Query psy4005
Match_columns 202
No_of_seqs 104 out of 188
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 22:58:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cks_A Cyclin-dependent kinase 100.0 1.1E-47 3.9E-52 285.9 5.0 77 81-157 1-77 (79)
2 3qy2_A Cyclin-dependent kinase 100.0 5.7E-44 2E-48 281.7 5.6 82 75-156 17-107 (117)
3 1puc_A P13SUC1, P13; cell cycl 100.0 1.6E-44 5.5E-49 280.6 1.2 77 81-157 19-104 (105)
4 1qb3_A Cyclin-dependent kinase 100.0 3E-42 1E-46 281.0 4.9 79 80-158 22-109 (150)
5 1cks_A Cyclin-dependent kinase 88.4 0.11 3.8E-06 38.6 0.6 15 14-28 62-76 (79)
6 1qb3_A Cyclin-dependent kinase 80.3 0.41 1.4E-05 39.3 0.5 13 14-26 93-105 (150)
7 1x0g_A ISCA; [2Fe-2S], biosynt 15.9 62 0.0021 23.4 1.6 18 18-37 89-106 (112)
8 1r94_A Protein YFHF; tetrameri 15.9 59 0.002 23.9 1.5 18 18-37 87-104 (118)
9 1yel_A AT1G16640; CESG, protei 14.9 13 0.00044 26.6 -2.3 51 102-152 24-89 (104)
10 1nwb_A Hypothetical protein AQ 13.2 63 0.0021 24.0 1.0 17 18-36 95-111 (124)
No 1
>1cks_A Cyclin-dependent kinase subunit, type 2; cell division; 2.10A {Homo sapiens} SCOP: d.97.1.1 PDB: 1buh_B 1dks_A 1dkt_A* 2ast_C* 2ass_C*
Probab=100.00 E-value=1.1e-47 Score=285.86 Aligned_cols=77 Identities=57% Similarity=0.940 Sum_probs=72.9
Q ss_pred CCCCCeeecCCcCCCceeEEEEEcChHHHhhCCCCCCCCHHHHhhhccccCCCeeEeeecCCCceeEEEeccccccc
Q psy4005 81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNRYETLVR 157 (202)
Q Consensus 81 M~~~~I~YS~KY~DD~YEYRHViLPkel~K~VPK~rLLsE~EWR~LGIQQS~GW~HYmiHkPEPHILLFRRPl~~~~ 157 (202)
|+.++|+||+||+||+|||||||||++++|+||+++||||+|||+||||||+||+|||+|+|||||||||||++.++
T Consensus 1 m~~~~I~YS~kY~Dd~yeYRhViLpke~~k~vpk~~LlsE~EWR~LGIqqS~GW~Hy~ih~pEphiLlFRRp~~~~~ 77 (79)
T 1cks_A 1 MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEPHILLFRRPLPKDQ 77 (79)
T ss_dssp -CCCCCEECCCEECSSCEECCEECCHHHHHTSCSSSCCCHHHHHHHTCCCCTTCCCCBCCCCCCCCCCCCCCCCC--
T ss_pred CCCCCcEECCCccCCCeEEEEEEcCHHHHHhCCcccccCHHHHHHhCcccCCCeEEEEecCCCCeEEEEeccCCCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999998754
No 2
>3qy2_A Cyclin-dependent kinases regulatory subunit; protein kinase activator, ubiquitin binding, transcription, cell cycle, transferase RE; HET: FLC; 2.59A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-44 Score=281.73 Aligned_cols=82 Identities=40% Similarity=0.684 Sum_probs=74.6
Q ss_pred ccccccCCCCCeeecCCcCCCceeEEEEEcChHHHhhCCCC---------CCCCHHHHhhhccccCCCeeEeeecCCCce
Q psy4005 75 SGKTTTMSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKT---------HLMTETEWRNLGVQQSPGWIHYMLHLPGNE 145 (202)
Q Consensus 75 ~~k~t~M~~~~I~YS~KY~DD~YEYRHViLPkel~K~VPK~---------rLLsE~EWR~LGIQQS~GW~HYmiHkPEPH 145 (202)
..+......++|+||+||+||+||||||||||+++|++|++ +||||+|||+||||||+||+|||+|+||||
T Consensus 17 ~r~~~~~~~~~I~YS~KY~Dd~yEYRHViLPke~~k~iPk~~~~~~~g~~rLLsE~EWR~LGIqqS~GW~HY~ih~pEPh 96 (117)
T 3qy2_A 17 ERARVLEFQDSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGWEHYECHAAEPH 96 (117)
T ss_dssp HHHHHHTTGGGCEECCCEECSSEEEEEEECCGGGGGGSCGGGBCTTTSSBCCCCHHHHHHTTCCCCSSCEEECCTTSCTT
T ss_pred HHHHHHhhhccceecCCccCCCeEEEEEEcCHHHHHhCchhhcccccccceecCHHHHHHhccccCCCcEEeeecCCCCe
Confidence 34444556789999999999999999999999999999987 899999999999999999999999999999
Q ss_pred eEEEecccccc
Q psy4005 146 NWVKNRYETLV 156 (202)
Q Consensus 146 ILLFRRPl~~~ 156 (202)
|||||||++..
T Consensus 97 ILLFRRp~~~~ 107 (117)
T 3qy2_A 97 ILLFKRPLNYE 107 (117)
T ss_dssp EEEEEEECC--
T ss_pred EEEEecCCCCC
Confidence 99999999876
No 3
>1puc_A P13SUC1, P13; cell cycle, domain swapping, strand-exchanged dimer, binding protein; HET: CPS; 1.95A {Schizosaccharomyces pombe} SCOP: d.97.1.1 PDB: 1sce_A
Probab=100.00 E-value=1.6e-44 Score=280.57 Aligned_cols=77 Identities=40% Similarity=0.757 Sum_probs=71.6
Q ss_pred CCCCCeeecCCcCCCceeEEEEEcChHHHhhCCCC---------CCCCHHHHhhhccccCCCeeEeeecCCCceeEEEec
Q psy4005 81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKT---------HLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNR 151 (202)
Q Consensus 81 M~~~~I~YS~KY~DD~YEYRHViLPkel~K~VPK~---------rLLsE~EWR~LGIQQS~GW~HYmiHkPEPHILLFRR 151 (202)
+..++|+||+||+||+|||||||||++++|.+|++ +||||+|||+||||||+||+|||+|+||||||||||
T Consensus 19 ~~~~~I~YS~kY~Dd~yEYRHViLPke~~k~ipk~~~~~~~gt~rLLtE~EWR~LGIqqS~GW~Hy~ih~pEPhiLLFRR 98 (105)
T 1puc_A 19 PFIDQIHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLGWEMYEVHVPEPHILLFKR 98 (105)
T ss_dssp HHHTTCEECCCEECSSCEECCEECCHHHHTTSCGGGBCTTTSSBCCCCHHHHHHTTCCCCSSCCCCCCCCCCTTCCCCCC
T ss_pred hcccCceeCCcccCCCeEEEEEEcCHHHHHhCcccccccccccccccCHHHHHHhCcccCCCcEEEeecCCCCeEEEEec
Confidence 34689999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred cccccc
Q psy4005 152 YETLVR 157 (202)
Q Consensus 152 Pl~~~~ 157 (202)
|++..+
T Consensus 99 p~~~~~ 104 (105)
T 1puc_A 99 EKDYQM 104 (105)
T ss_dssp CCC---
T ss_pred cCCCCC
Confidence 998753
No 4
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=100.00 E-value=3e-42 Score=280.98 Aligned_cols=79 Identities=43% Similarity=0.733 Sum_probs=74.3
Q ss_pred cCCCCCeeecCCcCCCceeEEEEEcChHHHhhCCCC---------CCCCHHHHhhhccccCCCeeEeeecCCCceeEEEe
Q psy4005 80 TMSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKT---------HLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKN 150 (202)
Q Consensus 80 ~M~~~~I~YS~KY~DD~YEYRHViLPkel~K~VPK~---------rLLsE~EWR~LGIQQS~GW~HYmiHkPEPHILLFR 150 (202)
.+..++|+||+||+||+|||||||||++++|.+|++ |||||+|||+||||||+||+|||+|+|||||||||
T Consensus 22 ~~~~~~I~YS~KY~Dd~YEYRHViLPke~~k~iPk~y~~~~~gt~rLLtE~EWR~LGIqQS~GW~HYmih~PEPhILLFR 101 (150)
T 1qb3_A 22 LEFQDSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGWEHYECHAPEPHILLFK 101 (150)
T ss_dssp GGGGGGCEECCCEECSSEEEEEEECCHHHHHTSCGGGBCTTTSSBCCCCHHHHHHTTCCCCTTCEEESCCCCCTTEEEEE
T ss_pred HHHhhcceeccceecCceeEEEEecCHHHHhhccccccccccccccCCCHHHHHHHccccCcCcEEeeecCCCCcEEEec
Confidence 334688999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred cccccccC
Q psy4005 151 RYETLVRL 158 (202)
Q Consensus 151 RPl~~~~l 158 (202)
||++.++.
T Consensus 102 Rpl~~~~~ 109 (150)
T 1qb3_A 102 RPLNYEAE 109 (150)
T ss_dssp EETTHHHH
T ss_pred CCCCCCCC
Confidence 99988743
No 5
>1cks_A Cyclin-dependent kinase subunit, type 2; cell division; 2.10A {Homo sapiens} SCOP: d.97.1.1 PDB: 1buh_B 1dks_A 1dkt_A* 2ast_C* 2ass_C*
Probab=88.44 E-value=0.11 Score=38.63 Aligned_cols=15 Identities=60% Similarity=1.046 Sum_probs=11.9
Q ss_pred ecceEEeeeCCCCCC
Q psy4005 14 LEPHVLLFRRPKQPT 28 (202)
Q Consensus 14 ~~~~~~~~~~~~~~~ 28 (202)
-|||+||||||..-.
T Consensus 62 pEphiLlFRRp~~~~ 76 (79)
T 1cks_A 62 PEPHILLFRRPLPKD 76 (79)
T ss_dssp CCCCCCCCCCCCCC-
T ss_pred CCCeEEEEeccCCCC
Confidence 489999999997543
No 6
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=80.32 E-value=0.41 Score=39.28 Aligned_cols=13 Identities=62% Similarity=1.193 Sum_probs=11.1
Q ss_pred ecceEEeeeCCCC
Q psy4005 14 LEPHVLLFRRPKQ 26 (202)
Q Consensus 14 ~~~~~~~~~~~~~ 26 (202)
-|||+||||||+.
T Consensus 93 PEPhILLFRRpl~ 105 (150)
T 1qb3_A 93 PEPHILLFKRPLN 105 (150)
T ss_dssp CCTTEEEEEEETT
T ss_pred CCCcEEEecCCCC
Confidence 3999999999963
No 7
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}
Probab=15.93 E-value=62 Score=23.36 Aligned_cols=18 Identities=28% Similarity=0.840 Sum_probs=12.1
Q ss_pred EEeeeCCCCCCCcccccCCC
Q psy4005 18 VLLFRRPKQPTPTSCSCGNN 37 (202)
Q Consensus 18 ~~~~~~~~~~~~~~~~~gn~ 37 (202)
-+.|..|.. ..+|.||..
T Consensus 89 gF~~~nPna--~~~CgCG~S 106 (112)
T 1x0g_A 89 AFRFHNPNA--SQTCGCGMA 106 (112)
T ss_dssp EEEEECTTC--SEECSSSSE
T ss_pred EEEEeCCCC--CcCCCCCCc
Confidence 456666654 468999973
No 8
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Probab=15.91 E-value=59 Score=23.90 Aligned_cols=18 Identities=28% Similarity=0.778 Sum_probs=6.4
Q ss_pred EEeeeCCCCCCCcccccCCC
Q psy4005 18 VLLFRRPKQPTPTSCSCGNN 37 (202)
Q Consensus 18 ~~~~~~~~~~~~~~~~~gn~ 37 (202)
.+.|..|.. ..+|.||..
T Consensus 87 gF~~~NPna--~~~CgCG~S 104 (118)
T 1r94_A 87 GFKFTNPNV--KDECGCGES 104 (118)
T ss_dssp EEEEECTTC--CC-------
T ss_pred ceEEeCCCC--CCCCCCCCC
Confidence 355666665 368999974
No 9
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=14.88 E-value=13 Score=26.57 Aligned_cols=51 Identities=14% Similarity=0.288 Sum_probs=33.3
Q ss_pred EEcChHHHhhCCCC-----CCCCH--HHHh-hh-----ccccCCCeeEeeecCC--CceeEEEecc
Q psy4005 102 VMLPPDLAKQVPKT-----HLMTE--TEWR-NL-----GVQQSPGWIHYMLHLP--GNENWVKNRY 152 (202)
Q Consensus 102 ViLPkel~K~VPK~-----rLLsE--~EWR-~L-----GIQQS~GW~HYmiHkP--EPHILLFRRP 152 (202)
..||+..++..+.. .|.++ ..|+ .+ ++-.+.||.-|...+. +-.+|+|+.-
T Consensus 24 L~IP~~F~~~~~~~~~~~v~L~~~~G~~W~v~~~~~~~~~~l~~GW~~Fv~~~~L~~GD~lvF~~~ 89 (104)
T 1yel_A 24 LEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDGKYLQFIYD 89 (104)
T ss_dssp EECCHHHHTTCCCCCCSEEEEEETTSCEEEEEEEEETTEEEECTTHHHHHHHHTCCTTCEEEEEEC
T ss_pred EECCHHHHHhcCccCCCEEEEECCCCCEEEEEEEEECCcEEEccChHHHHHHcCCCCCCEEEEEEc
Confidence 57888888877642 23322 3465 33 4567999999975544 5678888863
No 10
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1
Probab=13.16 E-value=63 Score=24.01 Aligned_cols=17 Identities=35% Similarity=0.856 Sum_probs=4.5
Q ss_pred EEeeeCCCCCCCcccccCC
Q psy4005 18 VLLFRRPKQPTPTSCSCGN 36 (202)
Q Consensus 18 ~~~~~~~~~~~~~~~~~gn 36 (202)
.+.|..|.. ..+|.||.
T Consensus 95 gF~~~NPna--~~~CgCG~ 111 (124)
T 1nwb_A 95 GFTIRNPNA--TGSCGCGS 111 (124)
T ss_dssp EEEEECC------------
T ss_pred eEEEeCCCC--CcCCCCCC
Confidence 456777665 36899996
Done!