RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4009
(391 letters)
>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 202
Score = 143 bits (363), Expect = 9e-42
Identities = 59/191 (30%), Positives = 88/191 (46%), Gaps = 56/191 (29%)
Query: 188 IVFAKLSRPKKRTQTLLFSR---------INCLQTSV----------------------- 215
+ L +R +TL+FS L V
Sbjct: 13 VQHGNLG--SERAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQT 70
Query: 216 --------------------EDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVI 255
D++F + P TI H I+ SP Y LS M E+FE+VVI
Sbjct: 71 PEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVI 130
Query: 256 LEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLC 315
LEG++E+TGMT QAR+SY +E+LWGHRF ++S ++ G +V+Y F+ T+EV TP
Sbjct: 131 LEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLEE--GFFKVDYSQFHATFEVPTPPY 188
Query: 316 SAQALDQLLAI 326
S + +++L +
Sbjct: 189 SVKEQEEMLLM 199
Score = 28.7 bits (64), Expect = 0.93
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 50 RRRVVFKHGDCNVVQENVAKRRRRYLQ 76
R+R V K+G CNV N+ R L
Sbjct: 1 RQRFVDKNGRCNVQHGNLGSERAETLM 27
>d1p7ba1 b.1.18.16 (A:152-309) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 158
Score = 130 bits (328), Expect = 3e-37
Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Query: 170 ILCLQSIVGVMIQAFMVGI-VFAKLSRPKKRTQTLLFSRINCLQTSVEDKIFFIWPTTIV 228
+ L Q + +L R + ++ +I+ L+ + F+ ++
Sbjct: 19 RMTLMVRAANARQNVIAEARAKMRLMRREHSSEGYSLMKIHDLKLVRNEHPIFLLGWNMM 78
Query: 229 HKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLV 288
H I+ SPL+ + + R ++V++EG E+T QAR ++ ++I W HR+ L+
Sbjct: 79 HVIDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQVMQARHAWEHDDIRWHHRYVDLM 138
Query: 289 SFKKETGEHEVNYGLFNNTYEV 310
S G ++Y FN+T V
Sbjct: 139 S--DVDGMTHIDYTRFNDTEPV 158
>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 161
Score = 129 bits (325), Expect = 7e-37
Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 2/144 (1%)
Query: 170 ILCLQSIVGVMIQAFMVGI-VFAKLSRPKKRTQTLLFSRINCLQTSVEDKIFFIWPTTIV 228
L + + ++ V L R + + ++F R + L + F T++
Sbjct: 18 KPTLMMRLANLRIEQIIEADVHLVLVRSEISQEGMVFRRFHDLTLTRSRSPIFSLSWTVM 77
Query: 229 HKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLV 288
H I+ SP+Y + + E +V+ G E+ AR +Y +EI+WG F +
Sbjct: 78 HPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGGHFVDVF 137
Query: 289 SFKKETGEHEVNYGLFNNTYEVHT 312
+ + G ++ G F+ + H
Sbjct: 138 TTLPD-GRRALDLGKFHEIAQHHH 160
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 94.7 bits (235), Expect = 2e-24
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 70 RRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATW 129
+R +L D + L+ W + + +L++ +FA+ +
Sbjct: 7 EKRGWLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLAC---------------GD 51
Query: 130 TPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIV 189
SFT F FSV+T TIGYG ++ P A ++ L+++ G++ A ++
Sbjct: 52 VIENARPGSFTDAFFFSVQTMATIGYG--KLIPIGPLANTLVTLEALCGMLGLAVAASLI 109
Query: 190 FAKLSRP 196
+A+ +RP
Sbjct: 110 YARFTRP 116
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 92.0 bits (228), Expect = 2e-23
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 17/124 (13%)
Query: 72 RRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTP 131
+D++ + W A F+++ +FA+++ L +
Sbjct: 10 ASVWRDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIAN------------- 56
Query: 132 CVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFA 191
S F F FSVET T+GY + + A I L+ VG+ A G+VFA
Sbjct: 57 --QSPPGFVGAFFFSVETLATVGY--GDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFA 112
Query: 192 KLSR 195
+ +R
Sbjct: 113 RFAR 116
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 27.4 bits (61), Expect = 0.67
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 137 HSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKL 193
S+T ++ T T+GYG + P ++ ++G+ A V + L
Sbjct: 26 ESWTVSLYWTFVTIATVGYG--DYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80
>d1vpya_ c.1.32.1 (A:) Hypothetical protein EF0366 {Enterococcus
faecalis [TaxId: 1351]}
Length = 269
Score = 26.9 bits (59), Expect = 3.7
Identities = 5/26 (19%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 301 YGLFNNTYEVHTPLCSAQALDQLLAI 326
+FNN +A + ++L +
Sbjct: 244 GVIFNNNSGGDAAE-NALQMQKVLNL 268
>d1vpqa_ c.1.32.1 (A:) Hypothetical protein TM1631 {Thermotoga
maritima [TaxId: 2336]}
Length = 260
Score = 26.5 bits (58), Expect = 4.7
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 301 YGLFNNTYEVHTPLCSAQALDQLL 324
Y FNN Y+ + +A ++L
Sbjct: 236 YVFFNNCYKGQAAI-NALQFKKML 258
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.410
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,400,885
Number of extensions: 62343
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 11
Length of query: 391
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 304
Effective length of database: 1,213,086
Effective search space: 368778144
Effective search space used: 368778144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)