RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4009
(391 letters)
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 306 bits (784), Expect = e-102
Identities = 146/342 (42%), Positives = 207/342 (60%), Gaps = 56/342 (16%)
Query: 45 SSRRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLM 104
+ R+ R R V K+G CNV N+ + +RY+ D+FTT VD +WR+ LL+F+L FL+SWL+
Sbjct: 2 ARRKCRNRFVKKNGQCNVEFTNMDDKPQRYIADMFTTCVDIRWRYMLLLFSLAFLVSWLL 61
Query: 105 FAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEEC 164
F +++WLI HGDL+ G+ T+ PCV ++ F + FLFS+ETQ TIGYG + VTEEC
Sbjct: 62 FGLIFWLIALIHGDLENPG-GDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEEC 120
Query: 165 PEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSR---------INCL---- 211
P A+F++ +QSIVG +I +FM+G + AK++RPKKR QTLLFS CL
Sbjct: 121 PLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMRDGKLCLMWRV 180
Query: 212 --------------------------------QTSVE-------DKIFFIWPTTIVHKIN 232
Q ++ D+IF + P TI+H+IN
Sbjct: 181 GNLRKSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLVSPITILHEIN 240
Query: 233 PMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKK 292
SPL+ +S D+ + FEIVVILEG++E+T MTTQARSSYL +EILWGHRFE ++ +K
Sbjct: 241 EDSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVLFEEK 300
Query: 293 ETGEHEVNYGLFNNTYEVH-TPLCSAQALDQLLAIHGTTKSN 333
+++V+Y F+ TYEV TP CSA+ L + + +
Sbjct: 301 --NQYKVDYSHFHKTYEVPSTPRCSAKDLVENKFLLSNSLEV 340
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 305 bits (783), Expect = e-102
Identities = 136/330 (41%), Positives = 197/330 (59%), Gaps = 57/330 (17%)
Query: 46 SRRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMF 105
++R +R V K G CNV NV + RYL DIFTTLVD +WR+ LL+F + + ++WL F
Sbjct: 2 AKRKIQRYVRKDGKCNVHHGNV-RETYRYLTDIFTTLVDLKWRFNLLIFVMVYTVTWLFF 60
Query: 106 AIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECP 165
++WWLI Y GD+D ++ + +WTPCVT+++ F S FLFS+ET+ TIGYG + +T++CP
Sbjct: 61 GMIWWLIAYIRGDMD--HIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCP 118
Query: 166 EAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSR---------INCLQTSVE 216
E I +L +QS++G ++ AFMVG +F K+S+PKKR +TL+FS CL V
Sbjct: 119 EGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMRDGKLCLMFRVG 178
Query: 217 D-------------------------------------------KIFFIWPTTIVHKINP 233
D ++F + P I H+IN
Sbjct: 179 DLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQ 238
Query: 234 MSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKE 293
SP + +S A + +E EIVVILEG++E+TGMT QARSSY+ +EILWG+RF +++ +
Sbjct: 239 QSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTLED- 297
Query: 294 TGEHEVNYGLFNNTYEVHTPLCSAQALDQL 323
G +EV+Y F+ TYE TP SA+ L +L
Sbjct: 298 -GFYEVDYNSFHETYETSTPSLSAKELAEL 326
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 271 bits (694), Expect = 3e-89
Identities = 112/331 (33%), Positives = 160/331 (48%), Gaps = 71/331 (21%)
Query: 48 RIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAI 107
+ R+R V K+G CNV N+ RYL D+FTTLVD +WRW + A+ FLL FA
Sbjct: 3 KKRQRFVDKNGRCNVQHGNLGSETSRYLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFAT 62
Query: 108 VWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEA 167
++ L + F F FSVET T+GYG + + A
Sbjct: 63 LYMLGSAPIAN---------------QFPAGFGGAFFFSVETLATVGYGD--MHPQTVYA 105
Query: 168 IFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFS----------------RINCL 211
+I L+ VG+ A G F K+S+PKKR +TL+FS R+ L
Sbjct: 106 HWIATLEIFVGMSSIALATGCAFIKMSQPKKRAETLMFSEHAVISMRDGKLTLMFRVGNL 165
Query: 212 QTSV------------------------------------EDKIFFIWPTTIVHKINPMS 235
+ S D++F + P TI H I+ S
Sbjct: 166 RNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAKS 225
Query: 236 PLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETG 295
P Y LS M E+FE+VVILEG++E+TGMT QAR+SY +E+LWGHRF ++S ++ G
Sbjct: 226 PFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLEE--G 283
Query: 296 EHEVNYGLFNNTYEVHTPLCSAQALDQLLAI 326
+V+Y F+ T+EV TP S + +++L +
Sbjct: 284 FFKVDYSQFHATFEVPTPPYSVKEQEEMLLM 314
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 258 bits (660), Expect = 5e-84
Identities = 66/332 (19%), Positives = 114/332 (34%), Gaps = 67/332 (20%)
Query: 36 YSLYRQTRFSSRRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFA 95
S + + + R G V+ +D++ + W A
Sbjct: 12 DSFAQAASPARKPPRGGRRIWSGTREVIAYG---MPASVWRDLYYWALKVSWPVFFASLA 68
Query: 96 LNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGY 155
F+++ +FA+++ GD S F F FSVET T+GY
Sbjct: 69 ALFVVNNTLFALLYQ-----LGDAP----------IANQSPPGFVGAFFFSVETLATVGY 113
Query: 156 GAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRIN------ 209
G AI L+ VG+ A G+VFA+ +RP+ + + +
Sbjct: 114 GDMHPQTVYAHAIA--TLEIFVGMSGIALSTGLVFARFARPRAKIMFARHAIVRPFNGRM 171
Query: 210 CLQTSVEDK---------------------------------------IFFIWPTTIVHK 230
L + F+ ++H
Sbjct: 172 TLMVRAANARQNVIAEARAKMRLMRREHSSEGYSLMKIHDLKLVRNEHPIFLLGWNMMHV 231
Query: 231 INPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSF 290
I+ SPL+ + + R ++V++EG E+T QAR ++ ++I W HR+ L+S
Sbjct: 232 IDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQVMQARHAWEHDDIRWHHRYVDLMS- 290
Query: 291 KKETGEHEVNYGLFNNTYEVHTPLCSAQALDQ 322
G ++Y FN+T V P + A
Sbjct: 291 -DVDGMTHIDYTRFNDTEPVEPPGAAPDAQAF 321
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 245 bits (626), Expect = 3e-79
Identities = 57/316 (18%), Positives = 113/316 (35%), Gaps = 65/316 (20%)
Query: 43 RFSSRRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSW 102
+ R++ G N+ + + +R +L D + L+ W + + +L++
Sbjct: 4 GMKPPARKPRILNSDGSSNITRLGL--EKRGWLDDHYHDLLTVSWPVFITLITGLYLVTN 61
Query: 103 LMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTE 162
+FA+ + + SFT F FSV+T TIGYG +
Sbjct: 62 ALFALAYLACGDVIEN---------------ARPGSFTDAFFFSVQTMATIGYGK--LIP 104
Query: 163 ECPEAIFILCLQSIVGVMIQAFMVGIVFAKLS--------------RPKKRTQTLLF--- 205
P A ++ L+++ G++ A +++A+ + + TL+
Sbjct: 105 IGPLANTLVTLEALCGMLGLAVAASLIYARFTRPTAGVLFSSRMVISDFEGKPTLMMRLA 164
Query: 206 -SRINCL---------------------------QTSVEDKIFFIWPTTIVHKINPMSPL 237
RI + + F T++H I+ SP+
Sbjct: 165 NLRIEQIIEADVHLVLVRSEISQEGMVFRRFHDLTLTRSRSPIFSLSWTVMHPIDHHSPI 224
Query: 238 YTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEH 297
Y + + E +V+ G E+ AR +Y +EI+WG F + + + G
Sbjct: 225 YGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGGHFVDVFTTLPD-GRR 283
Query: 298 EVNYGLFNNTYEVHTP 313
++ G F+ + H
Sbjct: 284 ALDLGKFHEIAQHHHH 299
>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport,
membrane protein; 17.20A {Mus musculus}
Length = 309
Score = 166 bits (421), Expect = 1e-48
Identities = 78/313 (24%), Positives = 116/313 (37%), Gaps = 73/313 (23%)
Query: 119 LDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVG 178
+ V + + +V G + Q
Sbjct: 1 MGSVRTNRYSIVSSEEDGMKLAT---MAVANGFGNGKSKVHTRQ-----------QCRSR 46
Query: 179 VMIQAFMVGIVFAKLS---RPKKRTQTLLFSR---------INCLQ-------------- 212
+ + + F + + R +TL+FS CL
Sbjct: 47 FVKKDGHCNVQFINVGEKGQRGGRNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEA 106
Query: 213 -----------------------------TSVEDKIFFIWPTTIVHKINPMSPLYTLSAA 243
S D+IF + P TIVH+I+ SPLY LS
Sbjct: 107 HVRAQLLKSRITSEGEYIPLDQIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQ 166
Query: 244 DMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGL 303
D+ FEIVVILEG++E+T MTTQ RSSYL NEILWGHR+E ++ +E ++V+Y
Sbjct: 167 DIDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGHRYEPVLF--EEKHYYKVDYSR 224
Query: 304 FNNTYEVH-TPLCSAQALDQLLAIHGTTKSNADI-SVSPGDAPSNARNLSSDDANNNSNN 361
F+ TYEV TPLCSA+ L + I S V+ + + + ++++
Sbjct: 225 FHKTYEVPNTPLCSARDLAEKKYILSNANSFCYENEVALTSKEEEEDSENGVPESTSTDS 284
Query: 362 KPEGVKQGSELSP 374
P P
Sbjct: 285 PPGIDLHNQASVP 297
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of
KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus
musculus}
Length = 208
Score = 148 bits (376), Expect = 3e-43
Identities = 68/193 (35%), Positives = 91/193 (47%), Gaps = 55/193 (28%)
Query: 183 AFMVGIVFAKLSRPKKRTQTLLFSR---------INCLQ--------------------- 212
++ +KR +TL+FS CL
Sbjct: 10 KKDGHCNVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLQKSHLVEAHVRAQLL 69
Query: 213 ----------------------TSVEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERF 250
S D+IF + P TIVH+I+ SPLY LS D+ F
Sbjct: 70 KSRITSEGEYIPLDQIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADF 129
Query: 251 EIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEV 310
EIVVILEG++E+T MT Q RSSYL NEILWGHR+E ++ +K ++V+Y F+ TYEV
Sbjct: 130 EIVVILEGMVEATAMTKQCRSSYLANEILWGHRYEPVLFEEK--HYYKVDYSRFHKTYEV 187
Query: 311 H-TPLCSAQALDQ 322
TPLCSA+ L +
Sbjct: 188 PNTPLCSARDLAE 200
>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta
barrel, cytoplasmic domain, inward rectifier potassium
channel, metal transport; 1.80A {Mus musculus} SCOP:
b.1.18.16 PDB: 3k6n_A 1u4e_A
Length = 207
Score = 145 bits (366), Expect = 8e-42
Identities = 58/200 (29%), Positives = 91/200 (45%), Gaps = 56/200 (28%)
Query: 179 VMIQAFMVGIVFAKLSRPKKRTQTLLFSR---------INCLQ----------------- 212
+ + + L +R +TL+FS L
Sbjct: 8 FVDKNGRCNVQHGNL--GSERAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIR 65
Query: 213 --------------------------TSVEDKIFFIWPTTIVHKINPMSPLYTLSAADML 246
++ D++F + P TI H I+ SP Y LS M
Sbjct: 66 CKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQ 125
Query: 247 RERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNN 306
E+FE+VVILEG++E+TGMT QAR+SY +E+LWGHRF ++S ++ G +V+Y F+
Sbjct: 126 TEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLEE--GFFKVDYSQFHA 183
Query: 307 TYEVHTPLCSAQALDQLLAI 326
T+EV TP S + +++L +
Sbjct: 184 TFEVPTPPYSVKEQEEMLLM 203
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH;
cytoplasmic assembly, ION channel, beta-barrel,
transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A
3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A
Length = 208
Score = 143 bits (362), Expect = 3e-41
Identities = 65/161 (40%), Positives = 97/161 (60%), Gaps = 7/161 (4%)
Query: 170 ILCLQSIVGVMIQAFMVG-IVFAKLSRPKK----RTQTLLFSRINCLQTSVEDKIFFIWP 224
LCL VG + + +V + AKL + K+ L + IN + +D++F + P
Sbjct: 46 KLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSP 105
Query: 225 TTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRF 284
I H+IN SP + +S A + +E EIVVILEG++E+TGMT QARSSY+ +EILWG+RF
Sbjct: 106 LIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRF 165
Query: 285 ETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLA 325
+++ + G +EV+Y F+ TYE TP SA+ L +L
Sbjct: 166 TPVLTLED--GFYEVDYNSFHETYETSTPSLSAKELAELAN 204
>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1,
IRK1, inwardly rectifying K channel, rectification,
allergen; 2.41A {Mus musculus}
Length = 270
Score = 145 bits (367), Expect = 3e-41
Identities = 74/240 (30%), Positives = 105/240 (43%), Gaps = 56/240 (23%)
Query: 189 VFAKLSRPKKRTQTLLFSR---------INCLQ--------------------------- 212
++ +KR +TL+FS CL
Sbjct: 21 NVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITS 80
Query: 213 ----------------TSVEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVIL 256
S D+IF + P TIVH+I+ SPLY LS D+ FEIVVIL
Sbjct: 81 EGEYIPLDQIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVIL 140
Query: 257 EGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVH-TPLC 315
EG++E+T MTTQ RSSYL NEILWGHR+E ++ +K ++V+Y F+ TYEV TPLC
Sbjct: 141 EGMVEATAMTTQCRSSYLANEILWGHRYEPVLFEEK--HYYKVDYSRFHKTYEVPNTPLC 198
Query: 316 SAQALDQLLAIHGTTKSNADI-SVSPGDAPSNARNLSSDDANNNSNNKPEGVKQGSELSP 374
SA+ L + I S V+ + + + ++++ P P
Sbjct: 199 SARDLAEKKYILSNANSFCYENEVALTSKEEEEDSENGVPESTSTDSPPGIDLHNQASVP 258
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 6e-05
Identities = 58/349 (16%), Positives = 96/349 (27%), Gaps = 158/349 (45%)
Query: 30 SQTK-LVYSLYRQTRFSSRRIRRRVVFKHGDC-----------NVVQEN----------- 66
SQ + + LY+ +S+ + V+ D ++V N
Sbjct: 1626 SQEQGMGMDLYK----TSKAAQD--VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 67 VAKR-RRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLG 125
KR R Y IF T+VD + + + +N + F + ++
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF----------RSEKGLLSA- 1728
Query: 126 NATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFM 185
TQ T Q P A+ ++ + + +
Sbjct: 1729 -----------------------TQFT------Q-----P-ALTLMEK-AAFEDLKSKGL 1752
Query: 186 V--GIVFAKLSRPKKRTQTL-----LFSRINCLQTSVEDKIFFIWPTTIVHKINPMSPLY 238
+ FA S L L S + + S+E
Sbjct: 1753 IPADATFAGHS--------LGEYAALASLADVM--SIES--------------------- 1781
Query: 239 TLSAADMLRERFEIVVILEGVIESTGMTTQ--------ARSSY-----LPNEILWGHRFE 285
+++ R GMT Q RS+Y P + E
Sbjct: 1782 ---LVEVVFYR--------------GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 286 TLVSF----KKETGEH-E-VNYGLFNNTYEVHTPLCS--AQALDQLLAI 326
L K TG E VNY + N Y V + +ALD + +
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVENQQY-V----AAGDLRALDTVTNV 1868
Score = 38.5 bits (89), Expect = 0.004
Identities = 58/370 (15%), Positives = 114/370 (30%), Gaps = 122/370 (32%)
Query: 35 VYSLYRQ-------------TRFSSRRIRRRVVFKHGDCNVVQ--ENVAKRR-RRYLQDI 78
+Y Y + + VF G N+++ EN + + YL I
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-LNILEWLENPSNTPDKDYLLSI 234
Query: 79 FTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSI-- 136
+ L ++ + + L+ +T G+L G T +
Sbjct: 235 PISCP------------LIGVIQLAHYVVTAKLLGFTPGELRSYLKGA---TGHSQGLVT 279
Query: 137 ----------HSFTSC------FLFSVETQHTIGYGAKQVTEEC--PEAIFILCLQSIVG 178
SF LF IG + P +I L++ G
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFF------IGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 179 VMIQAFMVGIVFAKLSRPKKRTQTLLFSRINCLQTSV--EDKIF---FIWPTTIVHKI-- 231
V + M+ I + L++ + + +N + + ++ +V +
Sbjct: 334 VP--SPMLSI--SNLTQEQ------VQDYVNKTNSHLPAGKQVEISLVNGAKNLV--VSG 381
Query: 232 NPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETL-VS- 289
P S LY L+ L +G+ Q+R + ++ + +RF L V+
Sbjct: 382 PPQS-LYGLNLT------------LRKAKAPSGL-DQSRIPFSERKLKFSNRF--LPVAS 425
Query: 290 -FKKETGEHEVNYGLFNNTYEVHTPL--CSAQALDQLLAIHGTTKSNADISV---SPGDA 343
F H+ L ++ +++ L + + + DI + D
Sbjct: 426 PF--------------------HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 344 PSNARNLSSD 353
S+ R LS
Sbjct: 466 -SDLRVLSGS 474
Score = 31.2 bits (70), Expect = 0.69
Identities = 39/288 (13%), Positives = 82/288 (28%), Gaps = 107/288 (37%)
Query: 152 TIGYGAKQVTEECPEAIFILCLQ-----------------------SIVGVMIQAFMVGI 188
T+ +G+ + P A F + Q + ++ + F+ G
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK-FL-GY 67
Query: 189 VFAKLSRPKKRTQTLLFSRINCLQTSVEDKIF---FIWPT---TIVHKINPMSPLYTLSA 242
V + L P K Q L + + F ++ + K+ + +
Sbjct: 68 V-SSLVEPSKVGQFD-----QVLNLCLTE--FENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 243 ADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYG 302
++++ ++ + + +S L F + G ++
Sbjct: 120 KELIKNYITARIMAKRPF------DKKSNSAL---------FRAV-----GEGNAQL-VA 158
Query: 303 LF----NN---------TYEVHTPLC------SAQALDQLLAIHGTTKS----NADISV- 338
+F N Y+ + L SA+ L +L+ + +I
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 339 --SPGDAPSNARNLSSDDANNNSNNKPEGVKQGSELS-PGNGSCVVQL 383
+P + P L S +S P G V+QL
Sbjct: 219 LENPSNTPDKD-YLLS-----------------IPISCPLIG--VIQL 246
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 32.4 bits (74), Expect = 0.061
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 134 TSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKL 193
++ S+ +SVET T+GYG E + G+ + A + +
Sbjct: 36 AALISYPDAIWWSVETATTVGYG--DRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDF 93
Query: 194 SRPKKRTQ 201
R ++ +
Sbjct: 94 VRREEERR 101
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 31.8 bits (72), Expect = 0.20
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 134 TSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKL 193
+ ++ +SVET T+GYG + + + + G+ + +
Sbjct: 63 AQLITYPRALWWSVETATTVGYG--DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWF 120
Query: 194 SRPKKRTQ 201
+++ Q
Sbjct: 121 VGQEQQQQ 128
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 31.1 bits (70), Expect = 0.31
Identities = 19/153 (12%), Positives = 38/153 (24%), Gaps = 33/153 (21%)
Query: 72 RRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTP 131
+R L+ W+ L +++ V
Sbjct: 12 KRMLKACLR-----AWKDKEFQVLFVLTFLTLTSGTIFYSTVEGL--------------- 51
Query: 132 CVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGV-----MIQAFMV 186
FSV T T+G G + + L +G+ I V
Sbjct: 52 ------RPLDALYFSVVTLTTVGDG--NFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAV 103
Query: 187 GIVFAKLSRPKKRTQTLLFSRINCLQTSVEDKI 219
+ + +K+ + ++E K+
Sbjct: 104 NVQLPSILSNRKKETDAYRLEVMEKLEAIEKKL 136
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 32.0 bits (73), Expect = 0.34
Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 28/121 (23%)
Query: 73 RYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPC 132
++ ++ LL+ + F +
Sbjct: 6 EIIRKHLPRVLKVPATRILLLVLAVIIYGTAGFHFI------------------------ 41
Query: 133 VTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAK 192
S+T ++ T T+GYG + P ++ ++G+ A V +
Sbjct: 42 --EGESWTVSLYWTFVTIATVGYGD--YSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEF 97
Query: 193 L 193
L
Sbjct: 98 L 98
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 31.7 bits (72), Expect = 0.36
Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 14/132 (10%)
Query: 137 HSFTS---CFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKL 193
F S ++V T T GYG + + + G+ I GI+
Sbjct: 157 EKFGSIPQAMWWAVVTLSTTGYG--DTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGF 214
Query: 194 SRPKKRTQTLLFSRINCLQTSVEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFE-- 251
+ +R + Q +F ++ +I T+ A ++ E
Sbjct: 215 YQEVRRGD-----FVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPG 269
Query: 252 --IVVILEGVIE 261
+ ++EG +
Sbjct: 270 DRMFFVVEGSVS 281
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 30.2 bits (68), Expect = 0.46
Identities = 9/76 (11%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 134 TSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKL 193
+ ++ +SVET T+GYG + + + + G+ + +
Sbjct: 36 AQLITYPRALWWSVETATTVGYG--DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWF 93
Query: 194 SRPKKRTQTLLFSRIN 209
++ +
Sbjct: 94 VGREQERRGHFVRHSE 109
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 28.9 bits (65), Expect = 0.64
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 137 HSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKL 193
S+T ++ T T+GYG + P ++ C ++G+ A V + L
Sbjct: 27 ESWTVSLYWTFVTIATVGYG--DYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 29.7 bits (67), Expect = 0.68
Identities = 6/68 (8%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 134 TSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKL 193
+ ++ ++ ET T+ YG + + + + G+ + +
Sbjct: 57 AQLITYPRALWWACETATTVAYG--DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWF 114
Query: 194 SRPKKRTQ 201
++ +
Sbjct: 115 VGREQERR 122
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.84
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 11/33 (33%)
Query: 318 QALDQLLAIHGTTKSNADISVSPGDAPS---NA 347
QAL +L + K A AP+ A
Sbjct: 20 QALKKL---QASLKLYA-----DDSAPALAIKA 44
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 29.4 bits (66), Expect = 1.1
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 134 TSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKL 193
++ S+ +SVET T+GYG + + + + G+ + V
Sbjct: 80 AALISYPDALWWSVETATTVGYG--DLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWF 137
Query: 194 SRPKKRTQ 201
++ +
Sbjct: 138 VGREQERR 145
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
paralog, translation, lysyl- synthetase, lysyladenylate
analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
3g1z_A*
Length = 345
Score = 29.5 bits (67), Expect = 1.9
Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 23/60 (38%)
Query: 201 QTLLFSRINCLQTSVEDKIFFIWPTTIVH---------KINPMSPLYTLSAADMLRERFE 251
LLF+ VE I PT + H +I+ ERFE
Sbjct: 212 LQLLFT------FGVEPNIGKEKPTFVYHFPASQASLAQISTEDHRVA--------ERFE 257
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET:
3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Length = 413
Score = 29.2 bits (65), Expect = 2.6
Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 11/80 (13%)
Query: 270 RSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGT 329
R YL EIL + + P + +A ++ + G
Sbjct: 90 RYMYLTEEILKKNPDVCAFVEVPSLDAR-------QAMLAMEVPRLAKEAAEKAIQEWGQ 142
Query: 330 TKSNADI----SVSPGDAPS 345
+KS S + D P
Sbjct: 143 SKSGITHLIFCSTTTPDLPG 162
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase,
phosphorylation, transferase-antibiotic COMP; HET: ANP
B31; 2.10A {Enterococcus faecalis} PDB: 2b0q_A* 1l8t_A*
3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Length = 263
Score = 28.5 bits (63), Expect = 4.2
Identities = 10/56 (17%), Positives = 17/56 (30%)
Query: 69 KRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNL 124
L + + W L +L +V++HGDL N+
Sbjct: 140 AELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNI 195
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 28.1 bits (62), Expect = 6.0
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 137 HSFTS---CFLFSVETQHTIGYGAKQVTEECPEAI---FILCLQSIVGVMIQAFMVGIVF 190
F S F ++V + T+GYG + P I + L +I GV+ A V ++
Sbjct: 371 SQFPSIPDAFWWAVVSMTTVGYG-----DMVPTTIGGKIVGSLCAIAGVLTIALPVPVIV 425
Query: 191 AKLSRPKKRTQ 201
+ + R
Sbjct: 426 SNFNYFYHRET 436
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 26.3 bits (58), Expect = 6.2
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 137 HSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRP 196
FSV T T+GYG + + L +G+ + + + + P
Sbjct: 31 LRPIDALYFSVVTLTTVGYG--DFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88
Query: 197 K 197
Sbjct: 89 S 89
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition,
actin dynamics, contractIle protein; 1.80A {Mus
musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Length = 112
Score = 26.5 bits (58), Expect = 7.1
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 28 SSSQTKLVYSLYRQTRFSSRRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQW 87
S +Y T ++ R+ R + H VV + +Y Q T QW
Sbjct: 27 GGSTGFSRVHIYHHTGNNTFRVVGRKIQDH---QVVINCAIPKGLKYNQ---ATQTFHQW 80
Query: 88 RWTLLVFALNF 98
R V+ LNF
Sbjct: 81 RDARQVYGLNF 91
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 27.1 bits (61), Expect = 7.5
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 144 LFSVETQHTIGYGAKQVTEECPEA--IFIL 171
+E Q GA QV + PE IF+
Sbjct: 103 FLEIEVQ-----GAMQVRKAMPEGIFIFLT 127
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 26.4 bits (58), Expect = 8.6
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 137 HSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRP 196
FSV T T+G G + + L +G+ + + + + P
Sbjct: 48 LRPIDALYFSVVTLTTVGAG--NFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105
Query: 197 K 197
Sbjct: 106 S 106
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 27.1 bits (61), Expect = 9.2
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 144 LFSVETQHTIGYGAKQVTEECPEA--IFIL 171
L V+ GA+ + + PEA +F+
Sbjct: 116 LIEVDLA-----GARAIKKTMPEAVTVFLA 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.410
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,715,848
Number of extensions: 325994
Number of successful extensions: 609
Number of sequences better than 10.0: 1
Number of HSP's gapped: 571
Number of HSP's successfully gapped: 51
Length of query: 391
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 296
Effective length of database: 4,049,298
Effective search space: 1198592208
Effective search space used: 1198592208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)