BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4010
(1527 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JYC|A Chain A, Crystal Structure Of The Eukaryotic Strong Inward-Rectifier
K+ Channel Kir2.2 At 3.1 Angstrom Resolution
pdb|3SPC|A Chain A, Inward Rectifier Potassium Channel Kir2.2 In Complex With
Dioctanoylglycerol Pyrophosphate (Dgpp)
pdb|3SPI|A Chain A, Inward Rectifier Potassium Channel Kir2.2 In Complex With
Pip2
Length = 343
Score = 236 bits (602), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 118/237 (49%), Positives = 159/237 (67%), Gaps = 2/237 (0%)
Query: 776 FACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTEC 835
F I+WL+A HGD L + F PCV+ VN F ++ LFSIETQ TIGYG R T EC
Sbjct: 62 FGLIFWLIALIHGD-LENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEEC 120
Query: 836 PEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRV 895
P A++++ VQSIVG II +FM G + AK+ARPK+R QTLLFS AV+ RDG LCLM+RV
Sbjct: 121 PLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMRDGKLCLMWRV 180
Query: 896 GDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRI 955
G++R KSHI+ A V+A L+K R T EGE + ++ + D+ IFL+ P ++H I
Sbjct: 181 GNLR-KSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLVSPITILHEI 239
Query: 956 DEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGHRFEPLV 1012
+E+SPL+ ++ + L T+ FEI+ IL A++SYL SEILWGHRFEP++
Sbjct: 240 NEDSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVL 296
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 125/228 (54%), Gaps = 42/228 (18%)
Query: 320 LQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKA 379
+ +FM G + AK+ARPK+R QTLLFS AV+ RDG LCLM+RVG++R KSHI+ A V+A
Sbjct: 137 IDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMRDGKLCLMWRVGNLR-KSHIVEAHVRA 195
Query: 380 YLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIF 439
L+K R T EGE + LD + F D+ IF
Sbjct: 196 QLIKPRITEEGEYIP---------LDQIDIDVGF------------------DKGLDRIF 228
Query: 440 LLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILW 499
L+ P ++H I+E+SPL+ ++ + L T+ FEI+ IL A++SYL SEILW
Sbjct: 229 LVSPITILHEINEDSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILW 288
Query: 500 GHRFEPLVRKDK---PCDKPHF-KSYD----------DLINEALLESN 533
GHRFEP++ ++K D HF K+Y+ DL+ L SN
Sbjct: 289 GHRFEPVLFEEKNQYKVDYSHFHKTYEVPSTPRCSAKDLVENKFLLSN 336
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 40/58 (68%)
Query: 101 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIV 158
RK + R + KNG N+ N+ + + ++ D+FTT VDI+WR+ +L+ S+ FL+SW++
Sbjct: 4 RKCRNRFVKKNGQCNVEFTNMDDKPQRYIADMFTTCVDIRWRYMLLLFSLAFLVSWLL 61
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 639 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLL 685
RK + R + KNG N+ N+ + + ++ D+FTT VDI+WR+ +LL
Sbjct: 4 RKCRNRFVKKNGQCNVEFTNMDDKPQRYIADMFTTCVDIRWRYMLLL 50
>pdb|3SPH|A Chain A, Inward Rectifier Potassium Channel Kir2.2 I223l Mutant In
Complex With Pip2
pdb|3SPJ|A Chain A, Apo Inward Rectifier Potassium Channel Kir2.2 I223l Mutant
Length = 343
Score = 235 bits (600), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 117/237 (49%), Positives = 159/237 (67%), Gaps = 2/237 (0%)
Query: 776 FACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTEC 835
F I+WL+A HGD L + F PCV+ VN F ++ LFSIETQ TIGYG R T EC
Sbjct: 62 FGLIFWLIALIHGD-LENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEEC 120
Query: 836 PEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRV 895
P A++++ VQSIVG II +FM G + AK+ARPK+R QTLLFS AV+ RDG LCLM+RV
Sbjct: 121 PLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMRDGKLCLMWRV 180
Query: 896 GDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRI 955
G++R KSH++ A V+A L+K R T EGE + ++ + D+ IFL+ P ++H I
Sbjct: 181 GNLR-KSHLVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLVSPITILHEI 239
Query: 956 DEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGHRFEPLV 1012
+E+SPL+ ++ + L T+ FEI+ IL A++SYL SEILWGHRFEP++
Sbjct: 240 NEDSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVL 296
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 125/228 (54%), Gaps = 42/228 (18%)
Query: 320 LQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKA 379
+ +FM G + AK+ARPK+R QTLLFS AV+ RDG LCLM+RVG++R KSH++ A V+A
Sbjct: 137 IDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMRDGKLCLMWRVGNLR-KSHLVEAHVRA 195
Query: 380 YLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIF 439
L+K R T EGE + LD + F D+ IF
Sbjct: 196 QLIKPRITEEGEYIP---------LDQIDIDVGF------------------DKGLDRIF 228
Query: 440 LLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILW 499
L+ P ++H I+E+SPL+ ++ + L T+ FEI+ IL A++SYL SEILW
Sbjct: 229 LVSPITILHEINEDSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILW 288
Query: 500 GHRFEPLVRKDK---PCDKPHF-KSYD----------DLINEALLESN 533
GHRFEP++ ++K D HF K+Y+ DL+ L SN
Sbjct: 289 GHRFEPVLFEEKNQYKVDYSHFHKTYEVPSTPRCSAKDLVENKFLLSN 336
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 40/58 (68%)
Query: 101 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIV 158
RK + R + KNG N+ N+ + + ++ D+FTT VDI+WR+ +L+ S+ FL+SW++
Sbjct: 4 RKCRNRFVKKNGQCNVEFTNMDDKPQRYIADMFTTCVDIRWRYMLLLFSLAFLVSWLL 61
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 639 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLL 685
RK + R + KNG N+ N+ + + ++ D+FTT VDI+WR+ +LL
Sbjct: 4 RKCRNRFVKKNGQCNVEFTNMDDKPQRYIADMFTTCVDIRWRYMLLL 50
>pdb|3SPG|A Chain A, Inward Rectifier Potassium Channel Kir2.2 R186a Mutant In
Complex With Pip2
Length = 343
Score = 234 bits (596), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 117/237 (49%), Positives = 158/237 (66%), Gaps = 2/237 (0%)
Query: 776 FACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTEC 835
F I+WL+A HGD L + F PCV+ VN F ++ LFSIETQ TIGYG R T EC
Sbjct: 62 FGLIFWLIALIHGD-LENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEEC 120
Query: 836 PEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRV 895
P A++++ VQSIVG II +FM G + AK+A PK+R QTLLFS AV+ RDG LCLM+RV
Sbjct: 121 PLAVFMVVVQSIVGCIIDSFMIGAIMAKMAAPKKRAQTLLFSHNAVVAMRDGKLCLMWRV 180
Query: 896 GDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRI 955
G++R KSHI+ A V+A L+K R T EGE + ++ + D+ IFL+ P ++H I
Sbjct: 181 GNLR-KSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLVSPITILHEI 239
Query: 956 DEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGHRFEPLV 1012
+E+SPL+ ++ + L T+ FEI+ IL A++SYL SEILWGHRFEP++
Sbjct: 240 NEDSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVL 296
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 124/228 (54%), Gaps = 42/228 (18%)
Query: 320 LQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKA 379
+ +FM G + AK+A PK+R QTLLFS AV+ RDG LCLM+RVG++R KSHI+ A V+A
Sbjct: 137 IDSFMIGAIMAKMAAPKKRAQTLLFSHNAVVAMRDGKLCLMWRVGNLR-KSHIVEAHVRA 195
Query: 380 YLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIF 439
L+K R T EGE + LD + F D+ IF
Sbjct: 196 QLIKPRITEEGEYIP---------LDQIDIDVGF------------------DKGLDRIF 228
Query: 440 LLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILW 499
L+ P ++H I+E+SPL+ ++ + L T+ FEI+ IL A++SYL SEILW
Sbjct: 229 LVSPITILHEINEDSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILW 288
Query: 500 GHRFEPLVRKDK---PCDKPHF-KSYD----------DLINEALLESN 533
GHRFEP++ ++K D HF K+Y+ DL+ L SN
Sbjct: 289 GHRFEPVLFEEKNQYKVDYSHFHKTYEVPSTPRCSAKDLVENKFLLSN 336
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 40/58 (68%)
Query: 101 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIV 158
RK + R + KNG N+ N+ + + ++ D+FTT VDI+WR+ +L+ S+ FL+SW++
Sbjct: 4 RKCRNRFVKKNGQCNVEFTNMDDKPQRYIADMFTTCVDIRWRYMLLLFSLAFLVSWLL 61
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 639 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLL 685
RK + R + KNG N+ N+ + + ++ D+FTT VDI+WR+ +LL
Sbjct: 4 RKCRNRFVKKNGQCNVEFTNMDDKPQRYIADMFTTCVDIRWRYMLLL 50
>pdb|3SYA|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier K+
Channel Girk2 (Kir3.2) In Complex With Sodium And Pip2
pdb|3SYO|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier K+
Channel Girk2 (Kir3.2) In Complex With Sodium
Length = 340
Score = 229 bits (584), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 165/239 (69%), Gaps = 7/239 (2%)
Query: 776 FACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTEC 835
F IWWL+AY GD+ ++ +P + PCV +N F S+ LFSIET+ TIGYG R T +C
Sbjct: 60 FGMIWWLIAYIRGDM--DHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKC 117
Query: 836 PEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRV 895
PE I L+ +QS++G+I+ AFM G +F K+++PK+R +TL+FS AVI+ RDG LCLMFRV
Sbjct: 118 PEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMRDGKLCLMFRV 177
Query: 896 GDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSD--IFLLWPTIVVH 953
GD+R SHI+ AS++A L+K++ T+EGE + L++ +++ Y D +FL+ P I+ H
Sbjct: 178 GDLR-NSHIVEASIRAKLIKSKQTSEGEFIP--LNQTDINVGYYTGDDRLFLVSPLIISH 234
Query: 954 RIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGHRFEPLV 1012
I+++SP ++++ +L E+ EI+ IL A++SY+ SEILWG+RF P++
Sbjct: 235 EINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVL 293
Score = 133 bits (335), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 119/208 (57%), Gaps = 32/208 (15%)
Query: 318 SRLQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASV 377
S + AFM G +F K+++PK+R +TL+FS AVI+ RDG LCLMFRVGD+R SHI+ AS+
Sbjct: 132 SIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMRDGKLCLMFRVGDLR-NSHIVEASI 190
Query: 378 KAYLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSD 437
+A L+K++ T+EGE + L T+ +++ Y D
Sbjct: 191 RAKLIKSKQTSEGEFIP-------------LNQTD----------------INVGYYTGD 221
Query: 438 --IFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPS 495
+FL+ P I+ H I+++SP ++++ +L E+ EI+ IL A++SY+ S
Sbjct: 222 DRLFLVSPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITS 281
Query: 496 EILWGHRFEPLVRKDKPCDKPHFKSYDD 523
EILWG+RF P++ + + + S+ +
Sbjct: 282 EILWGYRFTPVLTLEDGFYEVDYNSFHE 309
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 101 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWI 157
RK++ R + K+G N+ N+ + R +L DIFTTLVD++WR+ +L+ M + ++W+
Sbjct: 4 RKIQ-RYVRKDGKCNVHHGNVRETYR-YLTDIFTTLVDLKWRFNLLIFVMVYTVTWL 58
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 639 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLL 685
RK++ R + K+G N+ N+ + R +L DIFTTLVD++WR+ +L+
Sbjct: 4 RKIQ-RYVRKDGKCNVHHGNVRETYR-YLTDIFTTLVDLKWRFNLLI 48
>pdb|3SYC|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier K+
Channel Girk2 (Kir3.2) D228n Mutant
Length = 340
Score = 228 bits (580), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 165/239 (69%), Gaps = 7/239 (2%)
Query: 776 FACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTEC 835
F IWWL+AY GD+ ++ +P + PCV +N F S+ LFSIET+ TIGYG R T +C
Sbjct: 60 FGMIWWLIAYIRGDM--DHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKC 117
Query: 836 PEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRV 895
PE I L+ +QS++G+I+ AFM G +F K+++PK+R +TL+FS AVI+ RDG LCLMFRV
Sbjct: 118 PEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMRDGKLCLMFRV 177
Query: 896 GDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSD--IFLLWPTIVVH 953
G++R SHI+ AS++A L+K++ T+EGE + L++ +++ Y D +FL+ P I+ H
Sbjct: 178 GNLR-NSHIVEASIRAKLIKSKQTSEGEFIP--LNQTDINVGYYTGDDRLFLVSPLIISH 234
Query: 954 RIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGHRFEPLV 1012
I+++SP ++++ +L E+ EI+ IL A++SY+ SEILWG+RF P++
Sbjct: 235 EINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVL 293
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 119/208 (57%), Gaps = 32/208 (15%)
Query: 318 SRLQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASV 377
S + AFM G +F K+++PK+R +TL+FS AVI+ RDG LCLMFRVG++R SHI+ AS+
Sbjct: 132 SIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMRDGKLCLMFRVGNLR-NSHIVEASI 190
Query: 378 KAYLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSD 437
+A L+K++ T+EGE + L T+ +++ Y D
Sbjct: 191 RAKLIKSKQTSEGEFIP-------------LNQTD----------------INVGYYTGD 221
Query: 438 --IFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPS 495
+FL+ P I+ H I+++SP ++++ +L E+ EI+ IL A++SY+ S
Sbjct: 222 DRLFLVSPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITS 281
Query: 496 EILWGHRFEPLVRKDKPCDKPHFKSYDD 523
EILWG+RF P++ + + + S+ +
Sbjct: 282 EILWGYRFTPVLTLEDGFYEVDYNSFHE 309
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 101 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWI 157
RK++ R + K+G N+ N+ + R +L DIFTTLVD++WR+ +L+ M + ++W+
Sbjct: 4 RKIQ-RYVRKDGKCNVHHGNVRETYR-YLTDIFTTLVDLKWRFNLLIFVMVYTVTWL 58
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 639 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLL 685
RK++ R + K+G N+ N+ + R +L DIFTTLVD++WR+ +L+
Sbjct: 4 RKIQ-RYVRKDGKCNVHHGNVRETYR-YLTDIFTTLVDLKWRFNLLI 48
>pdb|3SYP|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier K+
Channel Girk2 (Kir3.2) R201a Mutant
pdb|3SYQ|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier K+
Channel Girk2 (Kir3.2) R201a Mutant In Complex With Pip2
pdb|3SYQ|B Chain B, Crystal Structure Of The G Protein-Gated Inward Rectifier K+
Channel Girk2 (Kir3.2) R201a Mutant In Complex With Pip2
Length = 340
Score = 227 bits (578), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 164/239 (68%), Gaps = 7/239 (2%)
Query: 776 FACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTEC 835
F IWWL+AY GD+ ++ +P + PCV +N F S+ LFSIET+ TIGYG R T +C
Sbjct: 60 FGMIWWLIAYIRGDM--DHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKC 117
Query: 836 PEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRV 895
PE I L+ +QS++G+I+ AFM G +F K+++PK+ +TL+FS AVI+ RDG LCLMFRV
Sbjct: 118 PEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKAAETLVFSTHAVISMRDGKLCLMFRV 177
Query: 896 GDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSD--IFLLWPTIVVH 953
GD+R SHI+ AS++A L+K++ T+EGE + L++ +++ Y D +FL+ P I+ H
Sbjct: 178 GDLR-NSHIVEASIRAKLIKSKQTSEGEFIP--LNQTDINVGYYTGDDRLFLVSPLIISH 234
Query: 954 RIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGHRFEPLV 1012
I+++SP ++++ +L E+ EI+ IL A++SY+ SEILWG+RF P++
Sbjct: 235 EINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVL 293
Score = 131 bits (329), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 118/208 (56%), Gaps = 32/208 (15%)
Query: 318 SRLQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASV 377
S + AFM G +F K+++PK+ +TL+FS AVI+ RDG LCLMFRVGD+R SHI+ AS+
Sbjct: 132 SIVNAFMVGCMFVKISQPKKAAETLVFSTHAVISMRDGKLCLMFRVGDLR-NSHIVEASI 190
Query: 378 KAYLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSD 437
+A L+K++ T+EGE + L T+ +++ Y D
Sbjct: 191 RAKLIKSKQTSEGEFIP-------------LNQTD----------------INVGYYTGD 221
Query: 438 --IFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPS 495
+FL+ P I+ H I+++SP ++++ +L E+ EI+ IL A++SY+ S
Sbjct: 222 DRLFLVSPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITS 281
Query: 496 EILWGHRFEPLVRKDKPCDKPHFKSYDD 523
EILWG+RF P++ + + + S+ +
Sbjct: 282 EILWGYRFTPVLTLEDGFYEVDYNSFHE 309
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 101 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWI 157
RK++ R + K+G N+ N+ + R +L DIFTTLVD++WR+ +L+ M + ++W+
Sbjct: 4 RKIQ-RYVRKDGKCNVHHGNVRETYR-YLTDIFTTLVDLKWRFNLLIFVMVYTVTWL 58
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 639 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLL 685
RK++ R + K+G N+ N+ + R +L DIFTTLVD++WR+ +L+
Sbjct: 4 RKIQ-RYVRKDGKCNVHHGNVRETYR-YLTDIFTTLVDLKWRFNLLI 48
>pdb|2RJB|A Chain A, Crystal Structure Of Uncharacterized Protein Ydcj (Sf1787)
From Shigella Flexneri Which Includes Domain Duf1338.
Northeast Structural Genomics Consortium Target Sfr276
pdb|2RJB|B Chain B, Crystal Structure Of Uncharacterized Protein Ydcj (Sf1787)
From Shigella Flexneri Which Includes Domain Duf1338.
Northeast Structural Genomics Consortium Target Sfr276
pdb|2RJB|C Chain C, Crystal Structure Of Uncharacterized Protein Ydcj (Sf1787)
From Shigella Flexneri Which Includes Domain Duf1338.
Northeast Structural Genomics Consortium Target Sfr276
pdb|2RJB|D Chain D, Crystal Structure Of Uncharacterized Protein Ydcj (Sf1787)
From Shigella Flexneri Which Includes Domain Duf1338.
Northeast Structural Genomics Consortium Target Sfr276
Length = 455
Score = 208 bits (530), Expect = 2e-53, Method: Composition-based stats.
Identities = 159/469 (33%), Positives = 228/469 (48%), Gaps = 84/469 (17%)
Query: 1108 MSPNAIRKLFSQSMSEMYKKQVPQYSTLLELVRQVNLDTLANSGKLDE--MSAEDLERLN 1165
++ + IR+ FSQ+ S Y+++VPQY TLLELV VNL L N+ +L E ++A++L RLN
Sbjct: 5 ITADEIREQFSQAXSAXYQQEVPQYGTLLELVADVNLAVLENNPQLHEKXVNADELARLN 64
Query: 1166 EERHGAIRLGTPEELYNIRRLFSVMNMHPVGYYDLSTAGVPVHSTAFRSIDAYALNQSPF 1225
ERHGAIR+GT +EL +RR F++ +PV YYDLS AGVPVHSTAFR ID +L ++PF
Sbjct: 65 VERHGAIRVGTAQELATLRRXFAIXGXYPVSYYDLSQAGVPVHSTAFRPIDDASLARNPF 124
Query: 1226 RVFTSLLRLELIEDKVEQSDSPHEAKHTARFG--------EVEQRGIALTAKGRQLYDYL 1277
RVFTSLLRLELIE+++ + + + F E EQ+G + ++
Sbjct: 125 RVFTSLLRLELIENEILRQKAAEILRQRDIFTPRCRQLLEEYEQQGGFNETQAQEFVQEA 184
Query: 1278 LDKTR-GSFKGIPDETNSKLYMEN-LASNFSVFPD-DLNTLRKEKLAYFNYYVTDKEPYF 1334
L+ R + +ET L+ E+ L ++ FP +N L L V P
Sbjct: 185 LETFRWHQLATVDEETYRALHNEHRLIADVVCFPGCHINHLTPRTLDIDR--VQSXXPEC 242
Query: 1335 GGPKPISLGGFIFVPLLCGDSSSPVYHCLDSCPPPQWNPALLRRSH-------KVCAGKN 1387
G I + G PP + P LLR++ + AG+
Sbjct: 243 GIEPKILIEG----------------------PPRREVPILLRQTSFKALEETVLFAGQK 280
Query: 1388 SRPRSIRLCVID-RGLKLFPAHTFRRRLSNGLSESALDLYQTDHISGKSHLDKNVNDFNL 1446
+ R I+ RG+ L P R+L + L +A D+++ + HL + F
Sbjct: 281 QGTHTARFGEIEQRGVALTPKG---RQLYDDLLRNAGT--GQDNLTHQXHLQETFRTFPD 335
Query: 1447 DNY----------------------------------VRAGLIGYEGITYEDFLPVSAAG 1472
+ + G + + ITYEDFLPVSAAG
Sbjct: 336 SEFLXRQQGLAWFRYRLTPSGEAHRQAIHPGDDPQPLIERGWVVAQPITYEDFLPVSAAG 395
Query: 1473 IFQSNLSTNANHHIESQSSRHDFENALGCSVRDEMKLYEDLEKKSLQDC 1521
IFQSNL +SR FE ALGC V DE +LY++ E++S + C
Sbjct: 396 IFQSNLGNETQTRSHGNASREAFEQALGCPVLDEFQLYQEAEERSKRRC 444
Score = 105 bits (262), Expect = 2e-22, Method: Composition-based stats.
Identities = 63/140 (45%), Positives = 79/140 (56%), Gaps = 23/140 (16%)
Query: 126 RAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIVSYDTYQTLLDTHSLVADIVCFKTPHIN 185
+ F+Q+ T +RW L V +TY+ L + H L+AD+VCF HIN
Sbjct: 178 QEFVQEALET-----FRWHQLA---------TVDEETYRALHNEHRLIADVVCFPGCHIN 223
Query: 186 HLTPSTLDIDRVQDRMVAQMSRHGSC--VPKAVIEGPPRREVPILLRQTSFKALTEDIAV 243
HLTP TLDIDRVQ S C PK +IEGPPRREVPILLRQTSFKAL E +
Sbjct: 224 HLTPRTLDIDRVQ-------SXXPECGIEPKILIEGPPRREVPILLRQTSFKALEETVLF 276
Query: 244 PGRDVGSISIFNGQFFLRGL 263
G+ G+ + G+ RG+
Sbjct: 277 AGQKQGTHTARFGEIEQRGV 296
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 118/204 (57%), Gaps = 3/204 (1%)
Query: 809 SFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPK 868
F + FS+ET T+GYG T A W+ ++ VG A TG F K+++PK
Sbjct: 78 GFGGAFFFSVETLATVGYGDMHPQT--VYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135
Query: 869 QRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPF 928
+R +TL+FS AVI+ RDG L LMFRVG++R SH++ A ++ L+K+R T EGE L
Sbjct: 136 KRAETLMFSEHAVISMRDGKLTLMFRVGNLR-NSHMVSAQIRCKLLKSRQTPEGEFLPLD 194
Query: 929 LSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXX 988
EL + +FL+ P + H ID +SP YD++ + + TE+FE++ IL
Sbjct: 195 QLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTG 254
Query: 989 XXXXAKTSYLPSEILWGHRFEPLV 1012
A+TSY E+LWGHRF P++
Sbjct: 255 MTCQARTSYTEDEVLWGHRFFPVI 278
Score = 126 bits (317), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 28/200 (14%)
Query: 322 AFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYL 381
A TG F K+++PK+R +TL+FS AVI+ RDG L LMFRVG++R SH++ A ++ L
Sbjct: 121 ALATGCAFIKMSQPKKRAETLMFSEHAVISMRDGKLTLMFRVGNLR-NSHMVSAQIRCKL 179
Query: 382 VKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLL 441
+K+R T EGE L LD + FS+ DQ +FL+
Sbjct: 180 LKSRQTPEGEFLP---------LDQLELDVGFSTGA--------------DQ----LFLV 212
Query: 442 WPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGH 501
P + H ID +SP YD++ + + TE+FE++ IL A+TSY E+LWGH
Sbjct: 213 SPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGH 272
Query: 502 RFEPLVRKDKPCDKPHFKSY 521
RF P++ ++ K + +
Sbjct: 273 RFFPVISLEEGFFKVDYSQF 292
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 102 KLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLL 154
K ++R +DKNG N+ N+ +L D+FTTLVD++WRW + ++ FLL
Sbjct: 3 KKRQRFVDKNGRCNVQHGNLGSETSRYLSDLFTTLVDLKWRWFFVSLAVLFLL 55
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 640 KLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTML-LALSYPVLKSTCPA 698
K ++R +DKNG N+ N+ +L D+FTTLVD++WRW + LA+ + +L +
Sbjct: 3 KKRQRFVDKNGRCNVQHGNLGSETSRYLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFAT 62
Query: 699 QFKLLS 704
+ L S
Sbjct: 63 LYMLGS 68
>pdb|1U4F|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
pdb|1U4F|B Chain B, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
pdb|1U4F|C Chain C, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
pdb|1U4F|D Chain D, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
Length = 270
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 95/145 (65%), Gaps = 1/145 (0%)
Query: 868 KQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNP 927
++R +TL+FS AVI RDG LCLM+RVG++R KSH++ A V+A L+K+R T+EGE +
Sbjct: 29 EKRNETLVFSHNAVIAMRDGKLCLMWRVGNLR-KSHLVEAHVRAQLLKSRITSEGEYIPL 87
Query: 928 FLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXX 987
++ + D IFL+ P +VH IDE+SPLYD++ + + FEI+ IL
Sbjct: 88 DQIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEAT 147
Query: 988 XXXXXAKTSYLPSEILWGHRFEPLV 1012
++SYL +EILWGHR+EP++
Sbjct: 148 AMTTQCRSSYLANEILWGHRYEPVL 172
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 103/176 (58%), Gaps = 28/176 (15%)
Query: 336 KQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNP 395
++R +TL+FS AVI RDG LCLM+RVG++R KSH++ A V+A L+K+R T+EGE
Sbjct: 29 EKRNETLVFSHNAVIAMRDGKLCLMWRVGNLR-KSHLVEAHVRAQLLKSRITSEGEY--- 84
Query: 396 FLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESP 455
+ LD + + F S ID+ IFL+ P +VH IDE+SP
Sbjct: 85 ------IPLDQIDINVGFDSG--------------IDR----IFLVSPITIVHEIDEDSP 120
Query: 456 LYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGHRFEPLVRKDK 511
LYD++ + + FEI+ IL ++SYL +EILWGHR+EP++ ++K
Sbjct: 121 LYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGHRYEPVLFEEK 176
>pdb|2XKY|I Chain I, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain
pdb|2XKY|J Chain J, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain
pdb|2XKY|K Chain K, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain
pdb|2XKY|L Chain L, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain
Length = 309
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 93/143 (65%), Gaps = 1/143 (0%)
Query: 870 RTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFL 929
R +TL+FS AVI RDG LCLM+RVG++R KSH++ A V+A L+K+R T+EGE +
Sbjct: 70 RNETLVFSHNAVIAMRDGKLCLMWRVGNLR-KSHLVEAHVRAQLLKSRITSEGEYIPLDQ 128
Query: 930 SELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXX 989
++ + D IFL+ P +VH IDE+SPLYD++ + + FEI+ IL
Sbjct: 129 IDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAM 188
Query: 990 XXXAKTSYLPSEILWGHRFEPLV 1012
++SYL +EILWGHR+EP++
Sbjct: 189 TTQCRSSYLANEILWGHRYEPVL 211
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 101/174 (58%), Gaps = 28/174 (16%)
Query: 338 RTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFL 397
R +TL+FS AVI RDG LCLM+RVG++R KSH++ A V+A L+K+R T+EGE
Sbjct: 70 RNETLVFSHNAVIAMRDGKLCLMWRVGNLR-KSHLVEAHVRAQLLKSRITSEGEY----- 123
Query: 398 SELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESPLY 457
+ LD + + F S ID+ IFL+ P +VH IDE+SPLY
Sbjct: 124 ----IPLDQIDINVGFDSG--------------IDR----IFLVSPITIVHEIDEDSPLY 161
Query: 458 DMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGHRFEPLVRKDK 511
D++ + + FEI+ IL ++SYL +EILWGHR+EP++ ++K
Sbjct: 162 DLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGHRYEPVLFEEK 215
>pdb|2GIX|A Chain A, Cytoplasmic Domain Structure Of Kir2.1 Containing Andersen's
Mutation R218q And Rescue Mutation T309k
pdb|2GIX|B Chain B, Cytoplasmic Domain Structure Of Kir2.1 Containing Andersen's
Mutation R218q And Rescue Mutation T309k
pdb|2GIX|C Chain C, Cytoplasmic Domain Structure Of Kir2.1 Containing Andersen's
Mutation R218q And Rescue Mutation T309k
pdb|2GIX|D Chain D, Cytoplasmic Domain Structure Of Kir2.1 Containing Andersen's
Mutation R218q And Rescue Mutation T309k
Length = 208
Score = 130 bits (326), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 95/145 (65%), Gaps = 1/145 (0%)
Query: 868 KQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNP 927
++R +TL+FS AVI RDG LCLM+RVG++ +KSH++ A V+A L+K+R T+EGE +
Sbjct: 24 EKRNETLVFSHNAVIAMRDGKLCLMWRVGNL-QKSHLVEAHVRAQLLKSRITSEGEYIPL 82
Query: 928 FLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXX 987
++ + D IFL+ P +VH IDE+SPLYD++ + + FEI+ IL
Sbjct: 83 DQIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEAT 142
Query: 988 XXXXXAKTSYLPSEILWGHRFEPLV 1012
++SYL +EILWGHR+EP++
Sbjct: 143 AMTKQCRSSYLANEILWGHRYEPVL 167
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 28/176 (15%)
Query: 336 KQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNP 395
++R +TL+FS AVI RDG LCLM+RVG++ +KSH++ A V+A L+K+R T+EGE
Sbjct: 24 EKRNETLVFSHNAVIAMRDGKLCLMWRVGNL-QKSHLVEAHVRAQLLKSRITSEGEY--- 79
Query: 396 FLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESP 455
+ LD + + F S ID+ IFL+ P +VH IDE+SP
Sbjct: 80 ------IPLDQIDINVGFDSG--------------IDR----IFLVSPITIVHEIDEDSP 115
Query: 456 LYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGHRFEPLVRKDK 511
LYD++ + + FEI+ IL ++SYL +EILWGHR+EP++ ++K
Sbjct: 116 LYDLSKQDIDNADFEIVVILEGMVEATAMTKQCRSSYLANEILWGHRYEPVLFEEK 171
>pdb|2E4F|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of
G-Protein-Gated Inward Rectifier Potassium Channel Kir3.2
Length = 208
Score = 126 bits (317), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 100/147 (68%), Gaps = 5/147 (3%)
Query: 868 KQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNP 927
++R +TL+FS AVI+ RDG LCLMFRVGD+R SHI+ AS++A L+K++ T+EGE +
Sbjct: 26 EKRAETLVFSTHAVISMRDGKLCLMFRVGDLR-NSHIVEASIRAKLIKSKQTSEGEFIP- 83
Query: 928 FLSELKLHIDQYDSD--IFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXX 985
L++ +++ Y D +FL+ P I+ H I+++SP ++++ +L E+ EI+ IL
Sbjct: 84 -LNQTDINVGYYTGDDRLFLVSPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVE 142
Query: 986 XXXXXXXAKTSYLPSEILWGHRFEPLV 1012
A++SY+ SEILWG+RF P++
Sbjct: 143 ATGMTCQARSSYITSEILWGYRFTPVL 169
Score = 114 bits (284), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 100/174 (57%), Gaps = 32/174 (18%)
Query: 336 KQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNP 395
++R +TL+FS AVI+ RDG LCLMFRVGD+R SHI+ AS++A L+K++ T+EGE +
Sbjct: 26 EKRAETLVFSTHAVISMRDGKLCLMFRVGDLR-NSHIVEASIRAKLIKSKQTSEGEFIP- 83
Query: 396 FLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSD--IFLLWPTIVVHRIDEE 453
L T+ +++ Y D +FL+ P I+ H I+++
Sbjct: 84 ------------LNQTD----------------INVGYYTGDDRLFLVSPLIISHEINQQ 115
Query: 454 SPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGHRFEPLV 507
SP ++++ +L E+ EI+ IL A++SY+ SEILWG+RF P++
Sbjct: 116 SPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVL 169
>pdb|3AGW|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of
G-Protein-Gated Inward Rectifier Potassium Channel Kir3.2
In The Absence Of Na+
pdb|3AT8|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain (Na+-Free
Crystal Soaked In 10 Mm Barium Chloride)
pdb|3AT9|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain (Na+-Free
Crystal Soaked In 10 Mm Barium Chloride And 10 Mm
Magnesium Chloride)
pdb|3ATA|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain (Na+-Free
Crystal Soaked In 10 Mm Barium Chloride And 10 Mm
Spermine)
pdb|3ATB|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain (Na+-Free
Crystal Soaked In 10 Mm Gadolinium Chloride)
pdb|3ATD|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain (Na+-Free
Crystal Soaked In 10 Mm Gadolinium Chloride And 10 Mm
Magnesium Chloride)
pdb|3ATE|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain (Na+-Free
Crystal Soaked In 10 Mm Praseodymium (Iii) Acetate)
pdb|3ATF|A Chain A, Crystal Structure Of The Kir3.2 Cytoplasmic Domain (Na+-Free
Crystal Soaked In 200 Mm Cesium Chloride)
Length = 208
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 100/147 (68%), Gaps = 5/147 (3%)
Query: 868 KQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNP 927
++R +TL+FS AVI+ RDG LCLMFRVGD+R SHI+ AS++A L+K++ T+EGE +
Sbjct: 26 EKRAETLVFSTHAVISMRDGKLCLMFRVGDLR-NSHIVEASIRAKLIKSKQTSEGEFIP- 83
Query: 928 FLSELKLHIDQYDSD--IFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXX 985
L++ +++ Y D +FL+ P I+ H I+++SP ++++ +L E+ EI+ IL
Sbjct: 84 -LNQTDINVGYYTGDDRLFLVSPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVE 142
Query: 986 XXXXXXXAKTSYLPSEILWGHRFEPLV 1012
A++SY+ SEILWG+RF P++
Sbjct: 143 ATGMTCQARSSYITSEILWGYRFTPVL 169
Score = 114 bits (284), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 100/174 (57%), Gaps = 32/174 (18%)
Query: 336 KQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNP 395
++R +TL+FS AVI+ RDG LCLMFRVGD+R SHI+ AS++A L+K++ T+EGE +
Sbjct: 26 EKRAETLVFSTHAVISMRDGKLCLMFRVGDLR-NSHIVEASIRAKLIKSKQTSEGEFIP- 83
Query: 396 FLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSD--IFLLWPTIVVHRIDEE 453
L T+ +++ Y D +FL+ P I+ H I+++
Sbjct: 84 ------------LNQTD----------------INVGYYTGDDRLFLVSPLIISHEINQQ 115
Query: 454 SPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGHRFEPLV 507
SP ++++ +L E+ EI+ IL A++SY+ SEILWG+RF P++
Sbjct: 116 SPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVL 169
>pdb|3AUW|B Chain B, Cytoplasmic Domain Of Inward Rectifier Potassium Channel
Kir3.2 In Complex With Cadmium
pdb|3AUW|D Chain D, Cytoplasmic Domain Of Inward Rectifier Potassium Channel
Kir3.2 In Complex With Cadmium
Length = 182
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 99/146 (67%), Gaps = 5/146 (3%)
Query: 869 QRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPF 928
+R +TL+FS AVI+ RDG LCLMFRVGD+R SHI+ AS++A L+K++ T+EGE +
Sbjct: 1 KRAETLVFSTHAVISMRDGKLCLMFRVGDLR-NSHIVEASIRAKLIKSKQTSEGEFIP-- 57
Query: 929 LSELKLHIDQYDSD--IFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXX 986
L++ +++ Y D +FL+ P I+ H I+++SP ++++ +L E+ EI+ IL
Sbjct: 58 LNQTDINVGYYTGDDRLFLVSPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEA 117
Query: 987 XXXXXXAKTSYLPSEILWGHRFEPLV 1012
A++SY+ SEILWG+RF P++
Sbjct: 118 TGMTCQARSSYITSEILWGYRFTPVL 143
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 99/173 (57%), Gaps = 32/173 (18%)
Query: 337 QRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPF 396
+R +TL+FS AVI+ RDG LCLMFRVGD+R SHI+ AS++A L+K++ T+EGE +
Sbjct: 1 KRAETLVFSTHAVISMRDGKLCLMFRVGDLR-NSHIVEASIRAKLIKSKQTSEGEFIP-- 57
Query: 397 LSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSD--IFLLWPTIVVHRIDEES 454
L T+ +++ Y D +FL+ P I+ H I+++S
Sbjct: 58 -----------LNQTD----------------INVGYYTGDDRLFLVSPLIISHEINQQS 90
Query: 455 PLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGHRFEPLV 507
P ++++ +L E+ EI+ IL A++SY+ SEILWG+RF P++
Sbjct: 91 PFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVL 143
>pdb|1U4E|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Girk1 Channel
Length = 212
Score = 123 bits (308), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 89/145 (61%), Gaps = 1/145 (0%)
Query: 868 KQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNP 927
++R +TL+FS AVI+ RDG L LMFRVG++R SH++ A ++ L+K+R T EGE L
Sbjct: 29 EKRAETLMFSEHAVISMRDGKLTLMFRVGNLR-NSHMVSAQIRCKLLKSRQTPEGEFLPL 87
Query: 928 FLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXX 987
EL + +FL+ P + H ID +SP YD++ + + TE+FE++ IL
Sbjct: 88 DQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETT 147
Query: 988 XXXXXAKTSYLPSEILWGHRFEPLV 1012
A+TSY E+LWGHRF P++
Sbjct: 148 GMTCQARTSYTEDEVLWGHRFFPVI 172
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 28/172 (16%)
Query: 336 KQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNP 395
++R +TL+FS AVI+ RDG L LMFRVG++R SH++ A ++ L+K+R T EGE L
Sbjct: 29 EKRAETLMFSEHAVISMRDGKLTLMFRVGNLR-NSHMVSAQIRCKLLKSRQTPEGEFLP- 86
Query: 396 FLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESP 455
LD + FS+ DQ +FL+ P + H ID +SP
Sbjct: 87 --------LDQLELDVGFSTGA--------------DQ----LFLVSPLTICHVIDAKSP 120
Query: 456 LYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGHRFEPLV 507
YD++ + + TE+FE++ IL A+TSY E+LWGHRF P++
Sbjct: 121 FYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVI 172
>pdb|3K6N|A Chain A, Crystal Structure Of The S225e Mutant Kir3.1 Cytoplasmic
Pore Domain
Length = 207
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 88/144 (61%), Gaps = 1/144 (0%)
Query: 869 QRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPF 928
+R +TL+FS AVI+ RDG L LMFRVG++R SH++ A ++ L+K+R T EGE L
Sbjct: 25 ERAETLMFSEHAVISMRDGKLTLMFRVGNLR-NSHMVEAQIRCKLLKSRQTPEGEFLPLD 83
Query: 929 LSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXX 988
EL + +FL+ P + H ID +SP YD++ + + TE+FE++ IL
Sbjct: 84 QLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTG 143
Query: 989 XXXXAKTSYLPSEILWGHRFEPLV 1012
A+TSY E+LWGHRF P++
Sbjct: 144 MTCQARTSYTEDEVLWGHRFFPVI 167
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 93/171 (54%), Gaps = 28/171 (16%)
Query: 337 QRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPF 396
+R +TL+FS AVI+ RDG L LMFRVG++R SH++ A ++ L+K+R T EGE L
Sbjct: 25 ERAETLMFSEHAVISMRDGKLTLMFRVGNLR-NSHMVEAQIRCKLLKSRQTPEGEFLP-- 81
Query: 397 LSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESPL 456
LD + FS+ DQ +FL+ P + H ID +SP
Sbjct: 82 -------LDQLELDVGFSTGA--------------DQ----LFLVSPLTICHVIDAKSPF 116
Query: 457 YDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGHRFEPLV 507
YD++ + + TE+FE++ IL A+TSY E+LWGHRF P++
Sbjct: 117 YDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVI 167
>pdb|1N9P|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of G-protein
Activated Inward Rectifier Potassium Channel 1
Length = 207
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 85/144 (59%), Gaps = 1/144 (0%)
Query: 869 QRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPF 928
+R +TL FS AVI+ RDG L L FRVG++R SH + A ++ L+K+R T EGE L
Sbjct: 25 ERAETLXFSEHAVISXRDGKLTLXFRVGNLR-NSHXVSAQIRCKLLKSRQTPEGEFLPLD 83
Query: 929 LSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXX 988
EL + +FL+ P + H ID +SP YD++ + TE+FE++ IL
Sbjct: 84 QLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSXQTEQFEVVVILEGIVETTG 143
Query: 989 XXXXAKTSYLPSEILWGHRFEPLV 1012
A+TSY E+LWGHRF P++
Sbjct: 144 XTCQARTSYTEDEVLWGHRFFPVI 167
Score = 107 bits (267), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 90/171 (52%), Gaps = 28/171 (16%)
Query: 337 QRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPF 396
+R +TL FS AVI+ RDG L L FRVG++R SH + A ++ L+K+R T EGE L
Sbjct: 25 ERAETLXFSEHAVISXRDGKLTLXFRVGNLR-NSHXVSAQIRCKLLKSRQTPEGEFLP-- 81
Query: 397 LSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESPL 456
LD + FS+ DQ +FL+ P + H ID +SP
Sbjct: 82 -------LDQLELDVGFSTGA--------------DQ----LFLVSPLTICHVIDAKSPF 116
Query: 457 YDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGHRFEPLV 507
YD++ + TE+FE++ IL A+TSY E+LWGHRF P++
Sbjct: 117 YDLSQRSXQTEQFEVVVILEGIVETTGXTCQARTSYTEDEVLWGHRFFPVI 167
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 91.3 bits (225), Expect = 4e-18, Method: Composition-based stats.
Identities = 78/258 (30%), Positives = 124/258 (48%), Gaps = 29/258 (11%)
Query: 766 LALSYPVL-KSFACIW------WLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSI 818
L +S+PV S A ++ + L Y GD NQ+ P FV + FS+
Sbjct: 56 LKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFV----------GAFFFSV 105
Query: 819 ETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSR 878
ET T+GYG T AI ++ VG A TGLVFA+ ARP+ + ++F+R
Sbjct: 106 ETLATVGYGDMHPQTVYAHAI--ATLEIFVGMSGIALSTGLVFARFARPRAK---IMFAR 160
Query: 879 TAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQ 938
A++ +G + LM R + R+ I A K L++ R ++EG L L +LKL ++
Sbjct: 161 HAIVRPFNGRMTLMVRAANARQNV-IAEARAKMRLMRRRESSEGYSLMK-LHDLKLVRNE 218
Query: 939 YDSDIFLL-WPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSY 997
+ IFLL W ++H IDE SPL+ + L + ++ ++ A+ ++
Sbjct: 219 HP--IFLLGWN--MMHVIDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQVMQARHAW 274
Query: 998 LPSEILWGHRFEPLVRSV 1015
+I W HR+ L+ V
Sbjct: 275 EHDDIRWHHRYVDLMSDV 292
Score = 58.2 bits (139), Expect = 4e-08, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 37/187 (19%)
Query: 322 AFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYL 381
A TGLVFA+ ARP+ + ++F+R A++ +G + LM R + R+ I A K L
Sbjct: 139 ALSTGLVFARFARPRAK---IMFARHAIVRPFNGRMTLMVRAANARQNV-IAEARAKMRL 194
Query: 382 VKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLL 441
++ R ++EG L L +LK+ VR P IFLL
Sbjct: 195 MRRRESSEGYSLMK-LHDLKL------------------VRNEHP-----------IFLL 224
Query: 442 -WPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWG 500
W ++H IDE SPL+ + L + ++ ++ A+ ++ +I W
Sbjct: 225 GWN--MMHVIDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQVMQARHAWEHDDIRWH 282
Query: 501 HRFEPLV 507
HR+ L+
Sbjct: 283 HRYVDLM 289
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 87.8 bits (216), Expect = 4e-17, Method: Composition-based stats.
Identities = 76/258 (29%), Positives = 123/258 (47%), Gaps = 29/258 (11%)
Query: 766 LALSYPVL-KSFACIW------WLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSI 818
L +S+PV S A ++ + L Y GD NQ+ P FV + FS+
Sbjct: 56 LKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFV----------GAFFFSV 105
Query: 819 ETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSR 878
ET T+GYG T AI ++ VG A TGLVFA+ ARP+ + ++F+R
Sbjct: 106 ETLATVGYGDMHPQTVYAHAI--ATLEIFVGMSGIALSTGLVFARFARPRAK---IMFAR 160
Query: 879 TAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQ 938
A++ +G + LM R + R+ I A K L++ ++EG L + +LKL ++
Sbjct: 161 HAIVRPFNGRMTLMVRAANARQNV-IAEARAKMRLMRREHSSEGYSLMK-IHDLKLVRNE 218
Query: 939 YDSDIFLL-WPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSY 997
+ IFLL W ++H IDE SPL+ + L + ++ ++ A+ ++
Sbjct: 219 HP--IFLLGWN--MMHVIDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQVMQARHAW 274
Query: 998 LPSEILWGHRFEPLVRSV 1015
+I W HR+ L+ V
Sbjct: 275 EHDDIRWHHRYVDLMSDV 292
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 37/187 (19%)
Query: 322 AFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYL 381
A TGLVFA+ ARP+ + ++F+R A++ +G + LM R + R+ I A K L
Sbjct: 139 ALSTGLVFARFARPRAK---IMFARHAIVRPFNGRMTLMVRAANARQNV-IAEARAKMRL 194
Query: 382 VKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLL 441
++ ++EG L +K+ + L + + + IFLL
Sbjct: 195 MRREHSSEGYSL------MKI------------------------HDLKLVRNEHPIFLL 224
Query: 442 -WPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWG 500
W ++H IDE SPL+ + L + ++ ++ A+ ++ +I W
Sbjct: 225 GWN--MMHVIDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQVMQARHAWEHDDIRWH 282
Query: 501 HRFEPLV 507
HR+ L+
Sbjct: 283 HRYVDLM 289
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 10/201 (4%)
Query: 808 NSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARP 867
SF + FS++T TIGYG P A L+ ++++ G + A L++A+ RP
Sbjct: 81 GSFTDAFFFSVQTMATIGYGK--LIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 138
Query: 868 KQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNP 927
T +LFS VI+ +G LM R+ ++R ++ II A V LV++ + EG V
Sbjct: 139 ---TAGVLFSSRMVISDFEGKPTLMMRLANLRIEA-IIEADVHLVLVRSEVSQEGMVFRR 194
Query: 928 FLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXX 987
F L + + S IF L T V+H ID SP+Y + L E + +
Sbjct: 195 FH---DLTLTRSRSPIFSLSWT-VMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAF 250
Query: 988 XXXXXAKTSYLPSEILWGHRF 1008
A+ +Y EI+WG F
Sbjct: 251 AQNVHARHAYSCDEIIWGGHF 271
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 73/182 (40%), Gaps = 35/182 (19%)
Query: 322 AFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYL 381
A L++A+ RP T +LFS VI+ +G LM R+ ++R ++ II A V L
Sbjct: 125 AVAASLIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRLANLRIEA-IIEADVHLVL 180
Query: 382 VKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLL 441
V++ + EG V F + L + + S IF L
Sbjct: 181 VRSEVSQEGMVFRRF------------------------------HDLTLTRSRSPIFSL 210
Query: 442 WPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGH 501
T V+H ID SP+Y + L E + + A+ +Y EI+WG
Sbjct: 211 SWT-VMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGG 269
Query: 502 RF 503
F
Sbjct: 270 HF 271
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 10/201 (4%)
Query: 808 NSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARP 867
SF + FS++T TIGYG P A L+ ++++ G + A L++A+ RP
Sbjct: 81 GSFTDAFFFSVQTMATIGYGK--LIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 138
Query: 868 KQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNP 927
T +LFS VI+ +G LM R+ ++R ++ II A V LV++ + EG V
Sbjct: 139 ---TAGVLFSSRMVISDFEGKPTLMMRLANLRIEA-IIEADVHLVLVRSEISQEGMVFRR 194
Query: 928 FLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXX 987
F L + + S IF L T V+H ID SP+Y + L E + +
Sbjct: 195 FH---DLTLTRSRSPIFSLSWT-VMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAF 250
Query: 988 XXXXXAKTSYLPSEILWGHRF 1008
A+ +Y EI+WG F
Sbjct: 251 AQNVHARHAYSCDEIIWGGHF 271
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 73/182 (40%), Gaps = 35/182 (19%)
Query: 322 AFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYL 381
A L++A+ RP T +LFS VI+ +G LM R+ ++R ++ II A V L
Sbjct: 125 AVAASLIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRLANLRIEA-IIEADVHLVL 180
Query: 382 VKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLL 441
V++ + EG V F + L + + S IF L
Sbjct: 181 VRSEISQEGMVFRRF------------------------------HDLTLTRSRSPIFSL 210
Query: 442 WPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGH 501
T V+H ID SP+Y + L E + + A+ +Y EI+WG
Sbjct: 211 SWT-VMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGG 269
Query: 502 RF 503
F
Sbjct: 270 HF 271
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 10/201 (4%)
Query: 808 NSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARP 867
SF + FS++T TIGYG P A L+ ++++ G + A L++A+ RP
Sbjct: 81 GSFTDAFFFSVQTMATIGYGK--LIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 138
Query: 868 KQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNP 927
T +LFS VI+ +G LM R+ ++R + II A V LV++ + EG V
Sbjct: 139 ---TAGVLFSSRMVISDFEGKPTLMMRLANLRIE-QIIEADVHLVLVRSEISQEGMVFRR 194
Query: 928 FLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXX 987
F L + + S IF L T V+H ID SP+Y + L E + +
Sbjct: 195 FH---DLTLTRSRSPIFSLSWT-VMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAF 250
Query: 988 XXXXXAKTSYLPSEILWGHRF 1008
A+ +Y EI+WG F
Sbjct: 251 AQNVHARHAYSCDEIIWGGHF 271
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 35/182 (19%)
Query: 322 AFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYL 381
A L++A+ RP T +LFS VI+ +G LM R+ ++R + II A V L
Sbjct: 125 AVAASLIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRLANLRIE-QIIEADVHLVL 180
Query: 382 VKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLL 441
V++ + EG V F + L + + S IF L
Sbjct: 181 VRSEISQEGMVFRRF------------------------------HDLTLTRSRSPIFSL 210
Query: 442 WPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGH 501
T V+H ID SP+Y + L E + + A+ +Y EI+WG
Sbjct: 211 SWT-VMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGG 269
Query: 502 RF 503
F
Sbjct: 270 HF 271
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 10/201 (4%)
Query: 808 NSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARP 867
SF + FS++T TIGYG P A L+ ++++ G + A L++A+ RP
Sbjct: 81 GSFTDAFFFSVQTMATIGYGK--LIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 138
Query: 868 KQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNP 927
T +LFS VI+ +G LM R+ ++R + II A V LV++ + EG V
Sbjct: 139 ---TAGVLFSSRMVISDFEGKPTLMMRLANLRIE-QIIEADVHLVLVRSEISQEGMVFRR 194
Query: 928 FLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXX 987
F L + + S IF L T V+H ID SP+Y + L E + +
Sbjct: 195 FH---DLTLTRSRSPIFSLSWT-VMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAF 250
Query: 988 XXXXXAKTSYLPSEILWGHRF 1008
A+ +Y EI+WG F
Sbjct: 251 AQNVHARHAYSCDEIIWGGHF 271
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 35/182 (19%)
Query: 322 AFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYL 381
A L++A+ RP T +LFS VI+ +G LM R+ ++R + II A V L
Sbjct: 125 AVAASLIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRLANLRIE-QIIEADVHLVL 180
Query: 382 VKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLL 441
V++ + EG V F + L + + S IF L
Sbjct: 181 VRSEISQEGMVFRRF------------------------------HDLTLTRSRSPIFSL 210
Query: 442 WPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGH 501
T V+H ID SP+Y + L E + + A+ +Y EI+WG
Sbjct: 211 SWT-VMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGG 269
Query: 502 RF 503
F
Sbjct: 270 HF 271
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 114/255 (44%), Gaps = 29/255 (11%)
Query: 762 FSEQLALSYPVLKSFACIWWL-------LAYTH-GDVLSENQNNPQFVPCVIGVNSFASS 813
+ + L +S+PV + +L LAY GDV+ EN SF +
Sbjct: 38 YHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVI-ENARP----------GSFTDA 86
Query: 814 LLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQT 873
FS++T TIGYG P A L+ ++++ G + A L++A+ RP T
Sbjct: 87 FFFSVQTMATIGYGK--LIPIGPLANTLVTLEALCGMLGLAVAARLIYARFTRP---TAG 141
Query: 874 LLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELK 933
+LFS VI+ +G LM R+ ++R + II A V LV++ + EG V F
Sbjct: 142 VLFSSRMVISDFEGKPTLMMRLANLRIE-QIIEADVHLVLVRSEISQEGMVFRRFH---D 197
Query: 934 LHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXA 993
L + + S IF L T V+H ID SP+Y + L E + + A
Sbjct: 198 LTLTRSRSPIFSLSWT-VMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHA 256
Query: 994 KTSYLPSEILWGHRF 1008
+ +Y EI+WG F
Sbjct: 257 RHAYSCDEIIWGGHF 271
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 35/177 (19%)
Query: 327 LVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKART 386
L++A+ RP T +LFS VI+ +G LM R+ ++R + II A V LV++
Sbjct: 130 LIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRLANLRIE-QIIEADVHLVLVRSEI 185
Query: 387 TAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIV 446
+ EG V F + L + + S IF L T V
Sbjct: 186 SQEGMVFRRF------------------------------HDLTLTRSRSPIFSLSWT-V 214
Query: 447 VHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGHRF 503
+H ID SP+Y + L E + + A+ +Y EI+WG F
Sbjct: 215 MHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGGHF 271
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 93/201 (46%), Gaps = 10/201 (4%)
Query: 808 NSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARP 867
SF + FS++T TIGYG P A L+ ++++ G + A L++A+ RP
Sbjct: 81 GSFTDAFFFSVQTMATIGYGK--LIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 138
Query: 868 KQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNP 927
T +LFS VI+ +G LM R+ ++R + II A V LV++ + EG V
Sbjct: 139 ---TAGVLFSSRMVISDFEGKPTLMMRLANLRIE-QIIEADVHLVLVRSEISQEGMVFRR 194
Query: 928 FLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXX 987
F + + S IF L T V+H ID SP+Y + L E + +
Sbjct: 195 FHDLTR---TRSRSPIFSLSWT-VMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAF 250
Query: 988 XXXXXAKTSYLPSEILWGHRF 1008
A+ +Y EI+WG F
Sbjct: 251 AQNVHARHAYSCDEIIWGGHF 271
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 71/182 (39%), Gaps = 35/182 (19%)
Query: 322 AFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYL 381
A L++A+ RP T +LFS VI+ +G LM R+ ++R + II A V L
Sbjct: 125 AVAASLIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRLANLRIE-QIIEADVHLVL 180
Query: 382 VKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLL 441
V++ + EG V F T T R S IF L
Sbjct: 181 VRSEISQEGMVFR-----------------RFHDLTRTRSR-------------SPIFSL 210
Query: 442 WPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGH 501
T V+H ID SP+Y + L E + + A+ +Y EI+WG
Sbjct: 211 SWT-VMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGG 269
Query: 502 RF 503
F
Sbjct: 270 HF 271
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 33.9 bits (76), Expect = 0.77, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 809 SFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVA 865
S+ +L +S+ET T+GYG P +W CV ++V + GLVFA VA
Sbjct: 84 SYPDALWWSVETATTVGYGDLY-----PVTLWGRCV-AVVVMVAGITSYGLVFAAVA 134
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 35 KDLPDQVYLSGLPDSECLALYYFKSKYKVPILYTHHFLCVLKIVPRCYLPISVNKIKKKL 94
+D+ + YL+ E LY +S+Y ++YT+ L + + P LPI + + K
Sbjct: 86 EDMANMTYLN-----EASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKY 140
Query: 95 RG 96
RG
Sbjct: 141 RG 142
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 35 KDLPDQVYLSGLPDSECLALYYFKSKYKVPILYTHHFLCVLKIVPRCYLPISVNKIKKKL 94
+D+ + YL+ E LY +S+Y ++YT+ L + + P LPI + + K
Sbjct: 86 EDMANMTYLN-----EASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKY 140
Query: 95 RG 96
RG
Sbjct: 141 RG 142
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 35 KDLPDQVYLSGLPDSECLALYYFKSKYKVPILYTHHFLCVLKIVPRCYLPISVNKIKKKL 94
+D+ + YL+ E LY +S+Y ++YT+ L + + P LPI + + K
Sbjct: 82 EDMANMTYLN-----EASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKY 136
Query: 95 RG 96
RG
Sbjct: 137 RG 138
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 35 KDLPDQVYLSGLPDSECLALYYFKSKYKVPILYTHHFLCVLKIVPRCYLPISVNKIKKKL 94
+D+ + YL+ E LY +S+Y ++YT+ L + + P LPI + + K
Sbjct: 81 EDMANMTYLN-----EASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKY 135
Query: 95 RG 96
RG
Sbjct: 136 RG 137
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 35 KDLPDQVYLSGLPDSECLALYYFKSKYKVPILYTHHFLCVLKIVPRCYLPISVNKIKKKL 94
+D+ + YL+ E LY +S+Y ++YT+ L + + P LPI + + K
Sbjct: 86 EDMANMTYLN-----EASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKY 140
Query: 95 RG 96
RG
Sbjct: 141 RG 142
>pdb|1ZT7|A Chain A, Crystal Structure Of Class I Mhc H-2kk In Complex With A
Nonapeptide
pdb|1ZT7|C Chain C, Crystal Structure Of Class I Mhc H-2kk In Complex With A
Nonapeptide
Length = 276
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 1473 IFQSNLSTNANHHIESQSSRHDFENALGCSVRDEMKLYEDLEKKSLQDCTF 1523
IF+ NL T ++ +S H F+ GC V + +L E+ + C +
Sbjct: 74 IFRVNLRTALRYYNQSAGGSHTFQRMYGCEVGSDWRLLRGYEQYAYDGCDY 124
>pdb|1ZT1|A Chain A, Crystal Structure Of Class I Mhc H-2kk In Complex With An
Octapeptide
Length = 277
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 1473 IFQSNLSTNANHHIESQSSRHDFENALGCSVRDEMKLYEDLEKKSLQDCTF 1523
IF+ NL T ++ +S H F+ GC V + +L E+ + C +
Sbjct: 74 IFRVNLRTALRYYNQSAGGSHTFQRMYGCEVGSDWRLLRGYEQYAYDGCDY 124
>pdb|3LN7|A Chain A, Crystal Structure Of A Bifunctional Glutathione Synthetase
From Pasteurella Multocida
pdb|3LN7|B Chain B, Crystal Structure Of A Bifunctional Glutathione Synthetase
From Pasteurella Multocida
Length = 757
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 19/107 (17%)
Query: 319 RLQAFMTGLVFAKVARPKQRTQTLLFS------RTAVINQRDGHLCLMFRVGDMREKSHI 372
+ QAF + + TQ LLF T ++++ D LCL + GD HI
Sbjct: 415 KAQAFERFYALSAFDNXELSTQALLFDVIQKGIHTEILDENDQFLCLKY--GD-----HI 467
Query: 373 IGASVKAYLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTST 419
Y+ T+ ++P + E KV+ VLQ F+ S
Sbjct: 468 ------EYVKNGNXTSHDSYISPLIXENKVVTKKVLQKAGFNVPQSV 508
>pdb|3PWU|A Chain A, An Immmunodominant Ctl Epitope From Rinderpest Virus
Presented By Cattle Mhc Class I Molecule N01801(Bola-A11)
pdb|3PWV|A Chain A, An Immmunodominant Ctl Epitope From Rinderpest Virus
Presented By Cattle Mhc Class I Molecule N01801
(Bola-A11)
pdb|3PWV|D Chain D, An Immmunodominant Ctl Epitope From Rinderpest Virus
Presented By Cattle Mhc Class I Molecule N01801
(Bola-A11)
Length = 274
Score = 30.8 bits (68), Expect = 6.0, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 17/67 (25%)
Query: 1471 AGIFQSNLSTNANHHIESQSSRHDFENALGCSV-----------------RDEMKLYEDL 1513
A IF++NL+T ++ +S++ H F+ GC V RD + L EDL
Sbjct: 70 AQIFRANLNTALGYYNQSEAGSHTFQEMYGCYVGPDGRLLLGFMQFAYDGRDYIALNEDL 129
Query: 1514 EKKSLQD 1520
+ D
Sbjct: 130 RSWTAAD 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,404,821
Number of Sequences: 62578
Number of extensions: 1775153
Number of successful extensions: 3526
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3374
Number of HSP's gapped (non-prelim): 99
length of query: 1527
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1416
effective length of database: 8,027,179
effective search space: 11366485464
effective search space used: 11366485464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)