Query psy4009
Match_columns 391
No_of_seqs 236 out of 774
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 23:03:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sya_A G protein-activated inw 100.0 2.7E-86 9.2E-91 658.5 26.3 274 47-325 3-328 (340)
2 3spc_A Inward-rectifier K+ cha 100.0 4.3E-86 1.5E-90 657.7 25.8 279 46-327 3-334 (343)
3 2qks_A KIR3.1-prokaryotic KIR 100.0 3.9E-70 1.3E-74 539.4 23.6 260 47-327 2-315 (321)
4 1xl4_A Inward rectifier potass 100.0 1.4E-63 4.7E-68 488.7 19.4 243 47-312 8-298 (301)
5 1p7b_A Integral membrane chann 100.0 1.3E-62 4.3E-67 488.0 15.7 246 45-315 21-314 (333)
6 2gix_A Inward rectifier potass 100.0 5.3E-47 1.8E-51 354.0 11.2 137 188-326 15-204 (208)
7 2xky_I Inward rectifier potass 100.0 5E-45 1.7E-49 356.6 15.0 128 197-326 68-248 (309)
8 1u4f_A Inward rectifier potass 100.0 1.8E-45 6.2E-50 354.4 10.7 137 188-326 20-209 (270)
9 3agw_A KIR3.2, G protein-activ 100.0 5.4E-44 1.8E-48 333.7 12.9 133 192-326 21-205 (208)
10 1n9p_A GIRK1, G protein-activa 100.0 1.3E-43 4.3E-48 331.0 9.5 138 186-327 15-204 (207)
11 2k1e_A Water soluble analogue 99.5 2.1E-14 7.3E-19 119.1 7.4 96 87-199 4-99 (103)
12 2a9h_A Voltage-gated potassium 99.4 2.6E-13 9.1E-18 120.9 10.2 85 98-199 59-143 (155)
13 2ih3_C Voltage-gated potassium 99.4 3.9E-13 1.3E-17 114.9 8.6 87 96-199 34-120 (122)
14 3eff_K Voltage-gated potassium 99.4 3.4E-13 1.2E-17 117.0 5.5 95 86-198 4-98 (139)
15 4h33_A LMO2059 protein; bilaye 99.3 1.7E-12 5.8E-17 113.1 6.9 61 136-198 41-101 (137)
16 3ouf_A Potassium channel prote 99.3 1.3E-11 4.3E-16 101.6 8.1 60 137-198 31-90 (97)
17 2q67_A Potassium channel prote 99.2 1.3E-10 4.3E-15 98.3 9.9 60 137-198 48-107 (114)
18 3ldc_A Calcium-gated potassium 99.2 9.7E-11 3.3E-15 93.4 8.5 55 137-193 27-81 (82)
19 1orq_C Potassium channel; volt 99.2 1E-10 3.4E-15 107.7 9.8 82 98-196 140-221 (223)
20 3vou_A ION transport 2 domain 99.1 3.4E-10 1.2E-14 99.2 9.9 53 137-191 51-103 (148)
21 3pjs_K KCSA, voltage-gated pot 99.1 1.9E-13 6.4E-18 122.4 -11.2 63 135-199 64-126 (166)
22 3beh_A MLL3241 protein; transm 99.1 1.9E-10 6.4E-15 112.6 7.9 106 75-199 115-220 (355)
23 2r9r_B Paddle chimera voltage 98.9 3.4E-09 1.2E-13 110.3 8.9 84 99-199 351-434 (514)
24 4gx0_A TRKA domain protein; me 98.9 3.7E-09 1.3E-13 109.7 8.5 80 90-188 19-99 (565)
25 1lnq_A MTHK channels, potassiu 98.6 4.6E-10 1.6E-14 109.0 -8.8 59 137-197 44-102 (336)
26 3um7_A Potassium channel subfa 98.5 1.4E-07 4.9E-12 92.6 6.8 61 137-199 223-289 (309)
27 3ukm_A Potassium channel subfa 98.5 3.2E-07 1.1E-11 89.0 8.5 54 137-190 200-258 (280)
28 3um7_A Potassium channel subfa 98.5 9.1E-08 3.1E-12 94.0 4.5 57 137-195 114-170 (309)
29 3ukm_A Potassium channel subfa 98.4 1.8E-07 6.3E-12 90.7 4.2 59 136-196 91-149 (280)
30 3rvy_A ION transport protein; 98.0 1E-05 3.5E-10 76.9 8.1 108 75-199 134-245 (285)
31 4dxw_A Navrh, ION transport pr 93.0 0.36 1.2E-05 43.8 8.9 65 134-198 161-228 (229)
32 1n9p_A GIRK1, G protein-activa 69.2 1.2 4E-05 41.1 0.5 25 47-71 2-26 (207)
33 3kg2_A Glutamate receptor 2; I 39.2 19 0.00066 37.8 3.7 60 137-199 562-621 (823)
34 2zxe_B Na+,K+-ATPase beta subu 22.1 74 0.0025 30.8 4.2 27 86-112 32-58 (305)
35 3agw_A KIR3.2, G protein-activ 20.6 17 0.00057 33.4 -0.7 25 46-70 3-27 (208)
36 2l2t_A Receptor tyrosine-prote 20.5 2.1E+02 0.007 20.0 5.1 12 177-188 18-29 (44)
No 1
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=100.00 E-value=2.7e-86 Score=658.55 Aligned_cols=274 Identities=50% Similarity=0.955 Sum_probs=257.6
Q ss_pred ccccCceEeeCCceeEEecCchhhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy4009 47 RRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGN 126 (391)
Q Consensus 47 ~~~~~Rlv~K~G~~NV~~~~~~~~~~ryl~DlfttLv~~~Wr~~llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~~ 126 (391)
|++|+|+|+|||+|||+++|+ +++.+|++|+||++++++|++++++|+++|+++|++||++||++++.|||+.+.+ +
T Consensus 3 ~~~~~R~v~k~G~~nv~~~~~-~~~~~~~~D~f~tlv~l~Wr~~llif~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~--~ 79 (340)
T 3sya_A 3 KRKIQRYVRKDGKCNVHHGNV-RETYRYLTDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIE--D 79 (340)
T ss_dssp ---CCCSBCTTSCBCCCCCCC-CCTHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSS--C
T ss_pred CcccceEEecCCcEEEEEcCc-ccchHHHHhHHHHheeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc--c
Confidence 667889999999999999988 5688999999999999999999999999999999999999999999999986432 4
Q ss_pred CCCCCcccCCCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccceeeec
Q psy4009 127 ATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFS 206 (391)
Q Consensus 127 ~~~~pCv~~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~Ra~TI~FS 206 (391)
.+|+||+.++.+|.+|||||++|+|||||||++|+++||.|++++++|+++|++++|+++|++|+|++||++|++||+||
T Consensus 80 ~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ra~ti~FS 159 (340)
T 3sya_A 80 PSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFS 159 (340)
T ss_dssp SSCCCSBSCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGGEEEC
T ss_pred ccccchhccccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCceEEec
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c---------ceeEee-------------------------------------------ccCcceeeccCeeEEeecCCC
Q psy4009 207 R---------INCLQT-------------------------------------------SVEDKIFFIWPTTIVHKINPM 234 (391)
Q Consensus 207 ~---------~lcLmf-------------------------------------------~~~~~~fl~~p~tv~H~IDe~ 234 (391)
+ ++|||| .+.+++||.+||||+|+|||+
T Consensus 160 ~~AVI~~~dG~~~LmfRv~n~R~~~liea~vr~~l~~~~~t~eGe~~~l~~~~l~~~~d~~~~~~fl~~p~tv~H~Ide~ 239 (340)
T 3sya_A 160 THAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQQ 239 (340)
T ss_dssp SCEEEEEETTEEEEEEEEEECSSSCEEEEEEEEEEECCEECTTSCEETTCEEEECSSTTTTTTSCCCSSCEEEEEECCTT
T ss_pred ceEEEeccCCeEEEEEEEecCCCCeEEEEEEEEEEEEEEecCCCceEeeEEeeeceeccCCCCcceeeccEEEEEECCCC
Confidence 9 799999 123466899999999999999
Q ss_pred CCCCCCCHhhhccCCEEEEEEEEEeeccccceEEEEEeecCCceecCCeeccceeeecCCCeEEEecCCCCceeeecCCC
Q psy4009 235 SPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPL 314 (391)
Q Consensus 235 SPLy~~t~~~L~~~~~EivV~l~G~destg~tvqaR~SY~~~EI~wg~rF~~~i~~~~~~g~~~VD~~~F~~t~~v~~P~ 314 (391)
||||++++++|+++++||+|+++|+||+|||++|||+||.++||+|||||+||++. ++|+|.|||++||+|+|++||.
T Consensus 240 SPL~~~t~~~L~~~~~EivV~l~G~de~t~~t~qaR~SY~~~eI~wg~rF~~ii~~--~~g~~~vD~s~F~~~~~v~~p~ 317 (340)
T 3sya_A 240 SPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTL--EDGFYEVDYNSFHETYETSTPS 317 (340)
T ss_dssp STTTTCCTTTGGGCCCEEEEEEEEEESSSCCEEEEEEEEEGGGEEETEEECCCEEE--ETTEEEECGGGSSCEEECCCCC
T ss_pred CCccccChhHHhhCCeEEEEEEEEEeccccceEEEEEEEcHHHEecCCEeceeEEc--CCCeEEEEhHHcCcceEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999983 5899999999999999999999
Q ss_pred CCHHhHHHHhh
Q psy4009 315 CSAQALDQLLA 325 (391)
Q Consensus 315 csa~~l~~~~~ 325 (391)
|||+|++|.++
T Consensus 318 csa~~~~~~~~ 328 (340)
T 3sya_A 318 LSAKELAELAN 328 (340)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99999998874
No 2
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=100.00 E-value=4.3e-86 Score=657.72 Aligned_cols=279 Identities=52% Similarity=0.933 Sum_probs=255.8
Q ss_pred cccccCceEeeCCceeEEecCchhhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCC
Q psy4009 46 SRRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLG 125 (391)
Q Consensus 46 ~~~~~~Rlv~K~G~~NV~~~~~~~~~~ryl~DlfttLv~~~Wr~~llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~ 125 (391)
+|++|+|+++|||+|||++.|++.++.+|++|+||++++++|++++++|+++|+++|++||++||+++..|||+...+ +
T Consensus 3 ~~~~~~R~v~k~G~~nv~~~~~~~~~~~~l~Dif~tlv~l~Wr~~ll~f~~~y~~swl~Fally~~ia~~~gdl~~~~-~ 81 (343)
T 3spc_A 3 RRKCRNRFVKKNGQCNVEFTNMDDKPQRYIADMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLIFWLIALIHGDLENPG-G 81 (343)
T ss_dssp ---CCCCSBCTTSCBCCCCCSCCCCC-----CHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCTT-C
T ss_pred CCcccceeEecCCcEEEEecCCCccchhHHHHHHHHHeeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-c
Confidence 567788999999999999999987778999999999999999999999999999999999999999999999986433 3
Q ss_pred CCCCCCcccCCCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccceeee
Q psy4009 126 NATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLF 205 (391)
Q Consensus 126 ~~~~~pCv~~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~Ra~TI~F 205 (391)
+++|+||+.++.+|.+|||||++|+|||||||++|+++||.|++++++|+++|++++|+++|++|+|++||++|++||+|
T Consensus 82 ~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r~~ti~F 161 (343)
T 3spc_A 82 DDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLF 161 (343)
T ss_dssp CSSCCCSEETCCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCCEEE
T ss_pred cccccccccccCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCcEEe
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc---------ceeEee-------------------------------------------ccCcceeeccCeeEEeecCC
Q psy4009 206 SR---------INCLQT-------------------------------------------SVEDKIFFIWPTTIVHKINP 233 (391)
Q Consensus 206 S~---------~lcLmf-------------------------------------------~~~~~~fl~~p~tv~H~IDe 233 (391)
|+ ++|||| .+.+++||.+||||+|+|||
T Consensus 162 S~~AVI~~~dG~~~LmfRv~n~R~~~liea~vr~~l~r~~~t~eGe~~~l~~~~l~~~~d~~~~~~fl~~p~tv~H~IDe 241 (343)
T 3spc_A 162 SHNAVVAMRDGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLVSPITILHEINE 241 (343)
T ss_dssp CSCEEEEEETTEEEEEEEEEESSSSCEEEEEEEEEEEEEEECTTSCEEEEEEEEECSSGGGTTTBCCCSSCEEEEEECCT
T ss_pred ccceEEecCCCcEEEEEEEecCCCCeEEEEEEEEEEEEEEEcCCCcEEeeEEEEeeecccCCCCcceeeccEEEEEeCCC
Confidence 99 799999 12245789999999999999
Q ss_pred CCCCCCCCHhhhccCCEEEEEEEEEeeccccceEEEEEeecCCceecCCeeccceeeecCCCeEEEecCCCCceeeec-C
Q psy4009 234 MSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVH-T 312 (391)
Q Consensus 234 ~SPLy~~t~~~L~~~~~EivV~l~G~destg~tvqaR~SY~~~EI~wg~rF~~~i~~~~~~g~~~VD~~~F~~t~~v~-~ 312 (391)
+||||++++++|++.++||+|+++|+||+|||++|||+||.++||+|||||+||++ .++|+|.|||++||+|+|++ |
T Consensus 242 ~SPL~~~t~~~L~~~~~EivV~l~G~de~t~~t~qaR~SY~~~eI~wg~rF~~ii~--~~~g~~~vD~s~F~~~~~v~~t 319 (343)
T 3spc_A 242 DSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVLF--EEKNQYKVDYSHFHKTYEVPST 319 (343)
T ss_dssp TSTTTTCCHHHHTTCCCEEEEEEEEEETTTCSEEEEEEEEEGGGEEETEEECCCEE--EETTEEEECGGGTTCEEECTTS
T ss_pred CCCcccCCHHHHhhCCeEEEEEEEEEecccCcEEEEEEEEchHHeecCCEeeeeEE--cCCCeEEEEhHHcCCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999998 35899999999999999995 9
Q ss_pred CCCCHHhHHHHhhhc
Q psy4009 313 PLCSAQALDQLLAIH 327 (391)
Q Consensus 313 P~csa~~l~~~~~~~ 327 (391)
|.|||+|++|.+.+.
T Consensus 320 p~csa~~~~~~~~~~ 334 (343)
T 3spc_A 320 PRCSAKDLVENKFLL 334 (343)
T ss_dssp CCSCHHHHHHHHHHH
T ss_pred CCCCHHHHhhhhhhc
Confidence 999999999988664
No 3
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=100.00 E-value=3.9e-70 Score=539.41 Aligned_cols=260 Identities=42% Similarity=0.706 Sum_probs=229.5
Q ss_pred ccccCceEeeCCceeEEecCchhhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy4009 47 RRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGN 126 (391)
Q Consensus 47 ~~~~~Rlv~K~G~~NV~~~~~~~~~~ryl~DlfttLv~~~Wr~~llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~~ 126 (391)
|++++|++.|||+|||++.|+++.+.+|++|+|+++++++|++++++|+++|+++|++|| |++ .+||
T Consensus 2 ~~~~~R~~~k~G~~nv~~~~~~~~~~r~l~dl~~tl~~~~~~~~ll~f~~~~~~~~~~fa--~~~---~eg~-------- 68 (321)
T 2qks_A 2 SKKRQRFVDKNGRCNVQHGNLGSETSRYLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFA--TLY---MLGS-------- 68 (321)
T ss_dssp -CCCCCSBCTTSCBCCCCCC-------CCHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HHH---HTSS--------
T ss_pred CCCccceeeeCCcEEEEEecccchhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH--HHH---HcCC--------
Confidence 456789999999999999999777789999999999999999999999999999999999 442 2343
Q ss_pred CCCCCcccCCC--chhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccceee
Q psy4009 127 ATWTPCVTSIH--SFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLL 204 (391)
Q Consensus 127 ~~~~pCv~~~~--sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~Ra~TI~ 204 (391)
.|..++. +|.+|||||++|+|||||||++|.+ +.|++++++++++|+++.|+++|++++++++|++|+++++
T Consensus 69 ----~~~~~~~~~s~~~a~y~s~vT~tTVGYGDi~P~t--~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~r~~~i~ 142 (321)
T 2qks_A 69 ----APIANQFPAGFGGAFFFSVETLATVGYGDMHPQT--VYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKRAETLM 142 (321)
T ss_dssp ----SCBTTCSSTTHHHHHHHHHHHHTTCCCCSSCBCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGGTEE
T ss_pred ----ccccCcCCcchhheeeeeeEEeccccCCCcCccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 2556677 9999999999999999999999986 6899999999999999999999999999999999999999
Q ss_pred ecc---------ceeEee-------------------------------------------ccCcceeeccCeeEEeecC
Q psy4009 205 FSR---------INCLQT-------------------------------------------SVEDKIFFIWPTTIVHKIN 232 (391)
Q Consensus 205 FS~---------~lcLmf-------------------------------------------~~~~~~fl~~p~tv~H~ID 232 (391)
||+ ++|||| .++++++|.+||||+|+||
T Consensus 143 fS~~avI~~~~g~~~L~fRv~n~r~~~li~a~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv~H~Id 222 (321)
T 2qks_A 143 FSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVID 222 (321)
T ss_dssp ECSCEEEEEETTEEEEEEEEEECSCCCEEEEEEEEEEEEEEECTTCCEEEEEEEEECSSTTTTTTBCCCSSCEEEEEECS
T ss_pred cCCceEEecCCCceEEEEEecccccCeeeeeEEEEEEEEEEecCCCcEEEeEEeeeecccCCCCCceEEEccEEEEEECC
Confidence 999 789998 1345678999999999999
Q ss_pred CCCCCCCCCHhhhccCCEEEEEEEEEeeccccceEEEEEeecCCceecCCeeccceeeecCCCeEEEecCCCCceeeecC
Q psy4009 233 PMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHT 312 (391)
Q Consensus 233 e~SPLy~~t~~~L~~~~~EivV~l~G~destg~tvqaR~SY~~~EI~wg~rF~~~i~~~~~~g~~~VD~~~F~~t~~v~~ 312 (391)
|+||||++++++|.+.++||+|+++|+||+|||++|||+||.++||+|||||+||++.+ +|.|.|||++||+++|+++
T Consensus 223 ~~SPL~~~~~~~L~~~~~eivV~l~G~~e~t~~t~~ar~sY~~~eI~wg~rF~~i~~~~--~~~~~vD~~~f~~~~~~~~ 300 (321)
T 2qks_A 223 AKSPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLE--EGFFKVDYSQFHATFEVPT 300 (321)
T ss_dssp TTSTTTTCCHHHHTTCCCEEEEEEEEEETTTTEEEEEEEEEEGGGEEETEEECCCEEEC--SSSEEECGGGSSCEEECCC
T ss_pred CCCCccccCHhHHhcCCeEEEEEEEEEehhcCcEEEEEEEEChHHeecCCEeceeeEEc--CCcEEEehHHhCCceecCC
Confidence 99999999999999999999999999999999999999999999999999999999853 4449999999999999999
Q ss_pred CCCCHHhHHHHhhhc
Q psy4009 313 PLCSAQALDQLLAIH 327 (391)
Q Consensus 313 P~csa~~l~~~~~~~ 327 (391)
|.|||+||+|.+.+.
T Consensus 301 p~~sa~~~~~~~~~~ 315 (321)
T 2qks_A 301 PPYSVKEQEEMLLMS 315 (321)
T ss_dssp CSSCHHHHHCC----
T ss_pred CCcCHHHHHhhcCCC
Confidence 999999999987553
No 4
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=100.00 E-value=1.4e-63 Score=488.73 Aligned_cols=243 Identities=25% Similarity=0.449 Sum_probs=217.6
Q ss_pred ccccCceEeeCCceeEEecCchhhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy4009 47 RRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGN 126 (391)
Q Consensus 47 ~~~~~Rlv~K~G~~NV~~~~~~~~~~ryl~DlfttLv~~~Wr~~llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~~ 126 (391)
.++++|++.|||+|||++.|++.+ .|++|+|+++++++|++++++++++|+++|++||++||+++ ++.. +
T Consensus 8 ~~~~~r~~~k~G~~nv~~~~~~~~--~~l~d~~~~~l~~~~~~ll~~~~~~~~~~~l~fa~ly~~~~---~~~~-----~ 77 (301)
T 1xl4_A 8 PARKPRILNSDGSSNITRLGLEKR--GWLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACG---DVIE-----N 77 (301)
T ss_dssp ---CCCSBCTTSCBCCEESSCCCC--CSSCSSTTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTC---SCST-----T
T ss_pred ccccceeEecCCcEEEEECCcchh--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccC-----C
Confidence 346779999999999999998532 37799999999999999999999999999999999988753 1110 0
Q ss_pred CCCCCcccCCCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccceeeec
Q psy4009 127 ATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFS 206 (391)
Q Consensus 127 ~~~~pCv~~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~Ra~TI~FS 206 (391)
....+|.+|||||++|+|||||||++|. |+.|++++++|+++|+++.|+++|+++++++||++| +.||
T Consensus 78 -------~~~~s~~~a~yfs~vT~tTvGYGDi~P~--t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~~r---~~fs 145 (301)
T 1xl4_A 78 -------ARPGSFTDAFFFSVQTMATIGYGKLIPI--GPLANTLVTLEALCGMLGLAVAASLIYARFTRPTAG---VLFS 145 (301)
T ss_dssp -------SCTTCHHHHHHHHHHHHTTCCCSSSCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC---EEEC
T ss_pred -------CCcCCHHHHHHHhhhheeccCCCCCcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh---hccC
Confidence 2468999999999999999999999985 689999999999999999999999999999999998 8999
Q ss_pred c---------ceeEee--------------------------cc-------------CcceeeccCeeEEeecCCCCCCC
Q psy4009 207 R---------INCLQT--------------------------SV-------------EDKIFFIWPTTIVHKINPMSPLY 238 (391)
Q Consensus 207 ~---------~lcLmf--------------------------~~-------------~~~~fl~~p~tv~H~IDe~SPLy 238 (391)
+ ++|||| +| +++++|.+||+++|+|||+||||
T Consensus 146 ~~~vI~~~~g~~~l~~R~~n~r~~~li~a~vr~~l~~~~~t~eGe~~~~~~~L~l~~~~~~~l~~p~~v~H~Id~~SPL~ 225 (301)
T 1xl4_A 146 SRMVISDFEGKPTLMMRLANLRIEQIIEADVHLVLVRSEISQEGMVFRRFHDLTLTRSRSPIFSLSWTVMHPIDHHSPIY 225 (301)
T ss_dssp SCEEEEEETTEEEEEEEEEECSSSCEEEEEEEEEEEEEEECTTSCEEEEEEECCCSCCEEEEECSEEEEEEECCTTCTTT
T ss_pred CeEEEecCCCcceeeeeccccccceEEccEEEEEEEEeeEcCCCcEEEEEeccccccCCeEEEEeeEEEEEecCCCCCcc
Confidence 9 789998 11 23578999999999999999999
Q ss_pred CCCHhhhccCCEEEEEEEEEeeccccceEEEEEeecCCceecCCeeccceeeecCCCeEEEecCCCCceeeecC
Q psy4009 239 TLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHT 312 (391)
Q Consensus 239 ~~t~~~L~~~~~EivV~l~G~destg~tvqaR~SY~~~EI~wg~rF~~~i~~~~~~g~~~VD~~~F~~t~~v~~ 312 (391)
++++++|.+.++||+|+++|+||+|||++|||+||.++||+|||||+||+.. .++|+|.|||++||+|+|.+.
T Consensus 226 ~~s~~~L~~~~~eivV~l~G~de~t~~~~~ar~sY~~~eI~wg~rF~~~~~~-~~~g~~~vD~~~f~~~~~~~~ 298 (301)
T 1xl4_A 226 GETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGGHFVDVFTT-LPDGRRALDLGKFHEIAQHHH 298 (301)
T ss_dssp TCCHHHHHHHTCEEEEEEEEEETTTTEEEEEEEEEEGGGEEETCEECCCEEE-CTTSCEEECTTSTTCEECCCC
T ss_pred cCCHhHHhcCCeEEEEEEEEEecccCcEEEEEEeecHHHeeeCCEecceeeE-CCCCcEEEEhHHhcCcccccc
Confidence 9999999999999999999999999999999999999999999999999985 468999999999999999754
No 5
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=100.00 E-value=1.3e-62 Score=487.98 Aligned_cols=246 Identities=27% Similarity=0.430 Sum_probs=199.9
Q ss_pred ccccccCceEeeCCceeEEecCchhhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Q psy4009 45 SSRRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNL 124 (391)
Q Consensus 45 ~~~~~~~Rlv~K~G~~NV~~~~~~~~~~ryl~DlfttLv~~~Wr~~llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~ 124 (391)
..++.++|++.|||+|||.+.+. +.+++.|+|+++++++|++++++++++|+++|++||++||+. ++. ..
T Consensus 21 ~~~~~~~~~~~~~G~~nv~~~~~---~~~~~~d~~~~~l~~~~~~ll~~~~~~~l~~~l~fally~~e----~~~--~~- 90 (333)
T 1p7b_A 21 ARKPPRGGRRIWSGTREVIAYGM---PASVWRDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLG----DAP--IA- 90 (333)
T ss_dssp ---------------CCSSCEEC---CCCHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTSSS----SSC--CC-
T ss_pred cccccceeeEecCCceEEEEccc---cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh----ccc--cc-
Confidence 34555777788999999975543 568999999999999999999999999999999999998863 221 00
Q ss_pred CCCCCCCcccCCCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccceee
Q psy4009 125 GNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLL 204 (391)
Q Consensus 125 ~~~~~~pCv~~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~Ra~TI~ 204 (391)
+ ....+|.+|||||++|+|||||||++|. |+.|++++++++++|+++.|+++|++++++++|++| +.
T Consensus 91 -~-------~~~~s~~~a~yfs~vT~tTVGYGDi~P~--t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~r---~~ 157 (333)
T 1p7b_A 91 -N-------QSPPGFVGAFFFSVETLATVGYGDMHPQ--TVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAK---IM 157 (333)
T ss_dssp -C-------SSSSSTHHHHHHHTTTTTTCCCSCCCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC---CE
T ss_pred -C-------CCCCcHHHhHhhhheeeeecCCCCCcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 0 1357899999999999999999999987 589999999999999999999999999999999999 88
Q ss_pred ecc---------ceeEee---------------------------------------ccCcceeeccCeeEEeecCCCCC
Q psy4009 205 FSR---------INCLQT---------------------------------------SVEDKIFFIWPTTIVHKINPMSP 236 (391)
Q Consensus 205 FS~---------~lcLmf---------------------------------------~~~~~~fl~~p~tv~H~IDe~SP 236 (391)
||+ ++|||| .+++.++|.+||||+|+|||+||
T Consensus 158 fs~~~VI~~~~g~~~L~fRv~n~r~~~li~a~vr~~li~~~~t~eGe~~~~~~~l~l~~~~~~~l~~~~tv~H~Id~~SP 237 (333)
T 1p7b_A 158 FARHAIVRPFNGRMTLMVRAANARQNVIAEARAKMRLMRREHSSEGYSLMKIHDLKLVRNEHPIFLLGWNMMHVIDESSP 237 (333)
T ss_dssp ECSCEEEEECSSSEEEEEEEECCSSCCCCEEEEEEECC----------CCEECCSGGGTTCSCCCCSSEEEEEECSTTST
T ss_pred hCCCEEEcCCCCcceEEEEecccccceEEeeEEEEEEEeeeecCCCcEEeeeeecccccCCCeeEeeeEEEEEeCCCCCC
Confidence 998 789999 11235678899999999999999
Q ss_pred CCCCCHhhhccCCEEEEEEEEEeeccccceEEEEEeecCCceecCCeeccceeeecCCCeEEEecCCCCceeeecCCCC
Q psy4009 237 LYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLC 315 (391)
Q Consensus 237 Ly~~t~~~L~~~~~EivV~l~G~destg~tvqaR~SY~~~EI~wg~rF~~~i~~~~~~g~~~VD~~~F~~t~~v~~P~c 315 (391)
||++++++|.+.++||+|+++|+||+|||++|||+||.++||+|||||+||++. ++|+|.|||++||+++|+++|.+
T Consensus 238 L~~~s~~~L~~~~~eivV~l~G~de~t~~t~qar~sY~~~eI~wg~rF~~i~~~--~~g~~~vD~~~f~~~~~~~~~~~ 314 (333)
T 1p7b_A 238 LFGETPESLAEGRAMLLVMIEGSDETTAQVMQARHAWEHDDIRWHHRYVDLMSD--VDGMTHIDYTRFNDTEPVEPPGA 314 (333)
T ss_dssp TSSCCHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEEGGGEEETCCBCCCC--------CCCCCTTSSCBCCC-----
T ss_pred ccccCHhHHhcCCEEEEEEEEEEecccCceEEEEEEechHHeeeCCEechheEe--CCCcEEEEhHHcCCceecCCccc
Confidence 999999999999999999999999999999999999999999999999999983 48999999999999999999988
No 6
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus}
Probab=100.00 E-value=5.3e-47 Score=354.02 Aligned_cols=137 Identities=50% Similarity=0.762 Sum_probs=128.6
Q ss_pred HHHHHHhCcccccceeeecc---------ceeEee-------------------------------------------cc
Q psy4009 188 IVFAKLSRPKKRTQTLLFSR---------INCLQT-------------------------------------------SV 215 (391)
Q Consensus 188 ivfaK~SRP~~Ra~TI~FS~---------~lcLmf-------------------------------------------~~ 215 (391)
++||||+||++||+||+||+ ++|||| .+
T Consensus 15 ~vfakisrP~kRa~tI~FS~~AVI~~~dG~~~LmfRv~n~R~~~iiea~vr~~L~r~~~t~EGe~~~~~~~~L~l~~d~~ 94 (208)
T 2gix_A 15 CNVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLQKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFDSG 94 (208)
T ss_dssp BCEEEECCCCSCSCSEEECSCEEEEEETTEEEEEEEEEECCSSCEEEEEEEEEEEEEEECTTCCEEEEEEEEECSSGGGT
T ss_pred EEEEEecCCcccCCcEEecCeEEEEEeCCEEEEEEEEecCccCeEEeeEEEEEEEEEEeCCCCcEEEEEEEEEEeccCCC
Confidence 47899999999999999999 899999 13
Q ss_pred CcceeeccCeeEEeecCCCCCCCCCCHhhhccCCEEEEEEEEEeeccccceEEEEEeecCCceecCCeeccceeeecCCC
Q psy4009 216 EDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETG 295 (391)
Q Consensus 216 ~~~~fl~~p~tv~H~IDe~SPLy~~t~~~L~~~~~EivV~l~G~destg~tvqaR~SY~~~EI~wg~rF~~~i~~~~~~g 295 (391)
++++||.+||||+|+|||+||||++++++|.+.++||+|+|+|+||+|||++|||+||.++||+|||||+||+. .++|
T Consensus 95 ~~~~fl~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EivV~l~G~dest~qt~qaR~SY~~~eIlWg~rF~~iv~--~~~g 172 (208)
T 2gix_A 95 IDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTKQCRSSYLANEILWGHRYEPVLF--EEKH 172 (208)
T ss_dssp TTEECCSSCEEEEEECCTTSTTTTCCHHHHHTCCCEEEEEEEEEETTTCCEEEEEEEEEGGGEEETEEECCCEE--ECSS
T ss_pred CCceEEeccEEEEEECCCCCCccccChhHHhcCCEEEEEEEEEEecccCcEEEEEEEEchHHEEeCCEeceeEE--cCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999998 3689
Q ss_pred eEEEecCCCCceeeec-CCCCCHHhHHHHhhh
Q psy4009 296 EHEVNYGLFNNTYEVH-TPLCSAQALDQLLAI 326 (391)
Q Consensus 296 ~~~VD~~~F~~t~~v~-~P~csa~~l~~~~~~ 326 (391)
+|.|||++||+|+|++ ||.|||+||+|.+.+
T Consensus 173 ~~~VD~s~F~~~~~v~~tp~csa~~l~~~~~~ 204 (208)
T 2gix_A 173 YYKVDYSRFHKTYEVPNTPLCSARDLAEKKYI 204 (208)
T ss_dssp SEEEEGGGTTCEEECTTSCCSCHHHHHHHHHH
T ss_pred eEEEEhHHcCcceEcCCCCCCCHHHHhhcccc
Confidence 9999999999999996 999999999998754
No 7
>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport, membrane protein; 17.20A {Mus musculus}
Probab=100.00 E-value=5e-45 Score=356.63 Aligned_cols=128 Identities=53% Similarity=0.816 Sum_probs=119.6
Q ss_pred ccccceeeecc---------ceeEee--------------------------c-----------------cCcceeeccC
Q psy4009 197 KKRTQTLLFSR---------INCLQT--------------------------S-----------------VEDKIFFIWP 224 (391)
Q Consensus 197 ~~Ra~TI~FS~---------~lcLmf--------------------------~-----------------~~~~~fl~~p 224 (391)
++||+||+||+ ++|||| + +.+++||.+|
T Consensus 68 r~RA~TI~FS~~AVI~~rDG~~cLMFRVaN~R~s~Iiea~Vr~~Lir~~~T~EGe~i~~~~~dL~l~~d~~~~~~fL~~P 147 (309)
T 2xky_I 68 GGRNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFDSGIDRIFLVSP 147 (309)
T ss_pred CCCcceEEEeccEEEEEECCEEEEEEEEecCcCCeEEccEEEEEEEEEEEcCCCcEEEeeeeeeecccCCCCcceeEecc
Confidence 78889999999 899999 1 1256799999
Q ss_pred eeEEeecCCCCCCCCCCHhhhccCCEEEEEEEEEeeccccceEEEEEeecCCceecCCeeccceeeecCCCeEEEecCCC
Q psy4009 225 TTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLF 304 (391)
Q Consensus 225 ~tv~H~IDe~SPLy~~t~~~L~~~~~EivV~l~G~destg~tvqaR~SY~~~EI~wg~rF~~~i~~~~~~g~~~VD~~~F 304 (391)
|||+|+|||+||||++++++|.+.+|||||+|+|+||+|||++|||+||+++||+|||||+||+. .++|+|.|||++|
T Consensus 148 ~tV~H~IDe~SPLy~~t~e~L~~~dfEIVV~LeG~dEsTgqtvqARtSY~~~EIlWGhRF~piv~--~~~G~y~VD~s~F 225 (309)
T 2xky_I 148 ITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGHRYEPVLF--EEKHYYKVDYSRF 225 (309)
T ss_pred EEEEEECCCCCCccccChhhHhcCCeEEEEEEEEEecccCceEEEEEEEchHHeeeCCEeceeEE--cCCCeEEEEhHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999998 3689999999999
Q ss_pred Cceeeec-CCCCCHHhHHHHhhh
Q psy4009 305 NNTYEVH-TPLCSAQALDQLLAI 326 (391)
Q Consensus 305 ~~t~~v~-~P~csa~~l~~~~~~ 326 (391)
|+|+|++ ||+|||+||++.+.+
T Consensus 226 h~t~pv~~tP~cSa~~l~e~~~~ 248 (309)
T 2xky_I 226 HKTYEVPNTPLCSARDLAEKKYI 248 (309)
T ss_pred CcceecCCCCCCCHHHHhhhhcc
Confidence 9999998 999999999997754
No 8
>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus}
Probab=100.00 E-value=1.8e-45 Score=354.38 Aligned_cols=137 Identities=51% Similarity=0.768 Sum_probs=127.5
Q ss_pred HHHHHHhCcccccceeeecc---------ceeEee-------------------------------------------cc
Q psy4009 188 IVFAKLSRPKKRTQTLLFSR---------INCLQT-------------------------------------------SV 215 (391)
Q Consensus 188 ivfaK~SRP~~Ra~TI~FS~---------~lcLmf-------------------------------------------~~ 215 (391)
++||||+||++||+||+||+ ++|||| .+
T Consensus 20 ~vFaKiSrPkkRa~tI~FS~~AVI~~rdG~~~LMfRVaN~R~s~Iiea~Vrl~Lir~~~T~EGe~~~~~~~dL~l~~d~~ 99 (270)
T 1u4f_A 20 CNVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFDSG 99 (270)
T ss_dssp BCEEEESCCCTTTCSEEECSSEEEEEETTEEEEEEEEEECSSSCEEEEEEEEEEEEEEECTTCCEEEEEEEECCSSTTTT
T ss_pred EEEEEccCCcCCCceEEecCcEEEEEeCCEEEEEEEEecCCCCeEEeeEEEEEEEEEEEcCCCcEEEeEEEEEEeccCCC
Confidence 47999999999999999999 899999 12
Q ss_pred CcceeeccCeeEEeecCCCCCCCCCCHhhhccCCEEEEEEEEEeeccccceEEEEEeecCCceecCCeeccceeeecCCC
Q psy4009 216 EDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETG 295 (391)
Q Consensus 216 ~~~~fl~~p~tv~H~IDe~SPLy~~t~~~L~~~~~EivV~l~G~destg~tvqaR~SY~~~EI~wg~rF~~~i~~~~~~g 295 (391)
++++||.+||||+|+|||+||||++++++|.+.+|||||+|+|+||+|||++|||+||+++||+|||||+||+. .++|
T Consensus 100 ~~~~fL~~P~tV~H~IDe~SPLy~~t~e~L~~~d~EIvV~LeG~dEsTgqtvqARtSY~~~EIlWghRF~~iv~--~~~G 177 (270)
T 1u4f_A 100 IDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGHRYEPVLF--EEKH 177 (270)
T ss_dssp TTEECCSSCEEEEEECCTTSTTTTCCHHHHHHCCCEEEEEEEEEETTCSCEEEEEEEEEGGGEEETEEECCCEE--ECSS
T ss_pred CCceEEeccEEEEEECCCCCCccccChhhHhcCCeEEEEEEEEEecccCcEEEEEEEEchHHEEeCCEeceeEE--cCCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999998 3689
Q ss_pred eEEEecCCCCceeeec-CCCCCHHhHHHHhhh
Q psy4009 296 EHEVNYGLFNNTYEVH-TPLCSAQALDQLLAI 326 (391)
Q Consensus 296 ~~~VD~~~F~~t~~v~-~P~csa~~l~~~~~~ 326 (391)
+|.|||++||+|+|++ ||+|||+||++.+..
T Consensus 178 ~y~VD~s~Fh~t~pv~~tP~csa~~l~e~~~~ 209 (270)
T 1u4f_A 178 YYKVDYSRFHKTYEVPNTPLCSARDLAEKKYI 209 (270)
T ss_dssp SEEEEGGGSSCEEECTTSCCSCHHHHHHHC--
T ss_pred eEEEEhHHcCcceecCCCCCCCHHHHhhhhcc
Confidence 9999999999999996 999999999997754
No 9
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A
Probab=100.00 E-value=5.4e-44 Score=333.68 Aligned_cols=133 Identities=46% Similarity=0.747 Sum_probs=121.1
Q ss_pred HHhCcccccceeeecc---------ceeEee-------------------------------------------ccCcce
Q psy4009 192 KLSRPKKRTQTLLFSR---------INCLQT-------------------------------------------SVEDKI 219 (391)
Q Consensus 192 K~SRP~~Ra~TI~FS~---------~lcLmf-------------------------------------------~~~~~~ 219 (391)
+.++|++||+||+||+ ++|||| .+++++
T Consensus 21 ~~~~pk~Ra~tI~FS~~AVI~~~dG~~~LmfRv~n~R~~~iiea~vr~~L~~~~~t~EGe~~~~~~~dL~l~~d~~~~~~ 100 (208)
T 3agw_A 21 HGNVREKRAETLVFSTHAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRL 100 (208)
T ss_dssp TTCCC---CCCCCBCSCEEEEEETTEEEEEEEECCCTTCCEEEEEEEEEEECCEECTTCCEETTCEEECCSSTTTTTTBC
T ss_pred EeccCCcccccEEecceEEEEecCCeEEEEEEEecCccCeEEeeEEEEEEEEEEECCCCcEEEEEEEeeecccCCCCCce
Confidence 3568889999999999 899999 123457
Q ss_pred eeccCeeEEeecCCCCCCCCCCHhhhccCCEEEEEEEEEeeccccceEEEEEeecCCceecCCeeccceeeecCCCeEEE
Q psy4009 220 FFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEV 299 (391)
Q Consensus 220 fl~~p~tv~H~IDe~SPLy~~t~~~L~~~~~EivV~l~G~destg~tvqaR~SY~~~EI~wg~rF~~~i~~~~~~g~~~V 299 (391)
||.+||||+|+|||+||||++++++|.+.+|||+|+|+|+||+|||++|||+||.++||+|||||+||++. ++|+|.|
T Consensus 101 fl~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EivV~l~G~dest~~t~qaR~SY~~~eIlWg~rF~~iv~~--~~G~~~V 178 (208)
T 3agw_A 101 FLVSPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTL--EDGFYEV 178 (208)
T ss_dssp CCSSCEEEEEECCTTSTTTTCCTTTGGGCCCEEEEEEEEEETTTCSEEEEEEEEEGGGEEETEEECCCEEE--ETTEEEE
T ss_pred EEeccEEEEEECCCCCCccccCHhHHhcCCeEEEEEEEEEehhhCcEEEEEEEEChHHEEeCCEeeeeEEe--cCCeEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999985 6899999
Q ss_pred ecCCCCceeeecCCCCCHHhHHHHhhh
Q psy4009 300 NYGLFNNTYEVHTPLCSAQALDQLLAI 326 (391)
Q Consensus 300 D~~~F~~t~~v~~P~csa~~l~~~~~~ 326 (391)
||++||+|+|+++|.|||+||++.++.
T Consensus 179 D~s~F~~~~pv~~p~~sa~~l~~~~~~ 205 (208)
T 3agw_A 179 DYNSFHETYETSTPSLSAKELAELANR 205 (208)
T ss_dssp CGGGTTCEEECCCCCSCHHHHHHHHTC
T ss_pred EhHHcCcceecCCCcCCHHHHHHHHhh
Confidence 999999999999999999999998764
No 10
>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta barrel, cytoplasmic domain, inward rectifier potassium channel, metal transport; 1.80A {Mus musculus} SCOP: b.1.18.16 PDB: 3k6n_A 1u4e_A
Probab=100.00 E-value=1.3e-43 Score=330.95 Aligned_cols=138 Identities=42% Similarity=0.724 Sum_probs=120.6
Q ss_pred HHHHHHHHhCcccccceeeecc---------ceeEee--------------------------c----------------
Q psy4009 186 VGIVFAKLSRPKKRTQTLLFSR---------INCLQT--------------------------S---------------- 214 (391)
Q Consensus 186 ~GivfaK~SRP~~Ra~TI~FS~---------~lcLmf--------------------------~---------------- 214 (391)
.|++|+|++|| ||+||+||+ ++|||| +
T Consensus 15 ~~v~~~rfsk~--Ra~tI~FS~~AVI~~~dG~~~LmfRv~n~R~~~iiea~vr~~L~r~~~t~EGe~~~~~~~~L~l~~d 92 (207)
T 1n9p_A 15 CNVQHGNLGSE--RAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFS 92 (207)
T ss_dssp BCEEC-----C--CSCCSSBCSCEEEEEETTEEEEEEEECCCSSSCEEEEEEEEEEEEEEECTTSCEEEEEEEECCSSTT
T ss_pred eeeEEeeecCC--ccceEEEeCcEEEEEECCEEEEEEEEecCCCCeEEccEEEEEEEEEEEcCCCcEEEEEEEeeEeecc
Confidence 46788998875 556899999 899999 1
Q ss_pred -cCcceeeccCeeEEeecCCCCCCCCCCHhhhccCCEEEEEEEEEeeccccceEEEEEeecCCceecCCeeccceeeecC
Q psy4009 215 -VEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKE 293 (391)
Q Consensus 215 -~~~~~fl~~p~tv~H~IDe~SPLy~~t~~~L~~~~~EivV~l~G~destg~tvqaR~SY~~~EI~wg~rF~~~i~~~~~ 293 (391)
+++++||.+||||+|+|||+||||++++++|.+.++||+|+|+|+||+|||++||||||.++||+|||||+||++.+
T Consensus 93 ~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EivV~l~G~de~t~~t~qaR~SY~~~eIlWg~rF~~iv~~~-- 170 (207)
T 1n9p_A 93 TGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLE-- 170 (207)
T ss_dssp TTTTEEECSSCEEEEEECCTTSTTTTCCTTGGGTCCCEEEEEEEEEETTTCCBCCEEEEEEGGGEEETEEECCCEEES--
T ss_pred CCCCceEEEccEEEEEeCCCCCCccccCHhHHhcCCeEEEEEEEEEehhhCcEEEEEEEEChHHeeeCCEeeeeEEEc--
Confidence 23457899999999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred CCeEEEecCCCCceeeecCCCCCHHhHHHHhhhc
Q psy4009 294 TGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIH 327 (391)
Q Consensus 294 ~g~~~VD~~~F~~t~~v~~P~csa~~l~~~~~~~ 327 (391)
+|.|.|||++||+|+|+++|.|||+||+|...+.
T Consensus 171 ~~~~~VD~s~F~~~~~v~~p~~sa~~l~e~~~~~ 204 (207)
T 1n9p_A 171 EGFFKVDYSQFHATFEVPTPPYSVKEQEEMLLMS 204 (207)
T ss_dssp SSCEEECGGGSSCEEECCCCCSCHHHHHHHHHHH
T ss_pred CCeEEEEHHHhCCceEcCCCccCHHHHhhhhccC
Confidence 4459999999999999999999999999987654
No 11
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.51 E-value=2.1e-14 Score=119.08 Aligned_cols=96 Identities=15% Similarity=0.111 Sum_probs=77.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCcccCCCchhhhhheeeeccccccCCcccccCCchh
Q psy4009 87 WRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPE 166 (391)
Q Consensus 87 Wr~~llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~~~~~~pCv~~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~ 166 (391)
+.+.++..++..++.++++|.+|+.+.. ++ ++ ....+|.+|||||+.|+|||||||++|.+ +.
T Consensus 4 ~~r~~l~~~~~~~~~~~~~a~~~~~~E~--~~------~~-------~~~~~~~~a~y~~~~T~tTvGyGDi~P~t--~~ 66 (103)
T 2k1e_A 4 HEREAQKAEEELQKVLEEASKKAVEAER--GA------PG-------AALISYPDAIWWSVETATTVGYGDRYPVT--EE 66 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT--TS------TT-------CCCCCGGGTTTTTTGGGGCCSCCSSCCCS--SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcc--CC------CC-------cccccHHHHHHHHHHHHhcccCCCCCCCC--hh
Confidence 4555555566667778888988887642 11 00 24678999999999999999999999986 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q psy4009 167 AIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 199 (391)
Q Consensus 167 g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~R 199 (391)
+++++++++++|+++.++++|.+.+.+.+..+|
T Consensus 67 gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~ 99 (103)
T 2k1e_A 67 GRKVAEQVMKAGIEVFALVTAALATDFVRREEE 99 (103)
T ss_dssp CTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987655
No 12
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.45 E-value=2.6e-13 Score=120.89 Aligned_cols=85 Identities=16% Similarity=0.220 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCcccCCCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHH
Q psy4009 98 FLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIV 177 (391)
Q Consensus 98 yl~~~llFA~ly~li~~~~gdl~~~~~~~~~~~pCv~~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~ 177 (391)
.++.+++||++||.+.. .+ ++ .++.+|.+|||||+.|+|||||||++|.+ +.|++++++++++
T Consensus 59 ~~~~i~~~a~~~~~~E~--~~------~~-------~~~~s~~~a~y~s~vTltTVGYGDi~P~t--~~gr~~~~~~~l~ 121 (155)
T 2a9h_A 59 LVIVLLAGSYLAVLAER--GA------PG-------AALISYPDALWWSVETATTVGYGDLYPVT--LWGRCVAVVVMVA 121 (155)
T ss_dssp HHHHHHHHHHHHHHHHT--TS------SC-------SSTTSHHHHHHHHHHHHTTCCCSSSCCCS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--cC------CC-------CccCcccceeheeeeeeecccCCCCCCCC--hhHHHHHHHHHHH
Confidence 34456778888887641 11 00 25679999999999999999999999986 6899999999999
Q ss_pred HHHHHHHHHHHHHHHHhCcccc
Q psy4009 178 GVMIQAFMVGIVFAKLSRPKKR 199 (391)
Q Consensus 178 Glll~A~~~GivfaK~SRP~~R 199 (391)
|+++.|+++|.+.+.+.+..++
T Consensus 122 Gv~~~a~~~~~i~~~~~~~~~~ 143 (155)
T 2a9h_A 122 GITSYGLVFAAVATWFVGREQE 143 (155)
T ss_dssp HHHHHHHHHHHHHHHHHSCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988654
No 13
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.41 E-value=3.9e-13 Score=114.86 Aligned_cols=87 Identities=10% Similarity=0.171 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCcccCCCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHH
Q psy4009 96 LNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQS 175 (391)
Q Consensus 96 ~~yl~~~llFA~ly~li~~~~gdl~~~~~~~~~~~pCv~~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~ 175 (391)
...++.++++|.+||.+. +++ ++ ....+|.+|+|||+.|+|||||||.+|.+ +.|++++++++
T Consensus 34 ~~~~~~~~~~a~~~~~~E--~~~------~~-------~~~~~~~~a~y~~~~T~tTvGyGDi~P~t--~~gr~~~~~~~ 96 (122)
T 2ih3_C 34 VLLVIVLLAGSYLAVLAE--RGA------PG-------AQLITYPRALWWACETATTVAYGDLYPVT--LWGRLVAVVVM 96 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH--TTS------TT-------CCCCSHHHHHHHHHHHHTTCCCSSSCCCS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhheee--ecC------CC-------CccCccccchhheeeeeeeeecCCCCCCC--ccHHHHHHHHH
Confidence 344556677788887753 211 00 24678999999999999999999999986 68999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccc
Q psy4009 176 IVGVMIQAFMVGIVFAKLSRPKKR 199 (391)
Q Consensus 176 l~Glll~A~~~GivfaK~SRP~~R 199 (391)
++|+.+.++.+|.+.+.+++..+|
T Consensus 97 ~~Gi~~~~~~~~~i~~~~~~~~~~ 120 (122)
T 2ih3_C 97 VAGITSFGLVTAALATWFVGREQE 120 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999877654
No 14
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.37 E-value=3.4e-13 Score=117.00 Aligned_cols=95 Identities=15% Similarity=0.235 Sum_probs=73.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCcccCCCchhhhhheeeeccccccCCcccccCCch
Q psy4009 86 QWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECP 165 (391)
Q Consensus 86 ~Wr~~llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~~~~~~pCv~~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp 165 (391)
.|+.++.. ++.+++.++++|.+||.+. ++. ++ ....+|.+||||++.|+|||||||++|.+ +
T Consensus 4 ~~r~~~~~-~~~~~~~~~~~a~~~~~~e--~~~------~~-------~~~~~~~~a~yf~~~T~tTvGyGd~~P~t--~ 65 (139)
T 3eff_K 4 HWRAAGAA-TVLLVIVLLAGSYLAVLAE--RGA------PG-------AQLITYPRALWWSVETATTVGYGDLYPVT--L 65 (139)
T ss_dssp HHHTHHHH-HHHHHHHHHHHHHHHHHTT--SSC------TT-------CCCCCHHHHHHHHHHHHTTCCCSSSCCCS--S
T ss_pred cHHHHHHH-HHHHHHHHHHHHHHHHHHh--cCC------CC-------cccCCHHHHHHHHheeeecccCCCCcCCC--c
Confidence 34444443 4444566778888887742 111 00 24678999999999999999999999987 5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Q psy4009 166 EAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKK 198 (391)
Q Consensus 166 ~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~ 198 (391)
.+++++++.+++|+.+.++++|.+.+.+.+..+
T Consensus 66 ~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 66 WGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999888876544
No 15
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.32 E-value=1.7e-12 Score=113.09 Aligned_cols=61 Identities=15% Similarity=0.344 Sum_probs=55.1
Q ss_pred CCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Q psy4009 136 IHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKK 198 (391)
Q Consensus 136 ~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~ 198 (391)
..+|.+|+||++.|+|||||||++|.+ +.|++++++.+++|+.+.|+++|.+...+...++
T Consensus 41 ~~~~~~a~y~~~~T~tTvGyGDi~P~t--~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 101 (137)
T 4h33_A 41 INNYPDALWWAIVTATTVGYGDIVPVT--PIGRILASIMMLFGIAFIGMITSTITNFFRCKKP 101 (137)
T ss_dssp CCSHHHHHHHHHHHHTTCCCSSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHcccCCCCCCCC--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999986 6899999999999999999999999887765443
No 16
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.25 E-value=1.3e-11 Score=101.63 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=55.3
Q ss_pred CchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Q psy4009 137 HSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKK 198 (391)
Q Consensus 137 ~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~ 198 (391)
.+|.+|+||++.|+|||||||.+|.+ +.+++++++.+++|+.+.+..+|.+..++..++-
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t--~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~ 90 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQT--DFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 90 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 47899999999999999999999986 6899999999999999999999999999886654
No 17
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.16 E-value=1.3e-10 Score=98.30 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=53.5
Q ss_pred CchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Q psy4009 137 HSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKK 198 (391)
Q Consensus 137 ~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~ 198 (391)
.++.+|+||++.|+|||||||.+|.+ +.+++++++.+++|+.+.+..++.+.++++..+.
T Consensus 48 ~~~~~a~y~~~~T~tTvGyGdi~P~t--~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 107 (114)
T 2q67_A 48 LRPIDALYFSVVTLTTVGAGNFSPQT--DFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 107 (114)
T ss_dssp CCHHHHHHHHHHHHTSCCCSSCCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred CCHHHHHHHHHHHhcceeCCCCccCC--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999986 6899999999999999999999999999976554
No 18
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.15 E-value=9.7e-11 Score=93.42 Aligned_cols=55 Identities=24% Similarity=0.419 Sum_probs=50.4
Q ss_pred CchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4009 137 HSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKL 193 (391)
Q Consensus 137 ~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~ 193 (391)
.+|.+|+|||+.|+|||||||.+|.+ +.+++++.+.++.|+.+.+..+|.+...+
T Consensus 27 ~~~~~a~yf~~~T~tTvGyGdi~P~t--~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 27 ESWTVSLYWTFVTIATVGYGDYSPHT--PLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccCCCCCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999986 68999999999999999999999887654
No 19
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.15 E-value=1e-10 Score=107.69 Aligned_cols=82 Identities=23% Similarity=0.327 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCcccCCCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHH
Q psy4009 98 FLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIV 177 (391)
Q Consensus 98 yl~~~llFA~ly~li~~~~gdl~~~~~~~~~~~pCv~~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~ 177 (391)
.++.+.++|++||.+. +++ ++ .+..++.+|+||++.|+||+||||++|.+ +.|++++++.+++
T Consensus 140 ~~~~~~~~~~~~~~~e--~~~------~~-------~~~~~~~~s~y~~~~t~tTvGyGdi~P~t--~~~~~~~~~~~~~ 202 (223)
T 1orq_C 140 VMLTVLYGAFAIYIVE--YPD------PN-------SSIKSVFDALWWAVVTATTVGYGDVVPAT--PIGKVIGIAVMLT 202 (223)
T ss_dssp HHHHHHHHHHHHHHTT--SSS------TT-------CSCCSHHHHHHHHHHHHTTCCCCSSCCCS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--hCC------cC-------CCcCcchhHHHhHHhHHhccCCCCCCCCC--HhHHHHHHHHHHH
Confidence 3445667777777642 211 01 24679999999999999999999999986 7899999999999
Q ss_pred HHHHHHHHHHHHHHHHhCc
Q psy4009 178 GVMIQAFMVGIVFAKLSRP 196 (391)
Q Consensus 178 Glll~A~~~GivfaK~SRP 196 (391)
|+.+.|+.+|.+.+.+.+.
T Consensus 203 G~~~~~~~i~~i~~~~~~~ 221 (223)
T 1orq_C 203 GISALTLLIGTVSNMFQKI 221 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988753
No 20
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.09 E-value=3.4e-10 Score=99.23 Aligned_cols=53 Identities=17% Similarity=0.101 Sum_probs=48.8
Q ss_pred CchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4009 137 HSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFA 191 (391)
Q Consensus 137 ~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~Givfa 191 (391)
.+|.+|+|||+.|+|||||||.+|.+ +.+++++++.+++|+.+.+.++|.+..
T Consensus 51 ~~~~~a~y~~~~t~tTvGyGd~~p~t--~~~r~~~~~~~~~g~~~~~~~~~~~~~ 103 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTVGDGNFSPQT--DFGKVFTILYIFIGIGLVFGFIHKLAV 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999986 689999999999999999999997765
No 21
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.09 E-value=1.9e-13 Score=122.45 Aligned_cols=63 Identities=14% Similarity=0.272 Sum_probs=57.1
Q ss_pred CCCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q psy4009 135 SIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 199 (391)
Q Consensus 135 ~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~R 199 (391)
...+|.+|||||+.|+|||||||++|.+ +.+++++++.+++|+++.++++|.+.+.+.+..++
T Consensus 64 ~~~~~~~a~yf~~~T~tTvGyGDi~P~t--~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~ 126 (166)
T 3pjs_K 64 QLITYPRALWWSVETATTVGYGDLYPVT--LWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQ 126 (166)
T ss_dssp CCCSTTTTTTTTHHHHSCCCCSSSCCCS--STTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHH
T ss_pred ccCCHHHHHHHHHHHhccccCCCCCCCC--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999987 57999999999999999999999999988876543
No 22
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.06 E-value=1.9e-10 Score=112.60 Aligned_cols=106 Identities=17% Similarity=0.190 Sum_probs=78.3
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCcccCCCchhhhhheeeecccccc
Q psy4009 75 LQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIG 154 (391)
Q Consensus 75 l~DlfttLv~~~Wr~~llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~~~~~~pCv~~~~sF~~AF~FSveT~TTIG 154 (391)
++.+..++.. +.+.++ .+++.+++.+++||+++|.+.. +. .| .++.++.+|+||+++|+||+|
T Consensus 115 ~~~l~~~l~~-~~~~l~-~~~~~~~~~~~~~a~~~~~~e~--~~-----------~~--~~f~~~~~s~y~~~~t~ttvG 177 (355)
T 3beh_A 115 FPVLGRVLAN-EARNLI-GVTTLFGVVLFAVALAAYVIER--DI-----------QP--EKFGSIPQAMWWAVVTLSTTG 177 (355)
T ss_dssp HHHHHHHHHH-THHHHH-HHHHHHHHHHHHHHHHHHHHHT--TT-----------CH--HHHSSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHhhc--CC-----------CC--cccccHHHHHHHHHhheeecC
Confidence 3444444432 333333 3334445667889998887642 11 00 246789999999999999999
Q ss_pred CCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q psy4009 155 YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 199 (391)
Q Consensus 155 YGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~R 199 (391)
|||++|.+ +.+++++++.+++|+++.++.+|.+...+.+..+|
T Consensus 178 ygd~~p~t--~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 220 (355)
T 3beh_A 178 YGDTIPQS--FAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR 220 (355)
T ss_dssp CSSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999985 78999999999999999999999999999876554
No 23
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.87 E-value=3.4e-09 Score=110.26 Aligned_cols=84 Identities=19% Similarity=0.341 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCcccCCCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHH
Q psy4009 99 LLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVG 178 (391)
Q Consensus 99 l~~~llFA~ly~li~~~~gdl~~~~~~~~~~~pCv~~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~G 178 (391)
++.+.+||.+.|.+. +++ ++ .++.+|.+||||+++|+||+||||+.|.+ +.|++++++.+++|
T Consensus 351 ~i~~~if~~~~~~~e--~~~------~~-------~~F~s~~~a~y~~~vT~TTvGYGDi~P~t--~~gr~f~~~~~l~G 413 (514)
T 2r9r_B 351 FIGVILFSSAVYFAE--ADE------RD-------SQFPSIPDAFWWAVVSMTTVGYGDMVPTT--IGGKIVGSLCAIAG 413 (514)
T ss_dssp HHHHHHHHHHHHHHH--TTC------TT-------CSCSSHHHHHHHHHHHHTTCCCSSSCCCS--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhheee--ccC------CC-------ccccchhhhhheeeeEEEecccCCCCCCC--cchHhhehhHHHHH
Confidence 445667887666542 111 00 35789999999999999999999999986 67899999999999
Q ss_pred HHHHHHHHHHHHHHHhCcccc
Q psy4009 179 VMIQAFMVGIVFAKLSRPKKR 199 (391)
Q Consensus 179 lll~A~~~GivfaK~SRP~~R 199 (391)
+++.++.+|++...|++-.+|
T Consensus 414 ~~~l~l~iavI~~~f~~~~~~ 434 (514)
T 2r9r_B 414 VLTIALPVPVIVSNFNYFYHR 434 (514)
T ss_dssp HHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888876443
No 24
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.85 E-value=3.7e-09 Score=109.67 Aligned_cols=80 Identities=16% Similarity=0.422 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcccccCCCCCCCCcccCCCchhhhhheeeeccccccCCcccccCCchhHH
Q psy4009 90 TLLVFALNFLLSWLMFAIVWWLIVY-THGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAI 168 (391)
Q Consensus 90 ~llif~~~yl~~~llFA~ly~li~~-~~gdl~~~~~~~~~~~pCv~~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~ 168 (391)
.++.+++++++..++|+++|+++.+ ..| ...+|.+||||+++|+|||||||++|.+ +.|+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-----------------~~~~~~~~~y~~~~t~tTvGygd~~p~~--~~~~ 79 (565)
T 4gx0_A 19 VLLLYCAFLLVMLLAYASIFRYLMWHLEG-----------------RAYSFMAGIYWTITVMTTLGFGDITFES--DAGY 79 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCCHHHHHHHHHHHHTTCCCCSSCCCS--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------------CCCchhhhhheeeeeeeeecCCCcCCCC--ccHH
Confidence 3444555556666777777766543 111 1248999999999999999999999986 6899
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4009 169 FILCLQSIVGVMIQAFMVGI 188 (391)
Q Consensus 169 ~l~~iq~l~Glll~A~~~Gi 188 (391)
+++++.+++|+++.++.+|.
T Consensus 80 ~~~~~~~~~g~~~~~~~~~~ 99 (565)
T 4gx0_A 80 LFASIVTVSGVIFLDIILPF 99 (565)
T ss_dssp HHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988887
No 25
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.55 E-value=4.6e-10 Score=109.00 Aligned_cols=59 Identities=20% Similarity=0.329 Sum_probs=51.4
Q ss_pred CchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Q psy4009 137 HSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPK 197 (391)
Q Consensus 137 ~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~ 197 (391)
.+|.+||||++.|+|||||||.+|.+ +.+++++++.+++|+.+.++++|.+...+.+..
T Consensus 44 ~~~~~a~y~~~~t~tTvGyGd~~p~t--~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (336)
T 1lnq_A 44 ESWTVSLYWTFVTIATVGYGDYSPST--PLGMYFTVTLIVLGIGTFAVAVERLLEFLINRE 102 (336)
T ss_dssp CCSSTTHHHHHHHHTTCCCSSCCCCC--SSHHHHHTHHHHTTSTTTTTHHHHHTTTC----
T ss_pred CCHHHHHHHHHHHhhcccCCCCCCCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999986 579999999999999999999999988887764
No 26
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.48 E-value=1.4e-07 Score=92.60 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=50.8
Q ss_pred CchhhhhheeeeccccccCCcccccCCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q psy4009 137 HSFTSCFLFSVETQHTIGYGAKQVTEECPEA------IFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 199 (391)
Q Consensus 137 ~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g------~~l~~iq~l~Glll~A~~~GivfaK~SRP~~R 199 (391)
-+|.+|+||++.|+|||||||.+|.+. .+ ++++.+.+++|+.+.+.+++.+-..+..-++|
T Consensus 223 ~~~~da~y~~~vTltTvGyGd~~p~t~--~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r 289 (309)
T 3um7_A 223 WSKLEAIYFVIVTLTTVGFGDYVAGAD--PRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRR 289 (309)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCTTCC--TTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CCHHHHHHHHHhheeccccCCCCCCCc--cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999864 34 36899999999999999999877665544443
No 27
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.46 E-value=3.2e-07 Score=89.02 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=46.9
Q ss_pred CchhhhhheeeeccccccCCcccccCCch-----hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4009 137 HSFTSCFLFSVETQHTIGYGAKQVTEECP-----EAIFILCLQSIVGVMIQAFMVGIVF 190 (391)
Q Consensus 137 ~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp-----~g~~l~~iq~l~Glll~A~~~Givf 190 (391)
-+|.+|+||++.|+|||||||..|.+.-- .+++++++-+++|+.+.+.+++.+.
T Consensus 200 ~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~ 258 (280)
T 3ukm_A 200 WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFC 258 (280)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999987521 4689999999999999999888653
No 28
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.45 E-value=9.1e-08 Score=94.00 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=51.3
Q ss_pred CchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy4009 137 HSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSR 195 (391)
Q Consensus 137 ~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SR 195 (391)
-+|.+||||++.|+|||||||++|.+ +.|++++++.+++|+.+.+++++.+-..+.+
T Consensus 114 w~~~~a~yf~~~t~tTvGYGdi~P~T--~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 114 WDLGSAFFFSGTIITTIGYGNVALRT--DAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp CSHHHHHHHHHHHHTSCCCCSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHhhheeeeecccCCCCCCC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999997 6899999999999999999999887666643
No 29
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.37 E-value=1.8e-07 Score=90.68 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=52.8
Q ss_pred CCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q psy4009 136 IHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRP 196 (391)
Q Consensus 136 ~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP 196 (391)
.-+|.+||||++.|+|||||||++|.+ +.|++++++-+++|+.+.+++++.+..++...
T Consensus 91 ~w~~~~a~yf~~~t~tTvGyGd~~P~T--~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~ 149 (280)
T 3ukm_A 91 NWDFTSALFFASTVLSTTGYGHTVPLS--DGGKAFCIIYSVIGIPFTLLFLTAVVQRITVH 149 (280)
T ss_dssp CSSHHHHHHHHHHHHTTCCCCSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhcchhheeeeeeccccCCcCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999999987 68999999999999999999998877766543
No 30
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.02 E-value=1e-05 Score=76.90 Aligned_cols=108 Identities=14% Similarity=0.192 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCcccCCCchhhhhheeeecccccc
Q psy4009 75 LQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIG 154 (391)
Q Consensus 75 l~DlfttLv~~~Wr~~llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~~~~~~pCv~~~~sF~~AF~FSveT~TTIG 154 (391)
++.+..++.. .++.++ .+++..++.+++||.+-+.+- .+.. | .++++|.+|+|+.++|+||.|
T Consensus 134 l~~l~~~l~~-~~~~l~-~~~~~~~~~~~~fa~~g~~~f--~~~~-----------~--~~F~s~~~a~~~~~~~~T~~g 196 (285)
T 3rvy_A 134 MRKIVSALIS-VIPGML-SVIALMTLFFYIFAIMATQLF--GERF-----------P--EWFGTLGESFYTLFQVMTLES 196 (285)
T ss_dssp HHHHHHHHHH-HGGGGH-HHHHHHHHHHHHHHHHHHHHH--TTTC-----------H--HHHSSHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHh--Cccc-----------c--cccCCHHHHHHHHHHHHHhCC
Confidence 4566666654 333333 333334455667775433321 1210 1 358999999999999999999
Q ss_pred CC-ccc-ccCC-chh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q psy4009 155 YG-AKQ-VTEE-CPE-AIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 199 (391)
Q Consensus 155 YG-d~~-Pt~~-Cp~-g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~R 199 (391)
|| |.. |... .+. +.+++++-++.|+++.++++|++...+++.++.
T Consensus 197 ~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~ 245 (285)
T 3rvy_A 197 WSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQK 245 (285)
T ss_dssp CCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 863 6542 223 378899999999999999999999999877654
No 31
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=93.04 E-value=0.36 Score=43.81 Aligned_cols=65 Identities=8% Similarity=0.092 Sum_probs=51.5
Q ss_pred cCCCchhhhhheeeeccccccCCcc-ccc-CCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Q psy4009 134 TSIHSFTSCFLFSVETQHTIGYGAK-QVT-EECPEA-IFILCLQSIVGVMIQAFMVGIVFAKLSRPKK 198 (391)
Q Consensus 134 ~~~~sF~~AF~FSveT~TTIGYGd~-~Pt-~~Cp~g-~~l~~iq~l~Glll~A~~~GivfaK~SRP~~ 198 (391)
.++++|.+|++...++.||-||+|. ++. ...|.+ .+.++.-.+.+.++..+.+|++...+++-++
T Consensus 161 ~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~~~~ 228 (229)
T 4dxw_A 161 SRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVIQKKL 228 (229)
T ss_dssp TTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999985 221 112344 4667777888899999999999999987665
No 32
>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta barrel, cytoplasmic domain, inward rectifier potassium channel, metal transport; 1.80A {Mus musculus} SCOP: b.1.18.16 PDB: 3k6n_A 1u4e_A
Probab=69.19 E-value=1.2 Score=41.11 Aligned_cols=25 Identities=40% Similarity=0.666 Sum_probs=15.2
Q ss_pred ccccCceEeeCCceeEEecCchhhh
Q psy4009 47 RRIRRRVVFKHGDCNVVQENVAKRR 71 (391)
Q Consensus 47 ~~~~~Rlv~K~G~~NV~~~~~~~~~ 71 (391)
||.|+|+|.|+|.|||.....++++
T Consensus 2 ~~~~~~~~~~~g~~~v~~~rfsk~R 26 (207)
T 1n9p_A 2 SKKRQRFVDKNGRCNVQHGNLGSER 26 (207)
T ss_dssp ---CCCSBCTTSCBCEEC-----CC
T ss_pred cchhhhhhhcCCceeeEEeeecCCc
Confidence 5778999999999999988776543
No 33
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=39.18 E-value=19 Score=37.77 Aligned_cols=60 Identities=10% Similarity=0.013 Sum_probs=46.6
Q ss_pred CchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q psy4009 137 HSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 199 (391)
Q Consensus 137 ~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~R 199 (391)
.++.++|||++.+++..| ++..|. ...+++++.+=.++++++.+.-++.+.+-++.|+..
T Consensus 562 ~~~~~~~~~~~~~l~~~g-~~~~p~--~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 621 (823)
T 3kg2_A 562 FGIFNSLWFSLGAFMQQG-ADISPR--SLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMV 621 (823)
T ss_dssp HHHHHHHHHTTTTSCC-------CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHhcC-CCcCCc--chhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 357799999999999888 555555 478999999999999999999999999999876543
No 34
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=22.10 E-value=74 Score=30.78 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=22.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4009 86 QWRWTLLVFALNFLLSWLMFAIVWWLI 112 (391)
Q Consensus 86 ~Wr~~llif~~~yl~~~llFA~ly~li 112 (391)
+|-++++..++.|+++..+||+..|++
T Consensus 32 sW~~IllFYliFY~~La~lF~~~m~v~ 58 (305)
T 2zxe_B 32 SWFKIFLFYLIFYGCLAGIFIGTIQVL 58 (305)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888899999999999865543
No 35
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A
Probab=20.58 E-value=17 Score=33.37 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=16.1
Q ss_pred cccccCceEeeCCceeEEecCchhh
Q psy4009 46 SRRIRRRVVFKHGDCNVVQENVAKR 70 (391)
Q Consensus 46 ~~~~~~Rlv~K~G~~NV~~~~~~~~ 70 (391)
++|+-+|++.|||.||+.+...|++
T Consensus 3 ~~~~~~~~~~~~g~~~~v~~~~pk~ 27 (208)
T 3agw_A 3 HMRKIQRYVRKDGKCNVHHGNVREK 27 (208)
T ss_dssp ----CCCSBCTTSCBCBSTTCCC--
T ss_pred hHHHHHHHHhcCCeeeEEEeccCCc
Confidence 4566778899999999988777654
No 36
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=20.53 E-value=2.1e+02 Score=19.98 Aligned_cols=12 Identities=17% Similarity=0.100 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q psy4009 177 VGVMIQAFMVGI 188 (391)
Q Consensus 177 ~Glll~A~~~Gi 188 (391)
.|+++.+++.+.
T Consensus 18 gGv~~v~ii~~~ 29 (44)
T 2l2t_A 18 GGLFILVIVGLT 29 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
Done!