Query psy401
Match_columns 326
No_of_seqs 155 out of 720
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 23:03:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_U RPN8, 26S proteasome re 100.0 5.4E-66 1.9E-70 494.8 26.5 269 35-307 4-295 (338)
2 4e0q_A COP9 signalosome comple 100.0 2.2E-42 7.6E-47 292.1 12.0 139 32-170 1-140 (141)
3 2o95_A 26S proteasome non-ATPa 100.0 3.3E-40 1.1E-44 291.4 21.9 174 34-208 5-183 (187)
4 4b4t_V 26S proteasome regulato 100.0 6.2E-31 2.1E-35 248.4 16.7 238 34-285 22-296 (306)
5 2znr_A AMSH-like protease; met 99.2 1.4E-10 4.8E-15 101.0 13.6 123 36-170 8-135 (178)
6 3rzv_A STAM-binding protein; u 99.1 3.7E-09 1.3E-13 94.2 15.1 123 35-170 40-168 (211)
7 2kks_A Uncharacterized protein 98.8 1.7E-07 6E-12 78.6 14.4 131 39-190 2-137 (146)
8 2kcq_A MOV34/MPN/PAD-1 family; 98.5 2.3E-07 7.8E-12 78.5 7.8 131 40-190 2-141 (153)
9 1oi0_A AF2198, hypothetical pr 97.6 0.00028 9.7E-09 57.1 8.9 104 39-168 4-111 (124)
10 2p8r_A PRP8, PRE-mRNA-splicing 93.8 0.15 5.2E-06 46.5 7.6 107 48-170 46-169 (273)
11 2og4_A PRE-mRNA-splicing facto 91.5 0.42 1.4E-05 43.1 7.1 109 48-170 45-166 (254)
12 3sbg_A PRE-mRNA-splicing facto 88.7 0.52 1.8E-05 46.5 5.6 95 63-170 368-477 (565)
13 2rh2_A Dihydrofolate reductase 69.8 1.5 5.1E-05 29.5 1.0 13 117-129 24-36 (62)
14 2akf_A Coronin-1A; coiled coil 67.6 13 0.00044 22.0 4.6 28 215-242 4-31 (32)
15 1wrd_A TOM1, target of MYB pro 64.0 44 0.0015 25.5 8.6 87 217-311 6-93 (103)
16 1oxz_A ADP-ribosylation factor 63.4 66 0.0023 27.3 10.4 86 219-312 71-159 (186)
17 1naf_A ADP-ribosylation factor 57.8 74 0.0025 26.3 9.5 86 219-312 55-143 (158)
18 1o3x_A ADP-ribosylation factor 54.8 83 0.0029 25.4 9.8 86 219-312 46-134 (140)
19 1wr6_A ADP-ribosylation factor 30.7 35 0.0012 26.6 3.1 78 227-312 11-90 (111)
20 2p6v_A Transcription initiatio 25.2 1.4E+02 0.0046 23.3 5.4 34 250-283 38-73 (114)
No 1
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-66 Score=494.77 Aligned_cols=269 Identities=24% Similarity=0.475 Sum_probs=182.1
Q ss_pred CceEEEEehhhHhhHHHHHhHhcccCCCCceEEEEEeeEEeCCEEEEEEEEeeccccccc---chhhhHHHHHHHHHHHH
Q psy401 35 GSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIED---EMIINRDYYTLKEEQFK 111 (326)
Q Consensus 35 ~~~~V~IHPlVll~I~dH~~R~~~~~~~~~~viG~LLG~~~~~~veI~nsF~vp~~e~~~---~~~iD~~y~~~m~~l~k 111 (326)
...+|.|||||||+|+|||+|.+.+ .+.||+|+|||.++|+.|||+|||++|++++++ .|++|.+|+++|+++||
T Consensus 4 ~~~~V~vhPlVll~I~dH~~R~~~~--~~~rViG~LLG~~~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~k 81 (338)
T 4b4t_U 4 QHEKVTIAPLVLLSALDHYERTQTK--ENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCK 81 (338)
T ss_dssp CCSEEEECHHHHHHHHHHHHHHTTT--CCSCCEEEEEEEECSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHH
T ss_pred CCCEEEEecHHHHHHHHHHHHhhcC--CCCeEEEEEEeEEcCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHh
Confidence 3468999999999999999996543 357999999999999999999999999988653 46899999999999999
Q ss_pred HhCCCCceeEEEecCCCCChhhHHHHHHHHhhCC-CceEEEEcCCCCCCCCCeeeeeeeeeccC--CcccceeEEeeEEE
Q psy401 112 QVFCDLDFLGWYTTGDTVNELDIKVHKQICEINE-SPIFLKLNPHPIHSNLPVSVYESIIDLVG--GEATMLFIELPYTI 188 (326)
Q Consensus 112 ~V~p~~~iVGWY~tg~~~~~~d~~ih~~~~~~~~-~pI~L~vD~~~~~~~lpi~ay~~~~~~~~--~~~~~~f~~i~~~i 188 (326)
+|||++.+||||+||+.+++.|+.||++|+++++ +|++|++|+...++++|+++|++.....+ ...+..|.++|++|
T Consensus 82 kV~~~e~iVGWY~tg~~~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~~~~lpi~aY~s~~~~~~~~~~~~~~F~~lp~~i 161 (338)
T 4b4t_U 82 KINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQGVGLPTDAYVAIEQVKDDGTSTEKTFLHLPCTI 161 (338)
T ss_dssp HHCCSCEEEEEEECCSSCCSTHHHHHHHHGGGCCSCCCEEEECSCCCSSSCSEEEEEEEEECSSCSTTCEEEEEEECEEE
T ss_pred hcCccCCEEEEEecCCCCCccHHHHHHHHHhccCCCcEEEEecCCCCCCCcceEEEEeehhccCCCcccccEEEEeeeEe
Confidence 9999999999999999999999999999999985 89999999999989999999998765432 23567899999999
Q ss_pred ecChHHHHHHHHHhhccCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhcCCCC
Q psy401 189 ITEEAERMGVDHVARMSNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVL 268 (326)
Q Consensus 189 ~~~eaErI~vd~l~~~~~~~~~~~~~l~~~l~~~~~ai~~L~~~i~~i~~Yl~~V~~G~~~~d~~ilR~i~~lv~~lP~~ 268 (326)
+++|+|||||+++++.....+ .+.+..++..+.+++++|..||+.|++||++|.+|++++|++|||+|+++|+++|.+
T Consensus 162 ~~~eaE~Igv~~l~r~~~~~~--~~~l~~~l~~~~~al~~L~~~l~~i~~Yl~~V~~g~~~~n~~ilr~l~~~~~~lP~l 239 (338)
T 4b4t_U 162 EAEEAEEIGVEHLLRDVRDQA--AGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQDVFNLLPNL 239 (338)
T ss_dssp CSCHHHHHHHHHHHHHHSSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred ecCcHHHHHHHHHHhccccCc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhCCcC
Confidence 999999999999999875432 345677899999999999999999999999999999999999999999999999998
Q ss_pred Ch-----------------hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy401 269 DN-----------------PAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVNKF 307 (326)
Q Consensus 269 ~~-----------------~~f~~~~~~~~~D~lmv~yLa~ltk~~~~l~~~~~k~ 307 (326)
+. ++|+++|+.+.||+|||+|||+|+|+|++|+++++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~f~~~f~~~~nD~Lmv~YLs~L~rs~~al~eli~nk 295 (338)
T 4b4t_U 240 GTPDDDEIDVENHDRINISNNLQKALTVKTNDELMVIYISNLVRSIIAFDDLIENK 295 (338)
T ss_dssp --------------------------------------------------------
T ss_pred CcccccccccccccccchhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 4589999999999999999999999999999999754
No 2
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-42 Score=292.12 Aligned_cols=139 Identities=60% Similarity=0.981 Sum_probs=115.6
Q ss_pred CCCCceEEEEehhhHhhHHHHHhHhcccCCCCceEEEEEeeEEeCCEEEEEEEEeecccccccchhhhHHHHHHHHHHHH
Q psy401 32 GVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMIINRDYYTLKEEQFK 111 (326)
Q Consensus 32 ~~~~~~~V~IHPlVll~I~dH~~R~~~~~~~~~~viG~LLG~~~~~~veI~nsF~vp~~e~~~~~~iD~~y~~~m~~l~k 111 (326)
|++++.+|+|||||||+|+|||+|.+.+.+.+.+|+|+|||.++|++|||+|||++|++++++++.+|.+|+++|+++||
T Consensus 1 ~~~~~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~~~~~~~~d~~y~~~m~~~~k 80 (141)
T 4e0q_A 1 GSHMSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETVINKDYYNKKEQQYK 80 (141)
T ss_dssp ----CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETTEEEEEEEEECCEEEETTEEEECHHHHHHHHHHHH
T ss_pred CCCCcEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCCEEEEEEEEEecccCCCCceeecHHHHHHHHHHHH
Confidence 35778999999999999999999976554557899999999999999999999999999888889999999999999999
Q ss_pred HhCCCCceeEEEecCCCCChhhHHHHHHHHhhCCCceEEEEcCCCCC-CCCCeeeeeeee
Q psy401 112 QVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLNPHPIH-SNLPVSVYESII 170 (326)
Q Consensus 112 ~V~p~~~iVGWY~tg~~~~~~d~~ih~~~~~~~~~pI~L~vD~~~~~-~~lpi~ay~~~~ 170 (326)
+|||++.+||||++|+.++..|+.||++|++++++||+|++||.++. ++||++||+++.
T Consensus 81 ~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~~g~Lp~~ay~sv~ 140 (141)
T 4e0q_A 81 QVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPLSRSVDHLPLKLFESLI 140 (141)
T ss_dssp HHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEESCSCCCCTTHHHHHHCC--
T ss_pred HhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEECCCccCCCeEEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999876 469999999753
No 3
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=100.00 E-value=3.3e-40 Score=291.42 Aligned_cols=174 Identities=25% Similarity=0.478 Sum_probs=153.0
Q ss_pred CCceEEEEehhhHhhHHHHHhHhcccCCCCceEEEEEeeEEeCCEEEEEEEEeeccccccc---chhhhHHHHHHHHHHH
Q psy401 34 TGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIED---EMIINRDYYTLKEEQF 110 (326)
Q Consensus 34 ~~~~~V~IHPlVll~I~dH~~R~~~~~~~~~~viG~LLG~~~~~~veI~nsF~vp~~e~~~---~~~iD~~y~~~m~~l~ 110 (326)
.+..+|+|||+|+++|+|||+|.+.+ +.+.+|+|+|||.+.++.++|+|||++|+.++++ .+.+|.+|+++|++++
T Consensus 5 ~~~~~V~i~plvllkI~~H~~r~~~~-~~~~~V~G~LLG~~~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~ 83 (187)
T 2o95_A 5 LAVQKVVVHPLVLLSVVDHFNRIGKV-GNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMF 83 (187)
T ss_dssp CSCSEEEECHHHHHHHHHHHHHHHHT-TCCSCCEEEEEEEESSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHH
T ss_pred CCCCEEEEchHHHHHHHHHHhhhccc-CCCcEEEEEEEEEEcCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHH
Confidence 44578999999999999999998431 2468999999999999999999999999987654 3589999999999999
Q ss_pred HHhCCCCceeEEEecCCCCChhhHHHHHHHHhhCCCceEEEEcCCCCCCCCCeeeeeeeeeccC-C-cccceeEEeeEEE
Q psy401 111 KQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLNPHPIHSNLPVSVYESIIDLVG-G-EATMLFIELPYTI 188 (326)
Q Consensus 111 k~V~p~~~iVGWY~tg~~~~~~d~~ih~~~~~~~~~pI~L~vD~~~~~~~lpi~ay~~~~~~~~-~-~~~~~f~~i~~~i 188 (326)
++++|++.+||||++++..+..|..||++|++++++|++|++||....+++|+++|++.....+ + .....|.++|++|
T Consensus 84 ~~v~~~~~iVGWY~s~~~~s~~d~~i~~~~~~~~~~~v~Livd~~~~~~~l~i~ay~~~~~~~~~~~~~~~~F~~ip~~I 163 (187)
T 2o95_A 84 KKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEI 163 (187)
T ss_dssp HTTSSSCEEEEEEECCSSCCTTHHHHHHHHTTTCTTCEEEEECCCTTC-CCSEEEEEEEEECC----CCEEEEEEEEEEE
T ss_pred HHhCCCCCEEEEEcCCCcCCcccHHHHHHHHhcCCCCEEEEECCCCCCCCcCeEEEEEechhcCCCCcccCEEEEeeEEE
Confidence 9999999999999999999999999999999999999999999988766799999999765432 2 3467899999999
Q ss_pred ecChHHHHHHHHHhhccCCC
Q psy401 189 ITEEAERMGVDHVARMSNND 208 (326)
Q Consensus 189 ~~~eaErI~vd~l~~~~~~~ 208 (326)
+++|||||||+|+++.....
T Consensus 164 ~~~eaE~i~v~~l~~~~~~~ 183 (187)
T 2o95_A 164 GAEEAEEVGVEHLLRDIKDT 183 (187)
T ss_dssp CCCHHHHHHHHHHHHHCCSC
T ss_pred ecCcHHHHHHHHHHhcCCCc
Confidence 99999999999999988653
No 4
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.2e-31 Score=248.38 Aligned_cols=238 Identities=12% Similarity=0.172 Sum_probs=183.0
Q ss_pred CCceEEEEehhhHhhHHHHHhHhcccCCCCceEEEEEeeEE-eCCEEEEEEEEeecccccccch-hhhHHHHHHHHHHHH
Q psy401 34 TGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQ-VGRKLEIKNSFELVYNIIEDEM-IINRDYYTLKEEQFK 111 (326)
Q Consensus 34 ~~~~~V~IHPlVll~I~dH~~R~~~~~~~~~~viG~LLG~~-~~~~veI~nsF~vp~~e~~~~~-~iD~~y~~~m~~l~k 111 (326)
.+..+|+|+|+|||+|++|+.+. .+..|+|+|||.. +++.++|+|||++|+.++++++ .+|.+|+.+|+++++
T Consensus 22 ~~~~~V~is~lallkm~~Ha~~~-----~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~m~~~~~ 96 (306)
T 4b4t_V 22 DTKETVYISSIALLKMLKHGRAG-----VPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLK 96 (306)
T ss_dssp SSCCEEEECHHHHHHHHHHTCSC-----SSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCCHHHHHHHHHHHH
T ss_pred CCCCEEEEeHHHHHHHHHHhcCC-----CCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCCHHHHHHHHHHHH
Confidence 45688999999999999999542 4679999999985 4678999999999998877665 689999999999999
Q ss_pred HhCCCCceeEEEecCCC----CChhhHHHHHHHHhhCCCceEEEEcCCCC-CCCCCeeeeeeeeecc---C---------
Q psy401 112 QVFCDLDFLGWYTTGDT----VNELDIKVHKQICEINESPIFLKLNPHPI-HSNLPVSVYESIIDLV---G--------- 174 (326)
Q Consensus 112 ~V~p~~~iVGWY~tg~~----~~~~d~~ih~~~~~~~~~pI~L~vD~~~~-~~~lpi~ay~~~~~~~---~--------- 174 (326)
++++++.+||||++++. ++..|+..|..|+..++++|+|++||..+ .|+++++||++..... +
T Consensus 97 ~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~~G~~~i~Afr~~~~~~~~~~~~~~~~~s~ 176 (306)
T 4b4t_V 97 QTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLEPRQTTSN 176 (306)
T ss_dssp HHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSSSCSSCEEEEECCHHHHHHCCCCCSCC---
T ss_pred HhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCCCCceeeeEEEecCccccccccCccccccc
Confidence 99999999999999864 57889999999999999999999999765 4789999999863210 0
Q ss_pred -C------------cccceeEEeeEEEecChHHHHHHHHHhhccCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy401 175 -G------------EATMLFIELPYTIITEEAERMGVDHVARMSNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLK 241 (326)
Q Consensus 175 -~------------~~~~~f~~i~~~i~~~eaErI~vd~l~~~~~~~~~~~~~l~~~l~~~~~ai~~L~~~i~~i~~Yl~ 241 (326)
+ .....|.++++++..++.|+..++.+.+..-. ..-.+...........+.+.++++.+.+|.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~---~~l~~~~~~~~~~~~~~~i~~m~~~~~~y~k 253 (306)
T 4b4t_V 177 TGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQ---SGLKMYDYEEKEESNLAATKSMVKIAEQYSK 253 (306)
T ss_dssp -------------------CEEECSCCCCCSSCTHHHHHHHHC-------------CHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred ccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccc---cccccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01245999999999999999999999875421 1111223344566778889999999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHHhcCCCCCh-----hHHHHHHHhhhhhHH
Q psy401 242 EVESGTLPVNHDILRELNALRHRLPVLDN-----PAFKTDFYTQCNDVA 285 (326)
Q Consensus 242 ~V~~G~~~~d~~ilR~i~~lv~~lP~~~~-----~~f~~~~~~~~~D~l 285 (326)
.|.+++...+.++. ...++++++ +.++..+++++.++|
T Consensus 254 ~v~~e~~~~~~~l~------~~~vgk~dp~~~l~~~~~~l~~~ni~~~l 296 (306)
T 4b4t_V 254 RIEEEKELTEEELK------TRYVGRQDPKKHLSETADETLENNIVSVL 296 (306)
T ss_dssp HHHHHHHHHHHHHH------HTCSCSSCCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHccccCCHHHHH------hhccCccChHHHHHHHHHHHHHHHHHHHH
Confidence 99988755555543 566788876 555666666555543
No 5
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.22 E-value=1.4e-10 Score=101.00 Aligned_cols=123 Identities=15% Similarity=0.091 Sum_probs=94.5
Q ss_pred ceEEEEehhhHhhHHHHHhHhcccCCCCceEEEEEeeEEeCCEEEEEEEEeecccccccchh-hhHHHHHHHHHHHHHhC
Q psy401 36 SIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMI-INRDYYTLKEEQFKQVF 114 (326)
Q Consensus 36 ~~~V~IHPlVll~I~dH~~R~~~~~~~~~~viG~LLG~~~~~~veI~nsF~vp~~e~~~~~~-iD~~y~~~m~~l~k~V~ 114 (326)
-..|.|-..++.+|+.|+.++.. .+..++|.|+|...++..+|+++|++|...+++.+. .|.+- .++. ...
T Consensus 8 ~~~v~i~~~~l~k~l~hA~~~~~---~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~~~~e---~~~~--~~~ 79 (178)
T 2znr_A 8 LRCVVLPEDLCHKFLQLAESNTV---RGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEE---LFNV--QDQ 79 (178)
T ss_dssp CCCEEEETTHHHHHHHHHHHHHT---TTCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEECCHHH---HHHH--HHH
T ss_pred cEEEEECHHHHHHHHHHHHhCCC---CCceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccCCHHH---HHHH--HHh
Confidence 45689999999999999987631 135799999999998899999999999876544443 22221 1111 344
Q ss_pred CCCceeEEEecCC----CCChhhHHHHHHHHhhCCCceEEEEcCCCCCCCCCeeeeeeee
Q psy401 115 CDLDFLGWYTTGD----TVNELDIKVHKQICEINESPIFLKLNPHPIHSNLPVSVYESII 170 (326)
Q Consensus 115 p~~~iVGWY~tg~----~~~~~d~~ih~~~~~~~~~pI~L~vD~~~~~~~lpi~ay~~~~ 170 (326)
.++.+||||+|.+ .++..|+..|..|+...+..|+++++|... .+++|+...
T Consensus 80 ~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~----~~~afrl~~ 135 (178)
T 2znr_A 80 HDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK----DTGIFRLTN 135 (178)
T ss_dssp HTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT----EEEEEEECH
T ss_pred CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC----cceEEEEEC
Confidence 6899999999975 578899998988888878889999999863 379998763
No 6
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.05 E-value=3.7e-09 Score=94.20 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=93.0
Q ss_pred CceEEEEehhhHhhHHHHHhHhcccCCCCceEEEEEeeEEeCCEEEEEEEEeecccccccchhh-h-HHHHHHHHHHHHH
Q psy401 35 GSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMII-N-RDYYTLKEEQFKQ 112 (326)
Q Consensus 35 ~~~~V~IHPlVll~I~dH~~R~~~~~~~~~~viG~LLG~~~~~~veI~nsF~vp~~e~~~~~~i-D-~~y~~~m~~l~k~ 112 (326)
+-..|.|-.-++-+|+.|...+-. .+..++|.|+|...++.++|+++|..|...+++.+.. + .+.++-+.+
T Consensus 40 ~lr~v~Ipk~ll~kfL~~A~~~tp---~~~EvcGlL~Gk~~~~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~~~~~---- 112 (211)
T 3rzv_A 40 GLRHVVVPGRLCPQFLQLASANTA---RGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQ---- 112 (211)
T ss_dssp TBCCEEEETTHHHHHHHHHHHHHH---TTCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCHHHHHHHHHH----
T ss_pred ccEEEEECHHHHHHHHHHHHhCCC---CCceEEEEEEeEcCCCCEEEEEEEeCCccCCCCceeccChHHHHHHHhh----
Confidence 346788999999999999977521 1357999999999999999999998887655443322 1 222221111
Q ss_pred hCCCCceeEEEecCC----CCChhhHHHHHHHHhhCCCceEEEEcCCCCCCCCCeeeeeeee
Q psy401 113 VFCDLDFLGWYTTGD----TVNELDIKVHKQICEINESPIFLKLNPHPIHSNLPVSVYESII 170 (326)
Q Consensus 113 V~p~~~iVGWY~tg~----~~~~~d~~ih~~~~~~~~~pI~L~vD~~~~~~~lpi~ay~~~~ 170 (326)
.++.+||||++.+ .++..|+..|..|+...+.-|++++||... +++||+...
T Consensus 113 --~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~~----~lgaFrLtp 168 (211)
T 3rzv_A 113 --QGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQ----ETGFFKLTD 168 (211)
T ss_dssp --HTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTTT----EEEEEEECH
T ss_pred --CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC----eeeEEEecc
Confidence 4899999999974 578899999988888777789999998743 699999864
No 7
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=98.76 E-value=1.7e-07 Score=78.60 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=92.9
Q ss_pred EEEehhhHhhHHHHHhHhcccCCCCceEEEEEeeEEeCCEEEEEEEEeeccccc-ccchhhhHHHHHHHHHHHHHhCCCC
Q psy401 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNII-EDEMIINRDYYTLKEEQFKQVFCDL 117 (326)
Q Consensus 39 V~IHPlVll~I~dH~~R~~~~~~~~~~viG~LLG~~~~~~veI~nsF~vp~~e~-~~~~~iD~~y~~~m~~l~k~V~p~~ 117 (326)
+.|...++..|..|..+. .+..++|.|+|...++...|+..|++|.... .+.+.+|.+.+.+..+...+ .++
T Consensus 2 l~i~~~~l~~i~~ha~~~-----~p~E~cGlL~G~~~~~~~~v~~~~p~~n~~~~~~~f~~dp~~~~~~~~~~~~--~g~ 74 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQA-----LPNEACGLLGGRRDGDDRWVERVYPLNNLDQSPEHFSMDPREQLTAVKDMRK--NGW 74 (146)
T ss_dssp EEEEHHHHHHHHHHHHHH-----TTSCEEEEEEEEEETTEEEEEEEECCCCCSCCSSSCCCCHHHHHHHHHHHHH--HTC
T ss_pred EEECHHHHHHHHHHHHhc-----CCcceEEEEEEEEcCCCcEEEEEEECCCcCCCCceEEECHHHHHHHHHHHHH--CCC
Confidence 568889999999998775 2678999999999988899999999995432 24467887666555544443 358
Q ss_pred ceeEEEecCC----CCChhhHHHHHHHHhhCCCceEEEEcCCCCCCCCCeeeeeeeeeccCCcccceeEEeeEEEec
Q psy401 118 DFLGWYTTGD----TVNELDIKVHKQICEINESPIFLKLNPHPIHSNLPVSVYESIIDLVGGEATMLFIELPYTIIT 190 (326)
Q Consensus 118 ~iVGWY~tg~----~~~~~d~~ih~~~~~~~~~pI~L~vD~~~~~~~lpi~ay~~~~~~~~~~~~~~f~~i~~~i~~ 190 (326)
.+||||++.+ .++..|.. . +.. +..+++++.+.. .+...+++|... ...|.++++.+..
T Consensus 75 ~ivG~~HSHP~~~~~PS~~D~~--~--~~~-~~~~~lIvs~~~-~~~~~~~af~~~--------~~~~~e~~i~~~~ 137 (146)
T 2kks_A 75 VMLGNFHSHPATPARPSAEDKR--L--AFD-PSLSYLIISLAE-PQKPVCKSFLIK--------KDGVDEEEIILKE 137 (146)
T ss_dssp EEEEEEEEESSSCSSCCHHHHT--T--CCS-SSCEEEEEECSC-SSSCEEEEEEEC--------SSCEEEECEEEES
T ss_pred EEEEEEeCCCcCCCCCCHHHHH--h--hhc-CCCeEEEEEccC-CCceEEEEEEEe--------CCeEEEEEEEEeh
Confidence 9999999976 35666653 1 111 334788887653 224568999862 2368899888754
No 8
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=98.51 E-value=2.3e-07 Score=78.49 Aligned_cols=131 Identities=11% Similarity=0.114 Sum_probs=88.7
Q ss_pred EEehhhHhhHHHHHhHhcccCCCCceEEEEEeeEEe-CCEEEEEEEEeeccc--cc-ccchhhhHHHHHHHHHHHHHhCC
Q psy401 40 SLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQV-GRKLEIKNSFELVYN--II-EDEMIINRDYYTLKEEQFKQVFC 115 (326)
Q Consensus 40 ~IHPlVll~I~dH~~R~~~~~~~~~~viG~LLG~~~-~~~veI~nsF~vp~~--e~-~~~~~iD~~y~~~m~~l~k~V~p 115 (326)
.|.+.++..|..|..+. .+..++|.|+|... ++.+.|+..|++|.. .+ ...+.+|.+.+.+..+..++-
T Consensus 2 ~i~~~~l~~i~~ha~~~-----~p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~~-- 74 (153)
T 2kcq_A 2 KTTPDILDQIRVHGADA-----YPEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYELTADDYRAADAAAQEQ-- 74 (153)
T ss_dssp BCCHHHHHHHHHHHHHH-----TTSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSCCCCSHHHHHHHHHHH--
T ss_pred EeCHHHHHHHHHHHHhc-----CCcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEEECHHHHHHHHHHHHHC--
Confidence 46678899999999875 26789999999997 788899999999875 32 234567754444444444333
Q ss_pred CCceeEEEecCC----CCChhhHHHHHHHHhhCCCceEEEEcCCCCCCC-CCeeeeeeeeeccCCcccceeEEeeEEEec
Q psy401 116 DLDFLGWYTTGD----TVNELDIKVHKQICEINESPIFLKLNPHPIHSN-LPVSVYESIIDLVGGEATMLFIELPYTIIT 190 (326)
Q Consensus 116 ~~~iVGWY~tg~----~~~~~d~~ih~~~~~~~~~pI~L~vD~~~~~~~-lpi~ay~~~~~~~~~~~~~~f~~i~~~i~~ 190 (326)
++.+||||++.+ .++..|+. . + .....+++++.+.. ++ ..+++|.... ....|.+.++.|..
T Consensus 75 g~~ivG~yHSHP~~~~~PS~~D~~--~--~-~~~~~~~lIvs~~~--~~~~~~~af~~~~------~~g~~~e~~i~v~~ 141 (153)
T 2kcq_A 75 GLDVVGVYHSHPDHPARPSATDLE--E--A-TFPGFTYVIVSVRD--GAPEALTAWALAP------DRSEFHREDIVRPD 141 (153)
T ss_dssp TCEEEEEEEECSSSSSSCCHHHHH--T--C-CCTTSEEEEEEEET--TEEEEEEEEEECT------TCSCEEEECCBCCC
T ss_pred CCeEEEEEeCCCCCCCCCCHHHHH--h--h-hcCCCeEEEEECCC--CCccEEEEEEEeC------CCCcEEEEEEEEec
Confidence 589999999986 35666642 1 1 12345788886532 22 3588888631 12468888887754
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=97.59 E-value=0.00028 Score=57.15 Aligned_cols=104 Identities=11% Similarity=0.036 Sum_probs=65.6
Q ss_pred EEEehhhHhhHHHHHhHhcccCCCCceEEEEEeeEEeCCEEEEEEEEeecccccccchhhhHHHHHHHHHHHHHhCCCCc
Q psy401 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMIINRDYYTLKEEQFKQVFCDLD 118 (326)
Q Consensus 39 V~IHPlVll~I~dH~~R~~~~~~~~~~viG~LLG~~~~~~veI~nsF~vp~~e~~~~~~iD~~y~~~m~~l~k~V~p~~~ 118 (326)
+.|...++..|..|..+. .+..++|.|+|... .|+..|++| ...+. ....|...|.. .++.
T Consensus 4 v~i~~~~l~~i~~ha~~~-----~P~E~cGlL~g~~~----~v~~~~~~p-~~~~~---~~~~f~~~~~~------~~~~ 64 (124)
T 1oi0_A 4 MKISRGLLKTILEAAKSA-----HPDEFIALLSGSKD----VMDELIFLP-FVSGS---VSAVIHLDMLP------IGMK 64 (124)
T ss_dssp CEECHHHHHHHHHHHHHH-----TTSCCEEEEEESTT----EECEEEECC-CCC----------------------CCCE
T ss_pred EEEcHHHHHHHHHHHHhc-----CCCeeEEEEecccC----EEEEEEECC-CCCCC---cCceeeeeecc------CCCE
Confidence 678889999999999875 26789999999863 788999999 43221 11122212211 5699
Q ss_pred eeEEEecCC----CCChhhHHHHHHHHhhCCCceEEEEcCCCCCCCCCeeeeee
Q psy401 119 FLGWYTTGD----TVNELDIKVHKQICEINESPIFLKLNPHPIHSNLPVSVYES 168 (326)
Q Consensus 119 iVGWY~tg~----~~~~~d~~ih~~~~~~~~~pI~L~vD~~~~~~~lpi~ay~~ 168 (326)
+||||++.+ .++..|.... .. ...+++++.+.. +...+++|..
T Consensus 65 ivG~~HSHP~~~~~PS~~D~~~~----~~-~~~~~lIvs~~~--~~~~~~~f~~ 111 (124)
T 1oi0_A 65 VFGTVHSHPSPSCRPSEEDLSLF----TR-FGKYHIIVCYPY--DENSWKCYNR 111 (124)
T ss_dssp EEEEEEEESSSCCSCCHHHHHHH----HH-SCSEEEEEETTC--CTTCEEEEET
T ss_pred EEEEEEECcCCCCccCHHHHHhh----hc-CCCEEEEEEccC--CCceEEEEec
Confidence 999999976 3566665321 12 334788876533 2245777764
No 10
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=93.85 E-value=0.15 Score=46.49 Aligned_cols=107 Identities=16% Similarity=0.303 Sum_probs=69.4
Q ss_pred hHHHHHhHhcccCCCCceEEEEEeeEEe---CCEEEEEEEEeecccccccchhh-----hHHHHHHHHHHHHHhCCCCce
Q psy401 48 NISEHYTRRRAQEGKPVQVIGALIGIQV---GRKLEIKNSFELVYNIIEDEMII-----NRDYYTLKEEQFKQVFCDLDF 119 (326)
Q Consensus 48 ~I~dH~~R~~~~~~~~~~viG~LLG~~~---~~~veI~nsF~vp~~e~~~~~~i-----D~~y~~~m~~l~k~V~p~~~i 119 (326)
||++-+..... .+..++|.|.|... .+..||+.---+|...+.+.+.. ..+|+ -++..
T Consensus 46 nllkkFi~IAD---lrTq~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~l-----------~dLe~ 111 (273)
T 2p8r_A 46 NILKKFITISD---LRTQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELL-----------RDFEP 111 (273)
T ss_dssp HHHHHHHHTSC---SSSCCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTTT-----------TTSEE
T ss_pred HHHHHHHHHhh---ccceEEEEEeccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhhh-----------ccccc
Confidence 55666665432 24679999999974 35778875555554433322211 11332 78999
Q ss_pred eEEEecCC----CCChhhHHHHHHHHhh----C-CCceEEEEcCCCCCCCCCeeeeeeee
Q psy401 120 LGWYTTGD----TVNELDIKVHKQICEI----N-ESPIFLKLNPHPIHSNLPVSVYESII 170 (326)
Q Consensus 120 VGWY~tg~----~~~~~d~~ih~~~~~~----~-~~pI~L~vD~~~~~~~lpi~ay~~~~ 170 (326)
+||=+|.+ .+++.|+..|..|+.. . +..|.+++-+.+ |...+.+|+.+.
T Consensus 112 LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsftp--gs~sl~af~LT~ 169 (273)
T 2p8r_A 112 LGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTP--GSVSLTAYKLTP 169 (273)
T ss_dssp EEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEET--TEEEEEEEEECH
T ss_pred cceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecCC--CCceeEEEEcCh
Confidence 99999964 5788999999888764 2 366887775443 345678888763
No 11
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=91.49 E-value=0.42 Score=43.12 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=69.1
Q ss_pred hHHHHHhHhcccCCCCceEEEEEeeEEe---CCEEEEEEEEeecccccccchhh-----hHHHHHHHHHHHHHhCCCCce
Q psy401 48 NISEHYTRRRAQEGKPVQVIGALIGIQV---GRKLEIKNSFELVYNIIEDEMII-----NRDYYTLKEEQFKQVFCDLDF 119 (326)
Q Consensus 48 ~I~dH~~R~~~~~~~~~~viG~LLG~~~---~~~veI~nsF~vp~~e~~~~~~i-----D~~y~~~m~~l~k~V~p~~~i 119 (326)
||++-+..... .+..++|.|.|.-. .+..||+.---+|...+.+.+.. ..+|.. --++..
T Consensus 45 nLlkkFi~IAD---~~Tq~cG~LyG~~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~---------l~dLe~ 112 (254)
T 2og4_A 45 NLLKKFIEISD---VKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPD---------TEGLEL 112 (254)
T ss_dssp HHHHHHHHTSC---SSSCCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTT---------CTTCEE
T ss_pred HHHHHHHHHhh---ccceEEEEEEccCCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchh---------hcCCEe
Confidence 55555655432 24579999999984 35677875555554333222110 011211 268899
Q ss_pred eEEEecCC----CCChhhHHHHHHHHh-hCCCceEEEEcCCCCCCCCCeeeeeeee
Q psy401 120 LGWYTTGD----TVNELDIKVHKQICE-INESPIFLKLNPHPIHSNLPVSVYESII 170 (326)
Q Consensus 120 VGWY~tg~----~~~~~d~~ih~~~~~-~~~~pI~L~vD~~~~~~~lpi~ay~~~~ 170 (326)
+||=+|.+ .+++.|+..|..|+. ..+..|.+++-+.+ |...+.+|+.+.
T Consensus 113 LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsftp--gs~sl~af~LT~ 166 (254)
T 2og4_A 113 LGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTP--GSVSLSAYNLTD 166 (254)
T ss_dssp EEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEET--TEEEEEEEEECH
T ss_pred cceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecCC--CCceeEEEEcCh
Confidence 99999964 578899999988876 44677888775543 334578888763
No 12
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=88.67 E-value=0.52 Score=46.48 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=62.0
Q ss_pred CceEEEEEeeEEe-C--CEEEEEEEEeecccccccchhhh----HH---HHHHHHHHHHHhCCCCceeEEEecCC----C
Q psy401 63 PVQVIGALIGIQV-G--RKLEIKNSFELVYNIIEDEMIIN----RD---YYTLKEEQFKQVFCDLDFLGWYTTGD----T 128 (326)
Q Consensus 63 ~~~viG~LLG~~~-~--~~veI~nsF~vp~~e~~~~~~iD----~~---y~~~m~~l~k~V~p~~~iVGWY~tg~----~ 128 (326)
..+++|.|.|... + +..||+----+|...+.+.+.+- .+ | -.++.++||-+|.+ .
T Consensus 368 rTQicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp~lp~he~~~~-----------l~dLe~LGWIHTqp~et~f 436 (565)
T 3sbg_A 368 KIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPD-----------TEGLELLGWIHTQTEELKF 436 (565)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEEECCCCCCTTSTT-----------CTTCEEEEEEEEESSCCSS
T ss_pred cceeEEEEecCCCCCCCCeEEEEEEEECCccCCCceEECCCCCccccccc-----------cccCEecceeeecCCcccc
Confidence 3579999999986 3 45677655444554443333221 11 2 26799999999864 5
Q ss_pred CChhhHHHHHHHHhhC-CCceEEEEcCCCCCCCCCeeeeeeee
Q psy401 129 VNELDIKVHKQICEIN-ESPIFLKLNPHPIHSNLPVSVYESII 170 (326)
Q Consensus 129 ~~~~d~~ih~~~~~~~-~~pI~L~vD~~~~~~~lpi~ay~~~~ 170 (326)
+++.|+..|..+...+ ++.|.+++-- ..|.+.+.||....
T Consensus 437 LSs~Dl~THakl~~~n~~~~I~itvsf--tPGS~SLsAy~LT~ 477 (565)
T 3sbg_A 437 MAASEVATHSKLFADKKRDCIDISIFS--TPGSVSLSAYNLTD 477 (565)
T ss_dssp CCHHHHHHHHHHHSSSCTTCEEEEEEE--ETTEEEEEEEEECH
T ss_pred cCHHHHHHHHHHHHhCCCCeEEEEEEe--cCCceEEEEEecCH
Confidence 7899999998777653 3445555443 34567888888764
No 13
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=69.82 E-value=1.5 Score=29.53 Aligned_cols=13 Identities=38% Similarity=0.693 Sum_probs=9.9
Q ss_pred CceeEEEecCCCC
Q psy401 117 LDFLGWYTTGDTV 129 (326)
Q Consensus 117 ~~iVGWY~tg~~~ 129 (326)
-.|||||++.-.+
T Consensus 24 g~ivgwyct~ltp 36 (62)
T 2rh2_A 24 GQIVGWYCTNLTP 36 (62)
T ss_dssp EEEEEEECCSSCS
T ss_pred ceEeEEEEccccc
Confidence 3799999986443
No 14
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=67.62 E-value=13 Score=21.99 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=22.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy401 215 VAEHLTAQYNAIKMLHVRIKILLDYLKE 242 (326)
Q Consensus 215 l~~~l~~~~~ai~~L~~~i~~i~~Yl~~ 242 (326)
+.+++..+...+++|++|++++.+-+++
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677777899999999999887764
No 15
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=63.95 E-value=44 Score=25.50 Aligned_cols=87 Identities=14% Similarity=0.207 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHhcCCCCChhHHHHHHHhhhhhHHHHHHHHHHHH
Q psy401 217 EHLTAQYNAIKMLHVRIKILLDYLKEVESGTL-PVNHDILRELNALRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITK 295 (326)
Q Consensus 217 ~~l~~~~~ai~~L~~~i~~i~~Yl~~V~~G~~-~~d~~ilR~i~~lv~~lP~~~~~~f~~~~~~~~~D~lmv~yLa~ltk 295 (326)
+++......+......++.+.+-|.....|.. +.|.+++..+.+.|.+.- +.+-+.+...-+|- +|+.+.+
T Consensus 6 eq~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~q----p~i~~li~~~~dee----~l~~lL~ 77 (103)
T 1wrd_A 6 EQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQ----QRVLELIPQIANEQ----LTEELLI 77 (103)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHH----HHHHHHHhccCCHH----HHHHHHH
Confidence 34455566677777777777777777766653 356789999988887752 34455665554554 5677777
Q ss_pred HHHHHHHHHHHhhhhh
Q psy401 296 GCNDLNQFVNKFNVLF 311 (326)
Q Consensus 296 ~~~~l~~~~~k~~~~~ 311 (326)
.--.|+.++.||..+.
T Consensus 78 ~ND~L~~vl~ry~~~~ 93 (103)
T 1wrd_A 78 VNDNLNNVFLRHERFE 93 (103)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7888888888888764
No 16
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=63.36 E-value=66 Score=27.34 Aligned_cols=86 Identities=22% Similarity=0.340 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHhcCCCCChhHHHHHHHhh-hhhHHHHHHHHHHHH
Q psy401 219 LTAQYNAIKMLHVRIKILLDYLKEVESGTLPV--NHDILRELNALRHRLPVLDNPAFKTDFYTQ-CNDVALITYLGTITK 295 (326)
Q Consensus 219 l~~~~~ai~~L~~~i~~i~~Yl~~V~~G~~~~--d~~ilR~i~~lv~~lP~~~~~~f~~~~~~~-~~D~lmv~yLa~ltk 295 (326)
+....+.+..++..++.+-+-|.....|.... |.+++..|.+.|.+.- +.+.+..... .+|- .|+.+.+
T Consensus 71 ~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~q----p~i~~Li~e~~ddee----~L~elL~ 142 (186)
T 1oxz_A 71 ISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMR----PTLFRLASDTEDNDE----ALAEILQ 142 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHH----HHHHHHHHHCCSCHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHH----HHHHHHHHHccCCHH----HHHHHHH
Confidence 34456677888888888888888887777544 8999999999998763 3455555433 3444 4577778
Q ss_pred HHHHHHHHHHHhhhhhc
Q psy401 296 GCNDLNQFVNKFNVLFD 312 (326)
Q Consensus 296 ~~~~l~~~~~k~~~~~~ 312 (326)
.--.|+.++.||..+..
T Consensus 143 ~ND~Ln~vl~kY~~~~~ 159 (186)
T 1oxz_A 143 ANDNLTQVINLYKQLVR 159 (186)
T ss_dssp HHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 88889999999987743
No 17
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=57.80 E-value=74 Score=26.32 Aligned_cols=86 Identities=22% Similarity=0.327 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-C-CHHHHHHHHHHHhcCCCCChhHHHHHHHhh-hhhHHHHHHHHHHHH
Q psy401 219 LTAQYNAIKMLHVRIKILLDYLKEVESGTLP-V-NHDILRELNALRHRLPVLDNPAFKTDFYTQ-CNDVALITYLGTITK 295 (326)
Q Consensus 219 l~~~~~ai~~L~~~i~~i~~Yl~~V~~G~~~-~-d~~ilR~i~~lv~~lP~~~~~~f~~~~~~~-~~D~lmv~yLa~ltk 295 (326)
+....+.+..+...++.+-+-|.....|... . |.+++..|.+.|.+.- +.+.+.+... -+|- .|+.+.+
T Consensus 55 ~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~q----p~i~~Li~e~~ddee----~L~elL~ 126 (158)
T 1naf_A 55 ISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMR----PTLFRLASDTEDNDE----ALAEILQ 126 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHH----HHHHHHHHHCCSCHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHH----HHHHHHHHHccCCHH----HHHHHHH
Confidence 3445567788888888888888887777643 3 8899999999998752 3455555433 3444 4577778
Q ss_pred HHHHHHHHHHHhhhhhc
Q psy401 296 GCNDLNQFVNKFNVLFD 312 (326)
Q Consensus 296 ~~~~l~~~~~k~~~~~~ 312 (326)
.--.|+.++.||..+..
T Consensus 127 ~ND~Ln~vl~kY~~~~~ 143 (158)
T 1naf_A 127 ANDNLTQVINLYKQLVR 143 (158)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 88889999999988754
No 18
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=54.77 E-value=83 Score=25.40 Aligned_cols=86 Identities=22% Similarity=0.340 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHhcCCCCChhHHHHHHHhh-hhhHHHHHHHHHHHH
Q psy401 219 LTAQYNAIKMLHVRIKILLDYLKEVESGTLPV--NHDILRELNALRHRLPVLDNPAFKTDFYTQ-CNDVALITYLGTITK 295 (326)
Q Consensus 219 l~~~~~ai~~L~~~i~~i~~Yl~~V~~G~~~~--d~~ilR~i~~lv~~lP~~~~~~f~~~~~~~-~~D~lmv~yLa~ltk 295 (326)
+......+..+...++.+-+-|.....|...+ |.+++..|.+.|.+.. +.+.+..... -+|- .|+.+.+
T Consensus 46 ~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~q----p~i~~li~e~~ddee----~l~elL~ 117 (140)
T 1o3x_A 46 ISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMR----PTLFRLASDTEDNDE----ALAEILQ 117 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHH----HHHHHHHTTCTTCHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHH----HHHHHHHHHccCCHH----HHHHHHH
Confidence 34455677777888888888888887777655 6899999999998763 3455555433 2444 3577777
Q ss_pred HHHHHHHHHHHhhhhhc
Q psy401 296 GCNDLNQFVNKFNVLFD 312 (326)
Q Consensus 296 ~~~~l~~~~~k~~~~~~ 312 (326)
.--.|+.++.||..+..
T Consensus 118 ~ND~ln~vl~kY~~~~~ 134 (140)
T 1o3x_A 118 ANDNLTQVINLYKQLVR 134 (140)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 78888999999887643
No 19
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=30.71 E-value=35 Score=26.57 Aligned_cols=78 Identities=14% Similarity=0.246 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHhcCCCCChhHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHH
Q psy401 227 KMLHVRIKILLDYLKEVESGTL-PVNHDILRELNALRHRLPVLDNPAFKTDFYTQC-NDVALITYLGTITKGCNDLNQFV 304 (326)
Q Consensus 227 ~~L~~~i~~i~~Yl~~V~~G~~-~~d~~ilR~i~~lv~~lP~~~~~~f~~~~~~~~-~D~lmv~yLa~ltk~~~~l~~~~ 304 (326)
.+++.+++.+-+-|.....|.. +.|.+++..|.+.|.+.. +.|.+...... +|- +|+.+.+.--.|+.++
T Consensus 11 e~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~q----p~i~kL~~e~~ddde----~l~elL~~ND~ln~vi 82 (111)
T 1wr6_A 11 EEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKR----RTLFKLASETEDNDN----SLGDILQASDNLSRVI 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHH----HHHHHHHHTCCTTCS----SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHH----HHHHHHHHHhccCHH----HHHHHHHHhHHHHHHH
Confidence 3334444444444445555654 456789999999998762 34555554332 343 3577788888899999
Q ss_pred HHhhhhhc
Q psy401 305 NKFNVLFD 312 (326)
Q Consensus 305 ~k~~~~~~ 312 (326)
.||..+..
T Consensus 83 ~rY~~~~~ 90 (111)
T 1wr6_A 83 NSYKTIIE 90 (111)
T ss_dssp THHHHTTT
T ss_pred HHHHHHhc
Confidence 99988754
No 20
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=25.18 E-value=1.4e+02 Score=23.35 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHhcCC--CCChhHHHHHHHhhhhh
Q psy401 250 VNHDILRELNALRHRLP--VLDNPAFKTDFYTQCND 283 (326)
Q Consensus 250 ~d~~ilR~i~~lv~~lP--~~~~~~f~~~~~~~~~D 283 (326)
..++++..+..++..|- +++.++|...+....|-
T Consensus 38 ~spev~~~Vr~LVq~Ll~~~i~~EeFt~~Lq~~lns 73 (114)
T 2p6v_A 38 QSTETAANVXELVQNLLDGXIEAEDFTSRLYRELNS 73 (114)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTC
T ss_pred cChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHcC
Confidence 57899999999987763 67888888777665554
Done!