BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4005
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P61025|CKS1_MOUSE Cyclin-dependent kinases regulatory subunit 1 OS=Mus musculus
GN=Cks1b PE=2 SV=1
Length = 79
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 52/62 (83%)
Query: 81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
MS I YSDKY+D+ + YRHVMLP D+AK VPKTHLM+E+EWRNLGVQQS GW+HYM+H
Sbjct: 1 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH 60
Query: 141 LP 142
P
Sbjct: 61 EP 62
>sp|P61024|CKS1_HUMAN Cyclin-dependent kinases regulatory subunit 1 OS=Homo sapiens
GN=CKS1B PE=1 SV=1
Length = 79
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 52/62 (83%)
Query: 81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
MS I YSDKY+D+ + YRHVMLP D+AK VPKTHLM+E+EWRNLGVQQS GW+HYM+H
Sbjct: 1 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH 60
Query: 141 LP 142
P
Sbjct: 61 EP 62
>sp|Q0P5A5|CKS1_BOVIN Cyclin-dependent kinases regulatory subunit 1 OS=Bos taurus
GN=CKS1B PE=3 SV=1
Length = 79
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 52/62 (83%)
Query: 81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
MS I YSDKY+D+ + YRHVMLP D+AK VPKTHLM+E+EWRNLGVQQS GW+HYM+H
Sbjct: 1 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH 60
Query: 141 LP 142
P
Sbjct: 61 EP 62
>sp|Q91879|CKS2_XENLA Cyclin-dependent kinases regulatory subunit 2 OS=Xenopus laevis
GN=cks2 PE=3 SV=1
Length = 79
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 52/62 (83%)
Query: 81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
MS +I YSDKY D+++ YRHVMLP +LAKQVPKTHLM+E EWR LGVQQS GW+HYM+H
Sbjct: 1 MSYKNIYYSDKYTDEHFEYRHVMLPKELAKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH 60
Query: 141 LP 142
P
Sbjct: 61 EP 62
>sp|P56390|CKS2_MOUSE Cyclin-dependent kinases regulatory subunit 2 OS=Mus musculus
GN=Cks2 PE=2 SV=1
Length = 79
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 51/62 (82%)
Query: 81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
M+ I YSDKY D++Y YRHVMLP +L+KQVPKTHLM+E EWR LGVQQS GW+HYM+H
Sbjct: 1 MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH 60
Query: 141 LP 142
P
Sbjct: 61 EP 62
>sp|P33552|CKS2_HUMAN Cyclin-dependent kinases regulatory subunit 2 OS=Homo sapiens
GN=CKS2 PE=1 SV=1
Length = 79
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 51/62 (82%)
Query: 81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
M+ I YSDKY D++Y YRHVMLP +L+KQVPKTHLM+E EWR LGVQQS GW+HYM+H
Sbjct: 1 MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH 60
Query: 141 LP 142
P
Sbjct: 61 EP 62
>sp|Q2KJI1|CKS2_BOVIN Cyclin-dependent kinases regulatory subunit 2 OS=Bos taurus GN=CKS2
PE=3 SV=1
Length = 79
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 51/62 (82%)
Query: 81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
M+ I YSDKY D++Y YRHVMLP +L+KQVPKTHLM+E EWR LGVQQS GW+HYM+H
Sbjct: 1 MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH 60
Query: 141 LP 142
P
Sbjct: 61 EP 62
>sp|P41384|CKS1_PATVU Cyclin-dependent kinases regulatory subunit OS=Patella vulgata PE=3
SV=1
Length = 76
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 50/62 (80%)
Query: 81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
MSA I YSDKY D+++ YRHVMLP D+AK VPK HLM+E EWR++GVQQS GWIHYM H
Sbjct: 1 MSARQIYYSDKYFDEDFEYRHVMLPKDIAKMVPKNHLMSEAEWRSIGVQQSHGWIHYMKH 60
Query: 141 LP 142
P
Sbjct: 61 EP 62
>sp|A8XMF2|CKS1_CAEBR Cyclin-dependent kinases regulatory subunit OS=Caenorhabditis
briggsae GN=cks-1 PE=3 SV=1
Length = 94
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 50/63 (79%)
Query: 80 TMSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYML 139
T ++D YS+KYEDD Y YRHV + D+AK +PK LM+ETEWR+LG+QQSPGWIHYM+
Sbjct: 2 TTGSNDFYYSNKYEDDEYEYRHVHVTKDVAKLIPKNRLMSETEWRSLGIQQSPGWIHYMI 61
Query: 140 HLP 142
H P
Sbjct: 62 HGP 64
>sp|Q24152|CKS1_DROME Cyclin-dependent kinases regulatory subunit OS=Drosophila
melanogaster GN=Cks30A PE=3 SV=1
Length = 74
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 49/60 (81%)
Query: 83 ADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLP 142
+ DI YSDKY D+ + YRHV+LP +L K VPKTHLMTE EWR++GVQQS GWIHYM+H P
Sbjct: 2 SKDIYYSDKYYDEQFEYRHVVLPKELVKMVPKTHLMTEAEWRSIGVQQSRGWIHYMIHKP 61
>sp|P55933|CKS1_PHYPO Probable cyclin-dependent kinases regulatory subunit OS=Physarum
polycephalum PE=1 SV=1
Length = 84
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 49/62 (79%)
Query: 81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
M D I+YS+KY DD + YRHV+LPPD+AK++PK L++E EWR LGVQQS GW+HY LH
Sbjct: 1 MPRDTIQYSEKYYDDKFEYRHVILPPDVAKEIPKNRLLSEGEWRGLGVQQSQGWVHYALH 60
Query: 141 LP 142
P
Sbjct: 61 RP 62
>sp|Q17868|CKS1_CAEEL Cyclin-dependent kinases regulatory subunit OS=Caenorhabditis
elegans GN=cks-1 PE=1 SV=1
Length = 94
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 49/63 (77%)
Query: 80 TMSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYML 139
T +D YS+KYEDD + YRHV + D++K +PK LM+ETEWR+LG+QQSPGW+HYM+
Sbjct: 2 TTGNNDFYYSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMI 61
Query: 140 HLP 142
H P
Sbjct: 62 HGP 64
>sp|Q25330|CKS1_LEIME Cyclin-dependent kinases regulatory subunit OS=Leishmania mexicana
PE=3 SV=1
Length = 99
Score = 87.0 bits (214), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 45/57 (78%)
Query: 86 IRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLP 142
I YSDKY DD + YRHV+LP DLA+ VP + LM+E EWR LGVQQS GW+HYM+H P
Sbjct: 31 ILYSDKYYDDMFEYRHVILPKDLARLVPTSRLMSEMEWRQLGVQQSQGWVHYMIHKP 87
>sp|Q9SJJ5|CKS2_ARATH Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis
thaliana GN=CKS2 PE=3 SV=1
Length = 83
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 47/57 (82%)
Query: 86 IRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLP 142
I+YSDKY DD + YRHV+LPP++AK +PK +++E+EWR +GVQQS GW+HY +H P
Sbjct: 4 IQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60
>sp|Q6PS57|CKS1_ORYSJ Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa
subsp. japonica GN=CKS1 PE=2 SV=1
Length = 90
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 46/57 (80%)
Query: 86 IRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLP 142
I+YS+KY DD Y YRHV+LPP++AK +PK L++E EWR +GVQQS GW+HY +H P
Sbjct: 4 IQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
>sp|A2XCH8|CKS1_ORYSI Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa
subsp. indica GN=CKS1 PE=2 SV=1
Length = 90
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 46/57 (80%)
Query: 86 IRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLP 142
I+YS+KY DD Y YRHV+LPP++AK +PK L++E EWR +GVQQS GW+HY +H P
Sbjct: 4 IQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
>sp|O23249|CKS1_ARATH Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis
thaliana GN=CKS1 PE=1 SV=1
Length = 87
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 46/57 (80%)
Query: 86 IRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLP 142
I+YS+KY DD + YRHV+LPP++AK +PK L++E EWR +GVQQS GW+HY +H P
Sbjct: 4 IQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60
>sp|P20486|CKS1_YEAST Cyclin-dependent kinases regulatory subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CKS1 PE=1
SV=1
Length = 150
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 9/68 (13%)
Query: 84 DDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTH---------LMTETEWRNLGVQQSPGW 134
D I YS +Y DDNY YRHVMLP + K +P + ++TE EWR LG+ QS GW
Sbjct: 26 DSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGW 85
Query: 135 IHYMLHLP 142
HY H P
Sbjct: 86 EHYECHAP 93
>sp|B0G102|CKS1_DICDI Cyclin-dependent kinases regulatory subunit OS=Dictyostelium
discoideum GN=cks1 PE=3 SV=1
Length = 82
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 38/55 (69%)
Query: 88 YSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLP 142
YS KY DD Y YRHV+LP +++ +P+ L+TE E R LG++QS GW HY H P
Sbjct: 7 YSSKYYDDKYEYRHVILPSEISSLIPRDVLLTEDECRKLGIRQSDGWEHYANHKP 61
>sp|P08463|CKS1_SCHPO Cyclin-dependent kinases regulatory subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=suc1 PE=1 SV=3
Length = 113
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 9/68 (13%)
Query: 84 DDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTH---------LMTETEWRNLGVQQSPGW 134
D I YS +Y DD Y YRHVMLP + K +P + ++ E EWR LG+ QS GW
Sbjct: 23 DQIHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLGW 82
Query: 135 IHYMLHLP 142
Y +H+P
Sbjct: 83 EMYEVHVP 90
>sp|Q8PS92|DTDA_METMA D-tyrosyl-tRNA(Tyr) deacylase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=dtdA PE=3 SV=1
Length = 297
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 106 PDLAKQVPKTHLMTETEWRNL 126
PDLA Q K HL+ TEW+NL
Sbjct: 21 PDLASQNIKNHLLNLTEWKNL 41
>sp|P42254|ABFA_ASPNG Alpha-N-arabinofuranosidase A OS=Aspergillus niger GN=abfA PE=1
SV=1
Length = 628
Score = 31.6 bits (70), Expect = 3.7, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 108 LAKQVPKTHLMTETEWRN--LGVQQSPGWIHYMLHLPGNENWVKNRYETLVRLRGKRDFS 165
+A P L+ T+W +G QSPG I E + +NR +T+ + DF
Sbjct: 482 MAAYAPLLQLINSTQWTPDLIGYTQSPGDIFLSTSYYVQEMFSRNRGDTIKEVTSDSDFG 541
Query: 166 VLSQQDKQGGHVGYARLKCCEHHKRGSTQDLKI 198
L G Y +L + TQDL +
Sbjct: 542 PLYWVASSAGDSYYVKLA----NYGSETQDLTV 570
>sp|A2Q7E0|ABFA_ASPNC Probable alpha-N-arabinofuranosidase A OS=Aspergillus niger (strain
CBS 513.88 / FGSC A1513) GN=abfA PE=3 SV=1
Length = 628
Score = 31.2 bits (69), Expect = 4.6, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 108 LAKQVPKTHLMTETEWRN--LGVQQSPGWIHYMLHLPGNENWVKNRYETLVRLRGKRDFS 165
+A P L+ T+W +G QSPG I E + +NR +T+ + DF
Sbjct: 482 MAAYAPLLQLINSTQWTPDLIGYTQSPGDIFLSTSYYVQEMFSRNRGDTIKEVTSDSDFG 541
Query: 166 VLSQQDKQGGHVGYARLKCCEHHKRGSTQDLKI 198
L G Y +L + TQDL +
Sbjct: 542 PLYWVASSAGDSYYMKLA----NYGSETQDLTV 570
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,028,885
Number of Sequences: 539616
Number of extensions: 3316903
Number of successful extensions: 5741
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5698
Number of HSP's gapped (non-prelim): 46
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)