BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4009
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JYC|A Chain A, Crystal Structure Of The Eukaryotic Strong
Inward-Rectifier K+ Channel Kir2.2 At 3.1 Angstrom
Resolution
pdb|3SPC|A Chain A, Inward Rectifier Potassium Channel Kir2.2 In Complex With
Dioctanoylglycerol Pyrophosphate (Dgpp)
pdb|3SPI|A Chain A, Inward Rectifier Potassium Channel Kir2.2 In Complex With
Pip2
Length = 343
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 200/318 (62%), Gaps = 56/318 (17%)
Query: 56 KHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYT 115
K+G CNV N+ + +RY+ D+FTT VD +WR+ LL+F+L FL+SWL+F +++WLI
Sbjct: 13 KNGQCNVEFTNMDDKPQRYIADMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLIFWLIALI 72
Query: 116 HGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQS 175
HGDL+ G+ T+ PCV ++ F + FLFS+ETQ TIGYG + VTEECP A+F++ +QS
Sbjct: 73 HGDLENPG-GDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQS 131
Query: 176 IVGVMIQAFMVGIVFAKLSRPKKRTQTLLFS----------------RINCLQTS--VE- 216
IVG +I +FM+G + AK++RPKKR QTLLFS R+ L+ S VE
Sbjct: 132 IVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMRDGKLCLMWRVGNLRKSHIVEA 191
Query: 217 ---------------------------------DKIFFIWPTTIVHKINPMSPLYTLSAA 243
D+IF + P TI+H+IN SPL+ +S
Sbjct: 192 HVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLVSPITILHEINEDSPLFGISRQ 251
Query: 244 DMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGL 303
D+ + FEIVVILEG++E+T MTTQARSSYL +EILWGHRFE ++ +E +++V+Y
Sbjct: 252 DLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVLF--EEKNQYKVDYSH 309
Query: 304 FNNTYEV-HTPLCSAQAL 320
F+ TYEV TP CSA+ L
Sbjct: 310 FHKTYEVPSTPRCSAKDL 327
>pdb|3SPH|A Chain A, Inward Rectifier Potassium Channel Kir2.2 I223l Mutant In
Complex With Pip2
pdb|3SPJ|A Chain A, Apo Inward Rectifier Potassium Channel Kir2.2 I223l Mutant
Length = 343
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 200/318 (62%), Gaps = 56/318 (17%)
Query: 56 KHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYT 115
K+G CNV N+ + +RY+ D+FTT VD +WR+ LL+F+L FL+SWL+F +++WLI
Sbjct: 13 KNGQCNVEFTNMDDKPQRYIADMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLIFWLIALI 72
Query: 116 HGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQS 175
HGDL+ G+ T+ PCV ++ F + FLFS+ETQ TIGYG + VTEECP A+F++ +QS
Sbjct: 73 HGDLENPG-GDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQS 131
Query: 176 IVGVMIQAFMVGIVFAKLSRPKKRTQTLLFS----------------RINCLQTS--VE- 216
IVG +I +FM+G + AK++RPKKR QTLLFS R+ L+ S VE
Sbjct: 132 IVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMRDGKLCLMWRVGNLRKSHLVEA 191
Query: 217 ---------------------------------DKIFFIWPTTIVHKINPMSPLYTLSAA 243
D+IF + P TI+H+IN SPL+ +S
Sbjct: 192 HVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLVSPITILHEINEDSPLFGISRQ 251
Query: 244 DMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGL 303
D+ + FEIVVILEG++E+T MTTQARSSYL +EILWGHRFE ++ +E +++V+Y
Sbjct: 252 DLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVLF--EEKNQYKVDYSH 309
Query: 304 FNNTYEV-HTPLCSAQAL 320
F+ TYEV TP CSA+ L
Sbjct: 310 FHKTYEVPSTPRCSAKDL 327
>pdb|3SPG|A Chain A, Inward Rectifier Potassium Channel Kir2.2 R186a Mutant In
Complex With Pip2
Length = 343
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 143/318 (44%), Positives = 199/318 (62%), Gaps = 56/318 (17%)
Query: 56 KHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYT 115
K+G CNV N+ + +RY+ D+FTT VD +WR+ LL+F+L FL+SWL+F +++WLI
Sbjct: 13 KNGQCNVEFTNMDDKPQRYIADMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLIFWLIALI 72
Query: 116 HGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQS 175
HGDL+ G+ T+ PCV ++ F + FLFS+ETQ TIGYG + VTEECP A+F++ +QS
Sbjct: 73 HGDLENPG-GDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQS 131
Query: 176 IVGVMIQAFMVGIVFAKLSRPKKRTQTLLFS----------------RINCLQTS--VE- 216
IVG +I +FM+G + AK++ PKKR QTLLFS R+ L+ S VE
Sbjct: 132 IVGCIIDSFMIGAIMAKMAAPKKRAQTLLFSHNAVVAMRDGKLCLMWRVGNLRKSHIVEA 191
Query: 217 ---------------------------------DKIFFIWPTTIVHKINPMSPLYTLSAA 243
D+IF + P TI+H+IN SPL+ +S
Sbjct: 192 HVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLVSPITILHEINEDSPLFGISRQ 251
Query: 244 DMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGL 303
D+ + FEIVVILEG++E+T MTTQARSSYL +EILWGHRFE ++ +E +++V+Y
Sbjct: 252 DLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVLF--EEKNQYKVDYSH 309
Query: 304 FNNTYEV-HTPLCSAQAL 320
F+ TYEV TP CSA+ L
Sbjct: 310 FHKTYEVPSTPRCSAKDL 327
>pdb|3SYC|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier
K+ Channel Girk2 (Kir3.2) D228n Mutant
Length = 340
Score = 260 bits (664), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 193/320 (60%), Gaps = 57/320 (17%)
Query: 56 KHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYT 115
K G CNV NV + RYL DIFTTLVD +WR+ LL+F + + ++WL F ++WWLI Y
Sbjct: 12 KDGKCNVHHGNV-RETYRYLTDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYI 70
Query: 116 HGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQS 175
GD+D + + +WTPCVT+++ F S FLFS+ET+ TIGYG + +T++CPE I +L +QS
Sbjct: 71 RGDMDHIE--DPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQS 128
Query: 176 IVGVMIQAFMVGIVFAKLSRPKKRTQTLLFS----------------RINCLQTS----- 214
++G ++ AFMVG +F K+S+PKKR +TL+FS R+ L+ S
Sbjct: 129 VLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMRDGKLCLMFRVGNLRNSHIVEA 188
Query: 215 -------------------------------VEDKIFFIWPTTIVHKINPMSPLYTLSAA 243
+D++F + P I H+IN SP + +S A
Sbjct: 189 SIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQQSPFWEISKA 248
Query: 244 DMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGL 303
+ +E EIVVILEG++E+TGMT QARSSY+ +EILWG+RF +++ E G +EV+Y
Sbjct: 249 QLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTL--EDGFYEVDYNS 306
Query: 304 FNNTYEVHTPLCSAQALDQL 323
F+ TYE TP SA+ L +L
Sbjct: 307 FHETYETSTPSLSAKELAEL 326
>pdb|3SYA|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier
K+ Channel Girk2 (Kir3.2) In Complex With Sodium And
Pip2
pdb|3SYO|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier
K+ Channel Girk2 (Kir3.2) In Complex With Sodium
Length = 340
Score = 259 bits (663), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 193/320 (60%), Gaps = 57/320 (17%)
Query: 56 KHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYT 115
K G CNV NV + RYL DIFTTLVD +WR+ LL+F + + ++WL F ++WWLI Y
Sbjct: 12 KDGKCNVHHGNV-RETYRYLTDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYI 70
Query: 116 HGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQS 175
GD+D + + +WTPCVT+++ F S FLFS+ET+ TIGYG + +T++CPE I +L +QS
Sbjct: 71 RGDMDHIE--DPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQS 128
Query: 176 IVGVMIQAFMVGIVFAKLSRPKKRTQTLLFS----------------RINCLQTS----- 214
++G ++ AFMVG +F K+S+PKKR +TL+FS R+ L+ S
Sbjct: 129 VLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMRDGKLCLMFRVGDLRNSHIVEA 188
Query: 215 -------------------------------VEDKIFFIWPTTIVHKINPMSPLYTLSAA 243
+D++F + P I H+IN SP + +S A
Sbjct: 189 SIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQQSPFWEISKA 248
Query: 244 DMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGL 303
+ +E EIVVILEG++E+TGMT QARSSY+ +EILWG+RF +++ E G +EV+Y
Sbjct: 249 QLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTL--EDGFYEVDYNS 306
Query: 304 FNNTYEVHTPLCSAQALDQL 323
F+ TYE TP SA+ L +L
Sbjct: 307 FHETYETSTPSLSAKELAEL 326
>pdb|3SYP|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier
K+ Channel Girk2 (Kir3.2) R201a Mutant
pdb|3SYQ|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier
K+ Channel Girk2 (Kir3.2) R201a Mutant In Complex With
Pip2
pdb|3SYQ|B Chain B, Crystal Structure Of The G Protein-Gated Inward Rectifier
K+ Channel Girk2 (Kir3.2) R201a Mutant In Complex With
Pip2
Length = 340
Score = 257 bits (656), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 192/320 (60%), Gaps = 57/320 (17%)
Query: 56 KHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYT 115
K G CNV NV + RYL DIFTTLVD +WR+ LL+F + + ++WL F ++WWLI Y
Sbjct: 12 KDGKCNVHHGNV-RETYRYLTDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYI 70
Query: 116 HGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQS 175
GD+D + + +WTPCVT+++ F S FLFS+ET+ TIGYG + +T++CPE I +L +QS
Sbjct: 71 RGDMDHIE--DPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQS 128
Query: 176 IVGVMIQAFMVGIVFAKLSRPKKRTQTLLFS----------------RINCLQTS----- 214
++G ++ AFMVG +F K+S+PKK +TL+FS R+ L+ S
Sbjct: 129 VLGSIVNAFMVGCMFVKISQPKKAAETLVFSTHAVISMRDGKLCLMFRVGDLRNSHIVEA 188
Query: 215 -------------------------------VEDKIFFIWPTTIVHKINPMSPLYTLSAA 243
+D++F + P I H+IN SP + +S A
Sbjct: 189 SIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQQSPFWEISKA 248
Query: 244 DMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGL 303
+ +E EIVVILEG++E+TGMT QARSSY+ +EILWG+RF +++ E G +EV+Y
Sbjct: 249 QLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTL--EDGFYEVDYNS 306
Query: 304 FNNTYEVHTPLCSAQALDQL 323
F+ TYE TP SA+ L +L
Sbjct: 307 FHETYETSTPSLSAKELAEL 326
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 169 bits (427), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 113/325 (34%), Positives = 157/325 (48%), Gaps = 79/325 (24%)
Query: 56 KHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYT 115
K+G CNV N+ RYL D+FTTLVD +WRW + A+ FLL FA ++ L
Sbjct: 11 KNGRCNVQHGNLGSETSRYLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFATLYML---- 66
Query: 116 HGDLDKVNLGNATWTPCVTSIHS-FTSCFLFSVETQHTIGYGAKQVTEECPEAIF---IL 171
G+A P + F F FSVET T+GYG P+ ++ I
Sbjct: 67 ---------GSA---PIANQFPAGFGGAFFFSVETLATVGYGDMH-----PQTVYAHWIA 109
Query: 172 CLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFS----------------RINCLQTS- 214
L+ VG+ A G F K+S+PKKR +TL+FS R+ L+ S
Sbjct: 110 TLEIFVGMSSIALATGCAFIKMSQPKKRAETLMFSEHAVISMRDGKLTLMFRVGNLRNSH 169
Query: 215 -----------------------------------VEDKIFFIWPTTIVHKINPMSPLYT 239
D++F + P TI H I+ SP Y
Sbjct: 170 MVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYD 229
Query: 240 LSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEV 299
LS M E+FE+VVILEG++E+TGMT QAR+SY +E+LWGHRF ++S E G +V
Sbjct: 230 LSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISL--EEGFFKV 287
Query: 300 NYGLFNNTYEVHTPLCSAQALDQLL 324
+Y F+ T+EV TP S + +++L
Sbjct: 288 DYSQFHATFEVPTPPYSVKEQEEML 312
>pdb|2XKY|I Chain I, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain
pdb|2XKY|J Chain J, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain
pdb|2XKY|K Chain K, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain
pdb|2XKY|L Chain L, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain
Length = 309
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 78/105 (74%), Gaps = 3/105 (2%)
Query: 217 DKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPN 276
D+IF + P TIVH+I+ SPLY LS D+ FEIVVILEG++E+T MTTQ RSSYL N
Sbjct: 140 DRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLAN 199
Query: 277 EILWGHRFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 320
EILWGHR+E ++ +K ++V+Y F+ TYEV +TPLCSA+ L
Sbjct: 200 EILWGHRYEPVLFEEKHY--YKVDYSRFHKTYEVPNTPLCSARDL 242
>pdb|1U4F|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
pdb|1U4F|B Chain B, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
pdb|1U4F|C Chain C, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
pdb|1U4F|D Chain D, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
Length = 270
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 78/105 (74%), Gaps = 3/105 (2%)
Query: 217 DKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPN 276
D+IF + P TIVH+I+ SPLY LS D+ FEIVVILEG++E+T MTTQ RSSYL N
Sbjct: 101 DRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLAN 160
Query: 277 EILWGHRFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 320
EILWGHR+E ++ +K ++V+Y F+ TYEV +TPLCSA+ L
Sbjct: 161 EILWGHRYEPVLFEEKHY--YKVDYSRFHKTYEVPNTPLCSARDL 203
>pdb|2GIX|A Chain A, Cytoplasmic Domain Structure Of Kir2.1 Containing
Andersen's Mutation R218q And Rescue Mutation T309k
pdb|2GIX|B Chain B, Cytoplasmic Domain Structure Of Kir2.1 Containing
Andersen's Mutation R218q And Rescue Mutation T309k
pdb|2GIX|C Chain C, Cytoplasmic Domain Structure Of Kir2.1 Containing
Andersen's Mutation R218q And Rescue Mutation T309k
pdb|2GIX|D Chain D, Cytoplasmic Domain Structure Of Kir2.1 Containing
Andersen's Mutation R218q And Rescue Mutation T309k
Length = 208
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 77/105 (73%), Gaps = 3/105 (2%)
Query: 217 DKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPN 276
D+IF + P TIVH+I+ SPLY LS D+ FEIVVILEG++E+T MT Q RSSYL N
Sbjct: 96 DRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTKQCRSSYLAN 155
Query: 277 EILWGHRFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 320
EILWGHR+E ++ +E ++V+Y F+ TYEV +TPLCSA+ L
Sbjct: 156 EILWGHRYEPVLF--EEKHYYKVDYSRFHKTYEVPNTPLCSARDL 198
>pdb|3AGW|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of
G-Protein-Gated Inward Rectifier Potassium Channel
Kir3.2 In The Absence Of Na+
pdb|3AT8|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain
(Na+-Free Crystal Soaked In 10 Mm Barium Chloride)
pdb|3AT9|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain
(Na+-Free Crystal Soaked In 10 Mm Barium Chloride And 10
Mm Magnesium Chloride)
pdb|3ATA|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain
(Na+-Free Crystal Soaked In 10 Mm Barium Chloride And 10
Mm Spermine)
pdb|3ATB|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain
(Na+-Free Crystal Soaked In 10 Mm Gadolinium Chloride)
pdb|3ATD|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain
(Na+-Free Crystal Soaked In 10 Mm Gadolinium Chloride
And 10 Mm Magnesium Chloride)
pdb|3ATE|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain
(Na+-Free Crystal Soaked In 10 Mm Praseodymium (Iii)
Acetate)
pdb|3ATF|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain
(Na+-Free Crystal Soaked In 200 Mm Cesium Chloride)
Length = 208
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 99/158 (62%), Gaps = 7/158 (4%)
Query: 171 LCLQSIVGVMIQAFMV-GIVFAKLSRPKKRTQT----LLFSRINCLQTSVEDKIFFIWPT 225
LCL VG + + +V + AKL + K+ ++ L + IN + +D++F + P
Sbjct: 47 LCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPL 106
Query: 226 TIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFE 285
I H+IN SP + +S A + +E EIVVILEG++E+TGMT QARSSY+ +EILWG+RF
Sbjct: 107 IISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFT 166
Query: 286 TLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQL 323
+++ E G +EV+Y F+ TYE TP SA+ L +L
Sbjct: 167 PVLTL--EDGFYEVDYNSFHETYETSTPSLSAKELAEL 202
>pdb|2E4F|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of
G-Protein-Gated Inward Rectifier Potassium Channel
Kir3.2
Length = 208
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 99/158 (62%), Gaps = 7/158 (4%)
Query: 171 LCLQSIVGVMIQAFMV-GIVFAKLSRPKKRTQT----LLFSRINCLQTSVEDKIFFIWPT 225
LCL VG + + +V + AKL + K+ ++ L + IN + +D++F + P
Sbjct: 47 LCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPL 106
Query: 226 TIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFE 285
I H+IN SP + +S A + +E EIVVILEG++E+TGMT QARSSY+ +EILWG+RF
Sbjct: 107 IISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFT 166
Query: 286 TLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQL 323
+++ E G +EV+Y F+ TYE TP SA+ L +L
Sbjct: 167 PVLTL--EDGFYEVDYNSFHETYETSTPSLSAKELAEL 202
>pdb|3AUW|B Chain B, Cytoplasmic Domain Of Inward Rectifier Potassium Channel
Kir3.2 In Complex With Cadmium
pdb|3AUW|D Chain D, Cytoplasmic Domain Of Inward Rectifier Potassium Channel
Kir3.2 In Complex With Cadmium
Length = 182
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 98/158 (62%), Gaps = 7/158 (4%)
Query: 171 LCLQSIVGVMIQAFMV-GIVFAKLSRPKKRTQTLLF----SRINCLQTSVEDKIFFIWPT 225
LCL VG + + +V + AKL + K+ ++ + IN + +D++F + P
Sbjct: 21 LCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPL 80
Query: 226 TIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFE 285
I H+IN SP + +S A + +E EIVVILEG++E+TGMT QARSSY+ +EILWG+RF
Sbjct: 81 IISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFT 140
Query: 286 TLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQL 323
+++ E G +EV+Y F+ TYE TP SA+ L +L
Sbjct: 141 PVLTL--EDGFYEVDYNSFHETYETSTPSLSAKELAEL 176
>pdb|3K6N|A Chain A, Crystal Structure Of The S225e Mutant Kir3.1 Cytoplasmic
Pore Domain
Length = 207
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
Query: 217 DKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPN 276
D++F + P TI H I+ SP Y LS M E+FE+VVILEG++E+TGMT QAR+SY +
Sbjct: 96 DQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTED 155
Query: 277 EILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAI 326
E+LWGHRF ++S E G +V+Y F+ T+EV TP S + +++L +
Sbjct: 156 EVLWGHRFFPVISL--EEGFFKVDYSQFHATFEVPTPPYSVKEQEEMLLM 203
>pdb|1U4E|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Girk1 Channel
Length = 212
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
Query: 217 DKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPN 276
D++F + P TI H I+ SP Y LS M E+FE+VVILEG++E+TGMT QAR+SY +
Sbjct: 101 DQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTED 160
Query: 277 EILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAI 326
E+LWGHRF ++S E G +V+Y F+ T+EV TP S + +++L +
Sbjct: 161 EVLWGHRFFPVISL--EEGFFKVDYSQFHATFEVPTPPYSVKEQEEMLLM 208
>pdb|1N9P|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of G-protein
Activated Inward Rectifier Potassium Channel 1
Length = 207
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 71/108 (65%), Gaps = 2/108 (1%)
Query: 217 DKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPN 276
D++F + P TI H I+ SP Y LS E+FE+VVILEG++E+TG T QAR+SY +
Sbjct: 96 DQLFLVSPLTICHVIDAKSPFYDLSQRSXQTEQFEVVVILEGIVETTGXTCQARTSYTED 155
Query: 277 EILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLL 324
E+LWGHRF ++S E G +V+Y F+ T+EV TP S + ++ L
Sbjct: 156 EVLWGHRFFPVISL--EEGFFKVDYSQFHATFEVPTPPYSVKEQEEXL 201
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 115/288 (39%), Gaps = 74/288 (25%)
Query: 76 QDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTS 135
+D++ + W A F+++ +FA+++ L GD N S
Sbjct: 49 RDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQL-----GDAPIAN----------QS 93
Query: 136 IHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIF---ILCLQSIVGVMIQAFMVGIVFAK 192
F F FSVET T+GYG + P+ ++ I L+ VG+ A G+VFA+
Sbjct: 94 PPGFVGAFFFSVETLATVGYG-----DMHPQTVYAHAIATLEIFVGMSGIALSTGLVFAR 148
Query: 193 LSRPKKR--------------TQTLLFSRINCLQTSV----------------------- 215
+RP+ + TL+ N Q +
Sbjct: 149 FARPRAKIMFARHAIVRPFNGRMTLMVRAANARQNVIAEARAKMRLMRRRESSEGYSLMK 208
Query: 216 ---------EDKIFFI-WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGM 265
E IF + W ++H I+ SPL+ + + R ++V++EG E+T
Sbjct: 209 LHDLKLVRNEHPIFLLGW--NMMHVIDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQ 266
Query: 266 TTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTP 313
QAR ++ ++I W HR+ L+S G ++Y FN+T V P
Sbjct: 267 VMQARHAWEHDDIRWHHRYVDLMS--DVDGMTHIDYTRFNDTEPVEPP 312
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 115/288 (39%), Gaps = 74/288 (25%)
Query: 76 QDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTS 135
+D++ + W A F+++ +FA+++ L GD N S
Sbjct: 49 RDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQL-----GDAPIAN----------QS 93
Query: 136 IHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIF---ILCLQSIVGVMIQAFMVGIVFAK 192
F F FSVET T+GYG + P+ ++ I L+ VG+ A G+VFA+
Sbjct: 94 PPGFVGAFFFSVETLATVGYG-----DMHPQTVYAHAIATLEIFVGMSGIALSTGLVFAR 148
Query: 193 LSRPKKR--------------TQTLLFSRINCLQTSV----------------------- 215
+RP+ + TL+ N Q +
Sbjct: 149 FARPRAKIMFARHAIVRPFNGRMTLMVRAANARQNVIAEARAKMRLMRREHSSEGYSLMK 208
Query: 216 ---------EDKIFFI-WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGM 265
E IF + W ++H I+ SPL+ + + R ++V++EG E+T
Sbjct: 209 IHDLKLVRNEHPIFLLGW--NMMHVIDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQ 266
Query: 266 TTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTP 313
QAR ++ ++I W HR+ L+S G ++Y FN+T V P
Sbjct: 267 VMQARHAWEHDDIRWHHRYVDLMS--DVDGMTHIDYTRFNDTEPVEPP 312
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/293 (21%), Positives = 116/293 (39%), Gaps = 65/293 (22%)
Query: 58 GDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHG 117
G N+ + + KR +L D + L+ W + + +L++ +FA+ + G
Sbjct: 19 GSSNITRLGLEKRG--WLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLAC----G 72
Query: 118 DLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIV 177
D+ + NA P SFT F FSV+T TIGYG ++ P A ++ L+++
Sbjct: 73 DV----IENAR--PG-----SFTDAFFFSVQTMATIGYG--KLIPIGPLANTLVTLEALC 119
Query: 178 GVMIQAFMVGIVFAKLSRPKK--------------------------------------- 198
G++ A +++A+ +RP
Sbjct: 120 GMLGLAVAASLIYARFTRPTAGVLFSSRMVISDFEGKPTLMMRLANLRIEQIIEADVHLV 179
Query: 199 ------RTQTLLFSRINCLQTSVEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEI 252
+ ++F R + L + F T++H I+ SP+Y + + E
Sbjct: 180 LVRSEISQEGMVFRRFHDLTLTRSRSPIFSLSWTVMHPIDHHSPIYGETDETLRNSHSEF 239
Query: 253 VVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFN 305
+V+ G E+ AR +Y +EI+WG F + + + G ++ G F+
Sbjct: 240 LVLFTGHHEAFAQNVHARHAYSCDEIIWGGHFVDVFTTLPD-GRRAIDLGKFH 291
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 107/272 (39%), Gaps = 64/272 (23%)
Query: 58 GDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHG 117
G N+ + + KR +L D + L+ W + + +L++ +FA+ + G
Sbjct: 19 GSSNITRLGLEKRG--WLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLAC----G 72
Query: 118 DLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIV 177
D+ + NA P SFT F FSV+T TIGYG ++ P A ++ L+++
Sbjct: 73 DV----IENAR--PG-----SFTDAFFFSVQTMATIGYG--KLIPIGPLANTLVTLEALC 119
Query: 178 GVMIQAFMVGIVFAKLSRPKK--------------------------------------- 198
G++ A +++A+ +RP
Sbjct: 120 GMLGLAVAASLIYARFTRPTAGVLFSSRMVISDFEGKPTLMMRLANLRIEQIIEADVHLV 179
Query: 199 ------RTQTLLFSRINCLQTSVEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEI 252
+ ++F R + L + F T++H I+ SP+Y + + E
Sbjct: 180 LVRSEISQEGMVFRRFHDLTRTRSRSPIFSLSWTVMHPIDHHSPIYGETDETLRNSHSEF 239
Query: 253 VVILEGVIESTGMTTQARSSYLPNEILWGHRF 284
+V+ G E+ AR +Y +EI+WG F
Sbjct: 240 LVLFTGHHEAFAQNVHARHAYSCDEIIWGGHF 271
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 112/275 (40%), Gaps = 70/275 (25%)
Query: 58 GDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHG 117
G N+ + + KR +L D + L+ W + + +L++ +FA+ + G
Sbjct: 19 GSSNITRLGLEKRG--WLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLAC----G 72
Query: 118 DLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIV 177
D+ + NA P SFT F FSV+T TIGYG ++ P A ++ L+++
Sbjct: 73 DV----IENAR--PG-----SFTDAFFFSVQTMATIGYG--KLIPIGPLANTLVTLEALC 119
Query: 178 GVMIQAFMVGIVFAKLSRPKKRTQTLLFS---------------------RINCL----- 211
G++ A +++A+ +RP T +LFS RI +
Sbjct: 120 GMLGLAVAASLIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRLANLRIEAIIEADV 176
Query: 212 -------QTSVEDKIF---------------FIWPTTIVHKINPMSPLYTLSAADMLRER 249
+ S E +F F T++H I+ SP+Y + +
Sbjct: 177 HLVLVRSEVSQEGMVFRRFHDLTLTRSRSPIFSLSWTVMHPIDHHSPIYGETDETLRNSH 236
Query: 250 FEIVVILEGVIESTGMTTQARSSYLPNEILWGHRF 284
E +V+ G E+ AR +Y +EI+WG F
Sbjct: 237 SEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGGHF 271
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 107/272 (39%), Gaps = 64/272 (23%)
Query: 58 GDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHG 117
G N+ + + KR +L D + L+ W + + +L++ +FA+ + G
Sbjct: 19 GSSNITRLGLEKRG--WLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLAC----G 72
Query: 118 DLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIV 177
D+ + NA P SFT F FSV+T TIGYG ++ P A ++ L+++
Sbjct: 73 DV----IENAR--PG-----SFTDAFFFSVQTMATIGYG--KLIPIGPLANTLVTLEALC 119
Query: 178 GVMIQAFMVGIVFAKLSRPKK--------------------------------------- 198
G++ A +++A+ +RP
Sbjct: 120 GMLGLAVAASLIYARFTRPTAGVLFSSRMVISDFEGKPTLMMRLANLRIEQIIEADVHLV 179
Query: 199 ------RTQTLLFSRINCLQTSVEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEI 252
+ ++F R + L + F T++H I+ SP+Y + + E
Sbjct: 180 LVRSEISQEGMVFRRFHDLTLTRSRSPIFSLSWTVMHPIDHHSPIYGETDETLRNSHSEF 239
Query: 253 VVILEGVIESTGMTTQARSSYLPNEILWGHRF 284
+V+ G E+ AR +Y +EI+WG F
Sbjct: 240 LVLFTGHHEAFAQNVHARHAYSCDEIIWGGHF 271
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 107/272 (39%), Gaps = 64/272 (23%)
Query: 58 GDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHG 117
G N+ + + KR +L D + L+ W + + +L++ +FA+ + G
Sbjct: 19 GSSNITRLGLEKRG--WLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLAC----G 72
Query: 118 DLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIV 177
D+ + NA P SFT F FSV+T TIGYG ++ P A ++ L+++
Sbjct: 73 DV----IENAR--PG-----SFTDAFFFSVQTMATIGYG--KLIPIGPLANTLVTLEALC 119
Query: 178 GVMIQAFMVGIVFAKLSRPKK--------------------------------------- 198
G++ A +++A+ +RP
Sbjct: 120 GMLGLAVAASLIYARFTRPTAGVLFSSRMVISDFEGKPTLMMRLANLRIEAIIEADVHLV 179
Query: 199 ------RTQTLLFSRINCLQTSVEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEI 252
+ ++F R + L + F T++H I+ SP+Y + + E
Sbjct: 180 LVRSEISQEGMVFRRFHDLTLTRSRSPIFSLSWTVMHPIDHHSPIYGETDETLRNSHSEF 239
Query: 253 VVILEGVIESTGMTTQARSSYLPNEILWGHRF 284
+V+ G E+ AR +Y +EI+WG F
Sbjct: 240 LVLFTGHHEAFAQNVHARHAYSCDEIIWGGHF 271
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 107/272 (39%), Gaps = 64/272 (23%)
Query: 58 GDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHG 117
G N+ + + KR +L D + L+ W + + +L++ +FA+ + G
Sbjct: 19 GSSNITRLGLEKRG--WLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLAC----G 72
Query: 118 DLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIV 177
D+ + NA P SFT F FSV+T TIGYG ++ P A ++ L+++
Sbjct: 73 DV----IENAR--PG-----SFTDAFFFSVQTMATIGYG--KLIPIGPLANTLVTLEALC 119
Query: 178 GVMIQAFMVGIVFAKLSRPKK--------------------------------------- 198
G++ A +++A+ +RP
Sbjct: 120 GMLGLAVAARLIYARFTRPTAGVLFSSRMVISDFEGKPTLMMRLANLRIEQIIEADVHLV 179
Query: 199 ------RTQTLLFSRINCLQTSVEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEI 252
+ ++F R + L + F T++H I+ SP+Y + + E
Sbjct: 180 LVRSEISQEGMVFRRFHDLTLTRSRSPIFSLSWTVMHPIDHHSPIYGETDETLRNSHSEF 239
Query: 253 VVILEGVIESTGMTTQARSSYLPNEILWGHRF 284
+V+ G E+ AR +Y +EI+WG F
Sbjct: 240 LVLFTGHHEAFAQNVHARHAYSCDEIIWGGHF 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,479,579
Number of Sequences: 62578
Number of extensions: 372032
Number of successful extensions: 784
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 39
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)