RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy401
(326 letters)
>gnl|CDD|163694 cd08063, MPN_CSN6, Mpr1p, Pad1p N-terminal (MPN) domains without
catalytic isopeptidase activity, found in COP9
signalosome complex subunit 6. CSN6 (COP9 signalosome
subunit 6; COP9 subunit 6; MOV34 homolog, 34 kD) is one
of the eight subunits of COP9 signalosome, a highly
conserved protein complex with diverse functions,
including several important intracellular pathways such
as the ubiquitin/proteasome system, DNA repair, cell
cycle, developmental changes, and some aspects of immune
responses. CSN6 is an MPN-domain protein that directly
interacts with the MPN+-domain subunit CSN5. It is
cleaved during apoptosis by activated caspases. CSN6
processing occurs in CSN/CRL (cullin-RING Ub ligase)
complexes and is followed by the cleavage of Rbx1, the
direct interaction partner of CSN6. CSN6 cleavage
enhances CSN-mediated deneddylating activity (i.e.
cleavage of ubiquitin-like protein Nedd8 (neural
precursor cell expressed, developmentally downregulated
8)) in the cullin 1 in cells. The cleavage of Rbx1 and
increased deneddylation of cullins inactivate CRLs and
presumably stabilize pro-apoptotic factors for final
apoptotic steps. While CSN6 shows a typical MPN
metalloprotease fold, it lacks the canonical JAMM motif,
and therefore does not show catalytic isopeptidase
activity.
Length = 288
Score = 413 bits (1064), Expect = e-146
Identities = 158/288 (54%), Positives = 214/288 (74%), Gaps = 5/288 (1%)
Query: 37 IHVSLHPLVIMNISEHYTRRRAQEGK-PVQVIGALIGIQVGRKLEIKNSFELVYNIIED- 94
+ V LHPLVI+NIS+H TR RAQ P +V+GAL+G Q GR++EI+NSFEL Y+ ED
Sbjct: 1 LSVKLHPLVILNISDHITRHRAQSQSEPPRVVGALLGQQDGREIEIENSFELKYDTNEDG 60
Query: 95 EMIINRDYYTLKEEQFKQVFCDLDFLGWYTTG-DTVNELDIKVHKQICEINESPIFLKLN 153
E+++++++ + EQFKQVF DLDF+GWYTTG E D+ +HKQI EINESP+ L L+
Sbjct: 61 EIVLDKEFLETRLEQFKQVFKDLDFVGWYTTGPGGPTESDLPIHKQILEINESPVLLLLD 120
Query: 154 PHPIHS--NLPVSVYESIIDLVGGEATMLFIELPYTIITEEAERMGVDHVARMSNNDSGE 211
P S +LPV++YES+++LV GEAT+ F ELPYTI T EAER+GVDHVAR + S E
Sbjct: 121 PEANASGKDLPVTIYESVLELVDGEATLRFRELPYTIETGEAERIGVDHVARGGASGSSE 180
Query: 212 SSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDNP 271
S VA HL AQ+NAIKML+ R++++L+YLK V G +P +H ILR ++AL RLPVL +
Sbjct: 181 KSTVAAHLQAQHNAIKMLNSRVELILEYLKAVPVGEVPPDHSILRSISALCSRLPVLKSE 240
Query: 272 AFKTDFYTQCNDVALITYLGTITKGCNDLNQFVNKFNVLFDKQMLGRK 319
AF+ + + NDV L+ YL T+TKGCN LN+ V+KFNV++D++ GR+
Sbjct: 241 AFREELLAEYNDVLLVAYLATLTKGCNTLNELVDKFNVVYDRKGSGRR 288
>gnl|CDD|163693 cd08062, MPN_RPN7_8, Mpr1p, Pad1p N-terminal (MPN) domains without
catalytic isopeptidase activity, found in 19S
proteasomal subunits Rpn7 and Rpn8. This family
includes lid subunits of the 26 S proteasome regulatory
particles, Rpn7 (PSMD7; proteasome 26S non-ATPase
subunit 7; p44), and Rpn8 (PSMD8; proteasome 26S
non-ATPase subunit 8; p40; Mov34). Rpn7 is known to be
critical for the integrity of the 26 S proteasome
complex by establishing a correct lid structure. It is
necessary for the incorporation/anchoring of Rpn3 and
Rpn12 to the lid and essential for viability and normal
mitosis. Rpn7 and Rpn8 are ATP-independent components of
the 19S regulator subunit, and contain the MPN
structural motif on its N-terminal region. However,
while they show a typical MPN metalloprotease fold, they
lack the canonical JAMM motif, and therefore do not show
catalytic isopeptidase activity. It is suggested that
Rpn7 function is primarily structural.
Length = 280
Score = 133 bits (338), Expect = 3e-37
Identities = 76/265 (28%), Positives = 133/265 (50%), Gaps = 13/265 (4%)
Query: 38 HVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMI 97
V +HPLV++++ +HY R K +V+G L+G L++ NSF + + EDE
Sbjct: 2 KVVVHPLVLLSVVDHYNRVAKGTSK--RVVGVLLGSWKKGVLDVTNSFAVPFE--EDEKD 57
Query: 98 IN-----RDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKL 152
+ +Y FK+V +GWY+TG + D+ +++ +P+ + +
Sbjct: 58 PSVWFLDHNYLENMYGMFKKVNAKEKIVGWYSTGPKLRPNDLDINELFRRYCPNPVLVII 117
Query: 153 NPHPIHSNLPVSVYESI--IDLVGGEATMLFIELPYTIITEEAERMGVDHVARMSNNDSG 210
+ P LP Y ++ + G + F+ +P I EEAE +GV+H+ R D
Sbjct: 118 DVRPKDLGLPTEAYIAVEEVHDDGTPTSKTFVHVPSEIGAEEAEEVGVEHLLR-DIKDVT 176
Query: 211 ESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDN 270
S+L + +T + N++K L ++K + DYL+ V G LP+NH I+ L + + LP L+
Sbjct: 177 VSTL-STRVTNKLNSLKGLQSKLKEIKDYLQLVVEGKLPINHQIIYNLQDIFNLLPNLNL 235
Query: 271 PAFKTDFYTQCNDVALITYLGTITK 295
P F + ND L+ YL ++ +
Sbjct: 236 PELVKAFAVKTNDQMLVIYLSSLIR 260
>gnl|CDD|163695 cd08064, MPN_eIF3f, Mpr1p, Pad1p N-terminal (MPN) domains without
catalytic isopeptidase activity, found in eIF3f.
Eukaryotic translation initiation factor 3 (eIF3)
subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic
translation initiation factor 3, subunit 5 epsilon,
47kDa; Mov34/MPN/PAD-1 family protein) is an
evolutionarily non-conserved subunit of the functional
core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f,
and eIF3h, and contains the MPN domain. However, it
lacks the canonical JAMM motif, and therefore does not
show catalytic isopeptidase activity. It has been shown
that eIF3f mRNA expression is significantly decreased in
many human tumors including pancreatic cancer and
melanoma. EIF3f is a potent inhibitor of HIV-1
replication; it mediates restriction of HIV-1 expression
through several factors including the
serine/arginine-rich (SR) protein 9G8, and
cyclin-dependent kinase 11 (CDK11). EIF3f
phosphorylation by CDK11 is important in regulating its
function in translation and apoptosis. It enhances its
association with the core eIF3 subunits during
apoptosis, suggesting that eIF3f may inhibit translation
by increasing the binding to the eIF3 complex during
apoptosis. Thus, eIF3f may be an important negative
regulator of cell growth and proliferation.
Length = 265
Score = 125 bits (315), Expect = 7e-34
Identities = 69/271 (25%), Positives = 128/271 (47%), Gaps = 29/271 (10%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMII 98
V +HP+V+ +I + Y RR EG+ +VIG L+G + ++EI N F + +N ED++ +
Sbjct: 1 VRVHPVVLFSILDSYERR--NEGQE-RVIGTLLGTRSEGEVEITNCFAVPHNESEDQVAV 57
Query: 99 NRDY----YTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLNP 154
+ +Y Y L ++V +GWY TG + E +H S
Sbjct: 58 DMEYHRTMYELH----QKVNPKEVIVGWYATGSEITEHSALIHDYYSRECTSY------- 106
Query: 155 HPIH---------SNLPVSVYESI-IDLVGGEATMLFIELPYTIITEEAERMGVDHVARM 204
+PIH + + Y S + + G +F+ +P ++ EAER+ +D +A+
Sbjct: 107 NPIHLTVDTSLDDGKMSIKAYVSSPLGVPGKTLGSMFVPIPLELLYSEAERVALDLLAK- 165
Query: 205 SNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHR 264
+ S+ + L +++ L + +L Y+++V +G + ++ I R L
Sbjct: 166 TLASPSRSAPLTSDLEQLEASLEKLQEMLDRVLRYVEDVLAGKVKADNAIGRYLMDALTS 225
Query: 265 LPVLDNPAFKTDFYTQCNDVALITYLGTITK 295
+P LD F+ F + D+ ++TYL +TK
Sbjct: 226 VPKLDPEEFEKMFNSSLQDLLMVTYLSNLTK 256
>gnl|CDD|205193 pfam13012, MitMem_reg, Maintenance of mitochondrial structure and
function. This is C-terminal to the Mov24 region of the
yeast proteasomal subunit Rpn11 and seems likely to
regulate the mitochondrial fission and tubulation
processes, ie the outer mitochondrial membrane proteins.
This function appears to be unrelated to the proteasome
activity of the N-terminal region.
Length = 115
Score = 119 bits (301), Expect = 1e-33
Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 191 EEAERMGVDHVARMSNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPV 250
+EAE++GV+H+ R N S ++ L + A+K LH R+ + YL++V G LP
Sbjct: 1 QEAEQIGVEHLLRGLNRHY--YSTLSRKLELEQKALKNLHKRLWTIGLYLEDVIDGKLPP 58
Query: 251 NHDILRELNALRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVNKF 307
NH+ILR+L +L + LP DN F+ +F + ND L+ YLG + + + L++ +N
Sbjct: 59 NHEILRKLQSLLNLLPNYDNKEFEEEFNVETNDQLLVVYLGKLDRKQHALHELINNN 115
>gnl|CDD|163688 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal (MPN) domains
without catalytic isopeptidase activity (non
metal-binding); eukaryotic. This family contains MPN
(also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains
variants lacking key residues in the JAB1/MPN/Mov34
metalloenzyme (JAMM) motif and are unable to coordinate
a metal ion. Comparisons of key catalytic and metal
binding residues explain why the MPN-containing proteins
Rpn7/PSMD7, Rpn8/PSMD8, CSN6, Prp8p, and the translation
initiation factor 3 subunits f and h do not show
catalytic isopeptidase activity. It has been proposed
that the MPN domain in these proteins has a primarily
structural function. Rpn7 is known to be critical for
the integrity of the 26S proteasome complex by
establishing a correct lid structure. It is necessary
for the incorporation/anchoring of Rpn3 and Rpn12 to the
lid and essential for viability and normal mitosis. CSN6
is a highly conserved protein complex with diverse
functions, including several important intracellular
pathways such as the ubiquitin/proteasome system, DNA
repair, cell cycle, developmental changes, and some
aspects of immune responses. It cleaves ubiquitin-like
protein Nedd8 (neural precursor cell expressed,
developmentally downregulated 8)) in the cullin 1 in
cells. EIF3f s a potent inhibitor of HIV-1 replication
as well as an important negative regulator of cell
growth and proliferation. EIF3h regulates cell growth
and viability, and that over-expression of the gene may
provide growth advantage to prostate, breast, and liver
cancer cells.
Length = 157
Score = 120 bits (303), Expect = 2e-33
Identities = 56/166 (33%), Positives = 88/166 (53%), Gaps = 16/166 (9%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMII 98
V LHPLV++NIS+HYTRR+ + VIG L+G G K+E+ NSFEL ++ E+ + I
Sbjct: 1 VQLHPLVLLNISDHYTRRKYGIKR---VIGVLLGYVDGDKIEVTNSFELPFDEEEESIFI 57
Query: 99 NRDYYTLKEEQFKQVFCDLDFLGWYTTG----DTVNELDIKVHKQICEINE-SPIFLKLN 153
+ +Y + K+V+ +GWY+ G + +++ D +H Q I+E +P+ L L+
Sbjct: 58 DTEYLEKRYNLHKKVYPQEKIVGWYSIGSNNSNEISKSDNSLHSQFSLISEENPLILILD 117
Query: 154 PHPI--HSNLPVSVYESIIDLVGGEATMLFIELPYTIITEEAERMG 197
P L +S + S E+ Y I TEE ER+
Sbjct: 118 PSLQSDSEKLEISTFTSAQRE------ENGAEITYEIGTEETERIA 157
>gnl|CDD|215645 PLN03246, PLN03246, 26S proteasome regulatory subunit; Provisional.
Length = 303
Score = 114 bits (286), Expect = 2e-29
Identities = 74/275 (26%), Positives = 141/275 (51%), Gaps = 14/275 (5%)
Query: 39 VSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDE--- 95
V +HPLV+++I +HY R + +V+G L+G ++++ NSF + + ED+
Sbjct: 8 VVVHPLVLLSIVDHY--NRVAKDTRKRVVGVLLGSSFRGRVDVTNSFAVPFE--EDDKDP 63
Query: 96 --MIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLKLN 153
++ +Y FK++ +GWY+TG + E D+ +H+ + +P+ + ++
Sbjct: 64 SIWFLDHNYLESMFGMFKRINAKEHVVGWYSTGPKLRENDLDIHELFNDYVPNPVLVIID 123
Query: 154 PHPIHSNLPVSVYESIIDL---VGGEATMLFIELPYTIITEEAERMGVDHVARMSNNDSG 210
P +P Y ++ ++ ++ +F+ +P I EAE +GV+H+ R D+
Sbjct: 124 VQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIGAHEAEEIGVEHLLR-DVKDTT 182
Query: 211 ESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRLPVLDN 270
S+L E +T + A+K L R++ + YL V G LP+NH+IL L + + LP L+
Sbjct: 183 VSTLATE-VTGKLTALKGLDARLREIRSYLDLVVEGKLPLNHEILYHLQDVFNLLPNLNV 241
Query: 271 PAFKTDFYTQCNDVALITYLGTITKGCNDLNQFVN 305
F + ND+ L+ YL ++ + L+ +N
Sbjct: 242 EELVKAFAVKTNDMMLVIYLSSLIRSVIALHNLIN 276
>gnl|CDD|214573 smart00232, JAB_MPN, JAB/MPN domain. Domain in Jun kinase
activation domain binding protein and proteasomal
subunits. Domain at Mpr1p and Pad1p N-termini. Domain of
unknown function.
Length = 135
Score = 73.2 bits (180), Expect = 6e-16
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 38 HVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMI 97
V +HPLV +NI +H R P +V G L+G + E+K F + +D +
Sbjct: 1 EVKVHPLVPLNILKHAIRDG-----PEEVCGVLLGKSNKDRPEVKEVFAVPNEPQDDSVQ 55
Query: 98 INR-DYYTLKEEQFKQVFCDLDFLGWYTTG----DTVNELDIKVHKQICEINESPIFLKL 152
DY L +E+ K+V DL+ +GWY + +E+D+ H+ + L +
Sbjct: 56 EYDEDYSHLMDEELKKVNKDLEIVGWYHSHPDESPFPSEVDVATHESYQAPWPISVVLIV 115
Query: 153 NPHP-IHSNLPVSVYESI 169
+P L + +
Sbjct: 116 DPIKSFQGRLSLRAFRLT 133
>gnl|CDD|216478 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease. Members
of this family are found in proteasome regulatory
subunits, eukaryotic initiation factor 3 (eIF3) subunits
and regulators of transcription factors. This family is
also known as the MPN domain and PAD-1-like domain,
JABP1 domain or JAMM domain. These are metalloenzymes
that function as the ubiquitin isopeptidase/
deubiquitinase in the ubiquitin-based signaling and
protein turnover pathways in eukaryotes. Versions of the
domain in prokaryotic cognates of the
ubiquitin-modification pathway are predicted to have a
similar role.
Length = 117
Score = 67.8 bits (166), Expect = 3e-14
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 38 HVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRK-LEIKNSFELVYNIIEDEM 96
V +HPLV++ I +H R +V+G L+G G + +E+ NSF L + ED++
Sbjct: 4 TVVIHPLVLLKIVDHARRGGKSG---EEVMGVLLGTLEGDRVIEVTNSFALPQSETEDDV 60
Query: 97 IIN---RDYYTLKEEQFKQVFCDLDFLGWYTTGDT----VNELDIKVHKQICEINES 146
+Y E K+V D + +GWY + ++ +D+ + +
Sbjct: 61 EAVELDHEYMEKMLEMLKKVNRDEEVVGWYHSHPGYGCWLSSVDVHTQELYQRMIPE 117
>gnl|CDD|163696 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) domains without
catalytic isopeptidase activity, found in eIF2h.
Eukaryotic translation initiation factor 3 (eIF3)
subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma;
eIF3-p40) is an evolutionarily non-conserved subunit of
the functional core that comprises eIF3a, eIF3b, eIF3c,
eIF3e, eIF3f, and eIF3h, and contains the MPN domain.
However, it lacks the canonical JAMM motif, and
therefore does not show catalytic isopeptidase
activity.Together with eIF3e and eIF3f, eIF3h stabilizes
the eIF3 complex. Results suggest that eIF3h regulates
cell growth and viability, and that over-expression of
the gene may provide growth advantage to prostate,
breast, and liver cancer cells. For example, EIF3h gene
amplification is common in late-stage prostate cancer
suggesting that it may be functionally involved in the
progression of the disease. It has been shown that
coamplification of MYC, a well characterized oncogene
involved in cell growth, differentiation, and apoptosis,
and EIF3h in patients with non-small cell lung cancer
(NSCLC) improves survival if treated with the Epidermal
Growth Factor Receptor Tyrosine Kinase Inhibitor
(EGFR-TKI), Gefitinib. Plant eIF3h is implicated in
translation of specific mRNAs.
Length = 266
Score = 47.6 bits (114), Expect = 3e-06
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 38 HVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMI 97
V + LV++ I +H +E P V G L+G+ VG LE+ N F + +D
Sbjct: 2 SVQIDGLVVLKIIKHC-----KEELPELVQGQLLGLDVGGTLEVTNCFPFPKSEEDDSDR 56
Query: 98 INRDY--YTLKE-EQFKQVFCDLDFLGWYTT 125
+ D Y L+ ++V D + +GWY +
Sbjct: 57 ADEDIADYQLEMMRLLREVNVDHNHVGWYQS 87
>gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain.
Length = 319
Score = 29.3 bits (66), Expect = 2.5
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 22 TPAGKSVMAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALI 71
A + +G + VS HP+++ + E ++ +GK ++G LI
Sbjct: 250 AEAVLAAAEQGYLVFVEVSPHPVLLAAVEETL---KSADGKDATLVGTLI 296
>gnl|CDD|182776 PRK10848, PRK10848, phosphohistidine phosphatase; Provisional.
Length = 159
Score = 28.2 bits (63), Expect = 4.1
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 28/106 (26%)
Query: 199 DHVARMSNNDSGESSLVAEHLTAQYNAIKMLHV----RIKILLDYLKEVESGTLPVNHDI 254
D V ++ ES L+A L Q I+ + V R + L+ + E + LP + ++
Sbjct: 18 DSVRPLTTCGCDESRLMANWLKGQKVDIERVLVSPYLRAEQTLEVVGECLN--LPASAEV 75
Query: 255 LRELNALRHRLPVLDNPAFKTDFYTQCNDVALIT-YLGTITK-GCN 298
L EL T C DV L++ YL + G
Sbjct: 76 LPEL--------------------TPCGDVGLVSAYLQALANEGVA 101
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 28.4 bits (64), Expect = 7.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 103 YTLKEEQFKQVFCDLDFLGWYTTGD 127
Y E+ +V D+D +GWY TGD
Sbjct: 1001 YLGDPEKTAEVIKDIDGIGWYVTGD 1025
>gnl|CDD|213905 TIGR04292, heavy_Cys_GCP, heavy-Cys/GCP-CTERM domain protein.
Members of this protein family are restricted to the
Pyrococcus and Thermococcus genera of the archaea.
Member proteins have a C-terminal, Cys-containing
predicted surface anchor domain, where the Cys may be
the site of cleavage and lipid attachment (see domain
TIGR04288). Members also contain a region crowded with
10 invariant Cys in 60 residues (see domain TIGR04289),
possible ligands to some redox cofactor.
Length = 381
Score = 27.8 bits (62), Expect = 8.8
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 223 YNAIKMLHVRIKI-----LLDYLKEVESGTLPVNHDILRELNAL 261
+N LHVRI+I G LP+ D L + AL
Sbjct: 57 WNGDSGLHVRIQIPTKFKESKIYVAEFEGILPITEDALEKAKAL 100
>gnl|CDD|237395 PRK13482, PRK13482, DNA integrity scanning protein DisA;
Provisional.
Length = 352
Score = 27.8 bits (63), Expect = 9.3
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 86 ELVYNIIEDEMIINRDYYTLKEEQFKQVFCDLD 118
EL+ + E+ ++ RDY K+E +++ +L
Sbjct: 219 ELLAGVEEERELLIRDYSQEKDEDPEEILEELQ 251
>gnl|CDD|187725 cd08823, FMT_core_like_5, Formyl transferase catalytic core domain
found in a group of proteins with unknown functions.
Formyl transferase catalytic core domain found in a
group of proteins with unknown functions. Formyl
transferase catalyzes the transfer of one-carbon groups,
specifically the formyl- or hydroxymethyl- group. This
domain contains a Rossmann fold and it is the catalytic
domain of the enzyme.
Length = 177
Score = 27.0 bits (60), Expect = 9.7
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 131 ELDIKVHKQICEINESPIFLKLNPHPIHSNLPVSVYESIIDLVGGEATMLFIEL 184
E I VHK EI+ PI L+ PIH P Y + + A L EL
Sbjct: 123 ETAITVHKMTAEIDRGPIVLE-QFTPIH---PDDTYGLLCSRLAMLAVGLLEEL 172
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.395
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,807,459
Number of extensions: 1664714
Number of successful extensions: 1431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1410
Number of HSP's successfully gapped: 28
Length of query: 326
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 229
Effective length of database: 6,635,264
Effective search space: 1519475456
Effective search space used: 1519475456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)