Query psy4009
Match_columns 391
No_of_seqs 236 out of 774
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 23:02:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3827|consensus 100.0 1.2E-98 3E-103 743.6 26.3 275 48-324 23-349 (400)
2 PF01007 IRK: Inward rectifier 100.0 6E-85 1.3E-89 649.6 25.6 270 54-326 1-322 (336)
3 KOG3713|consensus 99.3 9.8E-12 2.1E-16 128.3 9.6 105 75-198 331-435 (477)
4 PF07885 Ion_trans_2: Ion chan 99.2 1.3E-10 2.9E-15 92.4 8.1 58 136-195 22-79 (79)
5 KOG1545|consensus 99.1 2E-11 4.3E-16 122.2 -0.6 107 74-199 346-452 (507)
6 KOG4390|consensus 98.7 3.6E-09 7.8E-14 107.0 0.3 104 74-196 309-412 (632)
7 PLN03192 Voltage-dependent pot 98.6 1.1E-07 2.4E-12 105.3 9.6 90 101-198 212-308 (823)
8 PRK10537 voltage-gated potassi 98.6 2.4E-07 5.2E-12 95.1 10.4 54 135-190 165-218 (393)
9 KOG0498|consensus 98.4 1.1E-06 2.4E-11 96.0 9.5 113 81-201 225-355 (727)
10 KOG1419|consensus 98.3 8.5E-07 1.8E-11 93.2 7.2 59 134-194 265-323 (654)
11 KOG1418|consensus 97.6 3.7E-05 8.1E-10 76.3 3.7 51 136-188 113-163 (433)
12 KOG3684|consensus 97.2 0.00058 1.3E-08 71.0 5.6 57 136-194 285-341 (489)
13 KOG1420|consensus 97.0 0.0021 4.5E-08 68.7 7.6 92 91-194 250-342 (1103)
14 KOG0501|consensus 96.8 0.005 1.1E-07 66.0 9.2 63 137-201 422-487 (971)
15 KOG4404|consensus 96.7 0.0011 2.4E-08 66.5 2.8 47 138-186 80-126 (350)
16 PF00520 Ion_trans: Ion transp 96.7 0.013 2.8E-07 51.6 9.3 56 134-189 141-200 (200)
17 KOG0500|consensus 96.5 0.0051 1.1E-07 64.7 6.8 107 87-198 128-240 (536)
18 KOG4404|consensus 96.5 0.0077 1.7E-07 60.5 7.3 60 137-196 185-250 (350)
19 KOG1418|consensus 96.4 0.0019 4E-08 64.2 2.2 48 137-186 241-296 (433)
20 KOG0499|consensus 94.2 0.1 2.3E-06 56.4 6.7 56 136-194 401-456 (815)
21 KOG3193|consensus 94.1 0.15 3.2E-06 54.8 7.5 26 137-162 216-241 (1087)
22 PF07077 DUF1345: Protein of u 93.7 0.32 7E-06 45.2 8.1 52 135-188 129-180 (180)
23 TIGR00934 2a38euk potassium up 63.1 20 0.00043 40.7 7.0 95 89-190 449-547 (800)
24 PF00060 Lig_chan: Ligand-gate 55.3 10 0.00022 32.4 2.6 61 136-199 42-102 (148)
25 KOG3676|consensus 39.4 1.3E+02 0.0029 34.2 8.5 102 92-197 544-654 (782)
26 TIGR00933 2a38 potassium uptak 35.8 1.6E+02 0.0034 30.3 8.1 61 136-196 229-300 (390)
27 TIGR00870 trp transient-recept 31.5 3.3E+02 0.0071 30.2 10.2 108 91-199 508-621 (743)
28 KOG1341|consensus 29.7 1.6E+02 0.0034 33.1 7.1 112 88-210 460-596 (854)
29 KOG3927|consensus 29.3 69 0.0015 32.4 4.1 28 86-113 43-70 (300)
30 PF07271 Cytadhesin_P30: Cytad 28.8 60 0.0013 32.4 3.5 38 152-192 55-92 (279)
31 TIGR00933 2a38 potassium uptak 28.2 95 0.0021 31.9 5.0 51 137-187 127-181 (390)
32 COG4291 Predicted membrane pro 27.1 3.9E+02 0.0084 26.0 8.4 51 138-190 170-220 (228)
33 PF12273 RCR: Chitin synthesis 26.7 50 0.0011 28.7 2.3 6 89-94 2-7 (130)
34 COG3771 Predicted membrane pro 24.2 88 0.0019 26.4 3.1 21 92-112 47-67 (97)
35 KOG3599|consensus 23.4 3.4E+02 0.0074 31.2 8.6 28 83-111 585-612 (798)
36 COG3105 Uncharacterized protei 20.3 1.5E+02 0.0032 26.7 4.0 22 179-200 14-35 (138)
37 PF11623 DUF3252: Protein of u 20.3 66 0.0014 24.5 1.5 38 221-258 1-38 (53)
38 TIGR03802 Asp_Ala_antiprt aspa 20.1 2.6E+02 0.0057 30.5 6.7 22 226-247 219-240 (562)
No 1
>KOG3827|consensus
Probab=100.00 E-value=1.2e-98 Score=743.63 Aligned_cols=275 Identities=61% Similarity=1.099 Sum_probs=265.3
Q ss_pred cccCceEeeCCceeEEecCchhhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCC
Q psy4009 48 RIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNA 127 (391)
Q Consensus 48 ~~~~Rlv~K~G~~NV~~~~~~~~~~ryl~DlfttLv~~~Wr~~llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~~~ 127 (391)
|.|+|+|.|||+|||.++|+++++.||++|+|||++|++|||.+++|+++|+++|++||++||+||+.||||+..+ ++.
T Consensus 23 r~r~R~v~K~G~cNV~~~nv~~~~~rYl~DifTTlVD~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~-~~~ 101 (400)
T KOG3827|consen 23 RKRRRFVKKDGHCNVQFKNVPRKRLRYLQDIFTTLVDLKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDP-PGE 101 (400)
T ss_pred hhhhhhcccCCceeEEEcCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCC-CCc
Confidence 6799999999999999999988899999999999999999999999999999999999999999999999998654 467
Q ss_pred CCCCcccCCCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccceeeecc
Q psy4009 128 TWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSR 207 (391)
Q Consensus 128 ~~~pCv~~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~Ra~TI~FS~ 207 (391)
+|+||+.++++|++||+||+|||||||||.|+++++||.|++++++|+|+|++++|||+|++|||++||||||+||+||+
T Consensus 102 ~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKRAeTl~FS~ 181 (400)
T KOG3827|consen 102 NHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKRAETLIFSD 181 (400)
T ss_pred CCCcceeeccchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhheeeecc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------ceeEee-------------------------------------------ccCcceeeccCeeEEeecCCCC
Q psy4009 208 ---------INCLQT-------------------------------------------SVEDKIFFIWPTTIVHKINPMS 235 (391)
Q Consensus 208 ---------~lcLmf-------------------------------------------~~~~~~fl~~p~tv~H~IDe~S 235 (391)
|+|||| .|.|++||+||+||+|+|||+|
T Consensus 182 ~AVI~~RDGkLCLmfRVgdlRkShliea~Vraqlik~~~T~EGE~ipl~q~di~vg~d~g~d~~Flv~Plti~H~IDe~S 261 (400)
T KOG3827|consen 182 HAVIALRDGKLCLMFRVGDLRKSHLIEAHVRAQLIKTRVTKEGEVIPLHQTDIDVGFDTGSDRLFLVWPLTIYHVIDETS 261 (400)
T ss_pred ceEEEeeCCceEEEEEecCccccceeeEEEEEEEEEEcccCCcceeecceEEeecccCCCcCceEEEeceEEEEEcCCCC
Confidence 899999 4457999999999999999999
Q ss_pred CCCCCCHhhhccCCEEEEEEEEEeeccccceEEEEEeecCCceecCCeeccceeeecCCCeEEEecCCCCceeeecCCCC
Q psy4009 236 PLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLC 315 (391)
Q Consensus 236 PLy~~t~~~L~~~~~EivV~l~G~destg~tvqaR~SY~~~EI~wg~rF~~~i~~~~~~g~~~VD~~~F~~t~~v~~P~c 315 (391)
|||++++++|.++||||||+|+|++|+||+|+|||+||+|+||+|||||+|+++++ ++|+|.|||++||+|++|+||.|
T Consensus 262 PLy~l~~~~l~~~~FEiVViLeG~VEsTg~t~QaRTSYlp~EILWGhRF~pvv~~~-~~g~Y~VDy~~F~~T~~V~tP~c 340 (400)
T KOG3827|consen 262 PLYDLSRQDLAKADFEIVVILEGTVEATGMTTQARTSYLPSEILWGHRFVPVVTLE-KNGKYEVDYSNFHKTYEVPTPLC 340 (400)
T ss_pred chhhhChhhhhhcceEEEEEEEeEEecccceeecccccchHHhhhccccceeeEec-cCCcEEEEhHHcCceeeccCCCc
Confidence 99999999999999999999999999999999999999999999999999999975 79999999999999999999999
Q ss_pred CHHhHHHHh
Q psy4009 316 SAQALDQLL 324 (391)
Q Consensus 316 sa~~l~~~~ 324 (391)
||++++|.+
T Consensus 341 sa~~l~E~~ 349 (400)
T KOG3827|consen 341 SAKELDELK 349 (400)
T ss_pred Chhhhhhhh
Confidence 999999833
No 2
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=100.00 E-value=6e-85 Score=649.58 Aligned_cols=270 Identities=55% Similarity=0.985 Sum_probs=238.1
Q ss_pred EeeCCceeEEecCchhhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCcc
Q psy4009 54 VFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCV 133 (391)
Q Consensus 54 v~K~G~~NV~~~~~~~~~~ryl~DlfttLv~~~Wr~~llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~~~~~~pCv 133 (391)
|+|||+|||++.+++.++.+|++|+|||+++++|++++++|+++|+++|++||++||+++..|||+...+ ++.+++||+
T Consensus 1 v~K~G~~Nv~~~~~~~~~~~~~~D~~~tlv~~~W~~~l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~-~~~~~~~Cv 79 (336)
T PF01007_consen 1 VSKDGRCNVRRSNVPQKWFRYLRDLYTTLVDMSWRWFLLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIH-ADSNWTPCV 79 (336)
T ss_dssp B-TTS-BSEEEESSTSCCHCCCHTHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTT-SBTTS-TSE
T ss_pred CCCCceeEEEEcCCChhhhhHHHHHHhhccCCCeeeeeehhHHHHHHHHHHHHHHHHHHhhhcccchhcc-cccCCCCce
Confidence 6899999999999987899999999999999999999999999999999999999999999999987533 345789999
Q ss_pred cCCCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccceeeecc------
Q psy4009 134 TSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSR------ 207 (391)
Q Consensus 134 ~~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~Ra~TI~FS~------ 207 (391)
.++.+|.+||+||+|||||||||.++|+++||+|++++++|+++|++++|+++|++|||||||++|++||+||+
T Consensus 80 ~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~R~~tI~FS~~AVI~~ 159 (336)
T PF01007_consen 80 SNVNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKKRASTILFSKKAVIAP 159 (336)
T ss_dssp CT-TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCGGGSEEE-SSEEEEE
T ss_pred ecccchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccceEEEEeeeEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---ceeEee--------------------------c-----------------cCcceeeccCeeEEeecCCCCCCCCCC
Q psy4009 208 ---INCLQT--------------------------S-----------------VEDKIFFIWPTTIVHKINPMSPLYTLS 241 (391)
Q Consensus 208 ---~lcLmf--------------------------~-----------------~~~~~fl~~p~tv~H~IDe~SPLy~~t 241 (391)
++|||| + +.++++|.+||||+|+|||+||||+++
T Consensus 160 ~dG~~~LmfRv~n~R~~~liea~Vr~~l~~~~~t~eGe~~~~~~~~L~l~~~~~~~~~~L~~p~tV~H~IDe~SPLy~~t 239 (336)
T PF01007_consen 160 RDGKLCLMFRVANLRKNQLIEAHVRLYLIRDRVTKEGERIRLRQQDLPLERDQGEDRPFLILPWTVVHVIDEDSPLYGLT 239 (336)
T ss_dssp ETTEEEEEEEEEESSSSSEEEEEEEEEEEEEEE-TTS-EEEEEEEEEGSSTTTTTTBEEESSEEEEEEE-STTSTTTT--
T ss_pred cCCeeEEEEEecCCCcCeeecceEEEEEEEeeecCCCceEEeeccccccccCCCCCceeeeCCEEEEEeCCCCCcchhhc
Confidence 799999 1 124579999999999999999999999
Q ss_pred HhhhccCCEEEEEEEEEeeccccceEEEEEeecCCceecCCeeccceeeecCCCeEEEecCCCCceeeecCCCCCHHhHH
Q psy4009 242 AADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALD 321 (391)
Q Consensus 242 ~~~L~~~~~EivV~l~G~destg~tvqaR~SY~~~EI~wg~rF~~~i~~~~~~g~~~VD~~~F~~t~~v~~P~csa~~l~ 321 (391)
+++|+++++||+|+++|+||+|||++|||+||.++||+|||||+||++. ++|+|.|||++||+|+|+++|.|||+|++
T Consensus 240 ~~~L~~~~~EivV~l~G~de~t~~~v~aR~SY~~~eI~wg~rF~~~v~~--~~g~~~VD~s~F~~t~pv~~p~~Sa~~~~ 317 (336)
T PF01007_consen 240 PEDLAQADFEIVVTLEGIDESTGQTVQARTSYLPEEILWGHRFVPMVSR--EDGRYRVDFSKFHDTVPVDTPSCSAKELD 317 (336)
T ss_dssp HHHHHCTTEEEEEEEEEEETTTTEEEEEEEEEEGGGEEETEEE--SEEE--ETTEEEEEGCGTT-EEE-TS-SS-HHHHH
T ss_pred cchhccCcEEEEEEEEEEEeecceEEEEEEEEchHHeecCCEeeeeEEe--cCCeEEEEhHHhCCceEccCCCcCHHHHH
Confidence 9999999999999999999999999999999999999999999999995 79999999999999999999999999999
Q ss_pred HHhhh
Q psy4009 322 QLLAI 326 (391)
Q Consensus 322 ~~~~~ 326 (391)
+.++.
T Consensus 318 ~~~~~ 322 (336)
T PF01007_consen 318 EKKQQ 322 (336)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 99864
No 3
>KOG3713|consensus
Probab=99.28 E-value=9.8e-12 Score=128.30 Aligned_cols=105 Identities=20% Similarity=0.301 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCcccCCCchhhhhheeeecccccc
Q psy4009 75 LQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIG 154 (391)
Q Consensus 75 l~DlfttLv~~~Wr~~llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~~~~~~pCv~~~~sF~~AF~FSveT~TTIG 154 (391)
|+-+-+|+ +-+.+.+.++.+.. .+..++|+.+-|.+. +.. ++ ..+.|+..+|||+++||||||
T Consensus 331 Lr~lg~Tl-r~S~~ElglLllfL-~~GI~iFStlvY~~E--k~~------~~-------~~FtSIPa~~WWaiVTMTTVG 393 (477)
T KOG3713|consen 331 LRTLGLTL-RRSYRELGLLLLFL-AVGIVIFSTLVYFAE--KDE------PD-------TKFTSIPAGFWWAVVTMTTVG 393 (477)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHhh--hcC------CC-------CCCccccchhheeeEEEeeec
Confidence 45555665 33344443332222 345567776444432 211 01 248999999999999999999
Q ss_pred CCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Q psy4009 155 YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKK 198 (391)
Q Consensus 155 YGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~ 198 (391)
|||++|.+ ..|.++++..++.|+++.|+.+.+|+.+|++-.+
T Consensus 394 YGDm~P~T--~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~ 435 (477)
T KOG3713|consen 394 YGDMVPVT--VLGKLVASLCILCGVLVLALPITIIVNNFSMYYS 435 (477)
T ss_pred ccCccccc--cchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHH
Confidence 99999997 5899999999999999999999999999996543
No 4
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.15 E-value=1.3e-10 Score=92.38 Aligned_cols=58 Identities=22% Similarity=0.442 Sum_probs=49.9
Q ss_pred CCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy4009 136 IHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSR 195 (391)
Q Consensus 136 ~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SR 195 (391)
..++.+|+|||+.|+|||||||..|.+ +.+++++.+++++|+.+.++.++.+...+.+
T Consensus 22 ~~~~~da~yfs~~t~tTvGyGDi~p~t--~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~~ 79 (79)
T PF07885_consen 22 KWSFIDALYFSFVTITTVGYGDIVPQT--PAGRIFTIIYMLIGIFLFALFLSVLASVLTQ 79 (79)
T ss_dssp TTSHHHHHHHHHHHHTT---SSSSTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cCCHHHHHHHHHHHHhcccCCCccCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999985 6889999999999999999999998887753
No 5
>KOG1545|consensus
Probab=99.06 E-value=2e-11 Score=122.16 Aligned_cols=107 Identities=23% Similarity=0.265 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCcccCCCchhhhhheeeeccccc
Q psy4009 74 YLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTI 153 (391)
Q Consensus 74 yl~DlfttLv~~~Wr~~llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~~~~~~pCv~~~~sF~~AF~FSveT~TTI 153 (391)
.++-+-.|| +.+.|.+-++++..|+...++-..+|++-+ ++ ++ ..+.+..+||||+|+|||||
T Consensus 346 GLQILGqTl-~aSmrElgLLIFFlfIgviLFsSavYFAEa---de------~~-------S~F~SIPdaFWwavVTMTTV 408 (507)
T KOG1545|consen 346 GLQILGQTL-RASMRELGLLIFFLFIGVILFSSAVYFAEA---DE------PE-------SHFSSIPDAFWWAVVTMTTV 408 (507)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhceeeeeec---CC------Cc-------cCCCcCcccceEEEEEEEee
Confidence 355555555 677777766666666665554344555421 11 11 36889999999999999999
Q ss_pred cCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q psy4009 154 GYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 199 (391)
Q Consensus 154 GYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~R 199 (391)
|||||+|.+ +.|.++..+++|.|++..|+.+-++.+.|..-.+|
T Consensus 409 GYGDm~P~T--vgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhr 452 (507)
T KOG1545|consen 409 GYGDMVPVT--VGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 452 (507)
T ss_pred ccccceecc--cCceehhhHHhhhhheEecccccEEEecccceeec
Confidence 999999997 68999999999999999999999988887654444
No 6
>KOG4390|consensus
Probab=98.68 E-value=3.6e-09 Score=107.00 Aligned_cols=104 Identities=24% Similarity=0.383 Sum_probs=77.8
Q ss_pred hHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCcccCCCchhhhhheeeeccccc
Q psy4009 74 YLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTI 153 (391)
Q Consensus 74 yl~DlfttLv~~~Wr~~llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~~~~~~pCv~~~~sF~~AF~FSveT~TTI 153 (391)
.++-+-.||-..--..-+++|.+.. ..++||.+.+.. +.|. -...+.++..||||.++|+||+
T Consensus 309 GLRILGYTLKSCASELGFLlFSLtM--AIIIFATvMfYA--EKg~-------------~at~FTsIPaaFWYTIVTmTTL 371 (632)
T KOG4390|consen 309 GLRILGYTLKSCASELGFLLFSLTM--AIIIFATVMFYA--EKGS-------------SATKFTSIPAAFWYTIVTMTTL 371 (632)
T ss_pred ccchhhhhHHHHHHHHhHHHHHHHH--HHHHHHHHHHhh--hccc-------------cccccccCcHhHhhheeeeeec
Confidence 3455556665544444555666543 446788755442 2221 0136889999999999999999
Q ss_pred cCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q psy4009 154 GYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRP 196 (391)
Q Consensus 154 GYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP 196 (391)
|||||.|.+ ..|.++..+.++.|+++.|+.+-++...|||-
T Consensus 372 GYGDMVp~T--IaGKIfGsiCSLSGVLVIALPVPvIVSNFSRI 412 (632)
T KOG4390|consen 372 GYGDMVPST--IAGKIFGSICSLSGVLVIALPVPVIVSNFSRI 412 (632)
T ss_pred cccccchHH--HHHHHhhhhhcccceEEEeccccEEEechhHH
Confidence 999999987 57899999999999999999999998888865
No 7
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.61 E-value=1.1e-07 Score=105.29 Aligned_cols=90 Identities=16% Similarity=0.300 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhcCCcccccCCCCCCCCcc-c------CCCchhhhhheeeeccccccCCcccccCCchhHHHHHHH
Q psy4009 101 SWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCV-T------SIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCL 173 (391)
Q Consensus 101 ~~llFA~ly~li~~~~gdl~~~~~~~~~~~pCv-~------~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~i 173 (391)
..-++|++||+++....+ .+.+|-..+ . ....+..|||||+.|+|||||||++|.+ +...+++++
T Consensus 212 ~~H~~aC~~y~i~~~~~~------~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t--~~E~i~~i~ 283 (823)
T PLN03192 212 LVHCAGCLYYLIADRYPH------QGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVN--TIEMIFIIF 283 (823)
T ss_pred HHHHHHHHHHHHHhhcCC------CCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCc--cchHHHHHH
Confidence 445579999998742211 111232110 0 1224677999999999999999999986 578999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccc
Q psy4009 174 QSIVGVMIQAFMVGIVFAKLSRPKK 198 (391)
Q Consensus 174 q~l~Glll~A~~~GivfaK~SRP~~ 198 (391)
-+++|+++.|+++|.+..-+....+
T Consensus 284 ~ml~g~~~~a~~ig~i~~li~~~~~ 308 (823)
T PLN03192 284 YMLFNLGLTAYLIGNMTNLVVEGTR 308 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988776655443
No 8
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.59 E-value=2.4e-07 Score=95.12 Aligned_cols=54 Identities=28% Similarity=0.459 Sum_probs=46.9
Q ss_pred CCCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4009 135 SIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVF 190 (391)
Q Consensus 135 ~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~Givf 190 (391)
...++.+||||+++|+||+||||+.|.+ +.|++++++-++.|+.+.+..++.+.
T Consensus 165 ~~~s~~dA~y~svvt~tTvGyGdi~p~t--~~grl~~i~~ii~Gi~vf~~~is~i~ 218 (393)
T PRK10537 165 PIESLSTAFYFSIVTMSTVGYGDIVPVS--ESARLFTISVIILGITVFATSISAIF 218 (393)
T ss_pred CCCCHHHHHHhhheeeecccCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999986 57889999999999998887776544
No 9
>KOG0498|consensus
Probab=98.38 E-value=1.1e-06 Score=95.95 Aligned_cols=113 Identities=19% Similarity=0.422 Sum_probs=76.9
Q ss_pred HHHhcchhhH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCC-CCCC-------cccC---C------Cchhhh
Q psy4009 81 TLVDAQWRWT-LLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNA-TWTP-------CVTS---I------HSFTSC 142 (391)
Q Consensus 81 tLv~~~Wr~~-llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~~~-~~~p-------Cv~~---~------~sF~~A 142 (391)
...+..|-++ +++++.+++..| +|++||+++...-+- . ... +|.. |-.. + ..|..|
T Consensus 225 ~v~~~awa~~a~ll~~~~l~sH~--~gc~wYlia~~~~~~---~-~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~a 298 (727)
T KOG0498|consen 225 FVYETAWAGAALLLSVYLLASHW--AGCIWYLIAIERPAS---C-PRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYA 298 (727)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHhccccc---C-ccccccccccccccccCcccccccchhHHHHHHHH
Confidence 3345567665 344444444444 499999998653210 0 011 3443 2220 1 146899
Q ss_pred hheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Q psy4009 143 FLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQ 201 (391)
Q Consensus 143 F~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~Ra~ 201 (391)
+||++.|+||+|||+.++++. .=.+++++-+++|+++.|.++|.+-+-+.+-..|.+
T Consensus 299 Lyw~l~tLstvG~g~~~s~~~--~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~ 355 (727)
T KOG0498|consen 299 LYWGLSTLSTVGYGLVHANNM--GEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTE 355 (727)
T ss_pred HHHHhhHhhhccCCccCCCCc--HHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHH
Confidence 999999999999999998863 446788888999999999999999888887766533
No 10
>KOG1419|consensus
Probab=98.34 E-value=8.5e-07 Score=93.22 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=53.2
Q ss_pred cCCCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4009 134 TSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLS 194 (391)
Q Consensus 134 ~~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~S 194 (391)
..+.++.+|+||.+.|+|||||||.+|.+ +.|+++++.-+++|+-.+|+..|++-.-|+
T Consensus 265 ~~F~TyADALWWG~ITltTIGYGDk~P~T--WlGr~laa~fsligiSFFALPAGILGSGfA 323 (654)
T KOG1419|consen 265 DEFPTYADALWWGVITLTTIGYGDKTPQT--WLGRLLAACFSLIGISFFALPAGILGSGFA 323 (654)
T ss_pred ccchhHHHHHHhhheeEEeeccCCcCccc--chhHHHHHHHHHHHHHHHhcccccccchhh
Confidence 35889999999999999999999999987 799999999999999999999998754443
No 11
>KOG1418|consensus
Probab=97.64 E-value=3.7e-05 Score=76.31 Aligned_cols=51 Identities=27% Similarity=0.445 Sum_probs=44.5
Q ss_pred CCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4009 136 IHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGI 188 (391)
Q Consensus 136 ~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~Gi 188 (391)
.-+|.+|+|||..+.||||||+++|.+ ..|+++.++=+++|+=+..++++-
T Consensus 113 ~W~f~~al~fs~tv~TTIGYG~i~P~T--~~Gr~~~i~YaliGIPl~li~l~~ 163 (433)
T KOG1418|consen 113 QWSFSSALLFSITVITTIGYGNIAPRT--DAGRLFTILYALVGIPLMLLILAD 163 (433)
T ss_pred ceecchhHhhhhheeeeccCCcccCCc--CcchhHHHHHHHHhhHHHHHHHHH
Confidence 458999999999999999999999976 478999999999999777666553
No 12
>KOG3684|consensus
Probab=97.15 E-value=0.00058 Score=71.01 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=48.4
Q ss_pred CCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4009 136 IHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLS 194 (391)
Q Consensus 136 ~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~S 194 (391)
-.++.++.|+-..|+-+|||||++|.+-| |+.++.+-.++|....|+++.+|--|+.
T Consensus 285 ~~~~~nsmWli~iTFlsiGYGDiVP~Tyc--Gr~v~l~tGivGa~~sallvAvisRKLe 341 (489)
T KOG3684|consen 285 TINYLNSMWLIAITFLSIGYGDIVPNTYC--GRGVALLTGIVGAGCSSLLVAVIARKLE 341 (489)
T ss_pred HHHHHhhHHHHHHHHhhcccCcccCCccc--cchHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 45799999999999999999999999988 8888888888888887777777665543
No 13
>KOG1420|consensus
Probab=96.96 E-value=0.0021 Score=68.73 Aligned_cols=92 Identities=21% Similarity=0.300 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cccCCCCCCCCcccCCCchhhhhheeeeccccccCCcccccCCchhHHH
Q psy4009 91 LLVFALNFLLSWLMFAIVWWLIVYTHGDLD-KVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIF 169 (391)
Q Consensus 91 llif~~~yl~~~llFA~ly~li~~~~gdl~-~~~~~~~~~~pCv~~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~ 169 (391)
+.-.+..|+..|+--|.+.-++. ..||.- +.+ + ..--+++++.||-++|++||||||+|-.+. .|++
T Consensus 250 l~qlvsifisvwltaag~ihlle-nsgdp~~~f~--n-------~hrltyw~cvyfl~vtmstvgygdvyc~t~--lgrl 317 (1103)
T KOG1420|consen 250 LVQLVSIFISVWLTAAGFIHLLE-NSGDPWENFQ--N-------NHRLTYWECVYFLMVTMSTVGYGDVYCKTT--LGRL 317 (1103)
T ss_pred HHHHHHHHHHHHHhhcceeehhh-cCCChhHhcc--C-------cccchhhheeeeeEEEeeeccccceeehhh--hhHH
Confidence 44445566777777555443332 234421 111 0 124578999999999999999999998764 5999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4009 170 ILCLQSIVGVMIQAFMVGIVFAKLS 194 (391)
Q Consensus 170 l~~iq~l~Glll~A~~~GivfaK~S 194 (391)
.+.+-.+.|+.++|--+.-+.--+-
T Consensus 318 fmvffil~glamfasyvpeiielig 342 (1103)
T KOG1420|consen 318 FMVFFILGGLAMFASYVPEIIELIG 342 (1103)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHc
Confidence 9999999999999877776655544
No 14
>KOG0501|consensus
Probab=96.84 E-value=0.005 Score=66.04 Aligned_cols=63 Identities=17% Similarity=0.381 Sum_probs=47.6
Q ss_pred CchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCcccccc
Q psy4009 137 HSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIV---FAKLSRPKKRTQ 201 (391)
Q Consensus 137 ~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~Giv---faK~SRP~~Ra~ 201 (391)
.-+.+++||....+||||||.+.|+++ .-.++.+..+++|.++-|.+.|-+ |..|.....|.+
T Consensus 422 S~YissLYfTMt~mttvGFGNiA~~TD--~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYH 487 (971)
T KOG0501|consen 422 SAYISSLYFTMTCMTTVGFGNIAPNTD--NEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYH 487 (971)
T ss_pred ceehhhhhhhhhhhhcccccccCCCcc--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHH
Confidence 357899999999999999999999986 345666666788888888888864 444444444443
No 15
>KOG4404|consensus
Probab=96.67 E-value=0.0011 Score=66.48 Aligned_cols=47 Identities=23% Similarity=0.465 Sum_probs=40.0
Q ss_pred chhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHH
Q psy4009 138 SFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMV 186 (391)
Q Consensus 138 sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~ 186 (391)
.|..||||+....||||||.-.|.++ .|+++.++-+++|+-+--++-
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~--~GK~Fcm~Yal~Gipl~lvmF 126 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTD--GGKAFCMFYALVGIPLTLVMF 126 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCc--CceehhhhHHHhcCchHHHHH
Confidence 68999999999999999999999986 689888888888875544443
No 16
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=96.66 E-value=0.013 Score=51.56 Aligned_cols=56 Identities=14% Similarity=0.341 Sum_probs=45.6
Q ss_pred cCCCchhhhhheeeeccccccCCccccc---CCchhHHHHH-HHHHHHHHHHHHHHHHHH
Q psy4009 134 TSIHSFTSCFLFSVETQHTIGYGAKQVT---EECPEAIFIL-CLQSIVGVMIQAFMVGIV 189 (391)
Q Consensus 134 ~~~~sF~~AF~FSveT~TTIGYGd~~Pt---~~Cp~g~~l~-~iq~l~Glll~A~~~Giv 189 (391)
.+.++|..++|+..++.||.|||+..+. +.-+.+.+.. ++..+.++++.++++|++
T Consensus 141 ~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 141 ENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 4678999999999999999999998875 2224555444 888889999999999875
No 17
>KOG0500|consensus
Probab=96.55 E-value=0.0051 Score=64.73 Aligned_cols=107 Identities=21% Similarity=0.326 Sum_probs=68.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----cccccCCCCCCCCcccC--CCchhhhhheeeeccccccCCcccc
Q psy4009 87 WRWTLLVFALNFLLSWLMFAIVWWLIVYTHGD----LDKVNLGNATWTPCVTS--IHSFTSCFLFSVETQHTIGYGAKQV 160 (391)
Q Consensus 87 Wr~~llif~~~yl~~~llFA~ly~li~~~~gd----l~~~~~~~~~~~pCv~~--~~sF~~AF~FSveT~TTIGYGd~~P 160 (391)
||...++..++.++.|- |++|++|+...|- ..-.+-.+.....|..+ ...+.-.||||.=|+|||| +. |
T Consensus 128 fri~~lv~~~~ilfHWN--aClYf~iS~~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG--e~-P 202 (536)
T KOG0500|consen 128 FRISKLVHYCLILFHWN--ACLYFLISKAIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG--EQ-P 202 (536)
T ss_pred HHHHHHHHHHHHHHHHh--hHHHHhhhHhcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc--CC-C
Confidence 44444555555556664 8999999865441 11000011223345542 2356789999999999998 32 3
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Q psy4009 161 TEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKK 198 (391)
Q Consensus 161 t~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~ 198 (391)
.+..-.-.++.++..++|++++|.++|-|-.-++.-.+
T Consensus 203 ~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna 240 (536)
T KOG0500|consen 203 PPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNA 240 (536)
T ss_pred CCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhH
Confidence 33223457899999999999999999977666665443
No 18
>KOG4404|consensus
Probab=96.48 E-value=0.0077 Score=60.54 Aligned_cols=60 Identities=15% Similarity=0.335 Sum_probs=44.2
Q ss_pred CchhhhhheeeeccccccCCcccccCC------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q psy4009 137 HSFTSCFLFSVETQHTIGYGAKQVTEE------CPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRP 196 (391)
Q Consensus 137 ~sF~~AF~FSveT~TTIGYGd~~Pt~~------Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP 196 (391)
=+|.+|+||...|+||||+||.++..+ =|.=.+...+=+++|+-+++...-++.-+|-.-
T Consensus 185 Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~ 250 (350)
T KOG4404|consen 185 WSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTM 250 (350)
T ss_pred cchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999876532 122236666677788888877777776666543
No 19
>KOG1418|consensus
Probab=96.35 E-value=0.0019 Score=64.23 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=39.0
Q ss_pred CchhhhhheeeeccccccCCcccccCCchhHH--------HHHHHHHHHHHHHHHHHH
Q psy4009 137 HSFTSCFLFSVETQHTIGYGAKQVTEECPEAI--------FILCLQSIVGVMIQAFMV 186 (391)
Q Consensus 137 ~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~--------~l~~iq~l~Glll~A~~~ 186 (391)
-+|.+||||++.|+|||||||..|.+. .+. ..+.+..++|+.+.+...
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTL--LGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCC--cceeeccccccchhHHHHHhhhhHHHHHh
Confidence 578999999999999999999999873 322 567777788888777665
No 20
>KOG0499|consensus
Probab=94.23 E-value=0.1 Score=56.39 Aligned_cols=56 Identities=23% Similarity=0.430 Sum_probs=44.9
Q ss_pred CCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4009 136 IHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLS 194 (391)
Q Consensus 136 ~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~S 194 (391)
.+.++.||||++.|.+||| |...|.+ ..-++...+.-+.|++++|+++|=+---++
T Consensus 401 Gn~YiRCyyfa~kt~~tiG-~~P~P~~--~~E~Vf~~~~w~mGVFvFslliGQmRDvi~ 456 (815)
T KOG0499|consen 401 GNEYIRCYYFAVKTLITIG-GLPEPQT--LFEIVFQLLNWFMGVFVFSLLIGQMRDVIG 456 (815)
T ss_pred CCceeeehhhHHHHHHHhc-CCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5679999999999999998 5556654 355777888888999999999997554444
No 21
>KOG3193|consensus
Probab=94.14 E-value=0.15 Score=54.82 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.5
Q ss_pred CchhhhhheeeeccccccCCcccccC
Q psy4009 137 HSFTSCFLFSVETQHTIGYGAKQVTE 162 (391)
Q Consensus 137 ~sF~~AF~FSveT~TTIGYGd~~Pt~ 162 (391)
-+....|||-++|++||||||-+|.-
T Consensus 216 i~lf~s~y~v~vtfstvgygd~~pd~ 241 (1087)
T KOG3193|consen 216 IDLFTSFYFVMVTFSTVGYGDWYPDY 241 (1087)
T ss_pred eeeeeeEEEEEEEEeecccccccccc
Confidence 35677899999999999999999863
No 22
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=93.66 E-value=0.32 Score=45.25 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=45.9
Q ss_pred CCCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4009 135 SIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGI 188 (391)
Q Consensus 135 ~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~Gi 188 (391)
...+|.|.+|||...-||-.=-|..+++ ...+-++..|++++.+.+++++++
T Consensus 129 ~~P~y~DFlYfsftiG~t~q~SDv~v~s--~~~Rr~vl~hsllSF~Fnt~ilAl 180 (180)
T PF07077_consen 129 WEPDYWDFLYFSFTIGMTFQTSDVNVTS--RRMRRLVLLHSLLSFFFNTVILAL 180 (180)
T ss_pred CCCCchhhhHHHHHHHhhccccCCCcCC--HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3457999999999999999989988876 678999999999999999988763
No 23
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=63.08 E-value=20 Score=40.71 Aligned_cols=95 Identities=11% Similarity=0.114 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCcccCCCchhhhhheeeeccccccCC----cccccCCc
Q psy4009 89 WTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYG----AKQVTEEC 164 (391)
Q Consensus 89 ~~llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~~~~~~pCv~~~~sF~~AF~FSveT~TTIGYG----d~~Pt~~C 164 (391)
.+|+.++..|++.|-++|++-.+.-..... ... ...-..++..++-|+|.|+.++.--|+. .+.+-...
T Consensus 449 k~L~~Iv~~Y~~~~~llG~i~l~~wi~~~~--~~~-----~~l~~~gin~~W~aiFhAVSAFnNAGFsL~~dSM~~F~~~ 521 (800)
T TIGR00934 449 KCLCSIVLVYFLGFNILGFVLLLPWINHVK--TYS-----EVVRSKGVSPTWWGFFTAMSAFANLGLTLTPESMVSFNKN 521 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cHH-----HHHhhcCccHHHHHHHHHHHHHhcCCCCcCCCcchhhccC
Confidence 467788888999999888765543322110 000 0000125678899999999999999984 24444555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4009 165 PEAIFILCLQSIVGVMIQAFMVGIVF 190 (391)
Q Consensus 165 p~g~~l~~iq~l~Glll~A~~~Givf 190 (391)
+.-.+++++.+++|=+...++.=++.
T Consensus 522 ~~vllvm~~LIi~GntGFPVllrlii 547 (800)
T TIGR00934 522 SYLLLLMIWFIIIGNTGFPIFLRLII 547 (800)
T ss_pred ccHHHHHHHHHHHcccchHHHHHHHH
Confidence 67778999999999888888776554
No 24
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=55.28 E-value=10 Score=32.36 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=47.1
Q ss_pred CCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q psy4009 136 IHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 199 (391)
Q Consensus 136 ~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~R 199 (391)
..++..+|++.+.+++. +-++..|.. ..++++.++=.++++++.+.-+|.+.+.+..|+..
T Consensus 42 ~~~~~~~~~~~~~~~~~-q~~~~~~~s--~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~ 102 (148)
T PF00060_consen 42 RFSLSNSFWYTFGTLLQ-QGSSIRPRS--WSGRILLAFWWLFSLILIASYTANLTSFLTVPKYE 102 (148)
T ss_dssp HHHHHHHHHHCCCCCHH-HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT
T ss_pred cccHHHHHHHHHHhhcc-ccccccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcC
Confidence 45688899999988877 444555654 67899999999999999999999999999999765
No 25
>KOG3676|consensus
Probab=39.36 E-value=1.3e+02 Score=34.22 Aligned_cols=102 Identities=17% Similarity=0.260 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCcccCCCchhhh-hheeeec-cccccCCcccccCCc---hh
Q psy4009 92 LVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSC-FLFSVET-QHTIGYGAKQVTEEC---PE 166 (391)
Q Consensus 92 lif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~~~~~~pCv~~~~sF~~A-F~FSveT-~TTIGYGd~~Pt~~C---p~ 166 (391)
+=|+++|++.-+.|+-.+|++...+ | ....++... .-.....+..++ --|.+++ ..||||||..-..+. ..
T Consensus 544 ~RF~~IY~Vfl~GFsqAfy~if~~~-~--~~~~~~~~~-~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~ 619 (782)
T KOG3676|consen 544 FRFLLIYLVFLVGFSQAFYSIFQTC-D--RDSSPNDKN-VESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVL 619 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-C--ccccccccc-ccccccCChhhHHHHHHHHHHHHhhhhhhhhhcccccchHH
Confidence 3455667777777887777764322 1 110000000 000012233333 1222333 689999998755533 22
Q ss_pred H-HHHHHHHHHHHHHHHHHHH---HHHHHHHhCcc
Q psy4009 167 A-IFILCLQSIVGVMIQAFMV---GIVFAKLSRPK 197 (391)
Q Consensus 167 g-~~l~~iq~l~Glll~A~~~---GivfaK~SRP~ 197 (391)
+ +++++...++-+++.-+++ |-.+.+++.-.
T Consensus 620 ~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s 654 (782)
T KOG3676|consen 620 FKILFVAYMILVTILLLNMLIAMMGNTYETVAQES 654 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Confidence 3 3555566666666555444 44555665443
No 26
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=35.82 E-value=1.6e+02 Score=30.29 Aligned_cols=61 Identities=16% Similarity=0.283 Sum_probs=44.1
Q ss_pred CCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhCc
Q psy4009 136 IHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVG-----------VMIQAFMVGIVFAKLSRP 196 (391)
Q Consensus 136 ~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~G-----------lll~A~~~GivfaK~SRP 196 (391)
...+..+.+|.+.+.+|-||.......-.+.+.++..+-+++| +.-.+++...+.+.+.|-
T Consensus 229 ~~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~gSTaGGiK~~r~~vl~~~~~~~~~~~ 300 (390)
T TIGR00933 229 FGALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCSGSTAGGIKTTTFAILLKQVYREIRRG 300 (390)
T ss_pred HHHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCCcccCCchHHHHHHHHHHHHHHHHHcc
Confidence 3568899999999999999987654443456778888888888 444566666666666633
No 27
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=31.51 E-value=3.3e+02 Score=30.25 Aligned_cols=108 Identities=11% Similarity=0.144 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCcccCCCchhhhhheeeec--cccccCCcccccCCc---h
Q psy4009 91 LLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVET--QHTIGYGAKQVTEEC---P 165 (391)
Q Consensus 91 llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~~~~~~pCv~~~~sF~~AF~FSveT--~TTIGYGd~~Pt~~C---p 165 (391)
++-|+++|++..+.||...+.+-....+.......+.....|-....+|.+ ++.|+.| .+++|.|+.....++ .
T Consensus 508 l~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~s~~~lf~~~~G~~~~~~~~~~~~~~ 586 (743)
T TIGR00870 508 ILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHARSCEKQGNAYST-LFETSQELFWAIIGLGDLLANEHKFTEF 586 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccC-HHHHHHHHHHHHcCCcccccccccchhH
Confidence 345666677777778876665532221111000000000111111122221 2223322 246777765222211 1
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q psy4009 166 EA-IFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 199 (391)
Q Consensus 166 ~g-~~l~~iq~l~Glll~A~~~GivfaK~SRP~~R 199 (391)
.| +++++...++-+++.-++++++---+.+-+..
T Consensus 587 ~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~ 621 (743)
T TIGR00870 587 VGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADD 621 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 23 35555555566666666666665555555444
No 28
>KOG1341|consensus
Probab=29.73 E-value=1.6e+02 Score=33.08 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCcccccCCCCCCCCcccCCCchhhhhheeeeccccccCCc----cc
Q psy4009 88 RWTLLVFALNFLLSWLMFAIVWWLI----VYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGA----KQ 159 (391)
Q Consensus 88 r~~llif~~~yl~~~llFA~ly~li----~~~~gdl~~~~~~~~~~~pCv~~~~sF~~AF~FSveT~TTIGYGd----~~ 159 (391)
-.++..++++|.+.|=+-|++-+++ +...++...- .++..-+=|||=|+.++.-.||-- +.
T Consensus 460 lk~Lcsil~vY~l~~nIvafV~llv~i~t~k~~~eVv~~-----------~gisp~ww~~FTs~S~F~nlGfslt~~smv 528 (854)
T KOG1341|consen 460 LKCLCSILVVYFLGWNIVAFVTLLVFIYTAKTSREVVRS-----------KGISPGWWAFFTSMSAFNNLGFSLTPDSMV 528 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhccc-----------CCCCcchhhhhhHHHHHhccCcccCccccc
Confidence 3556777777777776666533332 1111222110 234444567777888888899852 33
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH---HHhC--------------cccccceeeecccee
Q psy4009 160 VTEECPEAIFILCLQSIVGVMIQAFMVGIVFA---KLSR--------------PKKRTQTLLFSRINC 210 (391)
Q Consensus 160 Pt~~Cp~g~~l~~iq~l~Glll~A~~~Givfa---K~SR--------------P~~Ra~TI~FS~~lc 210 (391)
+-..-++-.++.+.++|+|-..+-++.-+++- |++| -.+|..|++|+.++|
T Consensus 529 sF~kai~plil~~~fIi~GNTgFPi~Lr~iIWimyKit~~~~~~~Eal~fLldHpRrcfTlLfps~~t 596 (854)
T KOG1341|consen 529 SFNKAIFPLILMIPFIIIGNTGFPIFLRFIIWIMYKITRFSSQFKEALYFLLDHPRRCFTLLFPSGAT 596 (854)
T ss_pred ccccchhHHHHHHHHHHHcCCCchHHHHHHHHHhhhcccchhhHHHhhhHHhcCCcceeEEEecCccc
Confidence 33444556788999999997666555554332 3331 125778899988665
No 29
>KOG3927|consensus
Probab=29.30 E-value=69 Score=32.43 Aligned_cols=28 Identities=21% Similarity=0.520 Sum_probs=22.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4009 86 QWRWTLLVFALNFLLSWLMFAIVWWLIV 113 (391)
Q Consensus 86 ~Wr~~llif~~~yl~~~llFA~ly~li~ 113 (391)
+|-++++++++.|.+.-.+|++.+|++.
T Consensus 43 sW~~IllfYivFY~~la~lf~~~~~~~~ 70 (300)
T KOG3927|consen 43 SWAKILLFYIVFYGVLAALFAGCMWFML 70 (300)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666888888999999999998776654
No 30
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=28.82 E-value=60 Score=32.42 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=27.0
Q ss_pred cccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4009 152 TIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAK 192 (391)
Q Consensus 152 TIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK 192 (391)
|+--|.+.++++ .+++=.+-+.+|+++.++++|+-++-
T Consensus 55 t~~~~~~~i~~~---~W~~P~v~~~~G~~~v~liLgl~ig~ 92 (279)
T PF07271_consen 55 TNQIQGRPITEQ---SWFIPVVGGSAGLLAVALILGLAIGI 92 (279)
T ss_pred cceeCCeecccc---cceeeeccchhhHHHHHHHHHHhhcc
Confidence 555566666664 56666677788888888888876654
No 31
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=28.17 E-value=95 Score=31.90 Aligned_cols=51 Identities=10% Similarity=0.160 Sum_probs=35.4
Q ss_pred CchhhhhheeeeccccccCCccccc----CCchhHHHHHHHHHHHHHHHHHHHHH
Q psy4009 137 HSFTSCFLFSVETQHTIGYGAKQVT----EECPEAIFILCLQSIVGVMIQAFMVG 187 (391)
Q Consensus 137 ~sF~~AF~FSveT~TTIGYGd~~Pt----~~Cp~g~~l~~iq~l~Glll~A~~~G 187 (391)
.++.+|++-|+.+.+|=|+.-.... -+-|...++.++-+++|-+-.++..-
T Consensus 127 ~~~~~Aif~avSa~~taGFs~~~~~~~~~~~~~~i~~v~~~lm~iGg~gF~v~~~ 181 (390)
T TIGR00933 127 MPLFDAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILGGLGFTVHYD 181 (390)
T ss_pred hHHHHHHHHHHHHHhcCCcCCCCCcchhhccChHHHHHHHHHHHHHhcCHHHHHH
Confidence 4689999999999999998654321 12244567777777777766666553
No 32
>COG4291 Predicted membrane protein [Function unknown]
Probab=27.11 E-value=3.9e+02 Score=25.96 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=41.2
Q ss_pred chhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4009 138 SFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVF 190 (391)
Q Consensus 138 sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~Givf 190 (391)
+..|.+|||++--.|----|...++ +..+-++..++++..+.+.+++..-.
T Consensus 170 ~g~DFLYfs~vIgMTaQtsDtnitT--~aMRr~~L~hsilSFFFNtvivAaaV 220 (228)
T COG4291 170 DGWDFLYFSFVIGMTAQTSDTNITT--TAMRRVVLLHSILSFFFNTVIVAAAV 220 (228)
T ss_pred CccchhhhhHhhhhheeccccccCc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999877777667777665 67888999999999999988887543
No 33
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.72 E-value=50 Score=28.72 Aligned_cols=6 Identities=33% Similarity=1.182 Sum_probs=2.4
Q ss_pred hHHHHH
Q psy4009 89 WTLLVF 94 (391)
Q Consensus 89 ~~llif 94 (391)
|+|+++
T Consensus 2 W~l~~i 7 (130)
T PF12273_consen 2 WVLFAI 7 (130)
T ss_pred eeeHHH
Confidence 444333
No 34
>COG3771 Predicted membrane protein [Function unknown]
Probab=24.23 E-value=88 Score=26.35 Aligned_cols=21 Identities=29% Similarity=0.746 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4009 92 LVFALNFLLSWLMFAIVWWLI 112 (391)
Q Consensus 92 lif~~~yl~~~llFA~ly~li 112 (391)
.+|.+-|++.|++||++|.=.
T Consensus 47 ~lF~~G~~lgwli~g~fy~k~ 67 (97)
T COG3771 47 TLFAAGFALGWLICGLFYLKV 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467778899999999998753
No 35
>KOG3599|consensus
Probab=23.38 E-value=3.4e+02 Score=31.18 Aligned_cols=28 Identities=29% Similarity=0.611 Sum_probs=13.0
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4009 83 VDAQWRWTLLVFALNFLLSWLMFAIVWWL 111 (391)
Q Consensus 83 v~~~Wr~~llif~~~yl~~~llFA~ly~l 111 (391)
+...|+-++ .|++++++..+.||.+-++
T Consensus 585 L~ra~~~I~-gf~l~~~I~~~aya~l~~l 612 (798)
T KOG3599|consen 585 LSRAWKEIV-GFALMFLILFFAYAQLGYL 612 (798)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 344454444 3444445444555544444
No 36
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.31 E-value=1.5e+02 Score=26.71 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhCccccc
Q psy4009 179 VMIQAFMVGIVFAKLSRPKKRT 200 (391)
Q Consensus 179 lll~A~~~GivfaK~SRP~~Ra 200 (391)
-++.++++|.+++|+..++.|.
T Consensus 14 gLvvGi~IG~li~Rlt~~~~k~ 35 (138)
T COG3105 14 GLVVGIIIGALIARLTNRKLKQ 35 (138)
T ss_pred HHHHHHHHHHHHHHHcchhhhh
Confidence 3456778999999999887764
No 37
>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function. Some members are annotated as Ssl0352 however this cannot be confirmed. Currently there is no known function. ; PDB: 3C4S_B 2JZ2_A.
Probab=20.28 E-value=66 Score=24.46 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=19.8
Q ss_pred eccCeeEEeecCCCCCCCCCCHhhhccCCEEEEEEEEE
Q psy4009 221 FIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEG 258 (391)
Q Consensus 221 l~~p~tv~H~IDe~SPLy~~t~~~L~~~~~EivV~l~G 258 (391)
+++|=+.+-++|++|+.|+..--==+-.|--.-|++||
T Consensus 1 ~ilPG~~V~V~n~~~~Y~~y~G~VQRvsdgkaaVLFEG 38 (53)
T PF11623_consen 1 MILPGSTVRVKNPNDIYYGYEGFVQRVSDGKAAVLFEG 38 (53)
T ss_dssp ---TT-EEEE--TTSTTTT-EEEEEEEETTEEEEEEEE
T ss_pred CccCCCEEEEeCCCCccchheEEEEEeeCCeEEEEecC
Confidence 35788899999999999998421101123345567776
No 38
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=20.11 E-value=2.6e+02 Score=30.49 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=17.9
Q ss_pred eEEeecCCCCCCCCCCHhhhcc
Q psy4009 226 TIVHKINPMSPLYTLSAADMLR 247 (391)
Q Consensus 226 tv~H~IDe~SPLy~~t~~~L~~ 247 (391)
.-..+++++||+.+.+-+|+..
T Consensus 219 ~r~~~V~~~s~liGkTl~el~~ 240 (562)
T TIGR03802 219 GRAYRVNRASSLIGKTVGDLEN 240 (562)
T ss_pred eEEEEECCCcccCCCcHHHHHh
Confidence 3455789999999999999864
Done!