 114 -TTLVKTKEL---IKNYITARIMAKRPFDKKSNSALFRAVGEGNA------QLVAIFGG- 162
Query: 286 Q 286
Q
Sbjct: 163 Q 163
Score = 32.7 bits (74), Expect = 0.17
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 22/57 (38%)
Query: 68 VISGETLPKPDRGKMRFHKIANVNKA---LDFIASKGVKL----VSIGAEEIVDGNL 117
V +G+ + ++ L+FI + + + S+ EE V+G+L
Sbjct: 1854 VAAGD--------------LRALDTVTNVLNFIKLQKIDIIELQKSLSLEE-VEGHL 1895
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural
genomics, NPPSFA, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 146
Score = 32.5 bits (74), Expect = 0.071
Identities = 10/54 (18%), Positives = 28/54 (51%)
Query: 50 ENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVK 103
+ ++ ++G L L+ + ++PK +R +H++ N++ + + S G+
Sbjct: 36 PDFQKGLKDGTILCTLMNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYGMN 89
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 32.5 bits (73), Expect = 0.18
Identities = 17/18 (94%), Positives = 18/18 (100%)
Query: 301 VNQENERLMEEYERLASD 318
VNQENERLMEEYERLAS+
Sbjct: 5 VNQENERLMEEYERLASE 22
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural
genomics, NPPSFA, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 136
Score = 31.0 bits (70), Expect = 0.22
Identities = 10/54 (18%), Positives = 24/54 (44%)
Query: 50 ENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVK 103
N + ++G+ L + + ++ K + +H++ N+ + I GVK
Sbjct: 36 NNFMDGLKDGIILCEFINKLQPGSVKKINESTQNWHQLENIGNFIKAITKYGVK 89
Score = 27.5 bits (61), Expect = 3.7
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 164 QNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNP--LQNLNTAFDVAEKY-LDIPRMLD 220
NF KDG+ C I++ +P + S N L+N+ KY + + +
Sbjct: 36 NNFMDGLKDGIILCEFINKLQPGSVKKINESTQNWHQLENIGNFIKAITKYGVKPHDIFE 95
Query: 221 PEDL 224
DL
Sbjct: 96 ANDL 99
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Length = 144
Score = 30.7 bits (69), Expect = 0.31
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 157 PYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQ------NLNTAFDVAE 210
+ F + K+G+ L++ PE K+ ++ P + AE
Sbjct: 27 GRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAE 86
Query: 211 KY 212
Y
Sbjct: 87 DY 88
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha,
NPPSFA, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Length = 121
Score = 29.1 bits (65), Expect = 0.87
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 164 QNFHLSFKDGLAFCALIHRHRPELID-YHKLSKDNPLQNLNTA-FDVAEKYLDIPRMLDP 221
+ S K+G+ C LI+R P ++ + + N F L + + DP
Sbjct: 33 EFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQVE-IFDP 91
Query: 222 EDL 224
+DL
Sbjct: 92 DDL 94
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Length = 155
Score = 29.2 bits (65), Expect = 1.1
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 50 ENIEEDFRNGLKLMLLLEVI---SGETLPKPDRGKMRFHKIANVNKALDFIASKGVK 103
EN + ++G L L+ + + K M F ++ +++ L G+
Sbjct: 42 ENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGIN 98
Score = 28.8 bits (64), Expect = 1.2
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 143 AKEGLLLW---CQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPL 199
++ L+ W RK +NF KDG C LI+ PE K + + +
Sbjct: 18 LEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTM 77
Query: 200 Q-----NLNTAFDVAEKY 212
++ AE+Y
Sbjct: 78 AFKQMEQISQFLQAAERY 95
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton,
hemidesmosomes epidermolysis bullosa, structural
protein; 2.05A {Homo sapiens} PDB: 2odu_A
Length = 235
Score = 28.5 bits (63), Expect = 2.6
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 303 QENERLMEEYERLASD 318
E + +EY L
Sbjct: 7 NELQLRWQEYRELVLL 22
>3vgx_C Envelope glycoprotein GP160; 6-helix bundle, membrane fusion,
membrane protein; HET: GOL; 1.74A {Human
immunodeficiency virus type 1}
Length = 40
Score = 25.8 bits (56), Expect = 2.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 21 FLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEED 55
L+A+ A+ HLL T W L+ A+E +D
Sbjct: 4 LLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKD 38
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A
{Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A
1euz_A
Length = 419
Score = 28.6 bits (65), Expect = 2.9
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 195 KDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVFH 254
+ +P + + + A +Y++I + + P +R + V+ G+ +VF
Sbjct: 2 EADPYEIVIKQLERAAQYMEISEEA--LEFLKRP---QRIVE--VTIPVEMDDGSVKVFT 54
Query: 255 S-RVQHMTNTAM 265
RVQH N A
Sbjct: 55 GFRVQH--NWAR 64
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase,
digestive tract, hydrolase-hydrolase INH complex; HET:
074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A*
Length = 254
Score = 28.0 bits (63), Expect = 3.3
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 96 FIASKGVKLVSIGAEEIVD 114
I S G + V + A +++
Sbjct: 45 CIQSGGKQNVELSAVDLLS 63
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics,
northeast structural genomics consortiu PSI-biology,
calponin-homology domain; NMR {Homo sapiens}
Length = 126
Score = 27.3 bits (60), Expect = 3.6
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 164 QNFHLSFKDGLAFCALIHRHRPEL---IDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLD 220
S KDG+ C L+ R P + S+ L N+ L + D
Sbjct: 39 GFLQASLKDGVVLCRLLERLLPGTIEKVYPEPRSESECLSNIREFLRGCGASLRLE-TFD 97
Query: 221 PEDL 224
DL
Sbjct: 98 ANDL 101
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 28.2 bits (64), Expect = 3.7
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 10/74 (13%)
Query: 193 LSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQV 252
+ + L+ + + PED R ++ V+ G +V
Sbjct: 1 MERTGFLEYVLNYVKKGVELGGF-----PEDFYKILSRPRRVLI--VNIPVRLDGGGFEV 53
Query: 253 FHS-RVQHMTNTAM 265
F RVQH +
Sbjct: 54 FEGYRVQH--CDVL 65
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 28.1 bits (62), Expect = 4.0
Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 156 APYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLD 214
++ V + +DG+ C L++ P I+ +++ P + +L
Sbjct: 26 VTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNL-RPQMSQFLCLKNIRTFLS 83
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical,
calmodulin-binding, cell membrane, membrane,
phosphoprotein, protein binding; 2.50A {Homo sapiens}
Length = 193
Score = 27.7 bits (61), Expect = 4.6
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 37 WCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLP----------KPDRGKMRFHK 86
W + L + +EE RNG+ L L S + + + + F
Sbjct: 55 WMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRH 114
Query: 87 IANVNKALDFIASKGVKLVSI 107
NV + L+ + G+ +
Sbjct: 115 TDNVIQWLNAMDEIGLPKIFY 135
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo
sapiens}
Length = 190
Score = 27.2 bits (60), Expect = 5.1
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 37 WCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLP----------KPDRGKMRFHK 86
W + L + +EE RNG+ L L S + + + + F
Sbjct: 33 WMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRH 92
Query: 87 IANVNKALDFIASKGVKLVSI 107
NV + L+ + G+ +
Sbjct: 93 TDNVIQWLNAMDEIGLPKIFY 113
>3cgh_A SUSD homolog; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2; 1.70A
{Bacteroides thetaiotaomicron vpi-5482} SCOP: a.118.8.6
Length = 516
Score = 27.5 bits (60), Expect = 6.3
Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 1/104 (0%)
Query: 71 GETLPKPDRGKMRFHKI-ANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIIL 129
GE D ++ ++ +N A+ + + + A+ I G++K + ++ L
Sbjct: 141 GEIATPYDSQEVTYNTFFDELNAAIATLNENSNEQLVPTADYIYKGDVKKWIRFANSLKL 200
Query: 130 RFAIQDISVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDG 173
R AI+ + A++ N N ++ +
Sbjct: 201 RLAIRIAYANPVKAQQMAEEAVNPANGGVIESNADNATWNYFET 244
>1qbz_A Protein (SIV GP41 ectodomain); HIV, membrane fusion, peptide
inhibitor, coiled coil, SIV envelope glycoprotein GP41;
1.47A {Simian immunodeficiency virus} SCOP: h.3.2.1
PDB: 1qce_A 2ezo_A 2ezp_A 2ezq_A 2ezr_A 2ezs_A 2siv_B
2siv_A
Length = 123
Score = 26.5 bits (58), Expect = 7.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 21 FLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEED 55
L V + LL T W +L+ TAIE +D
Sbjct: 17 LLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKD 51
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 27.1 bits (61), Expect = 8.5
Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 10/73 (13%)
Query: 194 SKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVF 253
P + D YL L + K +R ++ V G+ F
Sbjct: 27 KDGGPWEIFTEQVDRVVPYLGR-----LAPLAESLKRPKRVLI--VDVPVRLDDGSVAYF 79
Query: 254 HS-RVQHMTNTAM 265
RV H NTA
Sbjct: 80 EGYRVHH--NTAR 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.399
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,930,749
Number of extensions: 297355
Number of successful extensions: 741
Number of sequences better than 10.0: 1
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 82
Length of query: 319
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 225
Effective length of database: 4,077,219
Effective search space: 917374275
Effective search space used: 917374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.1 bits)