RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4004
(319 letters)
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 500
Score = 244 bits (624), Expect = 5e-78
Identities = 48/275 (17%), Positives = 94/275 (34%), Gaps = 38/275 (13%)
Query: 33 TFTAWCNSHLRKAG---------TAIENIEEDFRNGLKLMLLLEVISGETLPK----PDR 79
F N +L + E ++G+ L L+ V T+ + R
Sbjct: 5 PFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKR 64
Query: 80 GKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDI--- 136
+ + N L+ + G +V+IG +++ +G + LG+I +I + D+
Sbjct: 65 VLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLADLNLK 124
Query: 137 ----------------SVEEMTAKEGLLLWCQRKTA-PYKNVNVQNFHLSFKDGLAFCAL 179
+ + ++ LL W V NF KD A+ L
Sbjct: 125 KTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFL 184
Query: 180 IHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYV 239
++ PE D L +PL+ AE+ ++ R L E+++ + +V
Sbjct: 185 LNVLAPEHCDPATLDAKDPLERAELVLSHAER-MNCKRYLTAEEIVE---GSSTLNLAFV 240
Query: 240 SCYYHAFQGAQQV-FHSRVQHMTNTAMPDERAIMT 273
+ +H G + ++ + MT
Sbjct: 241 AQIFHERNGLNKDGKYAFAEMMTEDVETCRDERCY 275
Score = 229 bits (584), Expect = 4e-72
Identities = 52/234 (22%), Positives = 97/234 (41%), Gaps = 22/234 (9%)
Query: 28 KSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLP----KPDRGKMR 83
+ W NS + + N+ ED RNG L+ +L+ +S ++ KM
Sbjct: 269 CRDERCYRLWINSL--GIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMP 326
Query: 84 FHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEM-- 141
F K+ N N+ + LV++ +IV GN K+ LG++W ++ +Q +
Sbjct: 327 FRKVENCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRT 386
Query: 142 ----TAKEGLLLWCQRKTAPY-KNVNVQNFHL-SFKDGLAFCALIHRHRPELIDYHKLSK 195
+L W RK + + +++F S GL F L+ P +++++ ++K
Sbjct: 387 LGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTK 446
Query: 196 ----DNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHA 245
D N VA K L L PED++ +++ I+ + +
Sbjct: 447 GETDDEKRLNATYIVSVARK-LGCSVFLLPEDIVE---VNQKMILILTASIMYW 496
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 228 bits (583), Expect = 6e-72
Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 24/229 (10%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETL--------PKPDRGKMRF 84
FT W NS +I + + R+GL L+ + I+ T+ P MRF
Sbjct: 281 VFTLWLNSLDVT--PSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRF 338
Query: 85 HKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEM--- 141
+ N N A+D ++G LV I +I DG+ +TL ++W ++ + +
Sbjct: 339 KAVENCNYAVDLGKNQGFSLVGIQGADITDGSRTLTLALVWQMMRMNITKTLHSLSRGGK 398
Query: 142 --TAKEGLLLWCQRKTAPYKNVNVQNFHL-SFKDGLAFCALIHRHRPELIDYHKLSK--- 195
+ + + K +++F S G+ ++H + E +DY+ ++
Sbjct: 399 TLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGST 458
Query: 196 -DNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYY 243
+ +QN A +A K L + PED++ R ++ ++
Sbjct: 459 EELAIQNARLAISIARK-LGAVIFILPEDIVA---VRPRLVLHFIGSLM 503
Score = 216 bits (552), Expect = 2e-67
Identities = 55/305 (18%), Positives = 103/305 (33%), Gaps = 46/305 (15%)
Query: 33 TFTAWCNSHLRK---------AGTAIENIEEDFRNGLKLMLLLEVISGETL-------PK 76
F NS L T + ++GL L L+ +T+ +
Sbjct: 8 EFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQR 67
Query: 77 PDRGKMRFHKIANVNKALDFI-ASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQD 135
++ F I N N ++ A G+ + +IGA +I++G + LG++W II R +
Sbjct: 68 NNKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLVWQIIRRGLLGK 127
Query: 136 I-------------------SVEEMTAKEGLLLWCQRKTAPYK-NVNVQNFHLSFKDGLA 175
I + ++ LL W V NF DG
Sbjct: 128 IDITLHPELYRLLEEDETLDQFLRLPPEKILLRWFNYHLKAANWPRTVSNFSKDVSDGEN 187
Query: 176 FCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAI 235
+ L+++ PEL L + LQ AEK LD + L P ++ + +
Sbjct: 188 YTVLLNQLAPELCSRAPLQTTDVLQRAEQVLQNAEK-LDCRKYLTPTAMVA---GNPKLN 243
Query: 236 MTYVSCYYHAFQGAQQVFHSRVQHMTNTAMPDERAIMTYVSSYYHCFSGAQKAETAANRI 295
+ +V+ ++ G + + + ER + + + + +
Sbjct: 244 LAFVAHLFNTHPGLEPLNEEEKPEIEPFDAEGEREARV-----FTLWLNSLDVTPSIHDF 298
Query: 296 CKVLK 300
L+
Sbjct: 299 FNNLR 303
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 155 bits (394), Expect = 2e-48
Identities = 42/108 (38%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 138 VEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDN 197
+++ +++ LL W ++ T PY VNV NF S+ DGLAF A++HRH+P+L + K+ K +
Sbjct: 1 LQQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMS 60
Query: 198 PLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHA 245
P++ L AF A+ YL I ++LDPED + PD+++I+ Y++ +
Sbjct: 61 PIERLEHAFSKAQTYLGIEKLLDPED-VAVRLPDKKSIIMYLTSLFEV 107
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 154 bits (391), Expect = 5e-48
Identities = 55/108 (50%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 139 EEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNP 198
E+MTAKE LLLW QR Y+ + NF S++DG F A+IHRH+P LID +K+ +
Sbjct: 3 EDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTN 62
Query: 199 LQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAF 246
L+NL+ AF VAE+ L + R+LDPED ++ P+PDE++I+TYVS Y A
Sbjct: 63 LENLDQAFSVAERDLGVTRLLDPED-VDVPQPDEKSIITYVSSLYDAM 109
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 142 bits (359), Expect = 6e-43
Identities = 41/121 (33%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Query: 133 IQDI------SVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPE 186
++++ +++ +++ LL W ++ T Y VNV NF S+ DGLA ALIH HRP+
Sbjct: 1 VKNVMKNIMAGLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPD 60
Query: 187 LIDYHK-LSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHA 245
L D++ +S+ + Q L AF++A L I ++LDPED+ PD+++I+ Y++ +
Sbjct: 61 LFDWNSVVSQQSATQRLEHAFNIARYQLGIEKLLDPEDVDT-TYPDKKSILMYITSLFQV 119
Query: 246 F 246
Sbjct: 120 L 120
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 141 bits (356), Expect = 8e-43
Identities = 60/105 (57%), Positives = 80/105 (76%), Gaps = 1/105 (0%)
Query: 142 TAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQN 201
+AK+ LLLWCQ KTA Y NVN+ NF S++DG+AF ALIH+HRP+LID+ KL K N N
Sbjct: 2 SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYN 61
Query: 202 LNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAF 246
L AF++AE++L + ++LDPED I+ PDE++I+TYV YYH F
Sbjct: 62 LQNAFNLAEQHLGLTKLLDPED-ISVDHPDEKSIITYVVTYYHYF 105
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 125 bits (314), Expect = 2e-36
Identities = 58/112 (51%), Positives = 77/112 (68%), Gaps = 6/112 (5%)
Query: 33 TFTAWCNSHLRKAGTA-----IENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKI 87
TFT W N HL K A I ++ ED R+G L+ LLEV+SG++LP+ +G+MRFHK+
Sbjct: 9 TFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPRE-KGRMRFHKL 67
Query: 88 ANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE 139
NV ALD++ + VKLV+I ++I DGN K+TLG+IWTIIL F I DI V
Sbjct: 68 QNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVS 119
Score = 31.1 bits (70), Expect = 0.060
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 160 NVNVQNFHLSFKDGLAFCALIHRHRPE-LIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRM 218
++ + + +DG +L+ + L + + LQN+ A D
Sbjct: 27 QRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVN 86
Query: 219 LDPEDLIN 226
+ +D+ +
Sbjct: 87 IRNDDIAD 94
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 114 bits (286), Expect = 2e-32
Identities = 47/100 (47%), Positives = 66/100 (66%), Gaps = 2/100 (2%)
Query: 33 TFTAWCNSHLRKAGTAI-ENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVN 91
TFT W N+ K G EN+ D ++G +L+ LLE ++G+ LPK +G R H + NVN
Sbjct: 12 TFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKE-KGSTRVHALNNVN 70
Query: 92 KALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRF 131
KAL + + V LV+IG+ +IVDGN K+TLG+IW IIL +
Sbjct: 71 KALRVLQNNNVDLVNIGSTDIVDGNHKLTLGLIWNIILHW 110
Score = 36.1 bits (83), Expect = 0.001
Identities = 15/109 (13%), Positives = 40/109 (36%), Gaps = 4/109 (3%)
Query: 140 EMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHK-LSKDNP 198
E K+ W + + + +++N +DG L+ + + K ++ +
Sbjct: 6 EDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKEKGSTRVHA 65
Query: 199 LQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247
L N+N A V + + D+++ + + + + +Q
Sbjct: 66 LNNVNKALRVLQNNNVDLVNIGSTDIVDG---NHKLTLGLIWNIILHWQ 111
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 109 bits (274), Expect = 2e-30
Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 15/127 (11%)
Query: 33 TFTAWCNSHLRKA---------GTAIENIEEDFRNGLKLMLLLEVISGETLPKPD---RG 80
F W N L +++ + +G+ L ++ + +T+ + +
Sbjct: 8 AFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKK 67
Query: 81 KMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEE 140
F N+N AL+ ++ G +V+IGAE++ G + LG++W II DI +
Sbjct: 68 LTPFIIQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIEL-- 125
Query: 141 MTAKEGL 147
+ E L
Sbjct: 126 -SRNEAL 131
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 89.7 bits (222), Expect = 5e-23
Identities = 19/115 (16%), Positives = 46/115 (40%), Gaps = 13/115 (11%)
Query: 139 EEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKD-- 196
+++ +E LL W + NF KD A+ L+++ P+ + D
Sbjct: 6 MKLSPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDIN 65
Query: 197 -------NPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYH 244
+ L+ + A+K L + + P D+++ + + + +V+ ++
Sbjct: 66 MSGFNETDDLKRAESMLQQADK-LGCRQFVTPADVVS---GNPKLNLAFVANLFN 116
Score = 83.1 bits (205), Expect = 2e-20
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 9/103 (8%)
Query: 33 TFTAWCNSHLRKAG-TAIENIEEDFRNGLKLMLLLEVISGETLPK-------PDRGKMRF 84
W N HL +G I N D ++ LL I+ + + G
Sbjct: 13 LLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNET 72
Query: 85 HKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTI 127
+ L G + + ++V GN K+ L + +
Sbjct: 73 DDLKRAESMLQQADKLGCRQF-VTPADVVSGNPKLNLAFVANL 114
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 85.4 bits (211), Expect = 3e-21
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
Query: 37 WCNSHLRKAG--TAIENIEE-DFRNGLKLMLLLEVISGETLPKPD---RGKMRFHKIANV 90
W N L +AG T+I++ ++ + L ++ L++ I + K N
Sbjct: 15 WVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNA 74
Query: 91 NKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRF 131
A+ G V E++V+ KM + + ++ R
Sbjct: 75 KYAVSMARRIGA-RVYALPEDLVEVKPKMVMTVFACLMGRG 114
Score = 77.3 bits (190), Expect = 2e-18
Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 137 SVEEMTAKEGLLLWCQRK-TAPYKNVNVQNF-HLSFKDGLAFCALIHRHRPELIDYHKLS 194
S + ++ W R + K+ ++Q+F + LA LI +P I+Y +
Sbjct: 2 SSGSSGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVK 61
Query: 195 K-----DNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247
D+ N A + + + PEDL+ + +MT +C
Sbjct: 62 SGNLTEDDKHNNAKYAVSM-ARRIGARVYALPEDLVE---VKPKMVMTVFACLMGRGM 115
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 159
Score = 78.5 bits (193), Expect = 3e-18
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 10/155 (6%)
Query: 21 FLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP-DR 79
LQA + W L E+ RNG+ L LL++ + L K
Sbjct: 3 TLQAYDYLCRVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYS 62
Query: 80 GKMRFHKIANVNKALDFIASKGV-KLVSIGAEEIVDG-NLKMTLGMIWTIILRFAIQDIS 137
+++F N+NK LDFI G+ ++ +I +G NL + I + ++QD++
Sbjct: 63 NELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDLA 122
Query: 138 ------VEEMTAKEGLLLWCQRKTAPYKNVNVQNF 166
E ++ + + R+ NV + NF
Sbjct: 123 PPLIKSDENLSFTDEDVSIIVRRLRQS-NVILPNF 156
Score = 26.1 bits (57), Expect = 3.7
Identities = 11/92 (11%), Positives = 27/92 (29%), Gaps = 5/92 (5%)
Query: 139 EEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNP 198
+ + + W + F S ++G+ L+ + +P+ + S +
Sbjct: 8 DYLCRVDEAKKWIEECL-GTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQ 66
Query: 199 ---LQNLNTAFDVAEKYLDIPRML-DPEDLIN 226
N+N D + D+
Sbjct: 67 FRHSDNINKFLDFIHGIGLPEIFHFELTDIYE 98
>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 125
Score = 36.7 bits (85), Expect = 6e-04
Identities = 17/18 (94%), Positives = 18/18 (100%)
Query: 301 VNQENERLMEEYERLASD 318
VNQENERLMEEYERLAS+
Sbjct: 4 VNQENERLMEEYERLASE 21
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 108
Score = 31.8 bits (72), Expect = 0.029
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 50 ENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVKLVSI 107
+N + ++G+ L L+ + ++ K + +HK+ N+ L I GVK I
Sbjct: 22 DNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHYGVKPHDI 79
Score = 27.9 bits (62), Expect = 0.55
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 165 NFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLN-TAFDVAEKYLDIPR--MLDP 221
NF KDG+ C LI++ +P + N + N F A K+ + + +
Sbjct: 23 NFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHYGVKPHDIFEA 82
Query: 222 EDL 224
DL
Sbjct: 83 NDL 85
>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 178
Score = 31.4 bits (71), Expect = 0.074
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 197 NPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVFHS- 255
+P + + + A +Y++I E+ + K +R + V+ G+ +VF
Sbjct: 2 DPYEIVIKQLERAAQYMEI-----SEEALEFLKRPQRIVE--VTIPVEMDDGSVKVFTGF 54
Query: 256 RVQHMTNT 263
RVQH
Sbjct: 55 RVQHNWAR 62
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 144
Score = 31.1 bits (70), Expect = 0.077
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 137 SVEEMTAKEGLLLWCQRKTA---PYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKL 193
S EE+ +E L+ W + + F + K+G+ L++ PE K+
Sbjct: 6 SGEEL--EERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKV 63
Query: 194 SKDNP------LQNLNTAFDVAEKYLDIPRML-DPEDL 224
++ P ++ + AE Y I + DL
Sbjct: 64 PENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDL 101
>d2olua1 d.2.1.10 (A:68-292) Penicillin-binding protein 2, PBP2
{Staphylococcus aureus [TaxId: 1280]}
Length = 225
Score = 27.8 bits (61), Expect = 1.3
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 234 AIMTYVSCYYHAFQGAQQVFHSRVQHMTNTAMPDERAIMTYVSSYYHCFSGAQKAETAAN 293
Y S + A + + ++ N A A + V + Y+ + + AE N
Sbjct: 125 LNKIYYSDGVTGIKAAAKYYFNKDLKDLNLAEEAYLAGLPQVPNNYNIYDHPKAAEDRKN 184
Query: 294 RICKVLKVNQENERLM-EEYERLASDP 319
VL + ++R+ +++E
Sbjct: 185 T---VLYLMHYHKRITDKQWEDAKKID 208
>d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 270
Score = 25.9 bits (57), Expect = 6.2
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 39 NSHLRKAGTAIENIEEDFRNGLK 61
+ H+ G +E++E R+ L
Sbjct: 206 SPHIANIGRLVEDMENKIRSTLN 228
>d2q7sa1 c.56.5.9 (A:10-289) N-formylglutamate amidohydrolase
{Ralstonia eutropha [TaxId: 106590]}
Length = 280
Score = 25.6 bits (55), Expect = 8.6
Identities = 17/138 (12%), Positives = 31/138 (22%), Gaps = 11/138 (7%)
Query: 167 HLSFKDGLAFCALIHR-----HRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDP 221
+ G A R +R + L Y I +D
Sbjct: 54 AVPRVGGTLLAATFPRVYIDPNRMLDDIDPAQLEGPWPTPLAPGEKTRLGYGLIWSNVDA 113
Query: 222 EDLINTPKPDERAIMTYVSCYYHAFQGAQQVFHSRVQHMTNTAMPDERAIMTYVSSYYHC 281
I K + ++ YY + A + + + S +
Sbjct: 114 ATPIYDRKLTVAEVQRRINRYYRPYHAALT------EAVEGAYQRFGAVWHLNLHSMPNN 167
Query: 282 FSGAQKAETAANRICKVL 299
K ++ VL
Sbjct: 168 AYERLKIQSPRPLADFVL 185
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.399
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,188,586
Number of extensions: 54868
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 35
Length of query: 319
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,240,546
Effective search space: 290287764
Effective search space used: 290287764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)