RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4005
         (202 letters)



>gnl|CDD|144631 pfam01111, CKS, Cyclin-dependent kinase regulatory subunit. 
          Length = 70

 Score =  114 bits (288), Expect = 1e-33
 Identities = 37/58 (63%), Positives = 48/58 (82%)

Query: 85  DIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLP 142
           +I YSDKY DD Y YRHV+LP ++AK++PK  L++E EWR LG+QQSPGW+HYM+H P
Sbjct: 1   EIYYSDKYFDDYYEYRHVILPKEIAKKIPKDKLLSEMEWRGLGIQQSPGWVHYMVHEP 58



 Score = 28.7 bits (65), Expect = 0.40
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 11 YYYLEPHVLLFRRPK 25
           +  EPH+LLFRRP 
Sbjct: 55 VHEPEPHILLFRRPL 69


>gnl|CDD|198152 smart01084, CKS, Cyclin-dependent kinase regulatory subunit.
           Cyclin-dependent kinase regulatory subunit.
          Length = 70

 Score =  101 bits (254), Expect = 1e-28
 Identities = 38/58 (65%), Positives = 45/58 (77%)

Query: 85  DIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLP 142
            I YSDKYEDD Y YRHV+LP ++AK VPK  L++E EWR LG+QQS GW HYM+H P
Sbjct: 1   PIYYSDKYEDDEYEYRHVILPKEIAKLVPKIRLLSENEWRKLGIQQSKGWEHYMIHKP 58



 Score = 27.7 bits (62), Expect = 1.2
 Identities = 9/11 (81%), Positives = 10/11 (90%)

Query: 15 EPHVLLFRRPK 25
          EPH+LLFRRP 
Sbjct: 59 EPHILLFRRPL 69


>gnl|CDD|185632 PTZ00453, PTZ00453, cyclin-dependent kinase; Provisional.
          Length = 96

 Score = 97.0 bits (241), Expect = 2e-26
 Identities = 38/60 (63%), Positives = 45/60 (75%)

Query: 83  ADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLP 142
              I YSDKY DD Y YRHV+LP D A+ VP++ LM+E+EWR LGVQQS GW HYM+H P
Sbjct: 25  QSKILYSDKYYDDEYEYRHVILPKDFARLVPRSRLMSESEWRQLGVQQSVGWRHYMIHKP 84



 Score = 28.4 bits (63), Expect = 1.1
 Identities = 10/11 (90%), Positives = 11/11 (100%)

Query: 15 EPHVLLFRRPK 25
          EPHVLLF+RPK
Sbjct: 85 EPHVLLFKRPK 95


>gnl|CDD|215027 PLN00010, PLN00010, cyclin-dependent kinases regulatory subunit;
           Provisional.
          Length = 86

 Score = 94.2 bits (234), Expect = 1e-25
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query: 86  IRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLP 142
           I+YS+KY DD Y YRHV+LPP++AK +PK  L++E EWR +GVQQS GW+HY +H P
Sbjct: 4   IQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60



 Score = 26.4 bits (58), Expect = 3.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)

Query: 15 EPHVLLFRRPK 25
          EPH++LFRRP 
Sbjct: 61 EPHIMLFRRPL 71


>gnl|CDD|216137 pfam00822, PMP22_Claudin, PMP-22/EMP/MP20/Claudin family. 
          Length = 161

 Score = 28.9 bits (65), Expect = 1.3
 Identities = 5/54 (9%), Positives = 14/54 (25%)

Query: 32  CSCGNNSVQEESAYGKFEFCRAAAAPSLIPVSSCLLAFTVSSFSGKTTTMSADD 85
            +               +  +A  A  ++ +   +++  V  F   T       
Sbjct: 47  TTQSCTGQISCKVLELNDALQAVQALMILSIILGIISLIVFFFQLFTMRKGGRF 100


>gnl|CDD|236673 PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha;
           Reviewed.
          Length = 1021

 Score = 27.7 bits (62), Expect = 4.7
 Identities = 7/34 (20%), Positives = 9/34 (26%)

Query: 107 DLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           D  +      L  E    NL        + Y L 
Sbjct: 219 DFDEDYCDATLSCEVVLENLAASPVVTTLEYTLF 252


>gnl|CDD|115320 pfam06652, Methuselah_N, Methuselah N-terminus.  This family
           represents the N-terminal region of the Drosophila
           specific Methuselah protein. Drosophila Methuselah (Mth)
           mutants have a 35% increase in average lifespan and
           increased resistance to several forms of stress,
           including heat, starvation, and oxidative damage. The
           protein affected by this mutation is related to G
           protein-coupled receptors of the secretin receptor
           family. Mth, like secretin receptor family members, has
           a large N-terminal ectodomain, which may constitute the
           ligand binding site. This family is found in conjunction
           with pfam00002.
          Length = 179

 Score = 26.2 bits (58), Expect = 8.9
 Identities = 6/24 (25%), Positives = 15/24 (62%)

Query: 85  DIRYSDKYEDDNYIYRHVMLPPDL 108
           +I  S++  + +Y+Y  +++P  L
Sbjct: 8   NISGSERLSNGSYLYEGLVIPAHL 31


>gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein.
          Length = 1135

 Score = 26.9 bits (60), Expect = 9.5
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 53  AAAAPSLIPVSSCLLAFTVSSFSGKTTTMSADDIRYSDKYEDDNYIYRHVMLPP 106
           +A  PS    S   + F   + SG+  ++S DD+  S +    +Y+   V +PP
Sbjct: 19  SAGPPSNNSSSPQSVKFARRTSSGRYVSLSRDDLDLSGELSSSDYLNYTVHIPP 72


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0716    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,156,836
Number of extensions: 882431
Number of successful extensions: 626
Number of sequences better than 10.0: 1
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 16
Length of query: 202
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 110
Effective length of database: 6,857,034
Effective search space: 754273740
Effective search space used: 754273740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)