RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy401
         (326 letters)



>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 640

 Score = 29.1 bits (64), Expect = 0.92
 Identities = 13/87 (14%), Positives = 24/87 (27%), Gaps = 8/87 (9%)

Query: 49  ISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMIINRD------Y 102
                        KP        GI     L+     EL  +  E  + +          
Sbjct: 404 HLVTPLAGGVTPMKPGSASFPFFGIDA-VVLDPNTGEELNTSHAEGVLAVKAAWPSFART 462

Query: 103 YTLKEEQFKQVFCDLDFLGWYTTGDTV 129
                +++   + +  + G+Y TGD  
Sbjct: 463 IWKNHDRYLDTYLN-PYPGYYFTGDGA 488


>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside
           phosphotransferase {Enterococcus faecalis [TaxId: 1351]}
          Length = 263

 Score = 27.3 bits (59), Expect = 2.4
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 239 YLKEVESGTLPVNHDILRE---LNALRHRLPVLDNPAFKTDF 277
           YLK  +S      +D+ RE   +  L  +LPV     F+   
Sbjct: 41  YLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHD 82


>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923
           {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 269

 Score = 26.5 bits (58), Expect = 4.1
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 207 NDSGE-SSLVAEHLTAQYNAIKMLHVRIKILLDYLKEVESGTLPVNHDILRELNALRHRL 265
            D+G      + HL    +   +       L+DY        + + H+ +  ++ L   L
Sbjct: 31  ADAGHAVESSSSHLMDALDHRLIASFNNDELIDY--RSRRPVVVIEHNEVTSMDELNLGL 88

Query: 266 PVLDNPA 272
            V+ +  
Sbjct: 89  HVVRDND 95


>d3cmna1 d.92.1.16 (A:43-391) Uncharacterized protein Caur0242
           {Chloroflexus aurantiacus [TaxId: 1108]}
          Length = 346

 Score = 26.1 bits (57), Expect = 5.8
 Identities = 6/33 (18%), Positives = 13/33 (39%)

Query: 46  IMNISEHYTRRRAQEGKPVQVIGALIGIQVGRK 78
              I +   +R+ Q     Q++  L G+ +   
Sbjct: 267 FNQIEQQIAQRQRQRTMLDQMVFRLTGLDLKLA 299


>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
           [TaxId: 28901]}
          Length = 643

 Score = 25.8 bits (56), Expect = 8.4
 Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 4/87 (4%)

Query: 43  PLVIMNISEHYTRRRAQEGKPVQVIGALIGIQVGRKLEIKNSFELVYNIIEDEMIINRDY 102
             +I  +      +     +P   +   +    G   E      LV   I D        
Sbjct: 416 GFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLV---ITDSWPGQART 472

Query: 103 YTLKEEQFKQVFCDLDFLGWYTTGDTV 129
                E+F+Q +    F   Y +GD  
Sbjct: 473 LFGDHERFEQTYFS-TFKNMYFSGDGA 498


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,204,767
Number of extensions: 57394
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 10
Length of query: 326
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 240
Effective length of database: 1,226,816
Effective search space: 294435840
Effective search space used: 294435840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)