RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4005
         (202 letters)



>d1cksa_ d.97.1.1 (A:) CksHs2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 74

 Score =  111 bits (280), Expect = 3e-33
 Identities = 42/61 (68%), Positives = 50/61 (81%)

Query: 82  SADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHL 141
           +   I YSDKY D++Y YRHVMLP +L+KQVPKTHLM+E EWR LGVQQS GW+HYM+H 
Sbjct: 1   AHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHE 60

Query: 142 P 142
           P
Sbjct: 61  P 61



 Score = 26.9 bits (60), Expect = 0.41
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 11 YYYLEPHVLLFRRP 24
           +  EPH+LLFRRP
Sbjct: 58 IHEPEPHILLFRRP 71


>d1puca_ d.97.1.1 (A:) suc1 {Fission yeast (Schizosaccharomyces
           pombe) [TaxId: 4896]}
          Length = 101

 Score =  106 bits (267), Expect = 8e-31
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 9/69 (13%)

Query: 83  ADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTH---------LMTETEWRNLGVQQSPG 133
            D I YS +Y DD Y YRHVMLP  + K +P  +         ++ E EWR LG+ QS G
Sbjct: 21  IDQIHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLG 80

Query: 134 WIHYMLHLP 142
           W  Y +H+P
Sbjct: 81  WEMYEVHVP 89



 Score = 29.4 bits (66), Expect = 0.11
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 11  YYYLEPHVLLFRRPK 25
            +  EPH+LLF+R K
Sbjct: 86  VHVPEPHILLFKREK 100


>d1qb3a_ d.97.1.1 (A:) cks1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 113

 Score =  106 bits (266), Expect = 1e-30
 Identities = 33/69 (47%), Positives = 40/69 (57%), Gaps = 9/69 (13%)

Query: 83  ADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTH---------LMTETEWRNLGVQQSPG 133
            D I YS +Y DDNY YRHVMLP  + K +P  +         ++TE EWR LG+ QS G
Sbjct: 20  QDSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLG 79

Query: 134 WIHYMLHLP 142
           W HY  H P
Sbjct: 80  WEHYECHAP 88



 Score = 29.4 bits (66), Expect = 0.10
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 11  YYYLEPHVLLFRRPKQPTP 29
            +  EPH+LLF+RP     
Sbjct: 85  CHAPEPHILLFKRPLNYEA 103


>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon
           Sulfolobus shibatae [TaxId: 2286]}
          Length = 164

 Score = 25.8 bits (57), Expect = 3.0
 Identities = 6/27 (22%), Positives = 14/27 (51%)

Query: 115 THLMTETEWRNLGVQQSPGWIHYMLHL 141
             ++ E +W+  G++     +  M+HL
Sbjct: 83  WKVVEELDWKRYGIESDQYQMVVMVHL 109


>d1flma_ b.45.1.1 (A:) FMN-binding protein {Desulfovibrio vulgaris,
           strain Miyazaki F [TaxId: 881]}
          Length = 122

 Score = 25.3 bits (55), Expect = 3.4
 Identities = 10/46 (21%), Positives = 15/46 (32%)

Query: 103 MLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLPGNENWV 148
           MLP    + +    ++        G      W  Y+  L GN   V
Sbjct: 1   MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWNSYLKVLDGNRIVV 46


>d1fjra_ b.102.1.1 (A:) Methuselah ectodomain {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 188

 Score = 25.6 bits (56), Expect = 3.6
 Identities = 6/24 (25%), Positives = 15/24 (62%)

Query: 85  DIRYSDKYEDDNYIYRHVMLPPDL 108
           DI  + K ++ +Y++  +++P  L
Sbjct: 12  DISAAQKLQNGSYLFEGLLVPAIL 35


>d1tvia_ d.92.1.15 (A:) Hypothetical protein TM1509 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 150

 Score = 25.0 bits (54), Expect = 5.5
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 8/51 (15%)

Query: 94  DDNYIYRHVMLPPDLAKQVPKTHLMT-ETEWRNLGVQQSPGWIHYMLHLPG 143
            +  +Y  + + P + ++  +    T E E   +        IH +LHL G
Sbjct: 66  MEEDVYGEIYVCPLIVEENAREFNNTFEKELLEV-------VIHGILHLAG 109


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0684    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 782,203
Number of extensions: 34252
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 11
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)