Query psy4010
Match_columns 1527
No_of_seqs 542 out of 1059
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 23:06:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3827|consensus 100.0 2E-106 5E-111 906.3 24.9 322 102-541 23-346 (400)
2 KOG3827|consensus 100.0 7E-94 1.5E-98 805.4 21.2 315 640-1037 23-341 (400)
3 COG5383 Uncharacterized protei 100.0 3.8E-94 8.2E-99 776.0 12.7 285 1105-1523 2-286 (295)
4 PF01007 IRK: Inward rectifier 100.0 2.4E-83 5.2E-88 726.5 18.7 315 108-540 1-316 (336)
5 PF01007 IRK: Inward rectifier 100.0 2.1E-82 4.6E-87 718.8 22.4 309 646-1037 1-312 (336)
6 PF07063 DUF1338: Domain of un 100.0 2.7E-31 5.9E-36 298.7 2.9 104 1114-1241 1-106 (302)
7 COG5383 Uncharacterized protei 99.4 2.7E-14 5.8E-19 157.3 -2.0 133 1102-1234 158-295 (295)
8 PF07063 DUF1338: Domain of un 98.9 4.3E-10 9.3E-15 128.4 1.5 94 159-262 161-267 (302)
9 KOG3713|consensus 98.4 1.7E-07 3.7E-12 111.6 3.7 63 806-870 374-436 (477)
10 PF07885 Ion_trans_2: Ion chan 98.3 6.7E-07 1.5E-11 82.8 4.9 58 807-866 22-79 (79)
11 KOG1545|consensus 97.7 3.3E-06 7.2E-11 97.5 -2.5 64 805-870 389-452 (507)
12 PLN03192 Voltage-dependent pot 97.6 3.3E-05 7.2E-10 98.7 3.5 91 772-870 212-309 (823)
13 KOG1419|consensus 97.6 4.2E-05 9E-10 92.5 3.7 87 764-862 232-320 (654)
14 PRK10537 voltage-gated potassi 97.5 9.5E-05 2.1E-09 88.0 5.9 54 806-861 165-218 (393)
15 KOG4390|consensus 97.3 1.5E-05 3.3E-10 92.6 -4.8 63 805-869 352-414 (632)
16 KOG0498|consensus 96.6 0.0023 5E-08 81.2 6.0 91 775-870 247-353 (727)
17 KOG1418|consensus 96.4 0.0034 7.4E-08 72.0 4.8 49 807-857 113-161 (433)
18 KOG3684|consensus 95.1 0.01 2.3E-07 71.5 2.1 56 807-864 285-340 (489)
19 KOG4404|consensus 93.9 0.038 8.2E-07 64.7 2.9 41 808-850 79-119 (350)
20 KOG0500|consensus 93.6 0.046 1E-06 66.7 3.1 86 776-864 144-235 (536)
21 KOG1418|consensus 92.4 0.068 1.5E-06 61.5 2.0 48 808-857 241-296 (433)
22 PF00520 Ion_trans: Ion transp 90.6 0.17 3.6E-06 51.8 2.5 57 804-860 140-200 (200)
23 KOG4404|consensus 88.8 0.5 1.1E-05 55.7 4.8 59 808-866 185-249 (350)
24 KOG1420|consensus 87.7 0.37 8.1E-06 59.6 2.9 57 807-865 286-342 (1103)
25 KOG0499|consensus 87.1 0.52 1.1E-05 59.0 3.6 58 806-866 400-457 (815)
26 KOG0501|consensus 84.7 0.94 2E-05 56.6 4.2 55 808-864 422-476 (971)
27 PF07077 DUF1345: Protein of u 78.7 1.4 3.1E-05 48.3 2.6 75 773-859 100-180 (180)
28 KOG3193|consensus 75.8 1.1 2.4E-05 55.4 0.9 25 808-832 216-240 (1087)
29 TIGR02588 conserved hypothetic 53.3 2E+02 0.0043 30.7 11.7 65 848-914 10-75 (122)
30 PRK03573 transcriptional regul 24.8 47 0.001 34.3 2.1 18 1263-1280 89-106 (144)
31 TIGR00933 2a38 potassium uptak 24.3 1.1E+02 0.0024 37.3 5.2 60 808-867 230-300 (390)
32 TIGR02588 conserved hypothetic 23.8 6.6E+02 0.014 27.0 9.9 63 318-382 12-75 (122)
33 PRK11716 DNA-binding transcrip 23.5 43 0.00094 36.6 1.6 17 1261-1277 28-44 (269)
34 KOG0500|consensus 23.4 64 0.0014 40.8 3.1 33 141-175 128-160 (536)
35 PRK05529 cell division protein 22.6 93 0.002 36.0 4.0 48 1162-1209 205-255 (255)
36 TIGR01429 AMP_deaminase AMP de 22.3 48 0.0011 43.0 1.9 52 1181-1237 211-264 (611)
37 COG3771 Predicted membrane pro 21.0 89 0.0019 31.7 2.9 21 146-166 47-67 (97)
38 PLN03055 AMP deaminase; Provis 20.3 71 0.0015 41.5 2.7 140 1081-1237 82-243 (602)
No 1
>KOG3827|consensus
Probab=100.00 E-value=2.1e-106 Score=906.26 Aligned_cols=322 Identities=43% Similarity=0.726 Sum_probs=295.7
Q ss_pred ccccceeccCCceeeEeccchhhhhhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhcccc
Q psy4010 102 KLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIVSYDTYQTLLDTHSLVADIVCFKT 181 (1527)
Q Consensus 102 ~~r~R~V~K~G~cNV~~~nv~~~~~ryl~DiFTTLVDlrWRw~LliF~~sFl~SWlvFa~iyw~La~~H~llaDIv~f~~ 181 (1527)
|.|+|+|.|||+|||+++|+++++.|||+||||||||+||||||++|+++|++||++||.+||+||+.||++.. .
T Consensus 23 r~r~R~v~K~G~cNV~~~nv~~~~~rYl~DifTTlVD~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~---~-- 97 (400)
T KOG3827|consen 23 RKRRRFVKKDGHCNVQFKNVPRKRLRYLQDIFTTLVDLKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEP---D-- 97 (400)
T ss_pred hhhhhhcccCCceeEEEcCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc---C--
Confidence 56999999999999999999999999999999999999999999999999999999999999999999985531 0
Q ss_pred CcccCCCCCCcchhhHHHHHhhhcccCCcccccccccCCCCCCcceeeeeccccccccccccCCCCccceeeeeeeeEEE
Q psy4010 182 PHINHLTPSTLDIDRVQDRMVAQMSRHGSCVPKAVIEGPPRREVPILLRQTSFKALTEDIAVPGRDVGSISIFNGQFFLR 261 (1527)
Q Consensus 182 ~hiNHltPrtLDId~~q~~m~~~~~~~g~cv~k~~ieGPp~~~~PillrqtSF~Al~e~i~f~~~~~g~~s~f~gaFlfs 261 (1527)
| |. .+|+||+.| ++|| +||||||
T Consensus 98 ----~--~~---------------~~~tpCV~n----------------V~sf--------------------~sAFLFS 120 (400)
T KOG3827|consen 98 ----P--PG---------------ENHTPCVMN----------------VHSF--------------------TSAFLFS 120 (400)
T ss_pred ----C--CC---------------cCCCcceee----------------ccch--------------------hhhheee
Confidence 0 10 245666554 5555 5799999
Q ss_pred eeeeeeeeeeeccccccccccccccccccccceeeeeccccchhhh-hhhhhhhhhHHHHHHHHHHHHHhhhcCCCCCCC
Q psy4010 262 GLTEGTVTAKVLSSRNRREKEDRIGSDEIPVCGVQYVGDYCTLCHR-HGKQANLNDLSRLQAFMTGLVFAKVARPKQRTQ 340 (1527)
Q Consensus 262 ~eTqtTig~~~~~~~~~~Etq~tigteecp~yG~r~vt~~C~~~i~-l~~Q~ilg~~~lIdAfmtGLVFAKfSRPkkRa~ 340 (1527)
+||||||| ||+|+||++||+||+ +++|+|+| ++|||||+|++|||||||||||+
T Consensus 121 iETQtTIG-----------------------YG~R~vTeeCP~aI~ll~~Q~I~g--~ii~afm~G~i~aKiarPkKRAe 175 (400)
T KOG3827|consen 121 IETQTTIG-----------------------YGFRYVTEECPEAIFLLVLQSILG--VIINAFMVGAIFAKIARPKKRAE 175 (400)
T ss_pred eeeeeeee-----------------------ccccccCccChHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCchhhhh
Confidence 99998877 799999999999999 57999998 99999999999999999999999
Q ss_pred eeeeccceEEeecCCeEEEEEEEeeCCCCceeeecEEEEEEEEeeecCCCcccccchhhHHHHHhhhhcccccccccccc
Q psy4010 341 TLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTY 420 (1527)
Q Consensus 341 TI~FSk~AVIs~rDGklcLMFRVgNlR~ks~LIea~VRa~Lir~~~T~EGE~i~~~~~eLkL~ld~~~q~~e~~~~ts~~ 420 (1527)
||+||++||||.||||+||||||||+| |||||||+||++|++.++|+|||+++.++.++++
T Consensus 176 Tl~FS~~AVI~~RDGkLCLmfRVgdlR-kShliea~Vraqlik~~~T~EGE~ipl~q~di~v------------------ 236 (400)
T KOG3827|consen 176 TLIFSDHAVIALRDGKLCLMFRVGDLR-KSHLIEAHVRAQLIKTRVTKEGEVIPLHQTDIDV------------------ 236 (400)
T ss_pred eeeeccceEEEeeCCceEEEEEecCcc-ccceeeEEEEEEEEEEcccCCcceeecceEEeec------------------
Confidence 999999999999999999999999999 8999999999999999999999999977655543
Q ss_pred cccCCcccccccccCCceeeecceEEEEecCCCCcCcccCHhhhccCCEEEEEEEEEeeccccceEEEeeecCCCccccC
Q psy4010 421 VRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWG 500 (1527)
Q Consensus 421 vR~gtp~~L~ld~~~~~lfLiwPlTVvH~IDe~SPLY~~T~edL~~~dfEIVViLEG~DESTGqTvQARTSYlp~EILWG 500 (1527)
+.|.+++++||+||+||+|+||++||||++++++|.++||||||+|||++|+||||+||||||+|+||+||
T Consensus 237 ---------g~d~g~d~~Flv~Plti~H~IDe~SPLy~l~~~~l~~~~FEiVViLeG~VEsTg~t~QaRTSYlp~EILWG 307 (400)
T KOG3827|consen 237 ---------GFDTGSDRLFLVWPLTIYHVIDETSPLYDLSRQDLAKADFEIVVILEGTVEATGMTTQARTSYLPSEILWG 307 (400)
T ss_pred ---------ccCCCcCceEEEeceEEEEEcCCCCchhhhChhhhhhcceEEEEEEEeEEecccceeecccccchHHhhhc
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeccceecC-CCcccccccccccchhhhhhchhhhhhhccc
Q psy4010 501 HRFEPLVRKD-KPCDKPHFKSYDDLINEALLESNIQHAKSKS 541 (1527)
Q Consensus 501 hRF~piV~~d-kg~y~IDfskFd~viP~~l~~~~~~~A~~~~ 541 (1527)
|||+|+++.+ +|.|+|||++||++++.+ +|.|+||+--
T Consensus 308 hRF~pvv~~~~~g~Y~VDy~~F~~T~~V~---tP~csa~~l~ 346 (400)
T KOG3827|consen 308 HRFVPVVTLEKNGKYEVDYSNFHKTYEVP---TPLCSAKELD 346 (400)
T ss_pred cccceeeEeccCCcEEEEhHHcCceeecc---CCCcChhhhh
Confidence 9999999997 799999999999999998 9999999443
No 2
>KOG3827|consensus
Probab=100.00 E-value=7e-94 Score=805.39 Aligned_cols=315 Identities=52% Similarity=0.912 Sum_probs=303.0
Q ss_pred cccCceeccCCceeEEEcCcccccccccccccceeeecchhHHhhh-hhcccccccccccccccCCcccccchhhhhhhh
Q psy4010 640 KLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLL-ALSYPVLKSTCPAQFKLLSPEHNWARFSRFRLH 718 (1527)
Q Consensus 640 ~~~~R~i~k~G~~ni~~~~~~~~~~~~~~Dif~tlv~~~Wr~~~l~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1527)
+.++|++.|||+|||.+.|+++++++||+||||||||++|||+|++ +++|
T Consensus 23 r~r~R~v~K~G~cNV~~~nv~~~~~rYl~DifTTlVD~kWR~~lliF~~sf----------------------------- 73 (400)
T KOG3827|consen 23 RKRRRFVKKDGHCNVQFKNVPRKRLRYLQDIFTTLVDLKWRWMLLIFSLSF----------------------------- 73 (400)
T ss_pred hhhhhhcccCCceeEEEcCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-----------------------------
Confidence 5688999999999999999998999999999999999999999999 9999
Q ss_pred hhhccccccccccCCCcccccccccCCCCCCCCCCcccceEeechhhhhcccCceeeehhhHHHHhhhcCCccccCCCCC
Q psy4010 719 LVAASVHTSNQVAKHPNVHISRALGCSSPMSLRPGKIENRYGSFSEQLALSYPVLKSFACIWWLLAYTHGDVLSENQNNP 798 (1527)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~l~~~villFAlIYylIa~~hGDl~~~~~~~~ 798 (1527)
++|| ++||++||+||+.|||+...+ .+.
T Consensus 74 ----------------------------------------~~SW-----------l~Fg~iwwlIA~~hGDL~~~~-~~~ 101 (400)
T KOG3827|consen 74 ----------------------------------------VLSW-----------LFFGVIWWLIAYAHGDLEPDP-PGE 101 (400)
T ss_pred ----------------------------------------HHHH-----------HHHHHHHHHHHHhhCCcccCC-CCc
Confidence 9999 999999999999999998543 356
Q ss_pred CCccccccccchhhHHHhheeeeeeeccCCCccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccceeeecc
Q psy4010 799 QFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSR 878 (1527)
Q Consensus 799 ~~~pCv~~v~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~lLv~lQalvGlLl~A~ltGlVFAKfSRPkkRA~TIlFSk 878 (1527)
+|+||+.++++|++||+||+|||||||||.++++++||.|++++++|+++|++++|||+|++|||++||||||+||+||+
T Consensus 102 ~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKRAeTl~FS~ 181 (400)
T KOG3827|consen 102 NHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKRAETLIFSD 181 (400)
T ss_pred CCCcceeeccchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhheeeecc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCeEEEEEEEeeCCCCceeEeeEEEEEEEEeEecCCCceecceeeeeeeeecccCCceeeecceEEEEecCCC
Q psy4010 879 TAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRIDEE 958 (1527)
Q Consensus 879 ~AVIs~rDG~~cLMFRVaNlR~ks~LIea~Vrv~Lir~~~T~EGE~~r~~q~~L~L~rd~~~~~~fL~lPwTVvHvIDE~ 958 (1527)
+||||.|||++||||||||+| +++||||+||++|++.++|+|||.++.+|.+++++.|.+.|++||+||+||+|+|||+
T Consensus 182 ~AVI~~RDGkLCLmfRVgdlR-kShliea~Vraqlik~~~T~EGE~ipl~q~di~vg~d~g~d~~Flv~Plti~H~IDe~ 260 (400)
T KOG3827|consen 182 HAVIALRDGKLCLMFRVGDLR-KSHLIEAHVRAQLIKTRVTKEGEVIPLHQTDIDVGFDTGSDRLFLVWPLTIYHVIDET 260 (400)
T ss_pred ceEEEeeCCceEEEEEecCcc-ccceeeEEEEEEEEEEcccCCcceeecceEEeecccCCCcCceEEEeceEEEEEcCCC
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCHhhhccCCEEEEEEEEeeeccccceEEEeecccCCccccCCccccceecccc---ceeeeeeecccccCcccc
Q psy4010 959 SPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVRSVSK---QLVTSSIHMFVPNGLSKE 1035 (1527)
Q Consensus 959 SPLY~lT~edL~~~dfEIVV~LeG~DEsTgqtVqARtSY~~~EIlWGhRF~pmI~~d~k---~iD~~~Fh~v~P~~l~~~ 1035 (1527)
||||++++++|.+++|||||+|+|+.|+||+|+|||+||+|+||+|||||+|++++.++ ++|+++||.+++.+ .-.
T Consensus 261 SPLy~l~~~~l~~~~FEiVViLeG~VEsTg~t~QaRTSYlp~EILWGhRF~pvv~~~~~g~Y~VDy~~F~~T~~V~-tP~ 339 (400)
T KOG3827|consen 261 SPLYDLSRQDLAKADFEIVVILEGTVEATGMTTQARTSYLPSEILWGHRFVPVVTLEKNGKYEVDYSNFHKTYEVP-TPL 339 (400)
T ss_pred CchhhhChhhhhhcceEEEEEEEeEEecccceeecccccchHHhhhccccceeeEeccCCcEEEEhHHcCceeecc-CCC
Confidence 99999999999999999999999999999999999999999999999999999998743 59999999999887 334
Q ss_pred cc
Q psy4010 1036 CK 1037 (1527)
Q Consensus 1036 c~ 1037 (1527)
|.
T Consensus 340 cs 341 (400)
T KOG3827|consen 340 CS 341 (400)
T ss_pred cC
Confidence 54
No 3
>COG5383 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=3.8e-94 Score=776.00 Aligned_cols=285 Identities=47% Similarity=0.793 Sum_probs=254.7
Q ss_pred CCCCChhHHHHHHHHHHHHhhhhhcCChhhHHHHHHHhcHHHHhcCCcccccccccccccccccccccccCCHHHHHHHH
Q psy4010 1105 GDVMSPNAIRKLFSQSMSEMYKKQVPQYSTLLELVRQVNLDTLANSGKLDEMSAEDLERLNEERHGAIRLGTPEELYNIR 1184 (1527)
Q Consensus 1105 ~~~~~~~~~R~~f~~ams~mY~~EVP~Y~~L~~lv~~vn~~~l~~~~~~~~~~~~~~~rl~~ERHGAIR~Gt~~El~~~~ 1184 (1527)
..+|++|+||++||+|||+||++|||+|||||+||++||.++|.++..+.+ +|+|+||++|||||||||||+||+|||
T Consensus 2 ~~~~~~d~ir~~fs~ams~my~~evp~ygtl~elva~vn~~~l~~~~~~~~--~~~l~r~~~erhgairvgt~~el~~~r 79 (295)
T COG5383 2 QKFVSPDEIRAAFSAAMSAMYQEEVPAYGTLLELVADVNSDVLTRHRRLER--TDSLERLTEERHGAIRVGTAAELSMLR 79 (295)
T ss_pred CCccCHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhHHHHHHHHHHHh--cchHHHhhHHhcCceecCCHHHHHHHH
Confidence 357999999999999999999999999999999999999999999665554 999999999999999999999999999
Q ss_pred HHHHhhCCeecccccCCCCCCCceecccccCChhhhhcCCcchhhhhhhhhhccchhhccCCCcccccccccchhhcccc
Q psy4010 1185 RLFSVMNMHPVGYYDLSTAGVPVHSTAFRSIDAYALNQSPFRVFTSLLRLELIEDKVEQSDSPHEAKHTARFGEVEQRGI 1264 (1527)
Q Consensus 1185 r~favmgM~pVgyYDl~~agvPvhsTaFRp~~~~~L~~npFrvftslLr~eli~~~~~~~~~~h~g~HtARFGeieqRg~ 1264 (1527)
|+||||||+||||||||.||||||||||-|+. +- .++.+-|.|.||||||||||||+
T Consensus 80 r~fa~mgm~pv~yydl~~agvpvhstafe~~s--------------f~---------~~~~~~h~g~~TArfgeieqRg~ 136 (295)
T COG5383 80 RLFAVMGMYPVGYYDLSTAGVPVHSTAFEPVS--------------FA---------DEDGERHPGVHTARFGEIEQRGV 136 (295)
T ss_pred HHHHHhcCCcccceeccccCCcceechhhhhh--------------hh---------ccCCccccccchhhHhHHHHhhh
Confidence 99999999999999999999999999992221 11 12368899999999999999999
Q ss_pred ccChhhHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHhcccccCCCChHHHHhcccEeEEEEeCCCCCCCCCCCCCcCCc
Q psy4010 1265 ALTAKGRQLYDYLLDKTRGSFKGIPDETNSKLYMENLASNFSVFPDDLNTLRKEKLAYFNYYVTDKEPYFGGPKPISLGG 1344 (1527)
Q Consensus 1265 AlT~kGr~lYd~ll~~~~~~~~~~~~~~~~~~~~~~l~~~F~~fPD~~~~lr~~~Layf~y~~~~~~~~~~~~~~~~~~~ 1344 (1527)
|||||||.|||.||++ ...+.++-+|...+.++|++|||+|.+||+||||||+|.++..+..
T Consensus 137 ALt~kgr~lYd~Llq~-------~~t~~~~~~~s~~a~e~F~qFpd~~~emrqQ~lA~f~y~l~~~~~~----------- 198 (295)
T COG5383 137 ALTPKGRVLYDDLLQA-------ASTGFNAMAYSATAREIFEQFPDSMSEMREQGLAQFRYLLELVAAA----------- 198 (295)
T ss_pred hhcccccchHHHHHhh-------hccccchhhhHHHHhhHHhhCCchHHHHHHHhHHHHHHHhhhcchh-----------
Confidence 9999999999999988 3467788999999999999999999999999999999996543221
Q ss_pred ccccccccCCCCCCccccCCCCCCCCCchhhhhcccccccCCCCCCcccceeeeccccccccccccccccccccchhhcc
Q psy4010 1345 FIFVPLLCGDSSSPVYHCLDSCPPPQWNPALLRRSHKVCAGKNSRPRSIRLCVIDRGLKLFPAHTFRRRLSNGLSESALD 1424 (1527)
Q Consensus 1345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1424 (1527)
|. ..|.
T Consensus 199 -----------------------------------~r------------------------------q~le--------- 204 (295)
T COG5383 199 -----------------------------------HR------------------------------QSLE--------- 204 (295)
T ss_pred -----------------------------------HH------------------------------hhcC---------
Confidence 00 0001
Q ss_pred ccccccccCccccccCCCCCCHHHHHHcCceeEeccccccccccccccccccCCCCccccccccccCHHHHHHHhCCcCC
Q psy4010 1425 LYQTDHISGKSHLDKNVNDFNLDNYVRAGLIGYEGITYEDFLPVSAAGIFQSNLSTNANHHIESQSSRHDFENALGCSVR 1504 (1527)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~~~~~l~~li~~g~~~~~pi~YEDFLPvSAagIFqSnLg~~~~~~~~~~~~~~~fe~~lg~~v~ 1504 (1527)
+ ..++..||+.|+++++||+||||||||||||||||||+..+....+++|+..||++||+.|+
T Consensus 205 --------~---------~dd~Q~LiE~g~v~fepivyEDFlpvSAAgIfqSNLg~e~~~~~~~~~np~~f~~~Lg~~Vl 267 (295)
T COG5383 205 --------E---------GDDPQGLIERGAVQFEPIVYEDFLPVSAAGIFQSNLGNEGQQEFDGGPNPDRFEDALGAAVL 267 (295)
T ss_pred --------c---------ccCchhHHHhccccccchhHhhcchhhhhhhhhhhccccccceeccCCCHHHHHhhcCCCcC
Confidence 0 12466799999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhccc
Q psy4010 1505 DEMKLYEDLEKKSLQDCTF 1523 (1527)
Q Consensus 1505 de~~lY~~~q~~Sl~~~~~ 1523 (1527)
||+.+|+.++++|++.|.+
T Consensus 268 De~~lY~~ieq~Sie~c~l 286 (295)
T COG5383 268 DEFQLYAAIEQRSIERCIL 286 (295)
T ss_pred CHHHHHHHHHHhhhhhhhh
Confidence 9999999999999999955
No 4
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=100.00 E-value=2.4e-83 Score=726.47 Aligned_cols=315 Identities=40% Similarity=0.684 Sum_probs=262.9
Q ss_pred eccCCceeeEeccchhhhhhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccccCcccCC
Q psy4010 108 IDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIVSYDTYQTLLDTHSLVADIVCFKTPHINHL 187 (1527)
Q Consensus 108 V~K~G~cNV~~~nv~~~~~ryl~DiFTTLVDlrWRw~LliF~~sFl~SWlvFa~iyw~La~~H~llaDIv~f~~~hiNHl 187 (1527)
|.|||+|||++.|+++++.+|++|+||||||++|||++++|+++|+++|++||.+||+|+..|+++.- . |.
T Consensus 1 v~K~G~~Nv~~~~~~~~~~~~~~D~~~tlv~~~W~~~l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~---~------~~ 71 (336)
T PF01007_consen 1 VSKDGRCNVRRSNVPQKWFRYLRDLYTTLVDMSWRWFLLLFVLSYLLSWLFFALLYYLIAYSHGDLEP---I------HA 71 (336)
T ss_dssp B-TTS-BSEEEESSTSCCHCCCHTHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCT---T------TS
T ss_pred CCCCceeEEEEcCCChhhhhHHHHHHhhccCCCeeeeeehhHHHHHHHHHHHHHHHHHHhhhcccchh---c------cc
Confidence 68999999999999988999999999999999999999999999999999999999999999985421 0 00
Q ss_pred CCCCcchhhHHHHHhhhcccCCcccccccccCCCCCCcceeeeeccccccccccccCCCCccceeeeeeeeEEEeeeeee
Q psy4010 188 TPSTLDIDRVQDRMVAQMSRHGSCVPKAVIEGPPRREVPILLRQTSFKALTEDIAVPGRDVGSISIFNGQFFLRGLTEGT 267 (1527)
Q Consensus 188 tPrtLDId~~q~~m~~~~~~~g~cv~k~~ieGPp~~~~PillrqtSF~Al~e~i~f~~~~~g~~s~f~gaFlfs~eTqtT 267 (1527)
..++.+|+.+ +.+| +++|+||+|||||
T Consensus 72 -----------------~~~~~~Cv~~----------------~~~f--------------------~~aF~FSveT~tT 98 (336)
T PF01007_consen 72 -----------------DSNWTPCVSN----------------VNSF--------------------TSAFLFSVETQTT 98 (336)
T ss_dssp -----------------BTTS-TSECT-----------------TTH--------------------HHHHHHHHHHHTT
T ss_pred -----------------ccCCCCceec----------------ccch--------------------hhheeEEEEEEEE
Confidence 0134556543 4454 5689999988877
Q ss_pred eeeeeccccccccccccccccccccceeeeeccccchhhhh-hhhhhhhhHHHHHHHHHHHHHhhhcCCCCCCCeeeecc
Q psy4010 268 VTAKVLSSRNRREKEDRIGSDEIPVCGVQYVGDYCTLCHRH-GKQANLNDLSRLQAFMTGLVFAKVARPKQRTQTLLFSR 346 (1527)
Q Consensus 268 ig~~~~~~~~~~Etq~tigteecp~yG~r~vt~~C~~~i~l-~~Q~ilg~~~lIdAfmtGLVFAKfSRPkkRa~TI~FSk 346 (1527)
|| ||.++++++||.++++ .+|+++| ++++||++|++|||||||++|++||+|||
T Consensus 99 IG-----------------------YG~~~~~~~c~~a~~l~~~q~~~g--~l~~a~~~Glvfar~srP~~R~~tI~FS~ 153 (336)
T PF01007_consen 99 IG-----------------------YGSRYPTPECPYAIFLVTIQSLVG--LLLDAFMTGLVFARFSRPKKRASTILFSK 153 (336)
T ss_dssp --------------------------SSSEB-CSHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTSCCCGGGSEEE-S
T ss_pred ec-----------------------cCCcccCCCcchhHHHHHHHHHHH--HHHHHHHHHHHHHHhcCcccccceEEEEe
Confidence 76 7889999999999984 6999998 99999999999999999999999999999
Q ss_pred ceEEeecCCeEEEEEEEeeCCCCceeeecEEEEEEEEeeecCCCcccccchhhHHHHHhhhhcccccccccccccccCCc
Q psy4010 347 TAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTP 426 (1527)
Q Consensus 347 ~AVIs~rDGklcLMFRVgNlR~ks~LIea~VRa~Lir~~~T~EGE~i~~~~~eLkL~ld~~~q~~e~~~~ts~~vR~gtp 426 (1527)
+|||+++||++||||||||+| +++|+||+||++|++.++|+|||.++..+++|++.
T Consensus 154 ~AVI~~~dG~~~LmfRv~n~R-~~~liea~Vr~~l~~~~~t~eGe~~~~~~~~L~l~----------------------- 209 (336)
T PF01007_consen 154 KAVIAPRDGKLCLMFRVANLR-KNQLIEAHVRLYLIRDRVTKEGERIRLRQQDLPLE----------------------- 209 (336)
T ss_dssp SEEEEEETTEEEEEEEEEESS-SSSEEEEEEEEEEEEEEE-TTS-EEEEEEEEEGSS-----------------------
T ss_pred eeEEeecCCeeEEEEEecCCC-cCeeecceEEEEEEEeeecCCCceEEeeccccccc-----------------------
Confidence 999999999999999999999 68999999999999999999999886444444432
Q ss_pred ccccccccCCceeeecceEEEEecCCCCcCcccCHhhhccCCEEEEEEEEEeeccccceEEEeeecCCCccccCCeeccc
Q psy4010 427 YQLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPL 506 (1527)
Q Consensus 427 ~~L~ld~~~~~lfLiwPlTVvH~IDe~SPLY~~T~edL~~~dfEIVViLEG~DESTGqTvQARTSYlp~EILWGhRF~pi 506 (1527)
.+.+++.++|.||+||+|+|||+||||++++++|.++++||||+|+|+||+|||++|||+||+++||+|||||+||
T Consensus 210 ----~~~~~~~~~L~~p~tV~H~IDe~SPLy~~t~~~L~~~~~EivV~l~G~de~t~~~v~aR~SY~~~eI~wg~rF~~~ 285 (336)
T PF01007_consen 210 ----RDQGEDRPFLILPWTVVHVIDEDSPLYGLTPEDLAQADFEIVVTLEGIDESTGQTVQARTSYLPEEILWGHRFVPM 285 (336)
T ss_dssp ----TTTTTTBEEESSEEEEEEE-STTSTTTT--HHHHHCTTEEEEEEEEEEETTTTEEEEEEEEEEGGGEEETEEE--S
T ss_pred ----cCCCCCceeeeCCEEEEEeCCCCCcchhhccchhccCcEEEEEEEEEEEeecceEEEEEEEEchHHeecCCEeeee
Confidence 2334567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcccccccccccchhhhhhchhhhhhhcc
Q psy4010 507 VRKDKPCDKPHFKSYDDLINEALLESNIQHAKSK 540 (1527)
Q Consensus 507 V~~dkg~y~IDfskFd~viP~~l~~~~~~~A~~~ 540 (1527)
++.++|.+.|||++||++.|.+ .|.|+|++-
T Consensus 286 v~~~~g~~~VD~s~F~~t~pv~---~p~~Sa~~~ 316 (336)
T PF01007_consen 286 VSREDGRYRVDFSKFHDTVPVD---TPSCSAKEL 316 (336)
T ss_dssp EEEETTEEEEEGCGTT-EEE-T---S-SS-HHHH
T ss_pred EEecCCeEEEEhHHhCCceEcc---CCCcCHHHH
Confidence 9998899999999999999998 899999943
No 5
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=100.00 E-value=2.1e-82 Score=718.76 Aligned_cols=309 Identities=50% Similarity=0.867 Sum_probs=274.1
Q ss_pred eccCCceeEEEcCcccccccccccccceeeecchhHHhhh-hhcccccccccccccccCCcccccchhhhhhhhhhhccc
Q psy4010 646 IDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLL-ALSYPVLKSTCPAQFKLLSPEHNWARFSRFRLHLVAASV 724 (1527)
Q Consensus 646 i~k~G~~ni~~~~~~~~~~~~~~Dif~tlv~~~Wr~~~l~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1527)
|+|||++||.+.+++.++.+|++|+||||||++|||++++ +++|
T Consensus 1 v~K~G~~Nv~~~~~~~~~~~~~~D~~~tlv~~~W~~~l~~f~~~y----------------------------------- 45 (336)
T PF01007_consen 1 VSKDGRCNVRRSNVPQKWFRYLRDLYTTLVDMSWRWFLLLFVLSY----------------------------------- 45 (336)
T ss_dssp B-TTS-BSEEEESSTSCCHCCCHTHHHHHHHS-HHHHHHHHHHHH-----------------------------------
T ss_pred CCCCceeEEEEcCCChhhhhHHHHHHhhccCCCeeeeeehhHHHH-----------------------------------
Confidence 6899999999999998899999999999999999999999 8999
Q ss_pred cccccccCCCcccccccccCCCCCCCCCCcccceEeechhhhhcccCceeeehhhHHHHhhhcCCccccCCCCCCCcccc
Q psy4010 725 HTSNQVAKHPNVHISRALGCSSPMSLRPGKIENRYGSFSEQLALSYPVLKSFACIWWLLAYTHGDVLSENQNNPQFVPCV 804 (1527)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~l~~~villFAlIYylIa~~hGDl~~~~~~~~~~~pCv 804 (1527)
+++| ++||++||++++.|||+...+ .+++++||+
T Consensus 46 ----------------------------------~~~~-----------~~Fa~~y~~i~~~~gdl~~~~-~~~~~~~Cv 79 (336)
T PF01007_consen 46 ----------------------------------LLSW-----------LFFALLYYLIAYSHGDLEPIH-ADSNWTPCV 79 (336)
T ss_dssp ----------------------------------HHHH-----------HHHHHHHHHHHHHHTSCCTTT-SBTTS-TSE
T ss_pred ----------------------------------HHHH-----------HHHHHHHHHHhhhcccchhcc-cccCCCCce
Confidence 8999 999999999999999987422 345789999
Q ss_pred ccccchhhHHHhheeeeeeeccCCCccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccceeeeccceEEee
Q psy4010 805 IGVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQ 884 (1527)
Q Consensus 805 ~~v~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~lLv~lQalvGlLl~A~ltGlVFAKfSRPkkRA~TIlFSk~AVIs~ 884 (1527)
.++.+|++||+||+|||||||||.++|+++||+|++++++|+++|++++|+++|++|||||||++|++||+|||+|||++
T Consensus 80 ~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~R~~tI~FS~~AVI~~ 159 (336)
T PF01007_consen 80 SNVNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKKRASTILFSKKAVIAP 159 (336)
T ss_dssp CT-TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCGGGSEEE-SSEEEEE
T ss_pred ecccchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccceEEEEeeeEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEEEeeCCCCceeEeeEEEEEEEEeEecCCCceecceeeeeeeeecccCCceeeecceEEEEecCCCCCCccc
Q psy4010 885 RDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDM 964 (1527)
Q Consensus 885 rDG~~cLMFRVaNlR~ks~LIea~Vrv~Lir~~~T~EGE~~r~~q~~L~L~rd~~~~~~fL~lPwTVvHvIDE~SPLY~l 964 (1527)
+||++||||||||+| +++|+|++||++|++.+.|+|||.++..+++|+|+++.+++.++|.+||||+|+|||+||||++
T Consensus 160 ~dG~~~LmfRv~n~R-~~~liea~Vr~~l~~~~~t~eGe~~~~~~~~L~l~~~~~~~~~~L~~p~tV~H~IDe~SPLy~~ 238 (336)
T PF01007_consen 160 RDGKLCLMFRVANLR-KNQLIEAHVRLYLIRDRVTKEGERIRLRQQDLPLERDQGEDRPFLILPWTVVHVIDEDSPLYGL 238 (336)
T ss_dssp ETTEEEEEEEEEESS-SSSEEEEEEEEEEEEEEE-TTS-EEEEEEEEEGSSTTTTTTBEEESSEEEEEEE-STTSTTTT-
T ss_pred cCCeeEEEEEecCCC-cCeeecceEEEEEEEeeecCCCceEEeeccccccccCCCCCceeeeCCEEEEEeCCCCCcchhh
Confidence 999999999999999 9999999999999999999999999878899999999877899999999999999999999999
Q ss_pred CHhhhccCCEEEEEEEEeeeccccceEEEeecccCCccccCCccccceecccc--ceeeeeeecccccCcccccc
Q psy4010 965 AAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVRSVSK--QLVTSSIHMFVPNGLSKECK 1037 (1527)
Q Consensus 965 T~edL~~~dfEIVV~LeG~DEsTgqtVqARtSY~~~EIlWGhRF~pmI~~d~k--~iD~~~Fh~v~P~~l~~~c~ 1037 (1527)
++++|.++++||+|+++|+||+|||++|||+||.++||+|||||+||++.+++ .+|+++||+++|.... .|+
T Consensus 239 t~~~L~~~~~EivV~l~G~de~t~~~v~aR~SY~~~eI~wg~rF~~~v~~~~g~~~VD~s~F~~t~pv~~p-~~S 312 (336)
T PF01007_consen 239 TPEDLAQADFEIVVTLEGIDESTGQTVQARTSYLPEEILWGHRFVPMVSREDGRYRVDFSKFHDTVPVDTP-SCS 312 (336)
T ss_dssp -HHHHHCTTEEEEEEEEEEETTTTEEEEEEEEEEGGGEEETEEE--SEEEETTEEEEEGCGTT-EEE-TS--SS-
T ss_pred ccchhccCcEEEEEEEEEEEeecceEEEEEEEEchHHeecCCEeeeeEEecCCeEEEEhHHhCCceEccCC-CcC
Confidence 99999999999999999999999999999999999999999999999988443 4999999999998743 254
No 6
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=99.96 E-value=2.7e-31 Score=298.66 Aligned_cols=104 Identities=40% Similarity=0.646 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhhhhhcCChhhHHHHHHHhcHHHHhcCCcccccccccccccccccccccc--cCCHHHHHHHHHHHHhhC
Q psy4010 1114 RKLFSQSMSEMYKKQVPQYSTLLELVRQVNLDTLANSGKLDEMSAEDLERLNEERHGAIR--LGTPEELYNIRRLFSVMN 1191 (1527)
Q Consensus 1114 R~~f~~ams~mY~~EVP~Y~~L~~lv~~vn~~~l~~~~~~~~~~~~~~~rl~~ERHGAIR--~Gt~~El~~~~r~favmg 1191 (1527)
|++|..+|++||++|||+|++++++|+++|..++. |||||| .|+|.||+.++|+|+.||
T Consensus 1 r~~~~~~L~~~Y~~~vP~~~~~~~lv~~~~~~v~~-------------------dH~A~RT~~~~~~gl~~lar~F~~lG 61 (302)
T PF07063_consen 1 RQAFFDALWEMYLQRVPSAGTLVELVAEVGETVLN-------------------DHGAFRTFGGPPYGLASLARIFAALG 61 (302)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCHCHE-------------------EEEEEEEECTSHCCHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHCcCHHHHHHHHHHcCcccee-------------------eeeEEEecCCCchhHHHHHHHHHHcC
Confidence 78999999999999999999999999999987764 999999 999999999999999999
Q ss_pred CeecccccCCCCCCCceecccccCChhhhhcCCcchhhhhhhhhhccchh
Q psy4010 1192 MHPVGYYDLSTAGVPVHSTAFRSIDAYALNQSPFRVFTSLLRLELIEDKV 1241 (1527)
Q Consensus 1192 M~pVgyYDl~~agvPvhsTaFRp~~~~~L~~npFrvftslLr~eli~~~~ 1241 (1527)
|+|||||||..++ ||||+|||.|.++|. ||||+|.||+|+++++.
T Consensus 62 y~~~G~Y~f~~kk--l~a~~f~p~d~~~~~---prvFiSeL~~e~ls~~~ 106 (302)
T PF07063_consen 62 YEPVGYYDFPAKK--LHATWFRPPDPPELA---PRVFISELRVEELSPEL 106 (302)
T ss_dssp EEEEEEEEEGGGT--EEEEEEEETSCTCCC----EEEEEEE-GGGSSHHH
T ss_pred CEEcceecccccC--ceEEEecCCCCcccC---CeEEeecccHhhcCHHH
Confidence 9999999999999 999999999999999 99999999999998554
No 7
>COG5383 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.39 E-value=2.7e-14 Score=157.33 Aligned_cols=133 Identities=20% Similarity=0.117 Sum_probs=122.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhhhhhcCChhhHHHHHHHhcHHHHh--cCCc-cccc--ccccccccccccccccccCC
Q psy4010 1102 RSGGDVMSPNAIRKLFSQSMSEMYKKQVPQYSTLLELVRQVNLDTLA--NSGK-LDEM--SAEDLERLNEERHGAIRLGT 1176 (1527)
Q Consensus 1102 ~~~~~~~~~~~~R~~f~~ams~mY~~EVP~Y~~L~~lv~~vn~~~l~--~~~~-~~~~--~~~~~~rl~~ERHGAIR~Gt 1176 (1527)
+...+....++++..|..+|+.||++++|+|+.++++|..+|.+.|. .+|+ +... ...++.++..+||++++.++
T Consensus 158 ~~~~~s~~a~e~F~qFpd~~~emrqQ~lA~f~y~l~~~~~~~rq~le~~dd~Q~LiE~g~v~fepivyEDFlpvSAAgIf 237 (295)
T COG5383 158 NAMAYSATAREIFEQFPDSMSEMREQGLAQFRYLLELVAAAHRQSLEEGDDPQGLIERGAVQFEPIVYEDFLPVSAAGIF 237 (295)
T ss_pred chhhhHHHHhhHHhhCCchHHHHHHHhHHHHHHHhhhcchhHHhhcCcccCchhHHHhccccccchhHhhcchhhhhhhh
Confidence 44466778899999999999999999999999999999999999999 5554 3332 56788999999999999999
Q ss_pred HHHHHHHHHHHHhhCCeecccccCCCCCCCceecccccCChhhhhcCCcchhhhhhhh
Q psy4010 1177 PEELYNIRRLFSVMNMHPVGYYDLSTAGVPVHSTAFRSIDAYALNQSPFRVFTSLLRL 1234 (1527)
Q Consensus 1177 ~~El~~~~r~favmgM~pVgyYDl~~agvPvhsTaFRp~~~~~L~~npFrvftslLr~ 1234 (1527)
.++|.+.+|.++.+||+|+-|||..-++||.|.+.|+|+++.++++|||++|++|||.
T Consensus 238 qSNLg~e~~~~~~~~~np~~f~~~Lg~~VlDe~~lY~~ieq~Sie~c~l~l~~allr~ 295 (295)
T COG5383 238 QSNLGNEGQQEFDGGPNPDRFEDALGAAVLDEFQLYAAIEQRSIERCILALKPALLRE 295 (295)
T ss_pred hhhccccccceeccCCCHHHHHhhcCCCcCCHHHHHHHHHHhhhhhhhhhhhhhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999984
No 8
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=98.89 E-value=4.3e-10 Score=128.35 Aligned_cols=94 Identities=40% Similarity=0.431 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhcccccchhccccCcccCCCCCC------cchhhHHHHHhhhcccCCccccc---ccccCCCCCCcceee
Q psy4010 159 SYDTYQTLLDTHSLVADIVCFKTPHINHLTPST------LDIDRVQDRMVAQMSRHGSCVPK---AVIEGPPRREVPILL 229 (1527)
Q Consensus 159 Fa~iyw~La~~H~llaDIv~f~~~hiNHltPrt------LDId~~q~~m~~~~~~~g~cv~k---~~ieGPp~~~~Pill 229 (1527)
....|..|+.+|+..|||++ .+.|+||+||++ +||+.+++.|.+ +| ..+| ..|||||. ++|
T Consensus 161 s~~~Y~~L~~eSe~aAWi~~-~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~----~G-~~~n~~g~~Iegsp~----~lL 230 (302)
T PF07063_consen 161 SLADYQTLLAESEYAAWIAA-HGYHINHFTPRVNRLKKFLDIDAVNAFLKE----RG-IPMNDSGGEIEGSPD----GLL 230 (302)
T ss_dssp BHHHHHHHHHH-HHHHHHHH-HTCS-SEEEEETTT-TT-S-HHHHHHHHHH----TT---B--TTSSSEECCC----CSE
T ss_pred CHHHHHHHHHHhHHHHhhcc-cccccceeeceeecccccccHHHHHHHHHH----cC-CCccccCCceEECCC----CCE
Confidence 67889999999999999999 899999999999 999999999985 45 3467 89999998 999
Q ss_pred eeccccccccccccCCCC----ccceeeeeeeeEEEe
Q psy4010 230 RQTSFKALTEDIAVPGRD----VGSISIFNGQFFLRG 262 (1527)
Q Consensus 230 rqtSF~Al~e~i~f~~~~----~g~~s~f~gaFlfs~ 262 (1527)
|||||+|..+++.|.+++ .+.|.+.+++|..|.
T Consensus 231 rQtS~~A~~~~v~F~d~~g~~~~~~ip~~f~Ef~~R~ 267 (302)
T PF07063_consen 231 RQTSTMADEEEVTFADGDGSLVEGSIPGSFYEFAQRY 267 (302)
T ss_dssp EEEEBEEEEEEEEETTETS-ECEEEEEEEEEEEEEE-
T ss_pred EEEeeccceeEEEEecCCCceeeeEeeeeEEeehhhc
Confidence 999999999999998773 478889899998884
No 9
>KOG3713|consensus
Probab=98.38 E-value=1.7e-07 Score=111.61 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=57.8
Q ss_pred cccchhhHHHhheeeeeeeccCCCccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Q psy4010 806 GVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQR 870 (1527)
Q Consensus 806 ~v~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~lLv~lQalvGlLl~A~ltGlVFAKfSRPkkR 870 (1527)
...|...+||+++.|||||||||++|.+ ..|.+++++.++.|+|+.|+.+.++|-+|++-..+
T Consensus 374 ~FtSIPa~~WWaiVTMTTVGYGDm~P~T--~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~ 436 (477)
T KOG3713|consen 374 KFTSIPAGFWWAVVTMTTVGYGDMVPVT--VLGKLVASLCILCGVLVLALPITIIVNNFSMYYSE 436 (477)
T ss_pred CCccccchhheeeEEEeeecccCccccc--cchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHH
Confidence 3788999999999999999999999988 57999999999999999999999999999875543
No 10
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.31 E-value=6.7e-07 Score=82.76 Aligned_cols=58 Identities=24% Similarity=0.407 Sum_probs=49.7
Q ss_pred ccchhhHHHhheeeeeeeccCCCccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy4010 807 VNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVAR 866 (1527)
Q Consensus 807 v~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~lLv~lQalvGlLl~A~ltGlVFAKfSR 866 (1527)
..++.+|+|||+.|+|||||||..|.+ +.+++++.+++++|+.+.++.++.+...+.+
T Consensus 22 ~~~~~da~yfs~~t~tTvGyGDi~p~t--~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~~ 79 (79)
T PF07885_consen 22 KWSFIDALYFSFVTITTVGYGDIVPQT--PAGRIFTIIYMLIGIFLFALFLSVLASVLTQ 79 (79)
T ss_dssp TTSHHHHHHHHHHHHTT---SSSSTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cCCHHHHHHHHHHHHhcccCCCccCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 478999999999999999999999986 6789999999999999999999998877653
No 11
>KOG1545|consensus
Probab=97.73 E-value=3.3e-06 Score=97.53 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=57.2
Q ss_pred ccccchhhHHHhheeeeeeeccCCCccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Q psy4010 805 IGVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQR 870 (1527)
Q Consensus 805 ~~v~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~lLv~lQalvGlLl~A~ltGlVFAKfSRPkkR 870 (1527)
.+..+..+||||+|.||||||||+++|.+ +.|.++-.+.++.|+|..|+.+-++.+.|.-=-.|
T Consensus 389 S~F~SIPdaFWwavVTMTTVGYGDm~P~T--vgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhr 452 (507)
T KOG1545|consen 389 SHFSSIPDAFWWAVVTMTTVGYGDMVPVT--VGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 452 (507)
T ss_pred cCCCcCcccceEEEEEEEeeccccceecc--cCceehhhHHhhhhheEecccccEEEecccceeec
Confidence 46789999999999999999999999988 78999999999999999999998888887655444
No 12
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=97.60 E-value=3.3e-05 Score=98.70 Aligned_cols=91 Identities=16% Similarity=0.346 Sum_probs=65.4
Q ss_pred ceeeehhhHHHHhhhcCCccccCCCCCCCccc-ccc------ccchhhHHHhheeeeeeeccCCCccCCCCchhHHHHHH
Q psy4010 772 VLKSFACIWWLLAYTHGDVLSENQNNPQFVPC-VIG------VNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCV 844 (1527)
Q Consensus 772 villFAlIYylIa~~hGDl~~~~~~~~~~~pC-v~~------v~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~lLv~l 844 (1527)
++-++|++||+++....+ .+.+|... ..+ ...++.|||||+.|+||||||+++|.+ +...+++++
T Consensus 212 ~~H~~aC~~y~i~~~~~~------~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t--~~E~i~~i~ 283 (823)
T PLN03192 212 LVHCAGCLYYLIADRYPH------QGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVN--TIEMIFIIF 283 (823)
T ss_pred HHHHHHHHHHHHHhhcCC------CCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCc--cchHHHHHH
Confidence 446789999999743211 01123221 011 124677999999999999999999877 568899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCcccc
Q psy4010 845 QSIVGTIIQAFMTGLVFAKVARPKQR 870 (1527)
Q Consensus 845 QalvGlLl~A~ltGlVFAKfSRPkkR 870 (1527)
=+++|+++.|+++|-+..=+..-.+|
T Consensus 284 ~ml~g~~~~a~~ig~i~~li~~~~~~ 309 (823)
T PLN03192 284 YMLFNLGLTAYLIGNMTNLVVEGTRR 309 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987766554443
No 13
>KOG1419|consensus
Probab=97.58 E-value=4.2e-05 Score=92.49 Aligned_cols=87 Identities=23% Similarity=0.312 Sum_probs=64.6
Q ss_pred hhhhcccC--ceeeehhhHHHHhhhcCCccccCCCCCCCccccccccchhhHHHhheeeeeeeccCCCccCCCCchhHHH
Q psy4010 764 EQLALSYP--VLKSFACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWL 841 (1527)
Q Consensus 764 e~l~l~~~--villFAlIYylIa~~hGDl~~~~~~~~~~~pCv~~v~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~lL 841 (1527)
|.++.-|+ +.+||+....-++ .-|.. +.+.| ....++.+|+||.+.|+||||||+.+|.+ +.|.++
T Consensus 232 ELiTt~YIGFL~LIfsSflVYLa--EKd~~---~e~~n-----~~F~TyADALWWG~ITltTIGYGDk~P~T--WlGr~l 299 (654)
T KOG1419|consen 232 ELITTWYIGFLVLIFSSFLVYLA--EKDAQ---GEGTN-----DEFPTYADALWWGVITLTTIGYGDKTPQT--WLGRLL 299 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hcccc---ccccc-----ccchhHHHHHHhhheeEEeeccCCcCccc--chhHHH
Confidence 66666664 3466665444333 22311 11111 35689999999999999999999999988 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4010 842 MCVQSIVGTIIQAFMTGLVFA 862 (1527)
Q Consensus 842 v~lQalvGlLl~A~ltGlVFA 862 (1527)
+++-+++|+-++|+..|++=.
T Consensus 300 aa~fsligiSFFALPAGILGS 320 (654)
T KOG1419|consen 300 AACFSLIGISFFALPAGILGS 320 (654)
T ss_pred HHHHHHHHHHHHhcccccccc
Confidence 999999999999999988743
No 14
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.54 E-value=9.5e-05 Score=87.97 Aligned_cols=54 Identities=26% Similarity=0.399 Sum_probs=46.0
Q ss_pred cccchhhHHHhheeeeeeeccCCCccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4010 806 GVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVF 861 (1527)
Q Consensus 806 ~v~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~lLv~lQalvGlLl~A~ltGlVF 861 (1527)
...++.+||||++.|+||+|||+..|.+ +.+.+++++-++.|+.+.+..++.+.
T Consensus 165 ~~~s~~dA~y~svvt~tTvGyGdi~p~t--~~grl~~i~~ii~Gi~vf~~~is~i~ 218 (393)
T PRK10537 165 PIESLSTAFYFSIVTMSTVGYGDIVPVS--ESARLFTISVIILGITVFATSISAIF 218 (393)
T ss_pred CCCCHHHHHHhhheeeecccCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3479999999999999999999999877 57889999889999998877665443
No 15
>KOG4390|consensus
Probab=97.28 E-value=1.5e-05 Score=92.61 Aligned_cols=63 Identities=19% Similarity=0.327 Sum_probs=56.8
Q ss_pred ccccchhhHHHhheeeeeeeccCCCccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Q psy4010 805 IGVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQ 869 (1527)
Q Consensus 805 ~~v~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~lLv~lQalvGlLl~A~ltGlVFAKfSRPkk 869 (1527)
+...+...||||.+.||||+|||++.|.+. .|.++..+.++.|+|+.|+.+-++...|||--.
T Consensus 352 t~FTsIPaaFWYTIVTmTTLGYGDMVp~TI--aGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYH 414 (632)
T KOG4390|consen 352 TKFTSIPAAFWYTIVTMTTLGYGDMVPSTI--AGKIFGSICSLSGVLVIALPVPVIVSNFSRIYH 414 (632)
T ss_pred cccccCcHhHhhheeeeeeccccccchHHH--HHHHhhhhhcccceEEEeccccEEEechhHHHh
Confidence 456788999999999999999999999884 689999999999999999999999999988643
No 16
>KOG0498|consensus
Probab=96.64 E-value=0.0023 Score=81.22 Aligned_cols=91 Identities=19% Similarity=0.356 Sum_probs=66.9
Q ss_pred eehhhHHHHhhhcCCccccCCCCCCCcc-------cccc---------ccchhhHHHhheeeeeeeccCCCccCCCCchh
Q psy4010 775 SFACIWWLLAYTHGDVLSENQNNPQFVP-------CVIG---------VNSFASSLLFSIETQHTIGYGSRSTTTECPEA 838 (1527)
Q Consensus 775 lFAlIYylIa~~hGDl~~~~~~~~~~~p-------Cv~~---------v~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a 838 (1527)
.+|.+||++|...-+--.. ..+|.. |-.. ...|..|+||+++|+||+|||..++++ +.=
T Consensus 247 ~~gc~wYlia~~~~~~~~~---~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~~s~~--~~E 321 (727)
T KOG0498|consen 247 WAGCIWYLIAIERPASCPR---KATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLVHANN--MGE 321 (727)
T ss_pred HHHHHHHHHHhcccccCcc---ccccccccccccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCccCCCC--cHH
Confidence 4799999999765321100 003333 3221 125788999999999999999999877 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Q psy4010 839 IWLMCVQSIVGTIIQAFMTGLVFAKVARPKQR 870 (1527)
Q Consensus 839 ~lLv~lQalvGlLl~A~ltGlVFAKfSRPkkR 870 (1527)
+++.++=|++|+++.|.++|-+=+=+.+-..|
T Consensus 322 ~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR 353 (727)
T KOG0498|consen 322 KIFSIFIMLFGLLLFAYLIGNMTALLQSLTSR 353 (727)
T ss_pred HHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHH
Confidence 67788889999999999999998877777665
No 17
>KOG1418|consensus
Probab=96.38 E-value=0.0034 Score=71.96 Aligned_cols=49 Identities=33% Similarity=0.490 Sum_probs=42.3
Q ss_pred ccchhhHHHhheeeeeeeccCCCccCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy4010 807 VNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMT 857 (1527)
Q Consensus 807 v~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~lLv~lQalvGlLl~A~lt 857 (1527)
.-+|++|+|||+.+.||||||+++|.+. .|.+++++=+++|+=+..++.
T Consensus 113 ~W~f~~al~fs~tv~TTIGYG~i~P~T~--~Gr~~~i~YaliGIPl~li~l 161 (433)
T KOG1418|consen 113 QWSFSSALLFSITVITTIGYGNIAPRTD--AGRLFTILYALVGIPLMLLIL 161 (433)
T ss_pred ceecchhHhhhhheeeeccCCcccCCcC--cchhHHHHHHHHhhHHHHHHH
Confidence 4599999999999999999999999874 589999999999986665554
No 18
>KOG3684|consensus
Probab=95.12 E-value=0.01 Score=71.51 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=50.6
Q ss_pred ccchhhHHHhheeeeeeeccCCCccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4010 807 VNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKV 864 (1527)
Q Consensus 807 v~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~lLv~lQalvGlLl~A~ltGlVFAKf 864 (1527)
-.+++++.|+-.-|+-+||||++.|.+.| |..+..+-.++|....|+++.+|--|+
T Consensus 285 ~~~~~nsmWli~iTFlsiGYGDiVP~Tyc--Gr~v~l~tGivGa~~sallvAvisRKL 340 (489)
T KOG3684|consen 285 TINYLNSMWLIAITFLSIGYGDIVPNTYC--GRGVALLTGIVGAGCSSLLVAVIARKL 340 (489)
T ss_pred HHHHHhhHHHHHHHHhhcccCcccCCccc--cchHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 35799999999999999999999999999 889999999999999999988887665
No 19
>KOG4404|consensus
Probab=93.90 E-value=0.038 Score=64.65 Aligned_cols=41 Identities=27% Similarity=0.455 Sum_probs=35.6
Q ss_pred cchhhHHHhheeeeeeeccCCCccCCCCchhHHHHHHHHHHHH
Q psy4010 808 NSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGT 850 (1527)
Q Consensus 808 ~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~lLv~lQalvGl 850 (1527)
-.|..||||+....||||||..+|.++ .|++..++=+++|+
T Consensus 79 WkF~GaFYFa~TVItTIGyGhstP~T~--~GK~Fcm~Yal~Gi 119 (350)
T KOG4404|consen 79 WKFAGAFYFATTVITTIGYGHSTPSTD--GGKAFCMFYALVGI 119 (350)
T ss_pred cccCcceEEEEEEEeeeccCCCCCCCc--CceehhhhHHHhcC
Confidence 479999999999999999999999886 47888777777774
No 20
>KOG0500|consensus
Probab=93.64 E-value=0.046 Score=66.68 Aligned_cols=86 Identities=28% Similarity=0.436 Sum_probs=62.4
Q ss_pred ehhhHHHHhhhcCC----ccccCCCCCCCcccccc--ccchhhHHHhheeeeeeeccCCCccCCCCchhHHHHHHHHHHH
Q psy4010 776 FACIWWLLAYTHGD----VLSENQNNPQFVPCVIG--VNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVG 849 (1527)
Q Consensus 776 FAlIYylIa~~hGD----l~~~~~~~~~~~pCv~~--v~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~lLv~lQalvG 849 (1527)
.|++||+|+...|= +.+.+-+++....|+++ ...+.-.||+|.=|+||||=- +.|.+ -.-+.++++..++|
T Consensus 144 NaClYf~iS~~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiGe~-P~P~t--~~ey~F~I~d~LiG 220 (536)
T KOG0500|consen 144 NACLYFLISKAIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIGEQ-PPPVT--SSEYAFVIVDTLIG 220 (536)
T ss_pred hhHHHHhhhHhcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhccCC-CCCCc--CchhhHHHHHHHHH
Confidence 79999999876552 22222245667778874 346788999999999999932 34444 45678899999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy4010 850 TIIQAFMTGLVFAKV 864 (1527)
Q Consensus 850 lLl~A~ltGlVFAKf 864 (1527)
++++|.++|-|=.=+
T Consensus 221 vliFAtIvG~VGsmV 235 (536)
T KOG0500|consen 221 VLIFATIVGNVGSMV 235 (536)
T ss_pred HHHHhhhhccHhHHH
Confidence 999999997553333
No 21
>KOG1418|consensus
Probab=92.37 E-value=0.068 Score=61.53 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=39.1
Q ss_pred cchhhHHHhheeeeeeeccCCCccCCCCchhH--------HHHHHHHHHHHHHHHHHH
Q psy4010 808 NSFASSLLFSIETQHTIGYGSRSTTTECPEAI--------WLMCVQSIVGTIIQAFMT 857 (1527)
Q Consensus 808 ~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~--------lLv~lQalvGlLl~A~lt 857 (1527)
-+|.+||||++.|+||||||+..|.+. .+. ..+.+..++|+...+.+.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTL--LGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCC--cceeeccccccchhHHHHHhhhhHHHHHh
Confidence 789999999999999999999998763 222 467777888887777766
No 22
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=90.65 E-value=0.17 Score=51.81 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=46.1
Q ss_pred cccccchhhHHHhheeeeeeeccCCCccC---CCCchhHHHH-HHHHHHHHHHHHHHHHHH
Q psy4010 804 VIGVNSFASSLLFSIETQHTIGYGSRSTT---TECPEAIWLM-CVQSIVGTIIQAFMTGLV 860 (1527)
Q Consensus 804 v~~v~sF~~AFlFSVET~TTIGYG~~~Pt---~~Cp~a~lLv-~lQalvGlLl~A~ltGlV 860 (1527)
..+.++|..++++..+++||.|+|+..+. ..-+.+.+.. ++..+.++++.++++|++
T Consensus 140 ~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 140 YENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 45678999999999999999999999875 1224555555 888899999999999875
No 23
>KOG4404|consensus
Probab=88.81 E-value=0.5 Score=55.73 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=40.6
Q ss_pred cchhhHHHhheeeeeeeccCCCccCCC------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy4010 808 NSFASSLLFSIETQHTIGYGSRSTTTE------CPEAIWLMCVQSIVGTIIQAFMTGLVFAKVAR 866 (1527)
Q Consensus 808 ~sF~~AFlFSVET~TTIGYG~~~Pt~~------Cp~a~lLv~lQalvGlLl~A~ltGlVFAKfSR 866 (1527)
=+|.+|+||...|+||||+||..+... =|.=.+...+=.++|+-+.+...-++.-+|-.
T Consensus 185 Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t 249 (350)
T KOG4404|consen 185 WSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMT 249 (350)
T ss_pred cchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999865321 12223444455666777776666666666643
No 24
>KOG1420|consensus
Probab=87.67 E-value=0.37 Score=59.62 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=47.0
Q ss_pred ccchhhHHHhheeeeeeeccCCCccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy4010 807 VNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVA 865 (1527)
Q Consensus 807 v~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~lLv~lQalvGlLl~A~ltGlVFAKfS 865 (1527)
-.+++++.||-+.||+|||||++|-.+.| |.+.+.+-.+.|+-++|--+-=+.--+-
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~l--grlfmvffil~glamfasyvpeiielig 342 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTL--GRLFMVFFILGGLAMFASYVPEIIELIG 342 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhh--hHHHHHHHHHHHHHHHHhhhHHHHHHHc
Confidence 45899999999999999999999988866 8888888889999888776655544443
No 25
>KOG0499|consensus
Probab=87.08 E-value=0.52 Score=59.00 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=46.4
Q ss_pred cccchhhHHHhheeeeeeeccCCCccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy4010 806 GVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVAR 866 (1527)
Q Consensus 806 ~v~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~lLv~lQalvGlLl~A~ltGlVFAKfSR 866 (1527)
..+.++.+|||++-|.|||| |...|.+ -.-++..++.-+.|++++|+++|=+=--++.
T Consensus 400 ~Gn~YiRCyyfa~kt~~tiG-~~P~P~~--~~E~Vf~~~~w~mGVFvFslliGQmRDvi~a 457 (815)
T KOG0499|consen 400 EGNEYIRCYYFAVKTLITIG-GLPEPQT--LFEIVFQLLNWFMGVFVFSLLIGQMRDVIGA 457 (815)
T ss_pred CCCceeeehhhHHHHHHHhc-CCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35789999999999999999 5566655 4566778899999999999999976444433
No 26
>KOG0501|consensus
Probab=84.65 E-value=0.94 Score=56.59 Aligned_cols=55 Identities=24% Similarity=0.423 Sum_probs=44.5
Q ss_pred cchhhHHHhheeeeeeeccCCCccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4010 808 NSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKV 864 (1527)
Q Consensus 808 ~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~lLv~lQalvGlLl~A~ltGlVFAKf 864 (1527)
.-+.+++||....+||||||.++|+++- -.++..+-+++|.++-|-+.|-|-.-|
T Consensus 422 S~YissLYfTMt~mttvGFGNiA~~TD~--EKiF~v~mMii~aLLYAtIFG~vTTI~ 476 (971)
T KOG0501|consen 422 SAYISSLYFTMTCMTTVGFGNIAPNTDN--EKIFGVCMMIIGALLYATIFGHVTTII 476 (971)
T ss_pred ceehhhhhhhhhhhhcccccccCCCccH--HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4688999999999999999999998863 566777778888888888877654444
No 27
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=78.72 E-value=1.4 Score=48.33 Aligned_cols=75 Identities=17% Similarity=0.129 Sum_probs=58.0
Q ss_pred eeeehhhHHHHhh------hcCCccccCCCCCCCccccccccchhhHHHhheeeeeeeccCCCccCCCCchhHHHHHHHH
Q psy4010 773 LKSFACIWWLLAY------THGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQS 846 (1527)
Q Consensus 773 illFAlIYylIa~------~hGDl~~~~~~~~~~~pCv~~v~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~lLv~lQa 846 (1527)
.++||+-|+=.-| .+|++... .....+|+|.+|||...-||-+--|..+++ ...+-++.+|+
T Consensus 100 h~~FAl~YA~~yy~~~~~~~~~gl~FP----------~~~~P~y~DFlYfsftiG~t~q~SDv~v~s--~~~Rr~vl~hs 167 (180)
T PF07077_consen 100 HTVFALHYAHLYYRSRGGGEPGGLDFP----------GDWEPDYWDFLYFSFTIGMTFQTSDVNVTS--RRMRRLVLLHS 167 (180)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCCcCC----------CCCCCCchhhhHHHHHHHhhccccCCCcCC--HHHHHHHHHHH
Confidence 3788888887666 23333221 123468999999999999998888888777 67999999999
Q ss_pred HHHHHHHHHHHHH
Q psy4010 847 IVGTIIQAFMTGL 859 (1527)
Q Consensus 847 lvGlLl~A~ltGl 859 (1527)
+++.+++++++++
T Consensus 168 llSF~Fnt~ilAl 180 (180)
T PF07077_consen 168 LLSFFFNTVILAL 180 (180)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998763
No 28
>KOG3193|consensus
Probab=75.78 E-value=1.1 Score=55.37 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.2
Q ss_pred cchhhHHHhheeeeeeeccCCCccC
Q psy4010 808 NSFASSLLFSIETQHTIGYGSRSTT 832 (1527)
Q Consensus 808 ~sF~~AFlFSVET~TTIGYG~~~Pt 832 (1527)
-+....|||-+.|++|||||+-+|.
T Consensus 216 i~lf~s~y~v~vtfstvgygd~~pd 240 (1087)
T KOG3193|consen 216 IDLFTSFYFVMVTFSTVGYGDWYPD 240 (1087)
T ss_pred eeeeeeEEEEEEEEeeccccccccc
Confidence 4667899999999999999999874
No 29
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=53.30 E-value=2e+02 Score=30.74 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHH-HHcCcccccceeeeccceEEeecCCeEEEEEEEeeCCCCceeEeeEEEEEEE
Q psy4010 848 VGTIIQAFMTGLVFA-KVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLV 914 (1527)
Q Consensus 848 vGlLl~A~ltGlVFA-KfSRPkkRA~TIlFSk~AVIs~rDG~~cLMFRVaNlR~ks~LIea~Vrv~Li 914 (1527)
+++++.+.++|++.- -++...+.+. +.=+..-+++..+|+.+..|+|-|.- ...--.++|+..|.
T Consensus 10 Is~~ill~viglv~y~~l~~~~~pp~-l~v~~~~~~r~~~gqyyVpF~V~N~g-g~TAasV~V~geL~ 75 (122)
T TIGR02588 10 ISTLILAAMFGLVAYDWLRYSNKAAV-LEVAPAEVERMQTGQYYVPFAIHNLG-GTTAAAVNIRGELR 75 (122)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCe-EEEeehheeEEeCCEEEEEEEEEeCC-CcEEEEEEEEEEEc
Confidence 455555666666544 4455444432 44444445788999999999999998 44444555555443
No 30
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=24.84 E-value=47 Score=34.28 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=14.8
Q ss_pred ccccChhhHHHHHHHHHH
Q psy4010 1263 GIALTAKGRQLYDYLLDK 1280 (1527)
Q Consensus 1263 g~AlT~kGr~lYd~ll~~ 1280 (1527)
=+.||+||+++++++...
T Consensus 89 ~l~LT~~G~~~~~~~~~~ 106 (144)
T PRK03573 89 RIKLTEKAEPLISEVEAV 106 (144)
T ss_pred eeEEChHHHHHHHHHHHH
Confidence 356999999999987754
No 31
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=24.35 E-value=1.1e+02 Score=37.26 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=44.3
Q ss_pred cchhhHHHhheeeeeeeccCCCccCCCCchhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHcCc
Q psy4010 808 NSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVG-----------TIIQAFMTGLVFAKVARP 867 (1527)
Q Consensus 808 ~sF~~AFlFSVET~TTIGYG~~~Pt~~Cp~a~lLv~lQalvG-----------lLl~A~ltGlVFAKfSRP 867 (1527)
..+..+++|.+.+.+|-||.......--+.+.++..+-|++| +.-.+++...+.+.+.|-
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~gSTaGGiK~~r~~vl~~~~~~~~~~~ 300 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCSGSTAGGIKTTTFAILLKQVYREIRRG 300 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCCcccCCchHHHHHHHHHHHHHHHHHcc
Confidence 578999999999999999987754444456778888888888 344556666666666533
No 32
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=23.84 E-value=6.6e+02 Score=27.04 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhh-hcCCCCCCCeeeeccceEEeecCCeEEEEEEEeeCCCCceeeecEEEEEEE
Q psy4010 318 SRLQAFMTGLVFAK-VARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLV 382 (1527)
Q Consensus 318 ~lIdAfmtGLVFAK-fSRPkkRa~TI~FSk~AVIs~rDGklcLMFRVgNlR~ks~LIea~VRa~Li 382 (1527)
++|-+.++|++.-- ++.+.+. --+.=+..-++++.+|+.+..|+|-|.-.+ .--.++|++-|.
T Consensus 12 ~~ill~viglv~y~~l~~~~~p-p~l~v~~~~~~r~~~gqyyVpF~V~N~gg~-TAasV~V~geL~ 75 (122)
T TIGR02588 12 TLILAAMFGLVAYDWLRYSNKA-AVLEVAPAEVERMQTGQYYVPFAIHNLGGT-TAAAVNIRGELR 75 (122)
T ss_pred HHHHHHHHHHHHHHhhccCCCC-CeEEEeehheeEEeCCEEEEEEEEEeCCCc-EEEEEEEEEEEc
Confidence 45556667766544 4544444 334444445588899999999999998842 334445555443
No 33
>PRK11716 DNA-binding transcriptional regulator IlvY; Provisional
Probab=23.47 E-value=43 Score=36.56 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=15.3
Q ss_pred ccccccChhhHHHHHHH
Q psy4010 1261 QRGIALTAKGRQLYDYL 1277 (1527)
Q Consensus 1261 qRg~AlT~kGr~lYd~l 1277 (1527)
.||+.||++|++||++.
T Consensus 28 ~r~~~lT~~G~~l~~~a 44 (269)
T PRK11716 28 NRSVTLTEAGEELRPFA 44 (269)
T ss_pred CCceeECHhHHHHHHHH
Confidence 58999999999999864
No 34
>KOG0500|consensus
Probab=23.36 E-value=64 Score=40.85 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy4010 141 WRWTMLVCSMGFLLSWIVSYDTYQTLLDTHSLVAD 175 (1527)
Q Consensus 141 WRw~LliF~~sFl~SWlvFa~iyw~La~~H~llaD 175 (1527)
||-..++++..-+.+| .|++|++|+..-|.-.|
T Consensus 128 fri~~lv~~~~ilfHW--NaClYf~iS~~~g~~~d 160 (536)
T KOG0500|consen 128 FRISKLVHYCLILFHW--NACLYFLISKAIGFTTD 160 (536)
T ss_pred HHHHHHHHHHHHHHHH--hhHHHHhhhHhcCcccc
Confidence 7888899999999999 68999999887765555
No 35
>PRK05529 cell division protein FtsQ; Provisional
Probab=22.60 E-value=93 Score=36.05 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=34.7
Q ss_pred cccccc-cccccccCCHHHHHHHHHHHHhh-CCe-ecccccCCCCCCCcee
Q psy4010 1162 ERLNEE-RHGAIRLGTPEELYNIRRLFSVM-NMH-PVGYYDLSTAGVPVHS 1209 (1527)
Q Consensus 1162 ~rl~~E-RHGAIR~Gt~~El~~~~r~favm-gM~-pVgyYDl~~agvPvhs 1209 (1527)
-.+.+. -.-.+..|++++++.=+++...+ ... +..|||+|....|+.+
T Consensus 205 v~l~L~ndG~~V~~G~~~~~~~Ka~vl~~lL~~~~~~~~~DVs~P~~p~~~ 255 (255)
T PRK05529 205 VNLTLRNSGKTVFWGSFENSKLKAKVLEALLKIPGHYSSYDVSAPEAPAVG 255 (255)
T ss_pred EEEEEecCCEEEEeCCcchHHHHHHHHHHHHhCcCCCcEEEecCCCCCCCC
Confidence 345555 33356689999999988888855 222 4679999999999753
No 36
>TIGR01429 AMP_deaminase AMP deaminase. This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the model.
Probab=22.30 E-value=48 Score=42.96 Aligned_cols=52 Identities=31% Similarity=0.614 Sum_probs=40.8
Q ss_pred HHHHHHHHhhCCeecccccCCCCCCCcee--cccccCChhhhhcCCcchhhhhhhhhhc
Q psy4010 1181 YNIRRLFSVMNMHPVGYYDLSTAGVPVHS--TAFRSIDAYALNQSPFRVFTSLLRLELI 1237 (1527)
Q Consensus 1181 ~~~~r~favmgM~pVgyYDl~~agvPvhs--TaFRp~~~~~L~~npFrvftslLr~eli 1237 (1527)
-||+.+|..+|+-| |||++.++=||+ ..|--.|.=.+.-||+.- |.||-=.+
T Consensus 211 ~TL~evf~~l~l~~---~dltvd~Ldv~a~~~~fhrfd~fn~kynp~G~--s~Lr~iFL 264 (611)
T TIGR01429 211 LTLREVFDSLHLDP---YDLSVDTLDVHADRNTFHRFDKFNLKYNPVGE--SRLREIFL 264 (611)
T ss_pred ccHHHHHHHcCCCh---hhCcHhhhCCcCCCCccccccccccccCccch--HHHHHHHh
Confidence 79999999999987 799999988886 456666777777888885 56664444
No 37
>COG3771 Predicted membrane protein [Function unknown]
Probab=20.98 E-value=89 Score=31.67 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4010 146 LVCSMGFLLSWIVSYDTYQTL 166 (1527)
Q Consensus 146 liF~~sFl~SWlvFa~iyw~L 166 (1527)
.+|+++|++.|+++|..|..+
T Consensus 47 ~lF~~G~~lgwli~g~fy~k~ 67 (97)
T COG3771 47 TLFAAGFALGWLICGLFYLKV 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999754
No 38
>PLN03055 AMP deaminase; Provisional
Probab=20.33 E-value=71 Score=41.48 Aligned_cols=140 Identities=20% Similarity=0.281 Sum_probs=81.4
Q ss_pred EeecCCCcchhhhhhhccccCCCCCCCCChhHHHHHHHHHHHHhhh-----------hhcCChhh---------HHHHHH
Q psy4010 1081 IVPIPSTTNLFTAWRTFASDSRSGGDVMSPNAIRKLFSQSMSEMYK-----------KQVPQYST---------LLELVR 1140 (1527)
Q Consensus 1081 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~f~~ams~mY~-----------~EVP~Y~~---------L~~lv~ 1140 (1527)
+.|||+.+..+.-.+...+-+++|. .-+.-.=|-.+-..=..||+ ..|| ++| =+.+.+
T Consensus 82 ~~~~p~~~~f~~D~~~l~~~~~~g~-~~s~~~~RL~~Le~kf~L~~~lN~~~E~~~~k~~p-~rDFyn~rKVDthvh~s~ 159 (602)
T PLN03055 82 LFPVPDATTFFTDMHRILRIVSLGN-VRTFCHHRLKLLEQKFSLHLMLNADREFLAQKSAP-HRDFYNVRKVDTHVHHSS 159 (602)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhccCC-CCCceeeeEeeccccccc
Confidence 5789988777777666654443332 24445555555555555554 2244 222 222334
Q ss_pred HhcHHHHhcCCcccccccccccccccccccccccCCHHHHHHHHHHHHhhCCeecccccCCCCCCCceec--ccccCChh
Q psy4010 1141 QVNLDTLANSGKLDEMSAEDLERLNEERHGAIRLGTPEELYNIRRLFSVMNMHPVGYYDLSTAGVPVHST--AFRSIDAY 1218 (1527)
Q Consensus 1141 ~vn~~~l~~~~~~~~~~~~~~~rl~~ERHGAIR~Gt~~El~~~~r~favmgM~pVgyYDl~~agvPvhsT--aFRp~~~~ 1218 (1527)
.+|++.|-.-= ...-..+.+|+-..|-| . --||+.+|..+|+-+ |||++.++=||+. .|-.-|.-
T Consensus 160 cm~qk~LL~FI--k~k~~~~pd~vV~~~~g-----k---~~TL~evfe~l~~~~---~dLtVd~Ldvha~~~~fhrfD~f 226 (602)
T PLN03055 160 CMNQKHLLRFI--KSKLRKEPDEVVIFRDG-----K---YLTLREVFESLDLTG---YDLNVDLLDVHADKNTFHRFDKF 226 (602)
T ss_pred cCCHHHHHHHH--HHHHHcCCCcEeecCCC-----c---chhHHHHHHHcCCCc---ccCcccccCccCCCCcccccccc
Confidence 44444332110 00011222343333433 3 279999999999998 8999998888854 56667777
Q ss_pred hhhcCCcchhhhhhhhhhc
Q psy4010 1219 ALNQSPFRVFTSLLRLELI 1237 (1527)
Q Consensus 1219 ~L~~npFrvftslLr~eli 1237 (1527)
.+.-||++- |.||-=.+
T Consensus 227 n~kynp~g~--s~Lr~iFL 243 (602)
T PLN03055 227 NLKYNPCGQ--SRLREIFL 243 (602)
T ss_pred cccCCccch--HHHHHHHc
Confidence 888999986 56665444
Done!