BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy401
(326 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NUC2|CSN6_XENLA COP9 signalosome complex subunit 6 OS=Xenopus laevis GN=cops6 PE=2
SV=1
Length = 318
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 199/318 (62%), Positives = 256/318 (80%), Gaps = 1/318 (0%)
Query: 8 APTATSSEVMDVDDTPAGKSVMAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVI 67
A A++ M+VD A SVMA+GVTGS+ V+LHPLVI+NIS+H+ R R+QEG+P+QVI
Sbjct: 2 AAAASNGNGMEVD-VAALPSVMAQGVTGSVTVALHPLVILNISDHWIRMRSQEGRPMQVI 60
Query: 68 GALIGIQVGRKLEIKNSFELVYNIIEDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGD 127
GALIG Q GR +E+ NSFEL+ I ++++ IN++YY KEEQFKQVF D++FLGWYTTG
Sbjct: 61 GALIGKQEGRNIEVMNSFELLSQINDEKITINKEYYYTKEEQFKQVFKDMEFLGWYTTGG 120
Query: 128 TVNELDIKVHKQICEINESPIFLKLNPHPIHSNLPVSVYESIIDLVGGEATMLFIELPYT 187
T + DI VHKQ+CEI ESP+FLKLNP H++LPVSVYES+ID+V GEATML EL YT
Sbjct: 121 TPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVYESVIDIVNGEATMLLAELSYT 180
Query: 188 IITEEAERMGVDHVARMSNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGT 247
+ TEEAER+GVDHVARM+ SGE+S VAEHL AQ++AIKMLH R++++L+Y++ E G
Sbjct: 181 LATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVRLILEYVRAAEGGE 240
Query: 248 LPVNHDILRELNALRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVNKF 307
+P NH+ILRE +AL H LPVL FKTDFY QCNDV L++YLGTITK CN +NQFVNKF
Sbjct: 241 VPFNHEILREASALCHCLPVLSTDKFKTDFYDQCNDVGLMSYLGTITKTCNTMNQFVNKF 300
Query: 308 NVLFDKQMLGRKLRGILY 325
N+L+D+Q +GR++RG+ +
Sbjct: 301 NILYDRQGIGRRMRGLFF 318
>sp|Q07G98|CSN6_XENTR COP9 signalosome complex subunit 6 OS=Xenopus tropicalis GN=cops6
PE=2 SV=1
Length = 319
Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust.
Identities = 195/305 (63%), Positives = 249/305 (81%)
Query: 21 DTPAGKSVMAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLE 80
D A +VMA+GVTGS+ V+LHPLVI+NIS+H+ R R+QEG+PVQVIGALIG Q GR +E
Sbjct: 15 DVAAFPTVMAQGVTGSVTVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIE 74
Query: 81 IKNSFELVYNIIEDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQI 140
+ NSFEL+ I E+++ IN++YY KEEQFKQVF D++FLGWYTTG T + DI VHKQ+
Sbjct: 75 VMNSFELLSQINEEKITINKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSDIHVHKQV 134
Query: 141 CEINESPIFLKLNPHPIHSNLPVSVYESIIDLVGGEATMLFIELPYTIITEEAERMGVDH 200
CEI ESP+FLKLNP H++LPVSVYES+ID+V GEATML EL YT+ TEEAER+GVDH
Sbjct: 135 CEIIESPLFLKLNPMTKHTDLPVSVYESVIDIVNGEATMLLAELSYTLATEEAERIGVDH 194
Query: 201 VARMSNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNA 260
VARM+ SGE+S VAEHL AQ++AIKMLH R++++L+Y++ E+G +P NH+ILRE +A
Sbjct: 195 VARMTATGSGENSTVAEHLIAQHSAIKMLHSRVRLILEYVRAAEAGEVPFNHEILREASA 254
Query: 261 LRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVNKFNVLFDKQMLGRKL 320
L H LPVL FK DFY QCNDV L++YLGTITK CN +NQFVNKFN+L+D+Q +GR++
Sbjct: 255 LCHCLPVLSTDKFKMDFYDQCNDVGLMSYLGTITKTCNTMNQFVNKFNILYDRQGIGRRM 314
Query: 321 RGILY 325
RG+ +
Sbjct: 315 RGLFF 319
>sp|A6QQ21|CSN6_BOVIN COP9 signalosome complex subunit 6 OS=Bos taurus GN=COPS6 PE=2 SV=1
Length = 324
Score = 424 bits (1089), Expect = e-118, Method: Compositional matrix adjust.
Identities = 196/305 (64%), Positives = 248/305 (81%)
Query: 21 DTPAGKSVMAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLE 80
D SVMA GVTGS+ V+LHPLVI+NIS+H+ R R+QEG+P+QVIGALIG Q GR +E
Sbjct: 20 DAAVVPSVMASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIE 79
Query: 81 IKNSFELVYNIIEDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQI 140
+ NSFEL+ + +E+++II+++YY KEEQFKQVF +LDFLGWYTTG + DI VHKQ+
Sbjct: 80 VMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELDFLGWYTTGGPPDPSDIHVHKQV 139
Query: 141 CEINESPIFLKLNPHPIHSNLPVSVYESIIDLVGGEATMLFIELPYTIITEEAERMGVDH 200
CEI ESP+FLKLNP H++LPVSV+ES+ID++ GEATMLF EL YT+ TEEAER+GVDH
Sbjct: 140 CEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVDH 199
Query: 201 VARMSNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNA 260
VARM+ SGE+S VAEHL AQ++AIKMLH R+K++L+Y+K E+G +P NH+ILRE A
Sbjct: 200 VARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYA 259
Query: 261 LRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVNKFNVLFDKQMLGRKL 320
L H LPVL FKTDFY QCNDV L+ YLGTITK CN +NQFVNKFNVL+D+Q +GR++
Sbjct: 260 LCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQGIGRRM 319
Query: 321 RGILY 325
RG+ +
Sbjct: 320 RGLFF 324
>sp|Q5REY0|CSN6_PONAB COP9 signalosome complex subunit 6 OS=Pongo abelii GN=COPS6 PE=2
SV=1
Length = 328
Score = 424 bits (1089), Expect = e-118, Method: Compositional matrix adjust.
Identities = 199/313 (63%), Positives = 252/313 (80%), Gaps = 1/313 (0%)
Query: 13 SSEVMDVDDTPAGKSVMAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIG 72
S M+VD SVMA GVTGS+ V+LHPLVI+NIS+H+ R R+QEG+PVQVIGALIG
Sbjct: 17 GSSGMEVDAAVV-PSVMASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIG 75
Query: 73 IQVGRKLEIKNSFELVYNIIEDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNEL 132
Q GR +E+ NSFEL+ + +E+++II+++YY KEEQFKQVF +L+FLGWYTTG +
Sbjct: 76 KQEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPS 135
Query: 133 DIKVHKQICEINESPIFLKLNPHPIHSNLPVSVYESIIDLVGGEATMLFIELPYTIITEE 192
DI VHKQ+CEI ESP+FLKLNP H++LPVSV+ES+ID++ GEATMLF EL YT+ TEE
Sbjct: 136 DIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGEATMLFAELTYTLATEE 195
Query: 193 AERMGVDHVARMSNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNH 252
AER+GVDHVARM+ SGE+S VAEHL AQ++AIKMLH R+K++L+Y+K E+G +P NH
Sbjct: 196 AERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNH 255
Query: 253 DILRELNALRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVNKFNVLFD 312
+ILRE AL H LPVL FKTDFY QCNDV L+ YLGTITK CN +NQFVNKFNVL+D
Sbjct: 256 EILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYD 315
Query: 313 KQMLGRKLRGILY 325
+Q +GR++RG+ +
Sbjct: 316 RQGIGRRMRGLFF 328
>sp|O88545|CSN6_MOUSE COP9 signalosome complex subunit 6 OS=Mus musculus GN=Cops6 PE=1
SV=1
Length = 324
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 198/309 (64%), Positives = 252/309 (81%), Gaps = 2/309 (0%)
Query: 17 MDVDDTPAGKSVMAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVG 76
M+VD A SVMA GVTGS+ V+LHPLVI+NIS+H+ R R+QEG+P+QVIGALIG Q G
Sbjct: 18 MEVD--AAVPSVMASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEG 75
Query: 77 RKLEIKNSFELVYNIIEDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKV 136
R +E+ NSFEL+ + +E+++II+++YY KEEQFKQVF +L+FLGWYTTG + DI V
Sbjct: 76 RNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHV 135
Query: 137 HKQICEINESPIFLKLNPHPIHSNLPVSVYESIIDLVGGEATMLFIELPYTIITEEAERM 196
HKQ+CEI ESP+FLKLNP H++LPVSV+ES+ID++ GEATMLF EL YT+ TEEAER+
Sbjct: 136 HKQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERI 195
Query: 197 GVDHVARMSNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILR 256
GVDHVARM+ SGE+S VAEHL AQ++AIKMLH R+K++L+Y+K E+G +P NH+ILR
Sbjct: 196 GVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILR 255
Query: 257 ELNALRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVNKFNVLFDKQML 316
E AL H LPVL FKTDFY QCNDV L+ YLGTITK CN +NQFVNKFNVL+D+Q +
Sbjct: 256 EAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQGI 315
Query: 317 GRKLRGILY 325
GR++RG+ +
Sbjct: 316 GRRMRGLFF 324
>sp|Q7L5N1|CSN6_HUMAN COP9 signalosome complex subunit 6 OS=Homo sapiens GN=COPS6 PE=1
SV=1
Length = 327
Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/313 (63%), Positives = 252/313 (80%), Gaps = 1/313 (0%)
Query: 13 SSEVMDVDDTPAGKSVMAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIG 72
S M+VD SVMA GVTGS+ V+LHPLVI+NIS+H+ R R+QEG+PVQVIGALIG
Sbjct: 16 GSSGMEVDAAVV-PSVMACGVTGSVSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIG 74
Query: 73 IQVGRKLEIKNSFELVYNIIEDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNEL 132
Q GR +E+ NSFEL+ + +E+++II+++YY KEEQFKQVF +L+FLGWYTTG +
Sbjct: 75 KQEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPS 134
Query: 133 DIKVHKQICEINESPIFLKLNPHPIHSNLPVSVYESIIDLVGGEATMLFIELPYTIITEE 192
DI VHKQ+CEI ESP+FLKLNP H++LPVSV+ES+ID++ GEATMLF EL YT+ TEE
Sbjct: 135 DIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGEATMLFAELTYTLATEE 194
Query: 193 AERMGVDHVARMSNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNH 252
AER+GVDHVARM+ SGE+S VAEHL AQ++AIKMLH R+K++L+Y+K E+G +P NH
Sbjct: 195 AERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNH 254
Query: 253 DILRELNALRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVNKFNVLFD 312
+ILRE AL H LPVL FKTDFY QCNDV L+ YLGTITK CN +NQFVNKFNVL+D
Sbjct: 255 EILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYD 314
Query: 313 KQMLGRKLRGILY 325
+Q +GR++RG+ +
Sbjct: 315 RQGIGRRMRGLFF 327
>sp|A7TX81|CSN6_PIG COP9 signalosome complex subunit 6 OS=Sus scrofa GN=COPS6 PE=2 SV=1
Length = 323
Score = 422 bits (1084), Expect = e-117, Method: Compositional matrix adjust.
Identities = 198/313 (63%), Positives = 252/313 (80%), Gaps = 1/313 (0%)
Query: 13 SSEVMDVDDTPAGKSVMAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIG 72
S M+VD SVMA GVTGS+ V+LHPLVI+NIS+H+ R R+QEG+P+QVIGALIG
Sbjct: 12 GSSGMEVDAAVV-PSVMASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIG 70
Query: 73 IQVGRKLEIKNSFELVYNIIEDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNEL 132
Q GR +E+ NSFEL+ + +E+++II+++YY KEEQFKQVF +L+FLGWYTTG +
Sbjct: 71 KQEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPS 130
Query: 133 DIKVHKQICEINESPIFLKLNPHPIHSNLPVSVYESIIDLVGGEATMLFIELPYTIITEE 192
DI VHKQ+CEI ESP+FLKLNP H++LPVSV+ES+ID++ GEATMLF EL YT+ TEE
Sbjct: 131 DIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGEATMLFAELTYTLATEE 190
Query: 193 AERMGVDHVARMSNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNH 252
AER+GVDHVARM+ SGE+S VAEHL AQ++AIKMLH R+K++L+Y+K E+G +P NH
Sbjct: 191 AERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNH 250
Query: 253 DILRELNALRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVNKFNVLFD 312
+ILRE AL H LPVL FKTDFY QCNDV L+ YLGTITK CN +NQFVNKFNVL+D
Sbjct: 251 EILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYD 310
Query: 313 KQMLGRKLRGILY 325
+Q +GR++RG+ +
Sbjct: 311 RQGIGRRMRGLFF 323
>sp|Q9VCY3|CSN6_DROME COP9 signalosome complex subunit 6 OS=Drosophila melanogaster
GN=CSN6 PE=1 SV=1
Length = 341
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 191/309 (61%), Positives = 242/309 (78%), Gaps = 1/309 (0%)
Query: 18 DVDDTPAGKSVMAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGR 77
D + P G + A G +GS+ +SLHPLVIMNISEH+TR RAQ G+P QV GALIG Q GR
Sbjct: 33 DQNPQPQGNIMAAAGTSGSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGR 92
Query: 78 KLEIKNSFELVYNIIEDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVH 137
+EI NSFEL ++I DE +IN+DYY KE+Q+KQVF DLDF+GWYTTGD DIK+
Sbjct: 93 NIEIMNSFELKTDVIGDETVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQ 152
Query: 138 KQICEINESPIFLKLNPHPIH-SNLPVSVYESIIDLVGGEATMLFIELPYTIITEEAERM 196
+QI INE PI L+LNP +LP+ ++ES+IDLV GEATMLF+ L YT+ TEEAER+
Sbjct: 153 RQIAAINECPIMLQLNPLSRSVDHLPLKLFESLIDLVDGEATMLFVPLTYTLATEEAERI 212
Query: 197 GVDHVARMSNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILR 256
GVDHVARM++N+SGE S+VAEHL AQ +AIKML+ RIKI+L Y+++VE+G L N +ILR
Sbjct: 213 GVDHVARMTSNESGEKSVVAEHLVAQDSAIKMLNTRIKIVLQYIRDVEAGKLRANQEILR 272
Query: 257 ELNALRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVNKFNVLFDKQML 316
E AL HRLPV+ PAF+ +FYTQCNDV LI+YLGT+TKGCND++ FVNKFN+L+D+Q
Sbjct: 273 EAYALCHRLPVMQVPAFQEEFYTQCNDVGLISYLGTLTKGCNDMHHFVNKFNMLYDRQGS 332
Query: 317 GRKLRGILY 325
R++RG+ Y
Sbjct: 333 ARRMRGLYY 341
>sp|Q54C92|CSN6_DICDI COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum
GN=csn6 PE=1 SV=1
Length = 309
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/299 (41%), Positives = 194/299 (64%), Gaps = 8/299 (2%)
Query: 24 AGKSVMAKGVTGS-IHVSLHPLVIMNISEHYTRRRAQEG--KPVQVIGALIGIQVGRKLE 80
A K V+ K S + V LHPLV++NIS+H+TR + Q +VIG ++G+Q GR +E
Sbjct: 12 ANKLVLEKSANSSGLEVDLHPLVLINISDHFTRTKVQSNYQDNCRVIGVILGVQNGRNVE 71
Query: 81 IKNSFELVYNIIEDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQI 140
I NSFE+VY ++ +++++ +Y ++++Q+F D LGWY+TG V++ DI +HKQI
Sbjct: 72 ICNSFEMVYATVDKQLVLDIEYL---RKKYEQLFPLYDLLGWYSTGSQVSKDDILLHKQI 128
Query: 141 CEINESPIFLKLNP-HPIHSNLPVSVYESIIDLVGGEATMLFIELPYTIITEEAERMGVD 199
E NESP++L L+ P +LPV +YES + +V E T +F++ PY I T EAER+GV+
Sbjct: 129 SEHNESPLYLMLDTDSPKSKDLPVIIYESELHIVNDEPTTIFVKTPYKIQTGEAERIGVN 188
Query: 200 HVARMSNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELN 259
H+A+++ + S E S + HL +NAI ML++R+K L DYL+ V+ LP +ILR+ +
Sbjct: 189 HIAKVTPSGS-EGSGLTSHLFTMHNAISMLNIRVKALSDYLQAVKEKRLPYEQNILRKAS 247
Query: 260 ALRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVNKFNVLFDKQMLGR 318
+L ++LP +D FK + + NDV L+TYL +ITK LN ++K+ V +KQ R
Sbjct: 248 SLCNQLPTIDTHDFKKSYLQEYNDVLLVTYLASITKTSASLNDTIDKYLVSNEKQSKRR 306
>sp|Q8W206|CSN6A_ARATH COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana
GN=CSN6A PE=1 SV=2
Length = 317
Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/308 (38%), Positives = 185/308 (60%), Gaps = 25/308 (8%)
Query: 29 MAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPV--------------------QVIG 68
MA + + LHPLVI+NIS+HYTR + Q P +V G
Sbjct: 1 MAPSSSSGLTFKLHPLVIVNISDHYTRVKTQLNPPASICASGHGSNNGEAMFQQNPRVYG 60
Query: 69 ALIGIQVGRKLEIKNSFELVYNIIEDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDT 128
+IG+Q GR +EI NSFEL+Y+ ++R + K+E +K+VF D LGWY+TG
Sbjct: 61 CVIGVQRGRTVEIFNSFELLYD--PSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSD 118
Query: 129 VNELDIKVHKQICEINESPIFLKLNPHPIHS--NLPVSVYESIIDLVGGEATMLFIELPY 186
E D+ +HK + +INESP+++ LNP H+ +LPV++YES + ++ G ++F Y
Sbjct: 119 AEESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIFAHTSY 178
Query: 187 TIITEEAERMGVDHVARMSNNDSGESSL-VAEHLTAQYNAIKMLHVRIKILLDYLKEVES 245
TI T EAER+ VDHVA + +D G ++ +A HLT ++AIKML+ RI++L L ++
Sbjct: 179 TIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNLAAMQK 238
Query: 246 GTLPVNHDILRELNALRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVN 305
G ++ +LR++++L RLP +++ F+ +F + ND LITYL IT +++N+ V+
Sbjct: 239 GDKSCDNSVLRQVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVD 298
Query: 306 KFNVLFDK 313
KFN +D+
Sbjct: 299 KFNTAYDR 306
>sp|Q8W1P0|CSN6B_ARATH COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana
GN=CSN6B PE=1 SV=2
Length = 317
Score = 217 bits (552), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 183/309 (59%), Gaps = 25/309 (8%)
Query: 29 MAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPV--------------------QVIG 68
MA + + LHPLV++NIS+H+TR + Q P +V G
Sbjct: 1 MAPSSSSGLTFKLHPLVMLNISDHFTRVKTQLNPPAASCATGNGSNNADAMLLQNPRVYG 60
Query: 69 ALIGIQVGRKLEIKNSFELVYNIIEDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDT 128
+IG+Q GR +EI NSFEL+++ D ++R + K+E +K+VF D LGWY+TG
Sbjct: 61 CVIGLQRGRTVEIFNSFELIFDPALD--TLDRSFLEKKQELYKKVFPDFYVLGWYSTGSD 118
Query: 129 VNELDIKVHKQICEINESPIFLKLNPHPIHS--NLPVSVYESIIDLVGGEATMLFIELPY 186
E D+ +HK + +INESP+++ LNP H+ +LPV++YES ++ G +F+ Y
Sbjct: 119 ATESDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIPQSIFVHTSY 178
Query: 187 TIITEEAERMGVDHVARMSNNDSGESSL-VAEHLTAQYNAIKMLHVRIKILLDYLKEVES 245
TI T EAER+ VDHVA + +D G ++ +A HLT ++AIKML+ RI++L ++ ++
Sbjct: 179 TIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQHIVAMQK 238
Query: 246 GTLPVNHDILRELNALRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVN 305
G P + +LR++++L LP ++ F +F + ND L++YL IT +++N+ V+
Sbjct: 239 GDKPCENSVLRQVSSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNMNEVVD 298
Query: 306 KFNVLFDKQ 314
KFN +DK
Sbjct: 299 KFNTAYDKH 307
>sp|Q95PZ0|CSN6_CAEEL COP9 signalosome complex subunit 6 OS=Caenorhabditis elegans
GN=csn-6 PE=1 SV=1
Length = 426
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 153/294 (52%), Gaps = 26/294 (8%)
Query: 36 SIHVSLHPLVIMNISEHYTRRRAQEGKPVQ-VIGALIGIQVGRKLEIKNSFELVYNIIE- 93
S V LHPLVIM +SEHY+R + Q+G V+ V GA++G Q GR++E NSF L E
Sbjct: 11 SSKVLLHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSFVLKMETEEM 70
Query: 94 -DEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELD------------IKVHKQI 140
+ + + ++ + +Q+ +VF +L +G Y G+ N ++ ++
Sbjct: 71 AEPVTFSTEHLLQRADQYLEVFPELQVIGLYCAGEDDNLTPEEKPLLSKLTNAVRNSEKA 130
Query: 141 CEINESPIFLKLNP--HPIHSNLPVSVYESIIDLVGGEATMLFIELPYTIITEEAERMGV 198
+I+ + +FLKLN LP+ +E+ D+ E + + +++EE+ER+GV
Sbjct: 131 GQIDAT-LFLKLNSITAGTTRKLPLFAFEA--DVTDQEK---HKPIEWILVSEESERVGV 184
Query: 199 DHVARMSNNDSGESSLVAE-HLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRE 257
+H+A++S + V + H AQ A+ ML R+ +++ YL++V+ GTL N +IL+E
Sbjct: 185 NHIAKLSTKHGKDGKSVGKKHAEAQDAAMSMLQNRVDLIVAYLEKVQDGTLQPNFEILKE 244
Query: 258 LNALRHRLPVLDNPA--FKTDFYTQCNDVALITYLGTITKGCNDLNQFVNKFNV 309
N L +L +D A F F + + + + + +T ++ NK +
Sbjct: 245 ANLLAQKLKTIDRYAAEFTDSFEKEEKTMTVFSLMPRLTTLLGNMQNVWNKLSA 298
>sp|Q5BB47|CSN6_EMENI COP9 signalosome complex subunit 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnF PE=1 SV=2
Length = 386
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 110/368 (29%), Positives = 175/368 (47%), Gaps = 84/368 (22%)
Query: 31 KGVTGSIHVSLHPLVIMNISEHYTRR--RAQEGKPVQVIGALIGIQVGRKLEIKNSFELV 88
K +H+ LHPL ++ IS+H TR R+Q+G ++G L+G GR++ +++ FE V
Sbjct: 12 KSSDSGLHIQLHPLALLTISDHITRHAARSQQGP---IVGGLLGQHNGREITVEHGFECV 68
Query: 89 YNIIED-EMIINRDYYTLKEEQFKQV--FCDLDFLGWYTT----GDTVNELDIKVHKQIC 141
I + E + +++ + +QFK V LD +GW++T G T L I H+QI
Sbjct: 69 VEIGPNGEAQLPNEWFVDRVKQFKDVHKVPALDLIGWWSTAPPSGPTTAHLPI--HRQIL 126
Query: 142 EI-NESPIFLKLNPHPIHS------NLPVSVYESIID-----------LVGGEATML--- 180
+ NES +FL +P + LP+++YES+ + V GE +L
Sbjct: 127 QNHNESAVFLTFHPSQVQGASQSQGKLPLTIYESVYEGESVTENGKAMQVDGEEQLLNIR 186
Query: 181 FIELPYTIITEEAERMGVDHV----------------ARMSNNDSG-------------- 210
F ELPYTI T EAE +G+D V A S DS
Sbjct: 187 FRELPYTIETGEAEMIGIDTVARTARNAAATETSTVAAPSSQIDSDKQEQQPANTDLLSP 246
Query: 211 -ESSLVAEHLTAQYNAIKMLHVRIKILLDYLK---------EVESGTLPVNHDILRELNA 260
E L+A L + NAI+ L RI ++ YL + +S T P +H ILR++N+
Sbjct: 247 EEEELIAS-LNTRLNAIRTLESRISLIKSYLSSISPSSEEGQKDSATKP-DHTILRDINS 304
Query: 261 LRHRLPVL---DNPAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVNKF----NVLFDK 313
L L +L + AF + Q NDV+L+ LG +++ N + + + +V ++
Sbjct: 305 LLSNLSLLTPHEQSAFSAETLAQNNDVSLVALLGQLSQSVNGMREVGKRTAIVNSVRRNR 364
Query: 314 QMLGRKLR 321
+ LG + R
Sbjct: 365 KQLGAQSR 372
>sp|O24412|PSD7_ARATH Probable 26S proteasome non-ATPase regulatory subunit 7
OS=Arabidopsis thaliana GN=RPN8 PE=2 SV=1
Length = 308
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 142/284 (50%), Gaps = 16/284 (5%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDE--- 95
V +HPLV+++I +HY R K +V+G L+G +++ NS+ + + ED+
Sbjct: 17 VVVHPLVLLSIVDHYNRVAKDSSK--RVVGVLLGSSSRGVVDVTNSYAVPFE--EDDKDP 72
Query: 96 --MIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLN 153
++ +Y+ FK++ +GWY+TG + E D+ VH +P+ + ++
Sbjct: 73 SIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIID 132
Query: 154 PHPIHSNLPVSVY---ESIIDLVGGEATMLFIELPYTIITEEAERMGVDHVARMSNNDSG 210
P +P Y E + + ++ +F+ + I E E +GV+H+ R D+
Sbjct: 133 VQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVSTEIAAHEVEEIGVEHLLR-DVKDTT 191
Query: 211 ESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDN 270
S+L E +TA+ A+K L R++ + YL V G LP+NH+IL L + + LP L+
Sbjct: 192 ISTLATE-VTAKLTALKGLDARLREIRSYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNV 250
Query: 271 PAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVNKFNVLFDKQ 314
F + ND+ L+ YL ++ + L+ +N N L +K+
Sbjct: 251 NELVKAFSVKTNDMMLVIYLSSLIRSVIALHNLIN--NKLLNKE 292
>sp|O74440|RPN8_SCHPO 26S proteasome regulatory subunit rpn8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpn8 PE=3 SV=1
Length = 324
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 147/279 (52%), Gaps = 27/279 (9%)
Query: 38 HVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDE-- 95
V +HPLV+++ + Y R + +G +V+G L+G G + + NS+ + + EDE
Sbjct: 16 QVIVHPLVLLSAVDSYNR--SAKGTKRRVVGILLGQNNGDVVNVANSYAIPFE--EDEKN 71
Query: 96 ---MIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKL 152
++ ++ E FK++ + +GWY TG + D++++ + + +P+ + +
Sbjct: 72 ASVWFLDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVII 131
Query: 153 NPHPIHSNLPVSVYESI--IDLVGGEATMLFIELPYTIITEEAERMGVDHVARMSNNDSG 210
+ P LP + Y +I I+ G +++ F+ LP +I EEAE +GV+H+ R D+
Sbjct: 132 DVKPKSVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLR----DTR 187
Query: 211 ESSL--VAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRL--- 265
++S+ +A +T Q +++ L R+ + DYL++V G LP+NH IL EL ++ + L
Sbjct: 188 DASVGTLATRVTQQAQSLQGLGQRLTEIADYLRKVVDGQLPINHAILAELQSVFNLLPNI 247
Query: 266 ---PVLDNPAFKTD----FYTQCNDVALITYLGTITKGC 297
PV+ A +++ F ND + Y+ +I +
Sbjct: 248 FSGPVVSEQALESEAQRAFNVNSNDQLMSIYISSIVRAV 286
>sp|Q8WZY4|RPN8_NEUCR 26S proteasome regulatory subunit rpn-8 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=rpn-8 PE=3 SV=1
Length = 352
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 126/240 (52%), Gaps = 11/240 (4%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDE--- 95
VS+ PLV++++ +HY R +A + K +V+G L+G G+ + + NSF + + ED+
Sbjct: 16 VSVAPLVLLSVVDHYNRTQANKSKSKRVVGVLLGQNDGKNVRVSNSFAVPFE--EDDKDP 73
Query: 96 --MIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLN 153
++ +Y + FK+V +GWY +G + D+ +++ +P+ + ++
Sbjct: 74 SVWFLDHNYVESMNDMFKKVNAREKLIGWYHSGPKLRASDLDINELFKRYTPNPLLVIVD 133
Query: 154 PHPIHSNLPVSVYESIIDLV--GGEATMLFIELPYTIITEEAERMGVDHVARMSNNDSGE 211
P + +P Y ++ ++ G + F+ P I EEAE +GV+H+ R D
Sbjct: 134 VQPKETGVPTDAYFAVDEIKDDGTTTSKTFVHTPSIIEAEEAEEIGVEHLLR-DIRDVAV 192
Query: 212 SSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDNP 271
+L + +T Q +++ LH R++ + YL++V G LPVNH IL L + + LP L P
Sbjct: 193 GTL-STRITNQMRSLQGLHHRLRDIQAYLQKVLDGQLPVNHAILGNLQDVFNLLPNLSTP 251
>sp|Q9DCH4|EIF3F_MOUSE Eukaryotic translation initiation factor 3 subunit F OS=Mus
musculus GN=Eif3f PE=1 SV=2
Length = 361
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 130/265 (49%), Gaps = 5/265 (1%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMII 98
V LHP+++ +I + Y RR EG +VIG L+G +E+ N F + +N EDE+ +
Sbjct: 96 VRLHPVILASIVDSYERR--NEGA-ARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV 152
Query: 99 NRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLNPHPIH 158
+ ++ E K+V + LGWY TG + E + +H+ +PI L ++ H
Sbjct: 153 DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTGLQH 212
Query: 159 SNLPVSVYESIIDLVGGEAT-MLFIELPYTIITEEAERMGVDHVARMSNNDSGESSLVAE 217
+ + Y S + V G ++F L + ER+GVD + + + + L ++
Sbjct: 213 GRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSD 272
Query: 218 HLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDNPAFKTDF 277
L A + + +L Y ++V SG + ++ + R L +L +++P + F+T
Sbjct: 273 -LQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETML 331
Query: 278 YTQCNDVALITYLGTITKGCNDLNQ 302
+ ND+ ++TYL +T+ LN+
Sbjct: 332 NSNINDLLMVTYLANLTQSQIALNE 356
>sp|Q6FMD8|RPN8_CANGA 26S proteasome regulatory subunit RPN8 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPN8 PE=3 SV=1
Length = 329
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 146/308 (47%), Gaps = 36/308 (11%)
Query: 38 HVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIE---D 94
+V++ PLV++++ +HY R EGK + +G ++G + + NSF L + E D
Sbjct: 7 NVTIAPLVLLSVLDHYERTNTPEGK--RCVGVILGDSQTNTIRVTNSFALPFEEDEKNSD 64
Query: 95 EMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINE-SPIFLKLN 153
++ +Y E K++ +GWY +G + D+K+++ + + +P+ L ++
Sbjct: 65 VWFLDHNYIESMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQGNPLLLIVD 124
Query: 154 PHPIHSNLPVSVYESI--IDLVGGEATMLFIELPYTIITEEAERMGVDHVAR-MSNNDSG 210
LP Y ++ + G F+ LP T+ EEAE +GV+H+ R + + +G
Sbjct: 125 VKQQDVGLPTDAYMAVEQVKDDGTSTEKTFLHLPCTVEAEEAEEIGVEHLLRDVRDQAAG 184
Query: 211 ESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVL-- 268
S+ LT Q ++K L ++ ++ YL +V + LPVNH IL +L + + LP L
Sbjct: 185 GLSI---RLTNQLKSLKGLQKKLNDIVIYLNKVINNELPVNHTILGKLQDVFNLLPNLGY 241
Query: 269 ----DNPAFKTDFYT-----------QCNDVALITYLGTITKGCNDLNQFVNKFNVLFDK 313
D A D T + ND ++ Y+ + + + F+ L +
Sbjct: 242 NEETDVSATSNDMVTASNNLQRALTVKTNDELMVIYITNLVRA-------IIAFDDLIEN 294
Query: 314 QMLGRKLR 321
+M +KL+
Sbjct: 295 KMQNKKLQ 302
>sp|Q54WI8|PSD7_DICDI 26S proteasome non-ATPase regulatory subunit 7 OS=Dictyostelium
discoideum GN=psmD7 PE=3 SV=1
Length = 325
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 134/274 (48%), Gaps = 14/274 (5%)
Query: 41 LHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDE----- 95
+HP V++++ +HY R K +V+GAL+G +++ N + L + EDE
Sbjct: 10 VHPTVLLSVVDHYNRVAKDTNK--RVVGALLGSNNKGVVDVSNCYGLPFE--EDEANPNI 65
Query: 96 MIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLNPH 155
++ +++ FK++ + +GWY+TG + D +++ +P+ + ++
Sbjct: 66 WFLDHNFHENMFAMFKKINARENVVGWYSTGPKIRPADQDINELFRRYTPNPVMVIIDVA 125
Query: 156 PIHSNLPVSVYESI--IDLVGGEATMLFIELPYTIITEEAERMGVDHVARMSNNDSGESS 213
P +P Y ++ I+ E+TM F +P +I EAE + ++H+ R DS SS
Sbjct: 126 PKELGIPTKSYVTVEEINKDTSESTMRFQHIPSSIDAVEAEEICIEHLLR-DVKDSSISS 184
Query: 214 LVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDNPAF 273
L + +T + ++K L ++ + YLK V GTLP NH I+ + + + P L+
Sbjct: 185 LTTQ-ITDKKISLKHLLTNLQEMQHYLKLVCDGTLPPNHQIIGYIQDIINLSPNLNANEI 243
Query: 274 KTDFYTQCNDVALITYLGTITKGCNDL-NQFVNK 306
F Q ND + YL ++ + L N +NK
Sbjct: 244 SKSFAVQNNDTMSVIYLSSMIRSIIALHNLIINK 277
>sp|P26270|PSD7_DROME 26S proteasome non-ATPase regulatory subunit 7 OS=Drosophila
melanogaster GN=Mov34 PE=1 SV=6
Length = 338
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 141/275 (51%), Gaps = 13/275 (4%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRK-LEIKNSFELVYNIIEDE-- 95
V +HPLV++++ +H+ R + G +V+G L+G + L++ NSF + ++ ED+
Sbjct: 11 VIVHPLVLLSVVDHFNRM-GKIGNQKRVVGVLLGCWRSKGVLDVSNSFAVPFD--EDDKD 67
Query: 96 ---MIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKL 152
++ DY FK+V +GWY TG +++ DI +++ + + + + +
Sbjct: 68 KSVWFLDHDYLENMYGMFKKVNARERVVGWYHTGPKLHQNDIAINELVRRYCPNSVLVII 127
Query: 153 NPHPIHSNLPVSVYESIIDL--VGGEATMLFIELPYTIITEEAERMGVDHVARMSNNDSG 210
+ P LP Y S+ ++ G + F +P I EEAE +GV+H+ R D+
Sbjct: 128 DAKPKDLGLPTEAYISVEEVHDDGSPTSKTFEHVPSEIGAEEAEEVGVEHLLR-DIKDTT 186
Query: 211 ESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDN 270
SL ++ +T Q +K L+ +++ + YL+ V +P+NH I+ +L + + LP + N
Sbjct: 187 VGSL-SQKITNQLMGLKGLNAQLRDIKQYLQRVGDSKMPINHQIVYQLQDIFNLLPDITN 245
Query: 271 PAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVN 305
F Y + ND L+ YL ++ + L+ +N
Sbjct: 246 DQFTGTMYVKTNDQMLVVYLASMVRSIIALHNLIN 280
>sp|P26516|PSD7_MOUSE 26S proteasome non-ATPase regulatory subunit 7 OS=Mus musculus
GN=Psmd7 PE=1 SV=2
Length = 321
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 142/274 (51%), Gaps = 12/274 (4%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDE--- 95
V +HPLV++++ +H+ R + G +V+G L+G + L++ NSF + ++ ED+
Sbjct: 9 VVVHPLVLLSVVDHFNRI-GKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFD--EDDKDD 65
Query: 96 --MIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLN 153
++ DY FK+V +GWY TG +++ DI +++ + + + + ++
Sbjct: 66 SVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIID 125
Query: 154 PHPIHSNLPVSVYESIIDL--VGGEATMLFIELPYTIITEEAERMGVDHVARMSNNDSGE 211
P LP Y S+ ++ G + F + I EEAE +GV+H+ R D+
Sbjct: 126 VKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLR-DIKDTTV 184
Query: 212 SSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDNP 271
+L ++ +T Q + +K L+ ++ + YL++V SG LP+NH I+ +L + + LP
Sbjct: 185 GTL-SQRITNQVHGLKGLNSKLLDIRSYLEKVASGKLPINHQIIYQLQDVFNLLPDASLQ 243
Query: 272 AFKTDFYTQCNDVALITYLGTITKGCNDLNQFVN 305
F FY + ND ++ YL ++ + L+ +N
Sbjct: 244 EFVKAFYLKTNDQMVVVYLASLIRSVVALHNLIN 277
>sp|P51665|PSD7_HUMAN 26S proteasome non-ATPase regulatory subunit 7 OS=Homo sapiens
GN=PSMD7 PE=1 SV=2
Length = 324
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 143/274 (52%), Gaps = 12/274 (4%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDE--- 95
V +HPLV++++ +H+ R + G +V+G L+G + L++ NSF + ++ ED+
Sbjct: 9 VVVHPLVLLSVVDHFNRI-GKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFD--EDDKDD 65
Query: 96 --MIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLN 153
++ DY FK+V +GWY TG +++ DI +++ + + + + ++
Sbjct: 66 SVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIID 125
Query: 154 PHPIHSNLPVSVYESIIDL--VGGEATMLFIELPYTIITEEAERMGVDHVARMSNNDSGE 211
P LP Y S+ ++ G + F + I EEAE +GV+H+ R D+
Sbjct: 126 VKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLR-DIKDTTV 184
Query: 212 SSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDNP 271
+L ++ +T Q + +K L+ ++ + YL++V +G LP+NH I+ +L + + LP +
Sbjct: 185 GTL-SQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQ 243
Query: 272 AFKTDFYTQCNDVALITYLGTITKGCNDLNQFVN 305
F FY + ND ++ YL ++ + L+ +N
Sbjct: 244 EFVKAFYLKTNDQMVVVYLASLIRSVVALHNLIN 277
>sp|A5A6I3|EIF3F_PANTR Eukaryotic translation initiation factor 3 subunit F OS=Pan
troglodytes GN=EIF3F PE=2 SV=1
Length = 361
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 130/265 (49%), Gaps = 5/265 (1%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMII 98
V LHP+++ +I + Y RR EG +VIG L+G +E+ N F + +N EDE+ +
Sbjct: 96 VRLHPVILASIVDSYERR--NEGA-ARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV 152
Query: 99 NRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLNPHPIH 158
+ ++ E K+V + LGWY TG + E + +H+ +PI L ++ +
Sbjct: 153 DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQN 212
Query: 159 SNLPVSVYESIIDLVGGEAT-MLFIELPYTIITEEAERMGVDHVARMSNNDSGESSLVAE 217
+ + Y S + V G ++F L + ER+GVD + + + + L ++
Sbjct: 213 GRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSD 272
Query: 218 HLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDNPAFKTDF 277
L A + + +L Y ++V SG + ++ + R L +L +++P + F+T
Sbjct: 273 -LQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETML 331
Query: 278 YTQCNDVALITYLGTITKGCNDLNQ 302
+ ND+ ++TYL +T+ LN+
Sbjct: 332 NSNINDLLMVTYLANLTQSQIALNE 356
>sp|Q4R5B8|EIF3F_MACFA Eukaryotic translation initiation factor 3 subunit F OS=Macaca
fascicularis GN=EIF3F PE=2 SV=1
Length = 361
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 130/265 (49%), Gaps = 5/265 (1%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMII 98
V LHP+++ +I + Y RR EG +VIG L+G +E+ N F + +N EDE+ +
Sbjct: 96 VRLHPVILASIVDSYERR--NEGA-ARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV 152
Query: 99 NRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLNPHPIH 158
+ ++ E K+V + LGWY TG + E + +H+ +PI L ++ +
Sbjct: 153 DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQN 212
Query: 159 SNLPVSVYESIIDLVGGEAT-MLFIELPYTIITEEAERMGVDHVARMSNNDSGESSLVAE 217
+ + Y S + V G ++F L + ER+GVD + + + + L ++
Sbjct: 213 GRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSD 272
Query: 218 HLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDNPAFKTDF 277
L A + + +L Y ++V SG + ++ + R L +L +++P + F+T
Sbjct: 273 -LQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETML 331
Query: 278 YTQCNDVALITYLGTITKGCNDLNQ 302
+ ND+ ++TYL +T+ LN+
Sbjct: 332 NSNINDLLMVTYLANLTQSQIALNE 356
>sp|O00303|EIF3F_HUMAN Eukaryotic translation initiation factor 3 subunit F OS=Homo
sapiens GN=EIF3F PE=1 SV=1
Length = 357
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 130/265 (49%), Gaps = 5/265 (1%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMII 98
V LHP+++ +I + Y RR EG +VIG L+G +E+ N F + +N EDE+ +
Sbjct: 92 VRLHPVILASIVDSYERR--NEGA-ARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV 148
Query: 99 NRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLNPHPIH 158
+ ++ E K+V + LGWY TG + E + +H+ +PI L ++ +
Sbjct: 149 DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQN 208
Query: 159 SNLPVSVYESIIDLVGGEAT-MLFIELPYTIITEEAERMGVDHVARMSNNDSGESSLVAE 217
+ + Y S + V G ++F L + ER+GVD + + + + L ++
Sbjct: 209 GRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSD 268
Query: 218 HLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDNPAFKTDF 277
L A + + +L Y ++V SG + ++ + R L +L +++P + F+T
Sbjct: 269 -LQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETML 327
Query: 278 YTQCNDVALITYLGTITKGCNDLNQ 302
+ ND+ ++TYL +T+ LN+
Sbjct: 328 NSNINDLLMVTYLANLTQSQIALNE 352
>sp|Q3ZBD0|PSD7_BOVIN 26S proteasome non-ATPase regulatory subunit 7 OS=Bos taurus
GN=PSMD7 PE=2 SV=1
Length = 322
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 143/274 (52%), Gaps = 12/274 (4%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDE--- 95
V +HPLV++++ +H+ R + G +V+G L+G + L++ NSF + ++ ED+
Sbjct: 9 VVVHPLVLLSVVDHFNRI-GKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFD--EDDKDD 65
Query: 96 --MIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLN 153
++ DY FK+V +GWY TG +++ DI +++ + + + + ++
Sbjct: 66 SVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIID 125
Query: 154 PHPIHSNLPVSVYESIIDL--VGGEATMLFIELPYTIITEEAERMGVDHVARMSNNDSGE 211
P LP Y S+ ++ G + F + I EEAE +GV+H+ R D+
Sbjct: 126 VKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLR-DIKDTTV 184
Query: 212 SSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDNP 271
+L ++ +T Q + +K L+ ++ + YL++V +G LP+NH I+ +L + + LP +
Sbjct: 185 GTL-SQRITNQVHGLKGLNSKLLDIRGYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQ 243
Query: 272 AFKTDFYTQCNDVALITYLGTITKGCNDLNQFVN 305
F FY + ND ++ YL ++ + L+ +N
Sbjct: 244 EFVKAFYLKTNDQMVVVYLASLIRSVVALHNLIN 277
>sp|Q7S8C8|CSN6_NEUCR COP9 signalosome complex subunit 6 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-6 PE=1 SV=1
Length = 497
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 105/201 (52%), Gaps = 40/201 (19%)
Query: 36 SIHVSLHPLVIMNISEHYTRR--RAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIE 93
S+ V+LHPL I+ IS++ TR R +G ++GALIG Q GR++ I++SF +
Sbjct: 18 SLQVALHPLPILEISDYITRSYLRGYKGA---IVGALIGQQNGRQITIEHSFSVKTEHTG 74
Query: 94 DEMIINRDYYTLKEEQFKQVFCD--LDFLGWYT----TGDTVNELDIKVHKQICEINESP 147
++ +++T + +Q K V D LDF+GWYT +G T + + +H NES
Sbjct: 75 QNYKVDSEWFTARLDQMKAVHKDRALDFVGWYTLVPKSGPT--DAHLPIHSYFYSQNESA 132
Query: 148 IFLKLNPH----PIHSN-LPVSVYESIIDLVGG-EATML--------------------- 180
+ L + H P+ + LP+++YES +++V G EA+ +
Sbjct: 133 VLLGFHIHEILNPVAGDPLPLTIYESNLEIVDGTEASTVEVEGEDREMKDVTAEPSRSIK 192
Query: 181 FIELPYTIITEEAERMGVDHV 201
F ELPYT T EAE + ++ V
Sbjct: 193 FRELPYTTETGEAEMIALEFV 213
>sp|Q75F44|RPN8_ASHGO 26S proteasome regulatory subunit RPN8 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPN8 PE=3 SV=1
Length = 326
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 124/243 (51%), Gaps = 16/243 (6%)
Query: 38 HVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIE---D 94
V++ PLV++++ +HY R + K + +G L+G G +++ NSF L + E D
Sbjct: 7 QVNVAPLVLLSVLDHYKRMNTPDNK--RCVGVLLGDNSGSTIKVTNSFALPFEEDEKNPD 64
Query: 95 EMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVH---KQICEINESPIFLK 151
++ +Y + K++ +GWY +G + D+K++ K+ + N + +
Sbjct: 65 VWFLDHNYIENMNDMCKKINAKEKMIGWYHSGPKLRSSDLKINGLFKKYTQGNSLLLIVD 124
Query: 152 LNPHPIHSNLPVSVYESIIDLV--GGEATMLFIELPYTIITEEAERMGVDHVAR-MSNND 208
+ + LP Y +I ++ G F+ LP I EEAE +GV+H+ R + +
Sbjct: 125 VKQQGV--GLPTDAYMAIEEVKDDGSSTERTFVHLPTAIEAEEAEEIGVEHLLRDVRDQA 182
Query: 209 SGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVL 268
+G SL LT Q +++ L +++ ++ YL +V SG LP NH IL +L + + LP L
Sbjct: 183 AGNLSL---RLTNQLKSLQGLQRKLRDIVAYLDKVNSGQLPANHIILGKLQDVFNLLPNL 239
Query: 269 DNP 271
+P
Sbjct: 240 GSP 242
>sp|Q08723|RPN8_YEAST 26S proteasome regulatory subunit RPN8 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN8 PE=1 SV=3
Length = 338
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 124/240 (51%), Gaps = 12/240 (5%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIE---DE 95
V++ PLV+++ +HY R + +E K + +G ++G + + NSF L + E D
Sbjct: 8 VTIAPLVLLSALDHYERTQTKENK--RCVGVILGDANSSTIRVTNSFALPFEEDEKNSDV 65
Query: 96 MIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINES-PIFLKLNP 154
++ +Y E K++ +GWY +G + D+K+++ + ++ P+ L ++
Sbjct: 66 WFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDV 125
Query: 155 HPIHSNLPVSVYESI--IDLVGGEATMLFIELPYTIITEEAERMGVDHVAR-MSNNDSGE 211
LP Y +I + G F+ LP TI EEAE +GV+H+ R + + +G
Sbjct: 126 KQQGVGLPTDAYVAIEQVKDDGTSTEKTFLHLPCTIEAEEAEEIGVEHLLRDVRDQAAGG 185
Query: 212 SSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDNP 271
S+ LT Q ++K L ++K +++YL +V + LP+NH IL +L + + LP L P
Sbjct: 186 LSI---RLTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQDVFNLLPNLGTP 242
>sp|Q54C49|EIF3F_DICDI Eukaryotic translation initiation factor 3 subunit F
OS=Dictyostelium discoideum GN=eif3f PE=3 SV=1
Length = 284
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 129/272 (47%), Gaps = 26/272 (9%)
Query: 37 IHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEM 96
+ V +HP+VI NI +HY RR + + VIG L+G LEI+N F +V++ E
Sbjct: 13 VTVKVHPVVIFNILDHYIRRNVGQDR---VIGTLLGFNNDGVLEIRNCFPVVHSETEQIA 69
Query: 97 IINRDYYTLKEEQFKQVFCDLDF--------LGWYTTGDTVNELDIKVHKQICEI--NES 146
+ E ++++ DL +GWY TG+ +NE + ++ + N +
Sbjct: 70 V---------EMEYQRKMLDLHLKSSPREPIIGWYATGNDINENSVHINNFYRDEMGNST 120
Query: 147 PIFLKLNPHPIHSNLPVSVYESIIDLVGGEATM--LFIELPYTIITEEAERMGVDHVARM 204
PI L ++ + + + Y + + E+++ F +LP I+T EAE G++ +A+
Sbjct: 121 PIHLTVDTGLTNDTMGIHAYMAHNLSLNPESSLGSYFSQLPLEILTFEAENAGLESIAQ- 179
Query: 205 SNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHR 264
+ D +SL++E L + ++ L ++ + Y++ VE G + + + R L
Sbjct: 180 TKYDQQSTSLLSE-LESLQGSLTKLDEMLESITSYIESVEKGEIQGDPRLGRFLAKTIQA 238
Query: 265 LPVLDNPAFKTDFYTQCNDVALITYLGTITKG 296
LP + D+ +I YL ++T+
Sbjct: 239 LPKANAQVMDKVINNSVKDLLMIVYLSSLTRS 270
>sp|O43060|EIF3F_SCHPO Eukaryotic translation initiation factor 3 subunit F
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=eif3f PE=1 SV=1
Length = 302
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 136/299 (45%), Gaps = 44/299 (14%)
Query: 34 TGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQV--GRKLEIKNSFELVYN- 90
+ +++ + P V+ +I +H TR+ + VIG L+G + GR++EIK+ F + +N
Sbjct: 18 SSPLNIVIEPAVLFSILDHSTRKSENNQR---VIGTLLGTRSEDGREIEIKSCFAVPHNE 74
Query: 91 ---IIEDEMIINRDYYTLK-EEQFKQVFCDLDFLGWYTTG---DTVNELDIKVHKQICEI 143
+E EM +R Y L + ++V +GWY T D + L ++ E
Sbjct: 75 SSEQVEVEMEYHRAMYHLHLKANPREVV-----VGWYATSPDLDAFSALIQNLYASPAEP 129
Query: 144 NESPIFLKLNPHP---------IHSNL--------PVSVYESIIDLVGGEATMLFIELPY 186
+P L PHP + S L PV + E + D + F+ P+
Sbjct: 130 GTAP--LGTYPHPCVHLTVNTDVSSPLAIKTYVSSPVGITERLAD------SCAFVPTPF 181
Query: 187 TIITEEAERMGVDHVARMSNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESG 246
TI +EA R G+ VA N+ S +SL + + + +++L + I+ + DY++ V G
Sbjct: 182 TIRDDEAVRSGLKAVAAPKNDPSRLASLFTDLQQLRRSTLELLSM-IERVSDYVQNVIDG 240
Query: 247 TLPVNHDILRELNALRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVN 305
+ P N + R L +P ++ F+ F + DV ++ YL + D+ +N
Sbjct: 241 SSPANVAVGRYLMKCFSLIPCVEGQDFEKIFSSHLQDVLVVVYLANTLRTQVDIASRLN 299
>sp|Q9P748|EIF3F_NEUCR Eukaryotic translation initiation factor 3 subunit F OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=1A9.200 PE=3 SV=2
Length = 369
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 140/304 (46%), Gaps = 39/304 (12%)
Query: 23 PAGKSVMAKGVTGS-IHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQV--GRKL 79
P +V+ GV+ + + V++ P + +I +H RR ++ + +VIGAL+G++ G ++
Sbjct: 14 PLAPNVLGFGVSNAPLTVNIQPQAVFSIIDHAVRRDDRDTQSTRVIGALVGVRSEDGSEV 73
Query: 80 EIKNSFELVYNIIEDEMIINRDYY------TLKEEQFKQVFCDLDFLGWYTTGDTVNELD 133
E++++F + + ED++ ++ +Y TLK + LGWYTT +N
Sbjct: 74 EVRSTFAIPHTENEDQVEVDVEYQKNMLALTLKANPRET------LLGWYTTSHELNSFS 127
Query: 134 IKVHKQICEINESPIFLKLNPHP-IH--------SNLPVSVYESIIDLVGGE---ATMLF 181
+ E+ F PHP +H + + Y S V E + LF
Sbjct: 128 ALIQNFFAS-PETGTF----PHPAVHLTIGTEAGATIDTKTYISAPVAVSPERAAESCLF 182
Query: 182 IELPYTIITEEAERMGVDHVARMSNNDSGESSLVA--EHLTAQYNAIKMLHVRIKILL-D 238
IE+P+ ++ +AER + VA ++ +S + +V+ E+L + L R+ + +
Sbjct: 183 IEVPHKLLFTDAERGALGSVAAAADAESRSAPVVSDIENLAQALETVSDLLERVSGFVGE 242
Query: 239 YLKEVESGTLPVNHDILRELNALRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITKGCN 298
L E G NH + + L P + N A + DF DV +++YL +
Sbjct: 243 VLDEERDG----NHALGQYLMNALSLAPKVSNLAIENDFNNHIQDVLMVSYLANTIRTQI 298
Query: 299 DLNQ 302
+L+Q
Sbjct: 299 ELSQ 302
>sp|B5E1N0|EI3F2_DROPS Eukaryotic translation initiation factor 3 subunit F-2
OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-2
PE=3 SV=1
Length = 288
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 128/271 (47%), Gaps = 23/271 (8%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPV-QVIGALIGIQVGR--KLEIKNSFELVYNI---- 91
V LHPLV+ I + Y RR K V +V+G L+G G+ ++EI N F +V+ +
Sbjct: 12 VLLHPLVLFQIIDAYERR----AKDVPEVLGTLLGTVAGKTGRIEITNCFSVVHRMHGDN 67
Query: 92 ---IEDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVH---KQICEINE 145
I+ ++ + D L + + Q LGW++TG +V+ +++H ++ C N
Sbjct: 68 NCHIDLDLKYDNDMLELAQIAYPQE----KVLGWFSTGKSVSAAAVELHEYYERQCH-NG 122
Query: 146 SPIFLKLNPHPIHSNLPVSVYESIIDLV-GGEATMLFIELPYTIITEEAERMGVDHVARM 204
P+ L ++ + ++ ++ V GG ++F LP I + + + H+ R
Sbjct: 123 QPLHLLMDTSLRGQRMNTRIFCAVATGVPGGTKGLMFSLLPMDIYFGSPDIVAMRHMGRQ 182
Query: 205 SNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHR 264
+ ++ + L +A K + ++ ++L Y+ ++ + ++ + R L+ +
Sbjct: 183 CAQPTKDAGRLLPELEQVVDATKDIQQKLDLVLRYINDILNRKRRPDNTVGRALHDVLTS 242
Query: 265 LPVLDNPAFKTDFYTQCNDVALITYLGTITK 295
+P+++ F+ F T D+ + L ++ K
Sbjct: 243 VPMVEAERFRHMFNTNMRDLLMSLTLSSMIK 273
>sp|B4HBD2|EI3F2_DROPE Eukaryotic translation initiation factor 3 subunit F-2
OS=Drosophila persimilis GN=eIF3-S5-2 PE=3 SV=1
Length = 288
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 127/271 (46%), Gaps = 23/271 (8%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPV-QVIGALIGIQVGR--KLEIKNSFELVYNI---- 91
V LHPLV+ I + Y RR K V +V+G L+GI G+ ++EI N F +V+ +
Sbjct: 12 VLLHPLVLFQIIDAYERR----AKDVPEVLGTLLGIVAGKTGRIEITNCFSVVHRMHGDN 67
Query: 92 ---IEDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVH---KQICEINE 145
I+ ++ + D L + + Q +GW++TG V+ +++H ++ C +
Sbjct: 68 NCHIDLDLKYDNDMLELAQIAYPQE----KVVGWFSTGKAVSAAAVELHEYYERQCHSGQ 123
Query: 146 SPIFLKLNPHPIHSNLPVSVYESIIDLV-GGEATMLFIELPYTIITEEAERMGVDHVARM 204
P+ L ++ + ++ ++ V GG ++F LP I + + + H+ R
Sbjct: 124 -PLHLLMDTSLRGQRMNTRIFCAVATGVPGGTKGLMFSLLPMDIYFGSPDIVAMRHMGRQ 182
Query: 205 SNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHR 264
E+ + L +A K + ++ ++L Y+ ++ + ++ + R L+ +
Sbjct: 183 CALPPKEAGRLLPELEQVVDATKDIQQKLDLVLRYINDILNRKRRPDNTVGRALHDVLTS 242
Query: 265 LPVLDNPAFKTDFYTQCNDVALITYLGTITK 295
+P+++ F+ F T D+ + L ++ K
Sbjct: 243 VPMVEAERFRHMFNTNMRDLLMSLTLSSMIK 273
>sp|B3MJ61|EI3F2_DROAN Eukaryotic translation initiation factor 3 subunit F-2
OS=Drosophila ananassae GN=eIF3-S5-2 PE=3 SV=1
Length = 285
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 119/265 (44%), Gaps = 13/265 (4%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMII 98
V L PLV+ I + Y RR Q+IG L+G G+++ I N F +++ D I
Sbjct: 11 VVLQPLVLFQIIDSYERR---PKDATQIIGTLLGRSNGKEITITNCFTVLHKEHPDSARI 67
Query: 99 NRD--YYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVH---KQICEINESPIFLKLN 153
+ D Y E + + LGW++TG +V+ + +H + C + P+ L ++
Sbjct: 68 DLDLGYANDMLELNQLTYPQEKVLGWFSTGKSVSRSALLLHDYYSRECS-DGQPLHLLVD 126
Query: 154 PHPIHSNLPVSVYESI-IDLVGGEATMLFIELPYTIITEEAERMGVDHVARMSNNDSGES 212
L +Y + + + GG ++F +P + ++ AE + + + + N G
Sbjct: 127 ATLKGQRLSTRLYCGVEMGVPGGTKGLMFSLVPLEMASDSAEMVAL-RLMQKQNLQPGAK 185
Query: 213 SL--VAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDN 270
+ + L A + L +R+ ++L Y+ +V + ++ + R L+ +P++D
Sbjct: 186 QVGRILPELVQVVEATRELQLRLDLVLRYINDVLARKRRPDNVVGRALHDTLTSVPLVDT 245
Query: 271 PAFKTDFYTQCNDVALITYLGTITK 295
FK F D+ + L T+ K
Sbjct: 246 DNFKLMFNANVRDMLMAITLSTMIK 270
>sp|Q2HGJ2|EIF3F_CHAGB Eukaryotic translation initiation factor 3 subunit F OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=CHGG_00662 PE=3 SV=1
Length = 357
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 131/296 (44%), Gaps = 40/296 (13%)
Query: 32 GVTGSIHVSLH--PLVIMNISEHYTRRRAQEGKPVQVIGALIGIQV--GRKLEIKNSFEL 87
G TGS +++H P + ++ +H RR ++ + +VIGAL+G + G ++E++++F +
Sbjct: 21 GFTGSAPLTVHIQPQAVFSVIDHAVRRDTRDTQSTRVIGALVGTRSEDGSEVEVRSTFAI 80
Query: 88 VYNIIEDEMIINRDY------YTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQIC 141
+ ED++ ++ +Y TLK + + LGWYTT +N +
Sbjct: 81 PHTENEDQVEVDVEYQKNMLALTLKASPRETL------LGWYTTSHELNSFSALIQNFFA 134
Query: 142 EINESPIFLKLNPHP-IHSNL------PVSVYESIIDLVG-----GEATMLFIELPYTII 189
E+ F PHP +H + P++ I V + LFIE+P+ ++
Sbjct: 135 S-PETGTF----PHPAVHLTISTEPGAPIATKAYISAPVAVSPERAAESCLFIEVPHKLL 189
Query: 190 TEEAERMGVDHVARMSNNDSGESSLVA--EHLTAQYNAIKMLHVRIKILL-DYLKEVESG 246
+AER + + ++ + +++ E L ++ L R+ + + L E G
Sbjct: 190 FSDAERAALGTATAAAETEARSAPVISDIETLAQSLESVSDLLERVSGFVGEVLDEERDG 249
Query: 247 TLPVNHDILRELNALRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITKGCNDLNQ 302
+ + ++ L+ P + + DF DV +++YL + DL Q
Sbjct: 250 SHALGQYLMNALSL----APKVSATQIEADFNNHVQDVLMVSYLANTIRTQIDLAQ 301
>sp|B4QD77|EI3F2_DROSI Eukaryotic translation initiation factor 3 subunit F-2
OS=Drosophila simulans GN=eIF3-S5-2 PE=3 SV=1
Length = 285
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 124/273 (45%), Gaps = 9/273 (3%)
Query: 29 MAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELV 88
M++ ++ V L PLV+ I + Y RR + QV+G L+G +EI N F +
Sbjct: 1 MSRNLSMRAKVFLKPLVLFQIIDAYDRRPKGDN---QVMGTLLGRNKEDHIEITNCFTVP 57
Query: 89 YNIIEDEMIINRDYYTLKEEQFKQVFC--DLDFLGWYTTGDTVNELDIKVHK-QICEINE 145
+ + I+ D E +F + LGW+ TG +V+ +H + E E
Sbjct: 58 HKEHSENKRIDLDMTYASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDYYVRECGE 117
Query: 146 -SPIFLKLNPHPIHSNLPVSVYESI-IDLVGGEATMLFIELPYTIITEEAERMGVDHVAR 203
P+ L ++ + L +Y ++ + + GG ++F +P I +E ++ + + + +
Sbjct: 118 RQPLHLLVDASLKNQRLSTRLYCAVEMGVPGGTKGLMFSLVPLEISSENSDLLAMRCIEK 177
Query: 204 MSNNDSGES-SLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALR 262
S + + A L +A + + R+ +LL Y+ +V + ++ + R L A
Sbjct: 178 QSQQQASKQMERFAPELVQVVDATRDIQQRLDLLLRYINDVLARKKKPDNVVGRSLQAAL 237
Query: 263 HRLPVLDNPAFKTDFYTQCNDVALITYLGTITK 295
+P+LD+ F+ F T D+ + L T+ K
Sbjct: 238 TAVPLLDSEKFRLMFNTNLRDMLMAITLSTMIK 270
>sp|Q4PI88|EIF3F_USTMA Eukaryotic translation initiation factor 3 subunit F OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=UM00175 PE=3 SV=1
Length = 301
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 127/292 (43%), Gaps = 32/292 (10%)
Query: 21 DTPA--GKSVM-AKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGR 77
D PA G VM ++ VTG +HV HP+ + +I +HY RR + + VIG L+G +
Sbjct: 14 DFPASTGSGVMHSRSVTG-VHV--HPVALFSILDHYLRRNDGQHR---VIGTLLGTRTES 67
Query: 78 KLEIKNSFELVY--NIIEDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIK 135
++EIKN F + + + E ++ ++ +Y+ E ++V D +GWY T +N
Sbjct: 68 EIEIKNCFAVPHLEDAEEGQVQVDMEYHRSMYELCQKVRPDEVIVGWYATSPELNTYSAL 127
Query: 136 VH---------KQICEINESPIFLKLNPHPIHSNLPVSVY-ESIIDLVGGEATMLFIELP 185
+ Q + P S L + Y S + +F+ LP
Sbjct: 128 IQDFYSRETAPHQAVHLTMDTTIDGSKP----SGLGIKSYISSPLGATPKAENCVFLPLP 183
Query: 186 YTIITEEAERMGVDHVARMSNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVES 245
++ E + +A S N S + L A ++K + ++ +L Y++ V S
Sbjct: 184 TNLLHSTPEHSSLSLLA--SQNISSPLT----DLDALAVSLKQVQSQLDRVLTYVRAVIS 237
Query: 246 GTLPVNHDILRELNALRHRLPV-LDNPAFKTDFYTQCNDVALITYLGTITKG 296
G + + R LN +P LD+ +T F DV +++YL + +
Sbjct: 238 GEKEGDKAVGRFLNDTISVVPAGLDDNKLETLFNAHLQDVLMVSYLANVVRA 289
>sp|A8PZS4|EIF3F_MALGO Eukaryotic translation initiation factor 3 subunit F OS=Malassezia
globosa (strain ATCC MYA-4612 / CBS 7966) GN=MGL_1945
PE=3 SV=1
Length = 300
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 134/305 (43%), Gaps = 22/305 (7%)
Query: 6 AAAPTATSSEVMDVDDTPAGKSVM-AKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPV 64
A T +S + + PA V ++ +T V +HP+ + +I +HY RR + +
Sbjct: 2 AEKSTLAASSALHLSFPPAASGVFHSRSITA---VKVHPVALFSILDHYLRRDVSQPR-- 56
Query: 65 QVIGALIGIQVGRKLEIKNSFELVYNIIEDEMIINRD--YYTLKEEQFKQVFCDLDFLGW 122
VIG L+G + ++E++N+F + + +D I+ D ++ + +V D LGW
Sbjct: 57 -VIGTLLGTRSESEVEVRNAFAVPHGESQDPWQIHLDAEHHRRMLDLHLRVRPDEVVLGW 115
Query: 123 YTTGDTVNELD--IKVHKQICEINESPIFLKLNPHPIHSNLPVSVYESIIDLVGGEAT-- 178
Y+T +N I+ H I L LN + + V + L+G A
Sbjct: 116 YSTNTELNSNSALIQDHYSRETAPHQAIHLTLNTNVADEANGLGVQCYVSALLGAMAKPE 175
Query: 179 -MLFIELPYTIITEEAERMGVDHVARMSNNDSGESSLVAEHLTAQYNAIKMLHVRIKILL 237
F+ LP ++ E+ + H+A + + L A +++ + ++ +L
Sbjct: 176 DCAFLSLPTHLLMSTPEQTALRHLAAPKPQNITD-------LDALKASLEDVQAKLDRVL 228
Query: 238 DYLKEVESGTLPVNHDILRELNALRHRLPV-LDNPAFKTDFYTQCNDVALITYLGTITKG 296
Y++ V +G + + + R L+ +P LD ++ F + DV +++YL +
Sbjct: 229 TYVRRVLAGEVEGDKAVGRYLSDTIGVVPAGLDESLLESLFQSHLQDVFMVSYLSKLVSA 288
Query: 297 CNDLN 301
+++
Sbjct: 289 QAEMS 293
>sp|B4KBI4|EI3F1_DROMO Eukaryotic translation initiation factor 3 subunit F-1
OS=Drosophila mojavensis GN=eIF3-S5-1 PE=3 SV=1
Length = 280
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 124/272 (45%), Gaps = 15/272 (5%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVY----NIIED 94
V +HP+V+ + + + RR A + VIG L+G +E+ N F + + + +E
Sbjct: 8 VRVHPVVLFQVVDAFERRNADSHR---VIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA 64
Query: 95 EMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLNP 154
E+ D Y L ++V + + +GW+ TG+ V +H+ +P+ L ++
Sbjct: 65 ELSYALDMYDLN----RKVNANENVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDT 120
Query: 155 HPIHSNLPVSVYESI-IDLVGGEATMLFIELPYTIITEEAERMGVDHVAR-MSNNDSGES 212
+ + Y I + + GG+ +F +P + + E E G+ + + ++ + +
Sbjct: 121 SLQSGRMGLRAYICIQLGVPGGKTGCMFTPIPVELTSYEPETFGLKLLQKTVTVSPAHRP 180
Query: 213 SLVAEHLT-AQYN-AIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDN 270
VA L AQ + A L + ++L Y+ +V + + ++ + R+L L H +P + +
Sbjct: 181 KTVAPMLDLAQISEAATKLQSLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTH 240
Query: 271 PAFKTDFYTQCNDVALITYLGTITKGCNDLNQ 302
F F D+ ++ L + K LN+
Sbjct: 241 EQFTQMFNANVRDLLMVITLSQLIKTQLQLNE 272
>sp|O04202|EIF3F_ARATH Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis
thaliana GN=TIF3F1 PE=2 SV=1
Length = 293
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 109/249 (43%), Gaps = 11/249 (4%)
Query: 27 SVMAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIG-IQVGRKLEIKNSF 85
S A T + +HPLVI N+ + + RR + VIG L+G I ++I+NS+
Sbjct: 16 SSTASATTSVLTARIHPLVIFNVCDCFVRRPDSAER---VIGTLLGSILPDGTVDIRNSY 72
Query: 86 ELVYNIIEDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINE 145
+ +N D++ ++ DY+ +V +GWY+TG VN +H
Sbjct: 73 AVPHNESSDQVAVDIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVP 132
Query: 146 SPIFLKLNPHPIHSNLPVSVY-ESIIDLVGGEATMLFIELPYTIITEEAERMGVDHVARM 204
+PI L ++ + + + S + L + F E+P + +AER+G D V +
Sbjct: 133 NPIHLTVDTGFTNGEGTIKAFVSSNLSLGDRQLVAHFQEIPVDLRMVDAERVGFD-VLKA 191
Query: 205 SNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHR 264
++ D + L LT ++ L I + Y+ V G + +++I R +
Sbjct: 192 TSVDKLPNDLEGMELT-----MERLLTLINDVYKYVDSVVGGQIAPDNNIGRFIADAVAS 246
Query: 265 LPVLDNPAF 273
LP L F
Sbjct: 247 LPKLPPQVF 255
>sp|A4R0E5|EIF3F_MAGO7 Eukaryotic translation initiation factor 3 subunit F OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=MGG_10653 PE=3 SV=1
Length = 370
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 132/296 (44%), Gaps = 34/296 (11%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQV--GRKLEIKNSFELVYNIIEDEM 96
V++ P I++I +H RR ++ + +VIGAL+G++ G +E++++F + + ED++
Sbjct: 31 VTIQPQAILSILDHAVRRDIRDTQATRVIGALVGVRSEDGTDVEVRSTFAIPHTENEDQV 90
Query: 97 IINRDYY------TLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFL 150
++ +Y TLK + LGWYTT +N + E+ F
Sbjct: 91 EVDVEYQKNMLALTLKASPRES------LLGWYTTSHELNSFSALIQNFFAS-PETGTF- 142
Query: 151 KLNPHP-IH--------SNLPVSVYESIIDLVGGE---ATMLFIELPY-TIITEEAERMG 197
PHP +H +++ Y S V + + FI++P+ T T E++R
Sbjct: 143 ---PHPAVHLTMSTDPGADIEPRCYISAPAAVSPDRAAESCFFIQVPHRTPPTNESDRAA 199
Query: 198 VDHVARMSNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRE 257
++ +A +D ++ V + A +++ + +Y+ V +H + +
Sbjct: 200 LEAIA-AGKDDEARTAPVLSDVEALARSLEQTIDMLDRTSEYVGAVLDEEREPSHALGQY 258
Query: 258 LNALRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVNKFNVLFDK 313
L P +D+ + + DF DV +++YL + DL Q + N L DK
Sbjct: 259 LMNNLSLAPKVDSVSIEHDFNNHIQDVLMVSYLTNTIRTQVDLAQRLALAN-LTDK 313
>sp|B0X2G0|EIF3F_CULQU Eukaryotic translation initiation factor 3 subunit F OS=Culex
quinquefasciatus GN=eIF3-S5 PE=3 SV=1
Length = 287
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 117/273 (42%), Gaps = 16/273 (5%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVY----NIIED 94
V +HP+V+ I + Y RR A + VIG L+G +E+ N F + + + +E
Sbjct: 12 VRVHPVVLFQIVDAYERRNADSER---VIGTLLGSVEKGIVEVTNCFCVPHKEHADQVEA 68
Query: 95 EMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLNP 154
E+ D Y L ++V + +GW+ TG V +H+ +PI L L+
Sbjct: 69 ELGYASDLYDLN----RRVNPSENIVGWWATGQEVTNHSSVIHEYYARECNNPIHLTLDT 124
Query: 155 HPIHSNLPVSVYESI-IDLVGGEATMLFIELPYTIITEEAERMGVDHVAR----MSNNDS 209
+ + + Y + + + GG+ +F + + + E E +G+ A+ SN
Sbjct: 125 SLTAARMGIKAYVCVSLGVPGGKTGCMFTPINVEVTSYEPEVVGLSLCAKTIGVQSNPAR 184
Query: 210 GESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLD 269
+ L A L + +L+Y+++V + ++ + R L L H +P +
Sbjct: 185 PRTVSPMLDLAQVSEASGKLQTLLGEVLNYVEDVLAEKQQPDNFVGRALLDLIHSVPNMK 244
Query: 270 NPAFKTDFYTQCNDVALITYLGTITKGCNDLNQ 302
+ F F + D+ ++ L + K LN+
Sbjct: 245 HEEFAKMFNSNVKDLLMVVTLSQLIKTQLQLNE 277
>sp|B4II46|EI3F2_DROSE Eukaryotic translation initiation factor 3 subunit F-2
OS=Drosophila sechellia GN=eIF3-S5-2 PE=3 SV=1
Length = 285
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 124/274 (45%), Gaps = 11/274 (4%)
Query: 29 MAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELV 88
M++ ++ V L PLV+ I + Y RR + QV+G L+G +EI N F +
Sbjct: 1 MSRNLSIRAKVFLKPLVLFQIIDAYDRRPKGDN---QVMGTLLGRTKEDHIEITNCFTVP 57
Query: 89 YNIIEDEMIINRDYYTLKEEQFKQVFC--DLDFLGWYTTGDTVNELDIKVHK-QICEINE 145
+ + I+ D E +F + LGW+ TG +V+ +H + E E
Sbjct: 58 HKEHSENKRIDLDMAYASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDYYVRECGE 117
Query: 146 -SPIFLKLNPHPIHSNLPVSVYESI-IDLVGGEATMLFIELPYTIITEEAERMGVDHVAR 203
P+ L ++ + L +Y ++ + + GG ++F +P I +E ++ + V + +
Sbjct: 118 RQPLHLLVDASLKNQRLSTRLYCAVEMGVPGGTKGLMFSLVPLEISSENSDLVAVRCIEK 177
Query: 204 MSNNDSGE--SSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNAL 261
S + + V E L +A + + R+ +LL Y+ +V + ++ + R L A
Sbjct: 178 QSQQQASKQMERFVPE-LVQVVDATRNIQQRLDLLLRYINDVLARKKKPDNLVGRSLQAA 236
Query: 262 RHRLPVLDNPAFKTDFYTQCNDVALITYLGTITK 295
+P+ D+ F+ F T D+ + L T+ K
Sbjct: 237 LTAVPLFDSEKFRLMFNTNVRDMLMAITLSTMIK 270
>sp|Q7QD36|EIF3F_ANOGA Eukaryotic translation initiation factor 3 subunit F OS=Anopheles
gambiae GN=eIF3-S5 PE=3 SV=3
Length = 287
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 117/276 (42%), Gaps = 16/276 (5%)
Query: 36 SIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVY----NI 91
++ V +HP+V+ I + Y RR A + VIG L+G +E+ N F L + +
Sbjct: 9 NLTVRVHPVVLFQIVDAYERRNADSER---VIGTLLGSVDKGVVEVTNCFCLPHKEHTDQ 65
Query: 92 IEDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLK 151
+E E+ D Y L + +V + +GW+ TG V +H+ +P+ L
Sbjct: 66 VEAELGYASDLYELNQ----RVNASENIVGWWATGQEVTNHSSVIHEYYARECTNPVHLT 121
Query: 152 LNPHPIHSNLPVSVYESI-IDLVGGEATMLFIELPYTIITEEAERMGVD----HVARMSN 206
L+ + + + Y + + + GG++ +F + + + E E +G+ + SN
Sbjct: 122 LDTSLTGARMGIKAYVCVSLGVPGGKSGCMFTPINVEVTSYEPEIVGLQLCMKTIGVQSN 181
Query: 207 NDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLP 266
+ L +A L + +L Y+++V S + + R L L H +P
Sbjct: 182 PSRPRTVSPMLDLAQVTDASDKLLALLSDVLAYVEDVLSEKQQPENTVGRALLDLIHSVP 241
Query: 267 VLDNPAFKTDFYTQCNDVALITYLGTITKGCNDLNQ 302
+ F F + D+ ++ L + K LN+
Sbjct: 242 NMTGDQFAQMFNSNVKDLLMVVTLSQLIKTQLQLNE 277
>sp|B4JGX4|EI3F1_DROGR Eukaryotic translation initiation factor 3 subunit F-1
OS=Drosophila grimshawi GN=eIF3-S5-1 PE=3 SV=1
Length = 280
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 119/272 (43%), Gaps = 15/272 (5%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVY----NIIED 94
V +HP+V+ + + + RR A + VIG L+G +E+ N F + + + +E
Sbjct: 8 VRVHPVVLFQVVDAFERRNADSHR---VIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA 64
Query: 95 EMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLNP 154
E+ D Y L ++V + +GW+ TG+ V +H+ +P+ L ++
Sbjct: 65 ELSYALDMYDLN----RKVNSNESVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDT 120
Query: 155 HPIHSNLPVSVYESI-IDLVGGEATMLFIELPYTIITEEAERMGVDHVARMSNNDSGESS 213
+ + Y I + + GG+ +F +P + + E E G+ + + +
Sbjct: 121 SLQGGRMGLRAYVCIQLGVPGGKTGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPAQRP 180
Query: 214 LVAEHL--TAQYN-AIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDN 270
+ AQ + A + L + ++L Y+ +V + + ++ + R+L L H +P + +
Sbjct: 181 KTVPPMLDLAQISEASQKLQSLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTH 240
Query: 271 PAFKTDFYTQCNDVALITYLGTITKGCNDLNQ 302
F F D+ ++ L + K LN+
Sbjct: 241 EQFTQMFNANVRDLLMVITLSQLIKTQLQLNE 272
>sp|B4MR33|EI3F2_DROWI Eukaryotic translation initiation factor 3 subunit F-2
OS=Drosophila willistoni GN=eIF3-S5-2 PE=3 SV=1
Length = 286
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 118/267 (44%), Gaps = 18/267 (6%)
Query: 41 LHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRK--LEIKNSFELVY------NII 92
L PLV+++I + Y RR QVIG L+G LEI N F L++ + I
Sbjct: 13 LQPLVLLHIIDAYERR---PKDCTQVIGTLLGRNNPESGHLEISNCFTLLHKDYPNSDRI 69
Query: 93 EDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICE--INESPIFL 150
+ ++ D Y L + + Q +GWY TG V+ + +H+ + +P+ L
Sbjct: 70 DVDLQYANDMYELNQLTYPQE----KIIGWYATGKEVSRSAVNLHEYYARECADGNPMHL 125
Query: 151 KLNPHPIHSNLPVSVYESII-DLVGGEATMLFIELPYTIITEEAERMGVDHVARMSNNDS 209
++ + + +Y +++ + G ++F LP + + E + ++ + + + +
Sbjct: 126 LIDTSLRGQRMMMRLYTAVVMGVPNGTKGLMFSLLPVEMSSGNPESVALNLMKKNALQPT 185
Query: 210 GESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLD 269
+ + L + + L ++ ++L Y+ E + N+ + R L+ +P++D
Sbjct: 186 KQVGRILPELVQVVDITRDLQTKLDLVLRYVNETLARKRTPNNTVGRALHDALTSVPLVD 245
Query: 270 NPAFKTDFYTQCNDVALITYLGTITKG 296
+F+ F D+ + L T+ K
Sbjct: 246 AESFRMMFNANVRDMLMSITLATMIKA 272
>sp|B4LZ60|EI3F1_DROVI Eukaryotic translation initiation factor 3 subunit F-1
OS=Drosophila virilis GN=eIF3-S5-1 PE=3 SV=1
Length = 280
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 119/272 (43%), Gaps = 15/272 (5%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVY----NIIED 94
V +HP+V+ + + + RR A + VIG L+G +E+ N F + + + +E
Sbjct: 8 VRVHPVVLFQVVDAFERRNADSHR---VIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA 64
Query: 95 EMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLNP 154
E+ D Y L ++V + +GW+ TG+ V +H+ +P+ L ++
Sbjct: 65 ELSYALDMYDLN----RKVNANESVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDT 120
Query: 155 HPIHSNLPVSVYESI-IDLVGGEATMLFIELPYTIITEEAERMGVDHVAR---MSNNDSG 210
+ + Y I + + GG+ +F +P + + E E G+ + + +S
Sbjct: 121 SLQGGRMGLRAYVCIQLGVPGGKTGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPAHRP 180
Query: 211 ESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDN 270
++ L A L ++++L Y+ +V + + ++ + R+L L H +P + +
Sbjct: 181 KTVPPMLDLAQISEASTKLQSLLELILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTH 240
Query: 271 PAFKTDFYTQCNDVALITYLGTITKGCNDLNQ 302
F F D+ ++ L + K LN+
Sbjct: 241 EQFTQMFNANVRDLLMVITLSQLIKTQLQLNE 272
>sp|B4NYU1|EI3F2_DROYA Eukaryotic translation initiation factor 3 subunit F-2
OS=Drosophila yakuba GN=eIF3-S5-2 PE=3 SV=2
Length = 285
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 124/278 (44%), Gaps = 19/278 (6%)
Query: 29 MAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELV 88
M++ + V + PLV+ I + Y RR + QV+G L+G EI N F +
Sbjct: 1 MSRNFSMQAKVFIKPLVLFQIIDAYERRPKGDN---QVMGTLLGRNKEGHFEITNCFPVP 57
Query: 89 YNIIEDEMIINR-DYYTLKEEQFKQV----FCDLDFLGWYTTGDTVNELDIKVH----KQ 139
+ ++ INR D +F ++ + + LGW++TG +V+ +H ++
Sbjct: 58 H---KEHPEINRIDLDISYASEFLELNMLTYSNERVLGWFSTGKSVSRSASLLHDYYARE 114
Query: 140 ICEINESPIFLKLNPHPIHSNLPVSVYESI-IDLVGGEATMLFIELPYTIITEEAERMGV 198
EI P+ L ++ L +Y ++ I + GG ++F +P I ++ + +
Sbjct: 115 CGEIQ--PVHLVMDATLKSQRLSTRLYCAVEIGVPGGTKGLMFSLVPLEISNGNSDLVAL 172
Query: 199 DHVARMS-NNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRE 257
+ + S + + L +A + + R+ ++L Y+ +V + ++ I R
Sbjct: 173 RSLEKQSLQQGTKQMERFLPELVQVVDATRDIQQRLDLVLRYINDVLARKRKPDNVIGRA 232
Query: 258 LNALRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITK 295
L A +P+LD+ F+ F T D+ + L T+ K
Sbjct: 233 LYAALTAVPLLDSEKFRLMFNTNLRDMLMAITLSTMIK 270
>sp|B3M123|EI3F1_DROAN Eukaryotic translation initiation factor 3 subunit F-1
OS=Drosophila ananassae GN=eIF3-S5-1 PE=3 SV=1
Length = 280
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 120/272 (44%), Gaps = 15/272 (5%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVY----NIIED 94
V +HP+V+ + + Y RR A + VIG L+G +E+ N F + + + +E
Sbjct: 8 VRVHPVVLFQVVDAYERRNADSHR---VIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA 64
Query: 95 EMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLNP 154
E+ D Y L ++V + +GW+ TG+ V +H+ +P+ L ++
Sbjct: 65 ELSYALDMYDLN----RKVNPNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDT 120
Query: 155 HPIHSNLPVSVYESI-IDLVGGEATMLFIELPYTIITEEAERMGVDHVAR---MSNNDSG 210
+ + Y I + + GG++ +F +P + + E E G+ + + +S
Sbjct: 121 SLQGGRMGLRAYVCIQLGVPGGKSGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPAHRP 180
Query: 211 ESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDN 270
++ L A + L + ++L Y+ +V + + ++ + R+L L H +P + +
Sbjct: 181 KTVPPMLDLAQISEASQKLQQLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTH 240
Query: 271 PAFKTDFYTQCNDVALITYLGTITKGCNDLNQ 302
F F ++ L+ L + K LN+
Sbjct: 241 EQFTQMFNANVRNLLLVITLSQLIKTQLQLNE 272
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,222,530
Number of Sequences: 539616
Number of extensions: 5289932
Number of successful extensions: 13508
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 13339
Number of HSP's gapped (non-prelim): 117
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)