RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4005
(202 letters)
>1cks_A Cyclin-dependent kinase subunit, type 2; cell division; 2.10A {Homo
sapiens} SCOP: d.97.1.1 PDB: 1buh_B 1dks_A 1dkt_A*
2ast_C* 2ass_C*
Length = 79
Score = 117 bits (296), Expect = 4e-35
Identities = 43/62 (69%), Positives = 51/62 (82%)
Query: 81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
M+ I YSDKY D++Y YRHVMLP +L+KQVPKTHLM+E EWR LGVQQS GW+HYM+H
Sbjct: 1 MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH 60
Query: 141 LP 142
P
Sbjct: 61 EP 62
Score = 28.6 bits (64), Expect = 0.37
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 15 EPHVLLFRRPKQPTP 29
EPH+LLFRRP
Sbjct: 63 EPHILLFRRPLPKDQ 77
>3qy2_A Cyclin-dependent kinases regulatory subunit; protein kinase
activator, ubiquitin binding, transcription, cell cycle,
transferase RE; HET: FLC; 2.59A {Saccharomyces
cerevisiae}
Length = 117
Score = 103 bits (259), Expect = 3e-29
Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 71 VSSFSGKTTTMSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTH---------LMTET 121
++ D I YS +Y DDNY YRHVMLP + K +P + ++TE
Sbjct: 13 LTDQERARVLEFQDSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTED 72
Query: 122 EWRNLGVQQSPGWIHYMLHLP 142
EWR LG+ QS GW HY H
Sbjct: 73 EWRGLGITQSLGWEHYECHAA 93
Score = 29.6 bits (66), Expect = 0.34
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 15 EPHVLLFRRPKQPTP 29
EPH+LLF+RP
Sbjct: 94 EPHILLFKRPLNYEA 108
>1puc_A P13SUC1, P13; cell cycle, domain swapping, strand-exchanged dimer,
binding protein; HET: CPS; 1.95A {Schizosaccharomyces
pombe} SCOP: d.97.1.1 PDB: 1sce_A
Length = 105
Score = 103 bits (257), Expect = 6e-29
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 83 ADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTH---------LMTETEWRNLGVQQSPG 133
D I YS +Y DD Y YRHVMLP + K +P + ++ E EWR LG+ QS G
Sbjct: 21 IDQIHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLG 80
Query: 134 WIHYMLHLP 142
W Y +H+P
Sbjct: 81 WEMYEVHVP 89
Score = 29.5 bits (66), Expect = 0.27
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 15 EPHVLLFRRPKQPTP 29
EPH+LLF+R K
Sbjct: 90 EPHILLFKREKDYQM 104
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis
domain swapping, cyclin-dependent KIN cycle; 3.00A
{Saccharomyces cerevisiae} SCOP: d.97.1.1
Length = 150
Score = 102 bits (255), Expect = 4e-28
Identities = 33/81 (40%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 71 VSSFSGKTTTMSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTH---------LMTET 121
++ D I YS +Y DDNY YRHVMLP + K +P + ++TE
Sbjct: 13 LTDQERARVLEFQDSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTED 72
Query: 122 EWRNLGVQQSPGWIHYMLHLP 142
EWR LG+ QS GW HY H P
Sbjct: 73 EWRGLGITQSLGWEHYECHAP 93
Score = 29.3 bits (65), Expect = 0.55
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 15 EPHVLLFRRPKQPTPTS 31
EPH+LLF+RP
Sbjct: 94 EPHILLFKRPLNYEAEL 110
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.76
Identities = 29/194 (14%), Positives = 53/194 (27%), Gaps = 61/194 (31%)
Query: 22 RRPKQPTPTSCSCGNNSVQEESAYGKFEFCRAAAAPSLIPVSSCLLAFTVSSF------- 74
R+P T + + + K+ R + + LL +
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL---QPYLKLRQALLELRPAKNVLIDGVL 159
Query: 75 -SGKTTTMSADDIRYSDKYED--DNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQS 131
SGKT ++ D S K + D I+ W NL S
Sbjct: 160 GSGKTW-VALDVCL-SYKVQCKMDFKIF-----------------------WLNLKNCNS 194
Query: 132 PGWIHYML-------------------HLPGNENWVKNRYETLVRLRG-KRDFSVLSQ-Q 170
P + ML ++ + ++ L++ + + VL Q
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 171 DKQGGHVGYARLKC 184
+ + L C
Sbjct: 255 NAK--AWNAFNLSC 266
Score = 27.9 bits (61), Expect = 2.7
Identities = 14/120 (11%), Positives = 34/120 (28%), Gaps = 51/120 (42%)
Query: 87 RYS--DKYE--------DDNYIYRHVMLPPDLAKQVPKTHL----MTE--TEWRNLGVQQ 130
Y+ ++ D Y Y H+ HL E T +R +
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGH-----------HLKNIEHPERMTLFRMV---- 496
Query: 131 SPGWIHYMLHLPGNENWVKN--RYETLVRLRGKRDFSVLSQQDKQGGHVGYARLKCCEHH 188
++ + +++ R+++ + L Q ++ C++
Sbjct: 497 ------FL-----DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-------CDND 538
>1fjr_A Methuselah ectodomain; GPCR, G protein-coupled receptor, signaling
PROT; HET: NAG; 2.30A {Drosophila melanogaster} SCOP:
b.102.1.1 PDB: 2pzx_A
Length = 195
Score = 26.2 bits (57), Expect = 7.2
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 85 DIRYSDKYEDDNYIYRHVMLPPDL 108
DI + K ++ +Y++ +++P L
Sbjct: 12 DISAAQKLQNGSYLFEGLLVPAIL 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.429
Gapped
Lambda K H
0.267 0.0558 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,126,025
Number of extensions: 166272
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 16
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.3 bits)