RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy401
(326 letters)
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34,
JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P
ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Length = 187
Score = 160 bits (405), Expect = 1e-48
Identities = 44/184 (23%), Positives = 90/184 (48%), Gaps = 6/184 (3%)
Query: 34 TGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIE 93
V +HPLV++++ +H+ R + G +V+G L+G + L++ NSF + ++ +
Sbjct: 5 LAVQKVVVHPLVLLSVVDHFNRI-GKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDD 63
Query: 94 DEM---IINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFL 150
+ ++ DY FK+V +GWY TG +++ DI +++ + + + +
Sbjct: 64 KDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLV 123
Query: 151 KLNPHPIHSNLPVSVYESIIDLV--GGEATMLFIELPYTIITEEAERMGVDHVARMSNND 208
++ P LP Y S+ ++ G + F + I EEAE +GV+H+ R +
Sbjct: 124 IIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDT 183
Query: 209 SGES 212
+ +
Sbjct: 184 TVGT 187
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P
N-terminal) domain, unknown function; 2.50A {Drosophila
melanogaster}
Length = 141
Score = 156 bits (397), Expect = 7e-48
Identities = 85/141 (60%), Positives = 105/141 (74%), Gaps = 1/141 (0%)
Query: 32 GVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNI 91
G S+ +SLHPLVIMNISEH+TR RAQ G+P QV GALIG Q GR +EI NSFEL ++
Sbjct: 1 GSHMSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDV 60
Query: 92 IEDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKVHKQICEINESPIFLK 151
I DE +IN+DYY KE+Q+KQVF DLDF+GWYTTGD DIK+ +QI INE PI L+
Sbjct: 61 IGDETVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQ 120
Query: 152 LNPHPIHSN-LPVSVYESIID 171
LNP + LP+ ++ES+ID
Sbjct: 121 LNPLSRSVDHLPLKLFESLID 141
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 6e-09
Identities = 40/320 (12%), Positives = 96/320 (30%), Gaps = 90/320 (28%)
Query: 10 TATSSEVMDVDDTPAGKSV----MAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKP-- 63
T +V D + + +T SL + + R P
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQDLPREVLTTNPRR 329
Query: 64 VQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMIINRDYYTLKEEQFKQVFCDLDFLGWY 123
+ +I I + N N + II L+ +++++F L
Sbjct: 330 LSIIAESIRDGLAT---WDNW--KHVNCDKLTTIIESSLNVLEPAEYRKMFDRL------ 378
Query: 124 TTGDTVNELDIKVHKQICEINESPIFLKLNPHPIHSNLPVSVYESIIDLVGGEATMLFIE 183
+F P +++P + +++ +
Sbjct: 379 -----------------------SVF------PPSAHIPTILLS-----------LIWFD 398
Query: 184 LPYTIITEEAERMGVDHVARMSNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDYLKEV 243
+ + + V+ + + SLV + +I +++ +K+ L+ +
Sbjct: 399 VIK----SDVMVV-VNKLHK--------YSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 244 ESGTLPVNHDILRELNALRHRLP-VLDNPAFKTDFYTQCNDVALITYLGTITKGCNDLNQ 302
H + + + +P D+ D D +++G K + +
Sbjct: 446 --------HRSIVD----HYNIPKTFDS----DDLIPPYLDQYFYSHIGHHLKNI-EHPE 488
Query: 303 FVNKFNVLF-DKQMLGRKLR 321
+ F ++F D + L +K+R
Sbjct: 489 RMTLFRMVFLDFRFLEQKIR 508
Score = 53.7 bits (128), Expect = 4e-08
Identities = 43/221 (19%), Positives = 71/221 (32%), Gaps = 72/221 (32%)
Query: 12 TSSEVMDVDDTPAGKSVMAKGV---TGSIH-------------VSLHPLVIMNISEHYTR 55
S+VM V + S++ K T SI +LH ++ +HY
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV----DHYNI 455
Query: 56 RRAQEGKPVQVIGALIGIQVGRKLEIKNSF--ELVYNIIEDEMIINRDYYTLKEEQFKQV 113
+ + + + F + +++ E + F+ V
Sbjct: 456 PKTFDSDDLI------------PPYLDQYFYSHIGHHLKNIEH-------PERMTLFRMV 496
Query: 114 FCDLDFLG---------WYTTGDTVNEL-DIKVHKQ-ICE--------INESPIFLKLNP 154
F D FL W +G +N L +K +K IC+ +N FL
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL---- 552
Query: 155 HPIHSNLPVSVYESIIDLVGGEATMLFIELPYTIITEEAER 195
I NL S Y ++ + A M I EEA +
Sbjct: 553 PKIEENLICSKYTDLLRI----ALM----AEDEAIFEEAHK 585
Score = 33.7 bits (76), Expect = 0.083
Identities = 45/322 (13%), Positives = 91/322 (28%), Gaps = 124/322 (38%)
Query: 15 EVMDVDDTPAGKSVMAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQ 74
+ DV D P KS+++K I +S T R L
Sbjct: 34 DCKDVQDMP--KSILSKEEIDHIIMSKDA-------VSGTLR-------------LFWT- 70
Query: 75 VGRKLEIKNSFELVYNIIEDEMIINRDYYTLKE---EQFKQVFCDLDFLGWYTTGDTVNE 131
L K E+V +E+ ++ +Y L + +Q + T
Sbjct: 71 ----LLSKQE-EMVQKFVEE--VLRINYKFLMSPIKTEQRQ-----------PSMMT--R 110
Query: 132 LDIKVHKQICEINESPIFLKLN---PHPIHSNLPVSVYE----SIIDLVGGEATMLFIEL 184
+ I+ ++ N++ +F K N P L ++ E + + G +L
Sbjct: 111 MYIEQRDRLY--NDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDG----VL---- 159
Query: 185 PYTIITEEAERMGVDHVARMSNNDSGESSLVAEHLTAQYNAIKMLHVRIKILLDY----- 239
G SG++ + + + +++ +D+
Sbjct: 160 ------------G-----------SGKTWVALDVCLSY---------KVQCKMDFKIFWL 187
Query: 240 -LKEVESGTLPVNHDILRELNALRHRLPVLDNPAFKTDFYTQCNDVALITYLGTITKGCN 298
LK S +L L L +++ N + + I +
Sbjct: 188 NLKNCNS-----PETVLEMLQKLLYQI--------------DPNWTSRSDHSSNIKLRIH 228
Query: 299 DLNQFVNKFNVLFDKQMLGRKL 320
+ + L + L
Sbjct: 229 SIQ---AELRRLLKSKPYENCL 247
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.003
Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 51/160 (31%)
Query: 11 ATSSEVMDVDDTPA-----GKSV---MAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGK 62
A+ ++VM ++ G ++ + + G + + + ++ ++ QE
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS----QEA- 1825
Query: 63 PVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMIINRDYYTLKEEQFKQVFC-----DL 117
+Q + +G + G +EI N YN+ E Q Q L
Sbjct: 1826 -LQYVVERVGKRTGWLVEIVN-----YNV---------------ENQ--QYVAAGDLRAL 1862
Query: 118 DFLGWYTTGDTVNELD-IKVHK-QICEINESPIFLKLNPH 155
D + N L+ IK+ K I E+ +S ++ H
Sbjct: 1863 DTV--------TNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 28.5 bits (63), Expect = 4.0
Identities = 38/261 (14%), Positives = 74/261 (28%), Gaps = 89/261 (34%)
Query: 4 NTAAAPTATSSEVMDVDDTPAGKSVMAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKP 63
NT+ P+ + + + P S M ++ + V + T GK
Sbjct: 316 NTSLPPSILEDSLENNEGVP---SPML-SISNLTQEQVQDYV------NKTNSHLPAGKQ 365
Query: 64 VQ----------VI-G---ALIGIQV-------------------GRKLEIKNSF----- 85
V+ V+ G +L G+ + RKL+ N F
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 86 --------ELVYNIIEDEMIINRDYYTLKEEQFK-QVFCDLDFLGWYT-TGDTVNELDIK 135
I +D + ++ + + + V+ T G + L
Sbjct: 426 PFHSHLLVPASDLINKD---LVKNNVSFNAKDIQIPVYD--------TFDGSDLRVLSGS 474
Query: 136 VHKQICE-INESPIF--LKLNPHPIHSNLPVSVYESIIDLVGGEATMLFIELPYTIITEE 192
+ ++I + I P+ H I+D G A+ L +
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATH----------ILDFGPGGASGL-----GVLTHRN 519
Query: 193 AERMGVDHV--ARMSNNDSGE 211
+ GV + + N +
Sbjct: 520 KDGTGVRVIVAGTLDINPDDD 540
Score = 28.1 bits (62), Expect = 5.2
Identities = 40/270 (14%), Positives = 83/270 (30%), Gaps = 86/270 (31%)
Query: 19 VDDTPAGKSVMAKGVTGSIHVSLHPLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRK 78
V + P ++ G G I E+Y+ + ++ I ++
Sbjct: 1665 VINNPVNLTIHFGGEKGK-----------RIRENYSAMIFETIVDGKLKTEKIFKEINEH 1713
Query: 79 LEIKNSFELVYNIIEDEMIINRDYYT--------------LKEEQFKQVFCDLDF----L 120
+F ++ +++ +T LK + D F L
Sbjct: 1714 ST-SYTFR------SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPA--DATFAGHSL 1764
Query: 121 GWYT-----TG-----DTVNELDIKVHK-----QIC----EINESPI-FLKLNPHPIHSN 160
G Y V E+ V Q+ E+ S + +NP + ++
Sbjct: 1765 GEYAALASLADVMSIESLV-EV---VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 161 LPVSVYESIIDLVGGEATMLFIELPYTIITEEAERMGVDHVARMSN-NDSGESSLVAEHL 219
+ +++ V G+ T +E + N N + + A L
Sbjct: 1821 FSQEALQYVVERV-GKRTGWLVE-----------------IV---NYNVENQQYVAAGDL 1859
Query: 220 TAQYNAIKMLHVRIKIL-LDYLKEVESGTL 248
A +L+ IK+ +D ++ +S +L
Sbjct: 1860 RALDTVTNVLN-FIKLQKIDIIELQKSLSL 1888
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 30.5 bits (68), Expect = 0.73
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 99 NRDYYTLKEE--QFKQVFCDLDF------LGWYTTGDTVNELDIKVHKQICEINESPIFL 150
N+DY TL+ E + +F D F LG+ G ++ K+ EI P F+
Sbjct: 29 NQDYETLRNECLEAGALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICADPQFI 88
Query: 151 KLNPHP 156
Sbjct: 89 IGGATR 94
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 1.1
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 11/70 (15%)
Query: 119 FLGWYT--TGDTVNELDIKV--HKQICE------INESPIFLKLNPHPIHSNLPVSVYES 168
+ GW T + V++ D+K I E I E +F NP V V E
Sbjct: 873 YTGWVDSKTKEPVDDKDVKAKYETSILEHSGIRLI-EPELFNGYNPEKKEMIQEVIVEED 931
Query: 169 IIDLVGGEAT 178
+ + T
Sbjct: 932 LEPFEASKET 941
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.9
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 222 QYNAIKMLHVRIKILLDYLKEVESG-TLPVNHDI 254
+ A+K L +K+ Y +S L + +
Sbjct: 18 EKQALKKLQASLKL---Y--ADDSAPALAIKATM 46
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI,
PROT structure initiative; 1.90A {Salmonella
typhimurium} SCOP: a.35.1.6
Length = 120
Score = 27.7 bits (61), Expect = 2.7
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 63 PVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMIINRDYYTLKEEQFKQVFCDLDFLGW 122
++I L ++ R+ I + + N I + + R + L F+ ++ + DF+ W
Sbjct: 46 SPEIIARLKEMKARRQRRINAIVDKINNRIGNNTM--RYFPDLSS--FQSIYTEGDFIEW 101
Query: 123 YTTGDTVNELDIKVHKQIC 141
EL +++C
Sbjct: 102 KIYQSVAAELFAHDLERLC 120
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase,
protein-carbohydrate complex, desiccation resistance;
HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A*
2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Length = 602
Score = 27.7 bits (62), Expect = 5.8
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 252 HDILRELNALRHRLPVLDNPAF 273
+ R+L LR PVL N
Sbjct: 511 LRLYRDLLRLRREDPVLHNRQR 532
>1yy7_A SSPA, stringent starvation protein A; GST fold, transcription; HET:
CIT; 2.02A {Yersinia pestis}
Length = 213
Score = 27.3 bits (61), Expect = 6.7
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 144 NESPIFLKLNPH---P--IHSNLPVSVYESII 170
N + LNP+ P + L +YES I
Sbjct: 45 NLPQDLIDLNPYRTVPTLVDRELT--LYESRI 74
>3jrt_A Integron cassette protein VPC_CASS2; mobIle metagenome, structural
genomics, PSI-2 protein structure initiative; 2.30A
{Vibrio paracholerae}
Length = 192
Score = 27.0 bits (59), Expect = 7.8
Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 18/114 (15%)
Query: 77 RKLEIKNSFELVYNIIEDEMIINRDYYTLKEEQFKQVFCDLDFLGWYTTGDTVNELDIKV 136
R+ + + + ++ + ++IN Y +++ + F L + +
Sbjct: 59 REPQHQTKRQCIWRLCVYSIVINCRKYVELNQKYGKEFQAL-----------IPGHNHIR 107
Query: 137 HKQICEINESPIFLKLNPHPI-HSN------LPVSVYESIIDLVGGEATMLFIE 183
EIN++ KL H + H + P V E II + G F++
Sbjct: 108 GVYNNEINKNTAIKKLRNHCVAHVSDKSKYLKPAEVQEEIIKMFDGNFADEFLD 161
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel,
alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus
solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A*
3vgh_A* 3vgg_A* 1eha_A
Length = 558
Score = 27.2 bits (61), Expect = 9.2
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 256 RELNALRHRLPVLDNPAFKTD 276
+ L +R L + +
Sbjct: 478 KILIKMRKELSIACDRRVNVV 498
>3lyk_A Stringent starvation protein A homolog; structural genomics,
GST-superfamily, SSPA, PSI-2, protein structure
initiative; 2.10A {Haemophilus influenzae}
Length = 216
Score = 26.5 bits (59), Expect = 9.7
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 144 NESPIFLKLNPH---P--IHSNLPVSVYESII 170
++LNP+ P + +L ++ S I
Sbjct: 41 ALPEDLMELNPYGTVPTLVDRDLV--LFNSRI 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.395
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,030,419
Number of extensions: 312120
Number of successful extensions: 716
Number of sequences better than 10.0: 1
Number of HSP's gapped: 704
Number of HSP's successfully gapped: 23
Length of query: 326
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 232
Effective length of database: 4,077,219
Effective search space: 945914808
Effective search space used: 945914808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)