RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4010
(1527 letters)
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 274 bits (701), Expect = 1e-82
Identities = 113/238 (47%), Positives = 170/238 (71%), Gaps = 3/238 (1%)
Query: 776 FACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTEC 835
F IWWL+AY GD+ ++ +P + PCV +N F S+ LFSIET+ TIGYG R T +C
Sbjct: 60 FGMIWWLIAYIRGDM--DHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKC 117
Query: 836 PEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRV 895
PE I L+ +QS++G+I+ AFM G +F K+++PK+R +TL+FS AVI+ RDG LCLMFRV
Sbjct: 118 PEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMRDGKLCLMFRV 177
Query: 896 GDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRI 955
GD+R SHI+ AS++A L+K++ T+EGE + +++ + D +FL+ P I+ H I
Sbjct: 178 GDLR-NSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEI 236
Query: 956 DEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVR 1013
+++SP ++++ +L E+ EI+ ILEG E+TG T QA++SY+ SEILWG+RF P++
Sbjct: 237 NQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLT 294
Score = 177 bits (450), Expect = 5e-49
Identities = 76/192 (39%), Positives = 118/192 (61%), Gaps = 28/192 (14%)
Query: 320 LQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKA 379
+ AFM G +F K+++PK+R +TL+FS AVI+ RDG LCLMFRVGD+R SHI+ AS++A
Sbjct: 134 VNAFMVGCMFVKISQPKKRAETLVFSTHAVISMRDGKLCLMFRVGDLR-NSHIVEASIRA 192
Query: 380 YLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIF 439
L+K++ T+EGE + +++ V D +F
Sbjct: 193 KLIKSKQTSEGEFIPLNQTDINVGYYTG---------------------------DDRLF 225
Query: 440 LLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILW 499
L+ P I+ H I+++SP ++++ +L E+ EI+ ILEG E+TG T QA++SY+ SEILW
Sbjct: 226 LVSPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILW 285
Query: 500 GHRFEPLVRKDK 511
G+RF P++ +
Sbjct: 286 GYRFTPVLTLED 297
Score = 60.9 bits (147), Expect = 1e-09
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 101 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIV 158
++ +R + K+G N+ N+ + R +L DIFTTLVD++WR+ +L+ M + ++W+
Sbjct: 3 KRKIQRYVRKDGKCNVHHGNVRETYR-YLTDIFTTLVDLKWRFNLLIFVMVYTVTWLF 59
Score = 51.7 bits (123), Expect = 1e-06
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 639 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLLALSYPVL 692
++ +R + K+G N+ N+ + R +L DIFTTLVD++WR+ +L+ + +
Sbjct: 3 KRKIQRYVRKDGKCNVHHGNVRETYR-YLTDIFTTLVDLKWRFNLLIFVMVYTV 55
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 271 bits (694), Expect = 1e-81
Identities = 125/238 (52%), Positives = 167/238 (70%), Gaps = 2/238 (0%)
Query: 776 FACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTEC 835
F I+WL+A HGD L + F PCV+ VN F ++ LFSIETQ TIGYG R T EC
Sbjct: 62 FGLIFWLIALIHGD-LENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEEC 120
Query: 836 PEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRV 895
P A++++ VQSIVG II +FM G + AK+ARPK+R QTLLFS AV+ RDG LCLM+RV
Sbjct: 121 PLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMRDGKLCLMWRV 180
Query: 896 GDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRI 955
G++R KSHI+ A V+A L+K R T EGE + ++ + D+ IFL+ P ++H I
Sbjct: 181 GNLR-KSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLVSPITILHEI 239
Query: 956 DEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVR 1013
+E+SPL+ ++ + L T+ FEI+ ILEG E+T TTQA++SYL SEILWGHRFEP++
Sbjct: 240 NEDSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVLF 297
Score = 177 bits (449), Expect = 7e-49
Identities = 85/192 (44%), Positives = 118/192 (61%), Gaps = 28/192 (14%)
Query: 320 LQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKA 379
+ +FM G + AK+ARPK+R QTLLFS AV+ RDG LCLM+RVG++R KSHI+ A V+A
Sbjct: 137 IDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMRDGKLCLMWRVGNLR-KSHIVEAHVRA 195
Query: 380 YLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIF 439
L+K R T EGE + ++ V D IF
Sbjct: 196 QLIKPRITEEGEYIPLDQIDIDVGFDKG---------------------------LDRIF 228
Query: 440 LLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILW 499
L+ P ++H I+E+SPL+ ++ + L T+ FEI+ ILEG E+T TTQA++SYL SEILW
Sbjct: 229 LVSPITILHEINEDSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILW 288
Query: 500 GHRFEPLVRKDK 511
GHRFEP++ ++K
Sbjct: 289 GHRFEPVLFEEK 300
Score = 65.6 bits (159), Expect = 3e-11
Identities = 23/58 (39%), Positives = 40/58 (68%)
Query: 101 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIV 158
RK + R + KNG N+ N+ + + ++ D+FTT VDI+WR+ +L+ S+ FL+SW++
Sbjct: 4 RKCRNRFVKKNGQCNVEFTNMDDKPQRYIADMFTTCVDIRWRYMLLLFSLAFLVSWLL 61
Score = 57.1 bits (137), Expect = 2e-08
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 639 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLLALSYPVL 692
RK + R + KNG N+ N+ + + ++ D+FTT VDI+WR+ +LL ++
Sbjct: 4 RKCRNRFVKKNGQCNVEFTNMDDKPQRYIADMFTTCVDIRWRYMLLLFSLAFLV 57
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 226 bits (576), Expect = 4e-66
Identities = 90/239 (37%), Positives = 134/239 (56%), Gaps = 18/239 (7%)
Query: 775 SFACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTE 834
+FA ++ L + + F + FS+ET T+GYG +
Sbjct: 59 AFATLYMLGSAPIANQ---------------FPAGFGGAFFFSVETLATVGYGDM--HPQ 101
Query: 835 CPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFR 894
A W+ ++ VG A TG F K+++PK+R +TL+FS AVI+ RDG L LMFR
Sbjct: 102 TVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKRAETLMFSEHAVISMRDGKLTLMFR 161
Query: 895 VGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHR 954
VG++R SH++ A ++ L+K+R T EGE L EL + +FL+ P + H
Sbjct: 162 VGNLR-NSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHV 220
Query: 955 IDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVR 1013
ID +SP YD++ + + TE+FE++ ILEG E+TG T QA+TSY E+LWGHRF P++
Sbjct: 221 IDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVIS 279
Score = 164 bits (416), Expect = 8e-45
Identities = 75/192 (39%), Positives = 108/192 (56%), Gaps = 28/192 (14%)
Query: 320 LQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKA 379
A TG F K+++PK+R +TL+FS AVI+ RDG L LMFRVG++R SH++ A ++
Sbjct: 119 SIALATGCAFIKMSQPKKRAETLMFSEHAVISMRDGKLTLMFRVGNLR-NSHMVSAQIRC 177
Query: 380 YLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIF 439
L+K+R T EGE L EL V +F
Sbjct: 178 KLLKSRQTPEGEFLPLDQLELDVGFST---------------------------GADQLF 210
Query: 440 LLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILW 499
L+ P + H ID +SP YD++ + + TE+FE++ ILEG E+TG T QA+TSY E+LW
Sbjct: 211 LVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLW 270
Query: 500 GHRFEPLVRKDK 511
GHRF P++ ++
Sbjct: 271 GHRFFPVISLEE 282
Score = 64.7 bits (157), Expect = 5e-11
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 102 KLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIVS 159
K ++R +DKNG N+ N+ +L D+FTTLVD++WRW + ++ FLL
Sbjct: 3 KKRQRFVDKNGRCNVQHGNLGSETSRYLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAF 60
Score = 54.0 bits (129), Expect = 2e-07
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 640 KLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLLALSYPVL 692
K ++R +DKNG N+ N+ +L D+FTTLVD++WRW + +L
Sbjct: 3 KKRQRFVDKNGRCNVQHGNLGSETSRYLSDLFTTLVDLKWRWFFVSLAVLFLL 55
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 219 bits (559), Expect = 9e-64
Identities = 71/259 (27%), Positives = 112/259 (43%), Gaps = 24/259 (9%)
Query: 775 SFACIWWL--LAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTT 832
F L L Y GD F + FS+ET T+GYG
Sbjct: 70 LFVVNNTLFALLYQLGD----------APIANQSPPGFVGAFFFSVETLATVGYGDMHPQ 119
Query: 833 TECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLM 892
T AI ++ VG A TGLVFA+ ARP+ + F+R A++ +G + LM
Sbjct: 120 TVYAHAI--ATLEIFVGMSGIALSTGLVFARFARPRAKIM---FARHAIVRPFNGRMTLM 174
Query: 893 FRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVV 952
R + R ++ I A K L++ ++EG L +LKL + L ++
Sbjct: 175 VRAANAR-QNVIAEARAKMRLMRREHSSEGYSLMKI-HDLKL---VRNEHPIFLLGWNMM 229
Query: 953 HRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLV 1012
H IDE SPL+ + L + ++ ++EG+ E+T Q QA+ ++ +I W HR+ L+
Sbjct: 230 HVIDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQVMQARHAWEHDDIRWHHRYVDLM 289
Query: 1013 RSVSKQLVT--SSIHMFVP 1029
V + + P
Sbjct: 290 SDVDGMTHIDYTRFNDTEP 308
Score = 158 bits (401), Expect = 1e-42
Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 35/192 (18%)
Query: 320 LQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKA 379
A TGLVFA+ ARP+ + F+R A++ +G + LM R + R ++ I A K
Sbjct: 137 GIALSTGLVFARFARPRAKIM---FARHAIVRPFNGRMTLMVRAANAR-QNVIAEARAKM 192
Query: 380 YLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIF 439
L++ ++EG L +
Sbjct: 193 RLMRREHSSEGYSLMKI-------------------------------HDLKLVRNEHPI 221
Query: 440 LLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILW 499
L ++H IDE SPL+ + L + ++ ++EG+ E+T Q QA+ ++ +I W
Sbjct: 222 FLLGWNMMHVIDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQVMQARHAWEHDDIRW 281
Query: 500 GHRFEPLVRKDK 511
HR+ L+
Sbjct: 282 HHRYVDLMSDVD 293
Score = 55.2 bits (132), Expect = 7e-08
Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 97 SPFYRKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSW 156
SP + + +GT +I + +D++ + + W + F+++
Sbjct: 19 SPARKPPRGGRRIWSGTREVIAYGMPAS---VWRDLYYWALKVSWPVFFASLAALFVVNN 75
Query: 157 IV 158
+
Sbjct: 76 TL 77
Score = 46.3 bits (109), Expect = 4e-05
Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 628 HHRKLRGSPFYRKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLLAL 687
SP + + +GT +I + +D++ + + W
Sbjct: 12 DSFAQAASPARKPPRGGRRIWSGTREVIAYGMPAS---VWRDLYYWALKVSWPVFFASLA 68
Query: 688 SYPVL 692
+ V+
Sbjct: 69 ALFVV 73
>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport,
membrane protein; 17.20A {Mus musculus}
Length = 309
Score = 211 bits (538), Expect = 3e-61
Identities = 77/204 (37%), Positives = 118/204 (57%), Gaps = 4/204 (1%)
Query: 812 SSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVA---RPK 868
S++ S E + + + ++ Q + + + F V +
Sbjct: 9 YSIVSSEEDGMKLATMAVANGFGNGKSKVHTRQQCRSRFVKKDGHCNVQFINVGEKGQRG 68
Query: 869 QRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPF 928
R +TL+FS AVI RDG LCLM+RVG++R KSH++ A V+A L+K+R T+EGE +
Sbjct: 69 GRNETLVFSHNAVIAMRDGKLCLMWRVGNLR-KSHLVEAHVRAQLLKSRITSEGEYIPLD 127
Query: 929 LSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTG 988
++ + D IFL+ P +VH IDE+SPLYD++ + + FEI+ ILEG E+T
Sbjct: 128 QIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATA 187
Query: 989 QTTQAKTSYLPSEILWGHRFEPLV 1012
TTQ ++SYL +EILWGHR+EP++
Sbjct: 188 MTTQCRSSYLANEILWGHRYEPVL 211
Score = 190 bits (483), Expect = 7e-54
Identities = 81/263 (30%), Positives = 129/263 (49%), Gaps = 33/263 (12%)
Query: 320 LQAFMTGLVFAKVA---RPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGAS 376
+ + F V + R +TL+FS AVI RDG LCLM+RVG++R KSH++ A
Sbjct: 49 KKDGHCNVQFINVGEKGQRGGRNETLVFSHNAVIAMRDGKLCLMWRVGNLR-KSHLVEAH 107
Query: 377 VKAYLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDS 436
V+A L+K+R T+EGE + ++ V D+
Sbjct: 108 VRAQLLKSRITSEGEYIPLDQIDINVGFDSG---------------------------ID 140
Query: 437 DIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSE 496
IFL+ P +VH IDE+SPLYD++ + + FEI+ ILEG E+T TTQ ++SYL +E
Sbjct: 141 RIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLANE 200
Query: 497 ILWGHRFEPLVRKDKPCDKPHFKSYDDL--INEALLESNIQHAKSKSENTLLAQYRHKRA 554
ILWGHR+EP++ ++K K + + + L S A+ K + + ++
Sbjct: 201 ILWGHRYEPVLFEEKHYYKVDYSRFHKTYEVPNTPLCSARDLAEKKYILSNANSFCYENE 260
Query: 555 SRAEEELFDDNGSEERIPIDETE 577
+ +++ T+
Sbjct: 261 VALTSKEEEEDSENGVPESTSTD 283
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 210 bits (536), Expect = 5e-61
Identities = 62/235 (26%), Positives = 95/235 (40%), Gaps = 21/235 (8%)
Query: 778 CIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTECPE 837
++ L GDV+ SF + FS++T TIGYG P
Sbjct: 62 ALFALAYLACGDVIENA-----------RPGSFTDAFFFSVQTMATIGYGKL--IPIGPL 108
Query: 838 AIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGD 897
A L+ ++++ G + A L++A+ RP LFS VI+ +G LM R+ +
Sbjct: 109 ANTLVTLEALCGMLGLAVAASLIYARFTRPTAGV---LFSSRMVISDFEGKPTLMMRLAN 165
Query: 898 MREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRIDE 957
+R II A V LV++ + EG V F V+H ID
Sbjct: 166 LR-IEQIIEADVHLVLVRSEISQEGMVFRRF----HDLTLTRSRSPIFSLSWTVMHPIDH 220
Query: 958 ESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLV 1012
SP+Y + L E + + G E+ Q A+ +Y EI+WG F +
Sbjct: 221 HSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGGHFVDVF 275
Score = 155 bits (392), Expect = 7e-42
Identities = 44/192 (22%), Positives = 65/192 (33%), Gaps = 35/192 (18%)
Query: 320 LQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKA 379
A L++A+ RP LFS VI+ +G LM R+ ++R II A V
Sbjct: 123 GLAVAASLIYARFTRPTAGV---LFSSRMVISDFEGKPTLMMRLANLR-IEQIIEADVHL 178
Query: 380 YLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIF 439
LV++ + EG V F
Sbjct: 179 VLVRSEISQEGMVFRRF-------------------------------HDLTLTRSRSPI 207
Query: 440 LLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILW 499
V+H ID SP+Y + L E + + G E+ Q A+ +Y EI+W
Sbjct: 208 FSLSWTVMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIW 267
Query: 500 GHRFEPLVRKDK 511
G F +
Sbjct: 268 GGHFVDVFTTLP 279
Score = 67.4 bits (164), Expect = 7e-12
Identities = 12/58 (20%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 101 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIV 158
K R ++ +G+ NI ++ + KR +L D + L+ + W + + + +L++ +
Sbjct: 8 PARKPRILNSDGSSNITRLGLEKRG--WLDDHYHDLLTVSWPVFITLITGLYLVTNAL 63
Score = 57.0 bits (137), Expect = 2e-08
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 639 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLL 685
K R ++ +G+ NI ++ + KR +L D + L+ + W + L
Sbjct: 8 PARKPRILNSDGSSNITRLGLEKRG--WLDDHYHDLLTVSWPVFITL 52
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1,
andersen'S mutation, metal transport; 2.02A {Mus
musculus}
Length = 208
Score = 201 bits (512), Expect = 4e-59
Identities = 69/159 (43%), Positives = 103/159 (64%), Gaps = 1/159 (0%)
Query: 854 AFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYL 913
+ ++R +TL+FS AVI RDG LCLM+RVG+++ KSH++ A V+A L
Sbjct: 10 KKDGHCNVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLQ-KSHLVEAHVRAQL 68
Query: 914 VKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEK 973
+K+R T+EGE + ++ + D IFL+ P +VH IDE+SPLYD++ + +
Sbjct: 69 LKSRITSEGEYIPLDQIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNAD 128
Query: 974 FEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLV 1012
FEI+ ILEG E+T T Q ++SYL +EILWGHR+EP++
Sbjct: 129 FEIVVILEGMVEATAMTKQCRSSYLANEILWGHRYEPVL 167
Score = 192 bits (489), Expect = 6e-56
Identities = 73/194 (37%), Positives = 109/194 (56%), Gaps = 28/194 (14%)
Query: 318 SRLQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASV 377
SR + ++R +TL+FS AVI RDG LCLM+RVG+++ KSH++ A V
Sbjct: 6 SRFVKKDGHCNVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLQ-KSHLVEAHV 64
Query: 378 KAYLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSD 437
+A L+K+R T+EGE + ++ V D+
Sbjct: 65 RAQLLKSRITSEGEYIPLDQIDINVGFDSG---------------------------IDR 97
Query: 438 IFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEI 497
IFL+ P +VH IDE+SPLYD++ + + FEI+ ILEG E+T T Q ++SYL +EI
Sbjct: 98 IFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTKQCRSSYLANEI 157
Query: 498 LWGHRFEPLVRKDK 511
LWGHR+EP++ ++K
Sbjct: 158 LWGHRYEPVLFEEK 171
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH;
cytoplasmic assembly, ION channel, beta-barrel, transport
PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A
3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A
Length = 208
Score = 193 bits (491), Expect = 3e-56
Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 3/157 (1%)
Query: 857 TGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKA 916
+ V R +TL+FS AVI+ RDG LCLMFRVGD+R SHI+ AS++A L+K+
Sbjct: 17 CNVHHGNVREK--RAETLVFSTHAVISMRDGKLCLMFRVGDLR-NSHIVEASIRAKLIKS 73
Query: 917 RTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEI 976
+ T+EGE + +++ + D +FL+ P I+ H I+++SP ++++ +L E+ EI
Sbjct: 74 KQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQQSPFWEISKAQLPKEELEI 133
Query: 977 IAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVR 1013
+ ILEG E+TG T QA++SY+ SEILWG+RF P++
Sbjct: 134 VVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLT 170
Score = 181 bits (461), Expect = 4e-52
Identities = 69/187 (36%), Positives = 106/187 (56%), Gaps = 30/187 (16%)
Query: 325 TGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKA 384
+ V R +TL+FS AVI+ RDG LCLMFRVGD+R SHI+ AS++A L+K+
Sbjct: 17 CNVHHGNVREK--RAETLVFSTHAVISMRDGKLCLMFRVGDLR-NSHIVEASIRAKLIKS 73
Query: 385 RTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPT 444
+ T+EGE + +++ V D +FL+ P
Sbjct: 74 KQTSEGEFIPLNQTDINVGYYTG---------------------------DDRLFLVSPL 106
Query: 445 IVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFE 504
I+ H I+++SP ++++ +L E+ EI+ ILEG E+TG T QA++SY+ SEILWG+RF
Sbjct: 107 IISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFT 166
Query: 505 PLVRKDK 511
P++ +
Sbjct: 167 PVLTLED 173
>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta
barrel, cytoplasmic domain, inward rectifier potassium
channel, metal transport; 1.80A {Mus musculus} SCOP:
b.1.18.16 PDB: 3k6n_A 1u4e_A
Length = 207
Score = 192 bits (490), Expect = 5e-56
Identities = 67/163 (41%), Positives = 100/163 (61%), Gaps = 3/163 (1%)
Query: 851 IIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVK 910
+ + + + +R +TL+FS AVI+ RDG L LMFRVG++R SH++ A ++
Sbjct: 9 VDKNGRCNVQHGNL--GSERAETLMFSEHAVISMRDGKLTLMFRVGNLR-NSHMVSAQIR 65
Query: 911 AYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLL 970
L+K+R T EGE L EL + +FL+ P + H ID +SP YD++ + +
Sbjct: 66 CKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQ 125
Query: 971 TEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVR 1013
TE+FE++ ILEG E+TG T QA+TSY E+LWGHRF P++
Sbjct: 126 TEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVIS 168
Score = 179 bits (456), Expect = 2e-51
Identities = 68/188 (36%), Positives = 100/188 (53%), Gaps = 30/188 (15%)
Query: 324 MTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVK 383
+ + +R +TL+FS AVI+ RDG L LMFRVG++R SH++ A ++ L+K
Sbjct: 14 RCNVQHGNL--GSERAETLMFSEHAVISMRDGKLTLMFRVGNLR-NSHMVSAQIRCKLLK 70
Query: 384 ARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWP 443
+R T EGE L EL V +FL+ P
Sbjct: 71 SRQTPEGEFLPLDQLELDVGFSTG---------------------------ADQLFLVSP 103
Query: 444 TIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRF 503
+ H ID +SP YD++ + + TE+FE++ ILEG E+TG T QA+TSY E+LWGHRF
Sbjct: 104 LTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRF 163
Query: 504 EPLVRKDK 511
P++ ++
Sbjct: 164 FPVISLEE 171
>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1,
IRK1, inwardly rectifying K channel, rectification,
allergen; 2.41A {Mus musculus}
Length = 270
Score = 194 bits (494), Expect = 8e-56
Identities = 71/153 (46%), Positives = 104/153 (67%), Gaps = 1/153 (0%)
Query: 860 VFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTT 919
+ ++R +TL+FS AVI RDG LCLM+RVG++R KSH++ A V+A L+K+R T
Sbjct: 21 NVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLR-KSHLVEAHVRAQLLKSRIT 79
Query: 920 AEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAI 979
+EGE + ++ + D IFL+ P +VH IDE+SPLYD++ + + FEI+ I
Sbjct: 80 SEGEYIPLDQIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVI 139
Query: 980 LEGTTESTGQTTQAKTSYLPSEILWGHRFEPLV 1012
LEG E+T TTQ ++SYL +EILWGHR+EP++
Sbjct: 140 LEGMVEATAMTTQCRSSYLANEILWGHRYEPVL 172
Score = 183 bits (465), Expect = 6e-52
Identities = 82/261 (31%), Positives = 134/261 (51%), Gaps = 31/261 (11%)
Query: 328 VFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTT 387
+ ++R +TL+FS AVI RDG LCLM+RVG++R KSH++ A V+A L+K+R T
Sbjct: 21 NVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLR-KSHLVEAHVRAQLLKSRIT 79
Query: 388 AEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVV 447
+EGE + ++ V D+ IFL+ P +V
Sbjct: 80 SEGEYIPLDQIDINVGFDSG---------------------------IDRIFLVSPITIV 112
Query: 448 HRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLV 507
H IDE+SPLYD++ + + FEI+ ILEG E+T TTQ ++SYL +EILWGHR+EP++
Sbjct: 113 HEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGHRYEPVL 172
Query: 508 RKDKPCDKPHFKSYDDL--INEALLESNIQHAKSKSENTLLAQYRHKRASRAEEELFDDN 565
++K K + + + L S A+ K + + ++ + +++
Sbjct: 173 FEEKHYYKVDYSRFHKTYEVPNTPLCSARDLAEKKYILSNANSFCYENEVALTSKEEEED 232
Query: 566 GSEERIPIDETELTHDLMDVE 586
SE +P + + +D+
Sbjct: 233 -SENGVPESTSTDSPPGIDLH 252
>2rjb_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.60A {Shigella flexneri}
Length = 455
Score = 193 bits (491), Expect = 3e-53
Identities = 88/170 (51%), Positives = 118/170 (69%), Gaps = 12/170 (7%)
Query: 1108 MSPNAIRKLFSQSMSEMYKKQVPQYSTLLELVRQVNLDTLANSGKLDEM--SAEDLERLN 1165
++ + IR+ FSQ+MS MY+++VPQY TLLELV VNL L N+ +L E +A++L RLN
Sbjct: 5 ITADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPQLHEKMVNADELARLN 64
Query: 1166 EERHGAIRLGTPEELYNIRRLFSVMNMHPVGYYDLSTAGVPVHSTAFRSIDAYALNQSPF 1225
ERHGAIR+GT +EL +RR+F++M M+PV YYDLS AGVPVHSTAFR ID +L ++PF
Sbjct: 65 VERHGAIRVGTAQELATLRRMFAIMGMYPVSYYDLSQAGVPVHSTAFRPIDDASLARNPF 124
Query: 1226 RVFTSLLRLELIEDKVEQSDSPHEAKHTARFGEVEQRGIALTAKGRQLYD 1275
RVFTSLLRLELIE+ + E+ ++ T + RQL +
Sbjct: 125 RVFTSLLRLELIEN----------EILRQKAAEILRQRDIFTPRCRQLLE 164
Score = 126 bits (317), Expect = 1e-30
Identities = 54/93 (58%), Positives = 63/93 (67%), Gaps = 5/93 (5%)
Query: 158 VSYDTYQTLLDTHSLVADIVCFKTPHINHLTPSTLDIDRVQDRMVAQMSRHGSCVPKAVI 217
V +TY+ L + H L+AD+VCF HINHLTP TLDIDRVQ M G PK +I
Sbjct: 196 VDEETYRALHNEHRLIADVVCFPGCHINHLTPRTLDIDRVQSM----MPECG-IEPKILI 250
Query: 218 EGPPRREVPILLRQTSFKALTEDIAVPGRDVGS 250
EGPPRREVPILLRQTSFKAL E + G+ G+
Sbjct: 251 EGPPRREVPILLRQTSFKALEETVLFAGQKQGT 283
Score = 106 bits (265), Expect = 6e-24
Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 1252 HTARFGEVEQRGIALTAKGRQLYDYLLDKTRGSFKGIPDETNSKLYMENLASNFSVFPDD 1311
HTARFGE+EQRG+ALT KGRQLYD LL ++ + +L F FPD
Sbjct: 284 HTARFGEIEQRGVALTPKGRQLYDDLLRNAG-------TGQDNLTHQMHLQETFRTFPDS 336
Query: 1312 LNTLRKEKLAYFNYYVTDK 1330
+R++ LA+F Y +T
Sbjct: 337 EFLMRQQGLAWFRYRLTPS 355
Score = 95.0 bits (236), Expect = 3e-20
Identities = 39/90 (43%), Positives = 52/90 (57%)
Query: 1432 SGKSHLDKNVNDFNLDNYVRAGLIGYEGITYEDFLPVSAAGIFQSNLSTNANHHIESQSS 1491
SG++H + + G + + ITYEDFLPVSAAGIFQSNL +S
Sbjct: 355 SGEAHRQAIHPGDDPQPLIERGWVVAQPITYEDFLPVSAAGIFQSNLGNETQTRSHGNAS 414
Query: 1492 RHDFENALGCSVRDEMKLYEDLEKKSLQDC 1521
R FE ALGC V DE +LY++ E++S + C
Sbjct: 415 REAFEQALGCPVLDEFQLYQEAEERSKRRC 444
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 79.3 bits (195), Expect = 1e-14
Identities = 102/624 (16%), Positives = 184/624 (29%), Gaps = 202/624 (32%)
Query: 531 ESNIQHAKSKSENTLLAQYRHKRASRAEEELFDDNGSEERIPIDETELTHDLMDVEE--L 588
E + + L+ ++ +S E G +++ L L + E L
Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVEP---SKVGQFDQV------LNLCLTEFENCYL 96
Query: 589 NGDELNAVIERQIVETLLSPPIIVRAPSQSSSINTSFNYHHRKLRGSPFYRK----LKKR 644
G++++A+ L ++ + ++ R + PF +K L +
Sbjct: 97 EGNDIHAL-----AAKL--LQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSALFRA 148
Query: 645 AIDKN--------GTGNIIQINISKRRRAF--LQDIFTT---LVDIQWRWTMLLALSYPV 691
+ N G GN F L+D++ T LV L+ S
Sbjct: 149 VGEGNAQLVAIFGGQGNT--------DDYFEELRDLYQTYHVLVGD------LIKFSAET 194
Query: 692 LKSTCPAQFKLLSPEHNWARFSRFRLHLVAASVHTSNQVAKHPNVHISRALGCSSPMSLR 751
L L+ + + L+++ + ++P+ + S P+S
Sbjct: 195 LSE-------LIRTTLDAEKVFTQGLNIL--------EWLENPSNTPDKDYLLSIPISC- 238
Query: 752 PGKIENRYGSFSEQLALSYPVLKSFACIWWLLAYTHGDVLSENQNNPQFVPCVIGV---- 807
P QLA Y V LL +T G++ S + G+
Sbjct: 239 PL-------IGVIQLA-HYVV----TA--KLLGFTPGELRSYLKG---ATGHSQGLVTAV 281
Query: 808 --------NSF------ASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIV--GTI 851
SF A ++LF I G R ++ ++ +
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFI--------GVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 852 IQAFM---TGLVFAKVARPKQRTQTLLFSRT----AVINQRD-----GH------LCLMF 893
+ + M + L +V +T + L + +++N G L L
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 894 RVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIV-V 952
R A + L ++R PF SE KL S+ FL P
Sbjct: 394 R-----------KAKAPSGLDQSRI--------PF-SERKLKF----SNRFL--PVASPF 427
Query: 953 HRIDEESPLYDMAAKKLLTEKFEIIAILEGT--------TESTGQTTQAKTSYLPSEILW 1004
H S L A+ + + + T G + L I
Sbjct: 428 H-----SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF-DGSDLRV----LSGSIS- 476
Query: 1005 GHRFEPLVRSVSKQLV-------TSSIHM--FVPNGLSKECKIGDKLGMNFECDKGFLGI 1055
E +V + + V + H+ F P G S +G N + G
Sbjct: 477 ----ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG---LGVLTHRNKD------G- 522
Query: 1056 IVSNRGQSIIHSSQVKTMSRNMYG 1079
G +I + + + YG
Sbjct: 523 ----TGVRVIVAGTLDINPDDDYG 542
Score = 74.3 bits (182), Expect = 3e-13
Identities = 91/552 (16%), Positives = 171/552 (30%), Gaps = 169/552 (30%)
Query: 1066 HSSQVKTMSRNMYGII---VPIPSTTNLFTA---WRTF------ASDSRSGGDVMSPNAI 1113
+S++ T+S +G + + +P T + F A F ++ + D P
Sbjct: 4 YSTRPLTLS---HGSLEHVLLVP-TASFFIASQLQEQFNKILPEPTEGFAADD--EPTTP 57
Query: 1114 RKLFSQSM----SEMYKKQVPQYSTLLELVRQVNLDTLANSGKLDE-----MSAEDLERL 1164
+L + + S + +V Q+ +L L L E + D+
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLC-------------LTEFENCYLEGNDI--- 101
Query: 1165 NEERHG-AIRLGTPEELYNIRRLFSVMNMHPVGYYD-LSTAGVPV---HSTA-FRSIDA- 1217
H A +L + ++ + N Y A P ++A FR++
Sbjct: 102 ----HALAAKLLQENDTTLVKTKELIKN-----YITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 1218 ----YAL-----NQSPFRVFTSLLRL-----ELIEDKVEQSDSPHEAKHTARFGEVEQRG 1263
A+ N + F L L L+ D ++ S A+ +
Sbjct: 153 NAQLVAIFGGQGNTDDY--FEELRDLYQTYHVLVGDLIKFS-----AETLSELIRTTLDA 205
Query: 1264 IALTAKGRQLYDYLLDKTRGSFKGIPDETNSKLYMENLASN-FSVFPDDLNTLRKEKLAY 1322
+ +G + ++L + P T K Y L S S P L + +
Sbjct: 206 EKVFTQGLNILEWLEN---------PSNTPDKDY---LLSIPIS-CP--LIGV----IQL 246
Query: 1323 FNYYVTDKEPYFGGPKPISL----------GGFIFVPLLCGDSSSPV------------- 1359
+Y VT K G P L + + ++ S
Sbjct: 247 AHYVVTAKL---LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 1360 ----YHCLDSCPPPQWNPALLRRSHKVCAGKNSRP----RSIRLCVIDRGLKLFPAHTFR 1411
C ++ P P++L S + G S P ++ + + +H
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS-PMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 1412 RR-----LSNG-----LSESALDLYQTDH----ISGKSHLDKNVNDFNLDNYVRAGLIGY 1457
+ L NG +S LY + S LD++ F+ R
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS----ERKLKFSN 418
Query: 1458 EGITYEDFLPVSAAGIFQSNLSTNANHHIESQSSRHDFE---NALGCSVRD-----EMKL 1509
FLPV++ F S+L A+ I +++ + V D ++++
Sbjct: 419 R------FLPVASP--FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 1510 YEDLEKKSLQDC 1521
+ + DC
Sbjct: 471 LSGSISERIVDC 482
Score = 71.2 bits (174), Expect = 3e-12
Identities = 110/678 (16%), Positives = 188/678 (27%), Gaps = 255/678 (37%)
Query: 685 LALSYPVLKSTCPAQFKLLSPEHNWARFSR----FRLHLVAASVHTSNQVAKHPNVH-IS 739
L LS+ L + LL P ++ S+ F L + + +
Sbjct: 9 LTLSHGSL------EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 740 RALG-CSSPMSLRPGKIENRYGSFSEQLALSYPVLKSFACIWWLLAYTHGDVLSENQNNP 798
+ LG SS + ++ G F + L L L F L N
Sbjct: 63 KFLGYVSSLVE------PSKVGQFDQVLNL---CLTEF----------ENCYLEGND--- 100
Query: 799 QFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTG 858
+++ A+ LL +T +I+ ++T
Sbjct: 101 --------IHALAAKLLQENDTT-----------------------LVKTKELIKNYITA 129
Query: 859 LVFAKVARP-KQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKAR 917
+ AK RP +++ + LF R + + L +F G G
Sbjct: 130 RIMAK--RPFDKKSNSALF-RAV--GEGNAQLVAIF--G---------G----------- 162
Query: 918 TTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVH--RIDEESPLYDMAAKKLLTEKFE 975
+G + + EL+ D Y + L+ I + E + A+K+ T+
Sbjct: 163 ---QGNT-DDYFEELR---DLYQTYHVLVGDLIKFSAETLSELIRT-TLDAEKVFTQGLN 214
Query: 976 IIAILEGTTESTGQTTQAKTSYLPS-EILWGHRFEPLVRSVSKQLVTSSIHMFVPNGLSK 1034
I+ LE + YL S I PL+ + QL H V
Sbjct: 215 ILEWLENP------SNTPDKDYLLSIPISC-----PLIGVI--QLA----HYVV------ 251
Query: 1035 ECKIGDKLGMN----FECDKGFLGIIVSNRGQSIIHSSQVKTMSRNMYGIIVPIPSTTNL 1090
K+ LG KG + Q ++ ++ +
Sbjct: 252 TAKL---LGFTPGELRSYLKG-----ATGHSQGLV-TAVAIAET---------------- 286
Query: 1091 FTAWRTFASDSRSGGDVMSPNAIRKLF-----SQSMSEMYKKQVPQYSTLLELVRQVNLD 1145
+W +F R AI LF + P S ++ D
Sbjct: 287 -DSWESFFVSVR--------KAITVLFFIGVRCY-------EAYPNTSLPPSILE----D 326
Query: 1146 TLAN-----------SGKLDEMSAEDLERLN----EERHGAIRL----------GTPEEL 1180
+L N S E + + + N + I L G P+ L
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 1181 Y----NIRRL------------FSVMNMHPVGYYDLSTAGVPVHS----TAFRSIDAYAL 1220
Y +R+ FS P HS A I+ +
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFS--ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 1221 NQS----------P---------FRVFTSLLRLELIE----DKV--EQSDSPHEAKHTAR 1255
+ P RV + + +++ V E + +A H
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ-FKATHILD 503
Query: 1256 FGEVEQRGIA-LTAKGRQ 1272
FG G+ LT + +
Sbjct: 504 FGPGGASGLGVLTHRNKD 521
Score = 62.8 bits (152), Expect = 9e-10
Identities = 96/559 (17%), Positives = 165/559 (29%), Gaps = 199/559 (35%)
Query: 168 DTHSLVADIVCFKTPHINHLTPSTLDIDRVQDRMVAQ---MSRHGSCVPKAVIEGPPRRE 224
D H+L A + D V+ + + + +R + P ++
Sbjct: 100 DIHALAAKL------------LQENDTTLVKTKELIKNYITARIMAKRP------FDKKS 141
Query: 225 VPILLRQTSFKALTEDIAVPGRDVGSISIFNGQ-----FF--LRGLTE---GTVTAKVLS 274
L R AV + ++IF GQ +F LR L + V +
Sbjct: 142 NSALFR-----------AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 275 SRNRREKEDRIGSDEIPVCGVQYVGDYCTLCHRHGKQANLNDLSRLQAFMTG-------- 326
S + R D V G LN + ++
Sbjct: 191 SAETLSELIRTTLDAEKV-------------FTQG----LN----ILEWLENPSNTPDKD 229
Query: 327 -LVFAKVARPK-QRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAY-LVK 383
L+ ++ P Q + TA + L F G++R S++ GA+ + LV
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKL--------LGFTPGELR--SYLKGATGHSQGLVT 279
Query: 384 ARTTAEGEVLNPFLSELKVILDAV----LQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIF 439
A AE + F ++ + + ++ E TS
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS--------------------- 318
Query: 440 LLWPTIVVHRID--EESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYL---- 493
L P+I+ ++ E P M + LT++ ++ + T Q + S L
Sbjct: 319 -LPPSILEDSLENNEGVPSP-MLSISNLTQE-QVQDYVNKTNSHLPAGKQVEIS-LVNGA 374
Query: 494 -------PSEILWGHRFEPLVRKDKPCDKPHFKSYDDLINEALLESNIQHAKSK------ 540
P + L+G +RK K L +S I ++ K
Sbjct: 375 KNLVVSGPPQSLYG--LNLTLRKAKAPSG-------------LDQSRIPFSERKLKFSNR 419
Query: 541 ---------SENTLLAQYRHKRASRAEEELFDDNGSEERIPIDETELTHDLMDVEELNGD 591
S LL + N + +IP+ T D D+ L+G
Sbjct: 420 FLPVASPFHSH--LLVPASDLINKDLVKNNVSFNAKDIQIPV---YDTFDGSDLRVLSGS 474
Query: 592 ELNAVIERQIVETLLSPP-------------IIVRAPSQSSSINTSFNYHHRKLRGSPFY 638
I +IV+ ++ P I+ P +S +
Sbjct: 475 -----ISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG---------------- 513
Query: 639 RKLKKRAIDKNGTG-NIIQ 656
L R D GTG +I
Sbjct: 514 -VLTHRNKD--GTGVRVIV 529
Score = 60.1 bits (145), Expect = 7e-09
Identities = 101/573 (17%), Positives = 161/573 (28%), Gaps = 223/573 (38%)
Query: 23 QLNLRLSFL--CIKKDLPDQVYLSGLPDSECL--ALYYFKSKYKVPILYT---HHFLCVL 75
L FL P +V + L L F++ Y L H L
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVG----QFDQVLNLCLTEFENCY----LEGNDIHALAAKL 108
Query: 76 -----------KIVPRCYLP--ISVNKIKKKLRGSPFYRKLKKRAIDK-----NGTGNII 117
K + + Y+ I + K S +R + + + G GN
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA-QLVAIFGGQGNT- 166
Query: 118 QINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIVSYDTYQTLLDTHSLVADIV 177
D F L D+ Y TY LV D++
Sbjct: 167 ------------DDYFEELRDL--------------------YQTYH------VLVGDLI 188
Query: 178 CFKTPHINHLTPSTLDIDRVQDRMVAQMSRHGSCVPKAVIEGP---PRRE----VPILLR 230
F ++ L +TLD ++V G +E P P ++ +PI
Sbjct: 189 KFSAETLSELIRTTLDAEKVF--------TQG-LNILEWLENPSNTPDKDYLLSIPI--- 236
Query: 231 QTSFK--ALTE--DIAVPGRDVGSISIFN-GQFF--LRGLT---EGTVTAKVLSSRNRRE 280
S + + V + +G F G+ L+G T +G VTA ++ + E
Sbjct: 237 --SCPLIGVIQLAHYVVTAKLLG----FTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 281 KEDRIGSDEIPV---CGVQYVGDYCTLCHRHGKQANLNDLSRLQ----------AFM--- 324
I V GV+ C+ +L S L+ + M
Sbjct: 291 SFFVSVRKAITVLFFIGVR--------CYEAYPNTSL-PPSILEDSLENNEGVPSPMLSI 341
Query: 325 TGLVFAKVARPKQRTQTLLFSRT----AVINQRD-----GH------LCLMFR---VGDM 366
+ L +V +T + L + +++N G L L R
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 367 REKSHIIGASVKA-----YLVKARTTAEGEVLNPFLSEL------KVILDAVLQSTEFSS 415
++S I + K +L + PF S L + D V + F+
Sbjct: 402 LDQSRIPFSERKLKFSNRFL---PVAS------PFHSHLLVPASDLINKDLVKNNVSFN- 451
Query: 416 TTSTYVRAGTPYQLHIDQYD----SD---------------IF---LLWPTIVV----HR 449
+ I YD SD I + W T H
Sbjct: 452 ----------AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 450 ID----EESPLYDMAAKKLLTEKFEIIAILEGT 478
+D S L LT + +GT
Sbjct: 502 LDFGPGGASGLGV------LTHR-----NKDGT 523
Score = 48.9 bits (116), Expect = 1e-05
Identities = 47/276 (17%), Positives = 85/276 (30%), Gaps = 103/276 (37%)
Query: 941 SDIFLLWPT-IVVH-------RIDEESPLYD-MAAKKLLTEKFEIIAILEGTTESTGQTT 991
DI + P + +H RI E Y M + ++ K + I + E +
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKRIRE---NYSAMIFETIVDGKLKTEKIFKEINEHS---- 1714
Query: 992 QAKTSYLPSEILWGHRFEPLVRSVSKQ--LVTSSIHMF--------VPN-----GLSKEC 1036
+ + L + Q L F +P G S
Sbjct: 1715 --------TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS--- 1763
Query: 1037 KIGDKLGMNFE-----CDKGFLGI-----IVSNRGQSIIHSSQVKTMSRNMYGIIVPIPS 1086
LG E + I +V RG ++ + + R+ YG+I
Sbjct: 1764 -----LG---EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI----- 1810
Query: 1087 TTNLFTAWRTFASDSRSGGDVMSPNAIRKLFSQSMSEMYKKQVPQYST-LLELV------ 1139
A ++P + FSQ + ++V + + L+E+V
Sbjct: 1811 ------A--------------INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1850
Query: 1140 RQV-------NLDTLANSGKLDEMSAE--DLERLNE 1166
+Q LDT+ N L+ + + D+ L +
Sbjct: 1851 QQYVAAGDLRALDTVTN--VLNFIKLQKIDIIELQK 1884
Score = 35.8 bits (82), Expect = 0.13
Identities = 45/253 (17%), Positives = 74/253 (29%), Gaps = 88/253 (34%)
Query: 456 LYDM--AAKKLLTE---------KFEIIAI-LEGTTEST----GQTTQAKTSYLPSEILW 499
LY AA+ + F I+ I + T G+ +
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR--------- 1685
Query: 500 GHRFEPLVRKDKPCDKPHFKSYDDLINEALLESNIQHAK---SKSENT---LLAQYRHKR 553
+ ++ + K + INE + K S ++ T L
Sbjct: 1686 -ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL------ 1738
Query: 554 ASRAEEELFDDNGSEERIPIDETELTHDLMDVEELNGDELNA------VIERQIVETLLS 607
+A E G IP D T H L G E A V+ +E+L+
Sbjct: 1739 MEKAAFEDLKSKGL---IPADATFAGHSL-------G-EYAALASLADVMS---IESLVE 1784
Query: 608 PPIIVRAPSQSSSINTSFNYHHRKLRGSPFYRKLKKRAI--DKNGTGN--IIQINISKRR 663
+V RG + A+ D+ G N +I IN +
Sbjct: 1785 ---VVF------------------YRG-----MTMQVAVPRDELGRSNYGMIAINPGRVA 1818
Query: 664 RAFLQDIFTTLVD 676
+F Q+ +V+
Sbjct: 1819 ASFSQEALQYVVE 1831
Score = 30.4 bits (68), Expect = 6.5
Identities = 31/241 (12%), Positives = 65/241 (26%), Gaps = 91/241 (37%)
Query: 1068 SQVKTMSRNMYGIIVPIPSTTNLFTA--WRTFASDSRSGGDVM--SPNAIRKLF----SQ 1119
SQ + M ++Y + +++ + S D++ +P + F +
Sbjct: 1626 SQEQGMGMDLYK---TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 1120 SMSEMYKKQVPQYSTLLELVRQVNLDTLANSGKLDEMSAEDLERLNEERHGAIRLGTPEE 1179
+ E Y ++ + +D + K+ + E + +
Sbjct: 1683 RIRENY----------SAMIFETIVDGKLKTEKIFKEINEHSTSYTFR--------SEKG 1724
Query: 1180 LYNIRR------------LFSVM---NMHPVGYYDLSTAGVPVHS----TAFRSIDAYAL 1220
L + + F + + P AG HS A S+ A +
Sbjct: 1725 LLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT---FAG---HSLGEYAALASL-ADVM 1777
Query: 1221 NQSPFRVFTSLLRLELIEDKVEQSDSPHEAKHTARFGEVEQRGIALT------AKGRQLY 1274
+ SL+ + V RG+ + GR Y
Sbjct: 1778 S------IESLVEV------------------------VFYRGMTMQVAVPRDELGRSNY 1807
Query: 1275 D 1275
Sbjct: 1808 G 1808
>3iuz_A Putative glyoxalase superfamily protein; struct genomics, joint
center for structural genomics, JCSG, prote structure
initiative, PSI-2; HET: MLY P6G PGE; 1.90A {Ralstonia
eutropha}
Length = 340
Score = 73.3 bits (179), Expect = 1e-13
Identities = 35/238 (14%), Positives = 65/238 (27%), Gaps = 46/238 (19%)
Query: 1109 SPNAIRKLFSQSMSEM----YKKQVPQYSTLLELVRQVNLDTLANSGKLDEMSAEDLERL 1164
A R +Q+++ + +VP + V D
Sbjct: 37 EGRATRAEIAQALNMVLFAGILDRVPTGRAYTDDVAATG-----------GXVVFD---- 81
Query: 1165 NEERHGAIR-------LGTPEELYNIRRLFSVMNMHPVGYYDLSTAGVPVHSTAFRSIDA 1217
HGA+R PE R+ + G Y L + ++ DA
Sbjct: 82 ----HGALRTVXWRDNGALPEGEAAFTRILRPLGYRLNGNYPLDRI--SMTGRSYAHADA 135
Query: 1218 YALNQSPFRVFTSLLRLELIEDK--------VEQSDSPHEAKHTARFGEVEQRGIALTAK 1269
+ + F S E D S P + ++++ G+ A
Sbjct: 136 ---PEGIAQFFVSEFHPERFSDAFREAVGRVTGNSADPLTPRAQTLLWQLDRDGVLTVAD 192
Query: 1270 GRQLYDYLLDKTRGSFKGIPDETNSKLYMEN-LASNFSVFPDDLN--TLRKEKLAYFN 1324
G +L L+ L E+ + + + N T R + + +
Sbjct: 193 GAELIGLLVPCFERQHGVPRLADYETLLRESAEMAWIATEGNAFNHATDRVDDVFGLS 250
Score = 64.0 bits (155), Expect = 1e-10
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 10/97 (10%)
Query: 156 WIVSYDTYQTLLDTHSLVADIVCFKTPHINHLTPSTLDIDRVQDRMVAQMSRHGSCVPKA 215
+ Y+TLL + +A I NH T D+ + ++ A
Sbjct: 209 GVPRLADYETLLRESAEMAWIATEG-NAFNHATDRVDDVFGLSEQQXALGRP-----MXD 262
Query: 216 VIEGPPRREVPILLRQTSFKALTEDIAVPGRDVGSIS 252
+E + QT+F+A T G ++
Sbjct: 263 XVEVSGSG----RVXQTAFRADTVRRQFIGAQGETVE 295
Score = 30.1 bits (67), Expect = 6.6
Identities = 28/176 (15%), Positives = 42/176 (23%), Gaps = 17/176 (9%)
Query: 1116 LFSQSMSEMYKKQVPQYSTLLELVRQVNLDTLANSGKLDEMSAEDLERLNEE----RHGA 1171
FS + E + + L Q L L G L +L L +HG
Sbjct: 151 RFSDAFREAVGRVTGNSADPLTPRAQTLLWQLDRDGVLTVADGAELIGLLVPCFERQHGV 210
Query: 1172 IRLGTPEELYNIRRLFSVMNMHPVGYYDLSTAGVPVH----------STAFRSIDAYALN 1221
RL E L + + + A V + D ++
Sbjct: 211 PRLADYETLLRESAEMAWIATEG---NAFNHATDRVDDVFGLSEQQXALGRPMXDXVEVS 267
Query: 1222 QSPFRVFTSLLRLELIEDKVEQSDSPHEAKHTARFGEVEQRGIALTAKGRQLYDYL 1277
S T+ + + E F E R A L
Sbjct: 268 GSGRVXQTAFRADTVRRQFIGAQGETVERDVPGSFYEFITRDRFADAPAASPRVDL 323
>3lho_A Putative hydrolase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2; HET:
PG4; 1.80A {Shewanella frigidimarina}
Length = 267
Score = 66.5 bits (162), Expect = 8e-12
Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 38/149 (25%)
Query: 1109 SPNAIRKLFSQSMSEMYKKQVPQYSTLLELVRQVNLDTLANSGKLDEMSAEDLERLNEER 1168
+ LF+ + + Y K P + + +L+ + + N
Sbjct: 2 MHTDVNALFAA-LWQDYIKMTPSAAKIHQLLG--HGAPIIN------------------D 40
Query: 1169 HGAIR--LGTPEELYNIRRLFSVMNMHPVGYYDLSTAGVPVHSTAFRSIDAYALNQSPFR 1226
H A+R L + + F+ + G Y + + F D +
Sbjct: 41 HIALRTFNIAKVNLSVLAKHFTSIGYVDSGDYKFEQK--KLIAKHFEHPDP-----KQPK 93
Query: 1227 VFTSLLRLE--------LIEDKVEQSDSP 1247
VF S L +E I ++Q D
Sbjct: 94 VFISELLVEEFSPEVQKSIHGLIDQVDIA 122
Score = 58.8 bits (142), Expect = 3e-09
Identities = 27/132 (20%), Positives = 37/132 (28%), Gaps = 23/132 (17%)
Query: 129 LQDIFTTLVDIQWRWTMLVCSMGFL--LSWIVSYDTYQTLLDTHSLVADIVC------FK 180
+Q L+D Q W V TYQ LL A +
Sbjct: 108 VQKSIHGLID-QVDIAATTADNFIYSGRHWDVDKATYQALLAESEYAAWVAALGYRANHF 166
Query: 181 TPHINHLTPSTLDIDRVQDRMVAQMSRHGSCVPKAVIEGPPRREVPILLRQTSFKALTE- 239
T IN L P I+ V + G + +LL Q+S A
Sbjct: 167 TVSINDL-PEFERIEDVNQALKQAG------FVLNSSGGEVKGSPEVLLEQSSTMADKVV 219
Query: 240 ------DIAVPG 245
D+ +P
Sbjct: 220 VNFTDGDVEIPS 231
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.7 bits (167), Expect = 1e-11
Identities = 120/744 (16%), Positives = 206/744 (27%), Gaps = 298/744 (40%)
Query: 641 LKKRAIDKNGTGNIIQI--NISKRRRAFLQDIFTTLVDIQWRWTM-----LLALSYPVLK 693
L K ID +II +S R +F TL+ Q +L ++Y L
Sbjct: 46 LSKEEID-----HIIMSKDAVSGTLR-----LFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 694 STCPAQFKLLSPEHNWARFSRFRLHLVAASVHTSNQV-AKHPNVHISR---------ALG 743
S P + + P + R L + NQV AK+ ++SR AL
Sbjct: 96 S--PIKTEQRQPSMMTRMYIEQRDRL-----YNDNQVFAKY---NVSRLQPYLKLRQAL- 144
Query: 744 CSSPMSLRPGKIENRYG-------SFSEQLALSYPVLKSFAC-IWWLLAYTHGDVLSENQ 795
+ LRP K G + + LSY V I+WL
Sbjct: 145 ----LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL------------- 187
Query: 796 NNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAF 855
+ ++ E + + Q I +
Sbjct: 188 ---------------------------NLKN--CNSPETVLEMLQKLLYQ-----IDPNW 213
Query: 856 MTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVK 915
+ + K R ++ ++ + CL+ + +++ A+ +
Sbjct: 214 TSRSDHSS--NIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQNAKAW-----NAFNLS 265
Query: 916 AR---TTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTE 972
+ TT +V + FLS T + L K LL +
Sbjct: 266 CKILLTTRFKQVTD-FLSAAT---------------TTHISLDHHSMTLTPDEVKSLLLK 309
Query: 973 KFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVRSVSKQLVTSSIHMFVPNGL 1032
+ + LP E+L + P S+ +
Sbjct: 310 YLDC-----------------RPQDLPREVLTTN---PRRLSI----------------I 333
Query: 1033 SKECKIGDKLGMNFE---CDKGFLGIIVSNRGQSIIHSSQVKTMS----RNMY---GII- 1081
++ + G N++ CDK L +II SS + + R M+ +
Sbjct: 334 AESIRDGLATWDNWKHVNCDK--L--------TTIIESS-LNVLEPAEYRKMFDRLSVFP 382
Query: 1082 --VPIPSTTNLFTAWRTFASDSRSGGDVMSPNAIRKLFSQSMSEMYKKQVPQYSTLLELV 1139
IP+ L W F V++ KL S+ E K+ ++ +
Sbjct: 383 PSAHIPTIL-LSLIW--FDVIKSDVMVVVN-----KLHKYSLVE--KQPKESTISIPSI- 431
Query: 1140 RQVNLDTLANSGKLDEMSAEDLERLNEERHGAIRLGTPEELYNIRRLFSVMNMHPV---G 1196
L+ + H +I + YNI + F ++ P
Sbjct: 432 ---YLELKVKLENEYAL------------HRSIV-----DHYNIPKTFDSDDLIPPYLDQ 471
Query: 1197 Y------YDLSTAGVPVHSTAFRSIDAYALNQSPFRVFTSLLRLELIEDKVEQSDSPHEA 1250
Y + L P T FR + + L+ FR F +E K+
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMV--F-LD---FR-F--------LEQKI--------- 507
Query: 1251 KHTARFGEVEQRGIALTAKGRQLYDYLLDKTRGSFKGIPDETNSKLYMENLASNFSVFPD 1310
+H A A G L +
Sbjct: 508 RHD---------STAWNASGSIL------------------------------------N 522
Query: 1311 DLNTLRKEKLAYFNYYVTDKEPYF 1334
L L+ Y Y + D +P +
Sbjct: 523 TLQQLKF----YKPY-ICDNDPKY 541
Score = 61.0 bits (147), Expect = 3e-09
Identities = 94/633 (14%), Positives = 167/633 (26%), Gaps = 229/633 (36%)
Query: 1040 DKLGMNFECD--KGFLGIIVSNRG-QSIIHSSQVKTMSRNMYGIIVPIPSTT-------- 1088
D NF+C + I+S II S + + ++ ++
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 1089 ---N---LFTAWRTFASDSRSGGDVMSPNAIRKLFSQSMSEMY-------KKQVPQYSTL 1135
N L + +T P+ + +++ + +Y K V +
Sbjct: 87 LRINYKFLMSPIKTEQRQ---------PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 1136 LELVRQ----------VNLDTLANSGK-------------LDEM-------------SAE 1159
L+L RQ V +D + SGK +M S E
Sbjct: 138 LKL-RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 1160 D-LERLN-------------EERHGAIRLGTPEELYNIRRLFS-------------VMNM 1192
LE L + I+L +RRL V N
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 1193 HPVGYYDLS-----TAGVPVHSTAFRSIDAYALNQSPFRVFTSLLRLELIEDKVEQ---- 1243
++LS T T F+ + + + + + L D+V+
Sbjct: 257 KAWNAFNLSCKILLT-------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 1244 ------SDSPHEAK-----HTARFGEVEQRGIALTAKGRQL-YDYLLDKTRGSFKGIPDE 1291
D P E + E + G+A + + D L S +
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 1292 TNSKLYMENLASNFSVFPDDLNTLRKEKLAYFNYYVTDKEPYFGGPKPISLGGFIFVPLL 1351
K++ SVFP + + L+ + V + + + L+
Sbjct: 370 EYRKMFDR-----LSVFPPSAH-IPTILLSLIWFDVIKSDV------MVVVNKLHKYSLV 417
Query: 1352 CGDSSSPVYHC----LDSCPPPQWNPALLRRSHKVCAGKNSRPRSIRLCVIDRGLKLFPA 1407
L+ + AL H+ ++D
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYAL----HRS--------------IVDH------- 452
Query: 1408 HTFRRRL-SNGLSESALDLYQTDHISGKSHLDKNVN------------DFN-LDNYVRAG 1453
+ + S+ L LD Y HI HL + DF L+ +R
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIG--HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 1454 ----------------LIGYEG-IT------------YEDFLPVSAAGIFQSNLSTNANH 1484
L Y+ I DFLP
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP----------------- 553
Query: 1485 HIESQSSRHDFENALGCSVRDEMK-LYEDLEKK 1516
IE + + L ++ E + ++E+ K+
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 50.6 bits (120), Expect = 5e-06
Identities = 114/685 (16%), Positives = 193/685 (28%), Gaps = 228/685 (33%)
Query: 367 REKSHIIGAS---VKAYLV------KARTTAE---GEVLNP---FL-SELKVILDAVLQS 410
E HII + + K + EVL FL S +K +
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT------EQ 102
Query: 411 TEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFE 470
+ S T Y+ Q D+ +F V R+ L + LL +
Sbjct: 103 RQPSMMTRMYI-----EQRDRLYNDNQVF---AKYNVSRLQPYLKL----RQALLELRPA 150
Query: 471 IIAILEGTTESTGQTTQAK--------TSYLPSEILW---GHRFEPLVRKDKPCDKPHFK 519
+++G +G+T A + +I W + C+ P
Sbjct: 151 KNVLIDGVL-GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN-----------CNSP--- 195
Query: 520 SYDDLINEALLESNIQHAKSKSENTLLAQYRHKRASRAEEELFDDNGSEERIPIDETELT 579
E +LE +Q LL Q SR+ D+ S ++ I +
Sbjct: 196 -------ETVLE-MLQ--------KLLYQIDPNWTSRS------DHSSNIKLRIHSIQ-- 231
Query: 580 HDLMDVEELNGDELNAVI-ERQIVETLLSPPIIVRAPSQSSSINTSFNYHHRKLRGSPFY 638
EL ++ + LL ++ + + N +FN + L
Sbjct: 232 -----------AELRRLLKSKPYENCLL----VLLNVQNAKAWN-AFNLSCKIL------ 269
Query: 639 RKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTM-LLALSYPVLKSTCP 697
L R K ++ + L TL + LL P
Sbjct: 270 --LTTR--FKQ---VTDFLSAATTTHISLDHHSMTLTPDE---VKSLLLKYLDCRPQDLP 319
Query: 698 AQFKLLSPEHNWARFSRFRLHLVAASVH----TSNQVAKHPNV-HISRALGCSSPMSLRP 752
+ +P RL ++A S+ T + KH N ++ + SS L P
Sbjct: 320 REVLTTNP---------RRLSIIAESIRDGLATWDNW-KHVNCDKLTTIIE-SSLNVLEP 368
Query: 753 GKIENRYGS---FSEQLALSYPVLKSFACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNS 809
+ + F + +L + W DV+ + V VN
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILL----SLIW------FDVIKSD---VMVV-----VNK 410
Query: 810 FAS-SLLFSIETQHTIGYGS--RSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVAR 866
SL+ + TI S + L +SIV
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIV-------------DHYNI 455
Query: 867 PKQRTQTLLFSRTAVINQRDG--------HLCLMFRVGDMREKSHIIGASVKAYL----- 913
PK S + D HL + M + +L
Sbjct: 456 PKT-----FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-------FLDFRFL 503
Query: 914 -VKARTT-----AEGEVLNPFLSELKL---HI-------DQYDSDI--FLLWPTIVVHR- 954
K R A G +LN L +LK +I ++ + I FL +
Sbjct: 504 EQKIRHDSTAWNASGSILN-TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 955 ----------IDEESPLYDMAAKKL 969
+ E+ +++ A K++
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 50.2 bits (119), Expect = 6e-06
Identities = 56/441 (12%), Positives = 107/441 (24%), Gaps = 147/441 (33%)
Query: 1190 MNMHPVGYYDLSTAGVPVHSTAF-RSIDAYALNQSPFRVFTSLLRLELIEDKVEQSDSPH 1248
H Y D+ + V AF + D + P + + E I+ +
Sbjct: 11 TGEHQYQYKDI----LSVFEDAFVDNFDCKDVQDMPKSILSK----EEIDHIIMS---KD 59
Query: 1249 EAKHTAR-FGEVEQRGIALTAK--GRQL---YDYLLDKTRGSFKGIPDETNSKLYME--- 1299
T R F + + + K L Y +L+ + + P +++Y+E
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-P-SMMTRMYIEQRD 117
Query: 1300 NLASNFSVFPDDLNTLRKEKLAYFNYYVT--DKEPY---FGGPKPISLGGF---IFVPLL 1351
L ++ VF N R + + G + G +
Sbjct: 118 RLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDG------VLGSGKTWVALDV 170
Query: 1352 CGDSS------SPVY-------HCLDSCPPPQWNPALLRRSHKVCAGKNSRPRSIRL--- 1395
C ++ + ++ LL + ++ +I+L
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 1396 CVIDRGLKLFPAHTFRRRLSNGLSESALDLYQTDHISGKSHL--------------DKNV 1441
+ +L + + L L L ++ K V
Sbjct: 229 SIQAELRRLLKSKPYENCL--------LVL---LNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 1442 NDFNLDNYVR---------AGLIGYE---------GITYEDFLPVSAAGIFQSNLSTNA- 1482
DF L L E +D LP LS A
Sbjct: 278 TDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVLTTNPRRLSIIAE 335
Query: 1483 ---NHHIESQSSRH----DFENALGCSVR----DEMK-LYEDL----------------- 1513
+ + +H + S+ E + +++ L
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 1514 ----------------EKKSL 1518
K SL
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSL 416
Score = 40.6 bits (94), Expect = 0.005
Identities = 73/480 (15%), Positives = 142/480 (29%), Gaps = 159/480 (33%)
Query: 23 QLNLRLSFLCIKKDLP------DQVYLSGLPDSECLALYYFKSKYKVPILYTHHFLCVLK 76
+ L L K V +++ + K IL T F V
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQ-----NAKAWNAFNLSCK----ILLTTRFKQVTD 279
Query: 77 IV-PRCYLPISVNKIK-------------KKLRGSPFYRKLKKRAIDKNGTGNIIQINIS 122
+ IS++ K L P L + + T N +++I
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ--DLPREVL----TTNPRRLSII 333
Query: 123 KRRRAFLQDIFTTLVDIQW-RWTMLVCSMGFLLSWIVSYDTYQTLLDTHSLVADIVCFKT 181
++D T W W V+ D T++++ SL
Sbjct: 334 A---ESIRDGLAT-----WDNWKH------------VNCDKLTTIIES-SL--------- 363
Query: 182 PHINHLTPSTLDIDRVQDRMVAQMS--RHGSCVPKAVIE----GPPRREVPILLRQTSFK 235
N L P+ R +M ++S + +P ++ + +V +++ +
Sbjct: 364 ---NVLEPAEY---R---KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 236 ALTEDIAVPGRDV--GSISIFNGQFFLRGLTEGTVT--AKVLSSRNRREKEDRIGSDEIP 291
+L E + +ISI + L+ E ++ N + D D IP
Sbjct: 415 SLVE------KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD--SDDLIP 466
Query: 292 VCGVQYVGDYCTLCHRHGKQANLNDLSRL--QAFMTGLVF--AKVARPKQRTQTLLFSRT 347
QY Y + H H K + L F+ F K+ + T +
Sbjct: 467 PYLDQYF--YSHIGH-HLKNIEHPERMTLFRMVFLD-FRFLEQKI----RHDSTAWNASG 518
Query: 348 AVINQRDGHLCLMFRVGDMRE-KSHIIGASVKAYLVKARTTAEGEVLNPFLSELKVILDA 406
+++N + ++ K +I P L ++A
Sbjct: 519 SILNT----------LQQLKFYKPYICDND------------------PKYERL---VNA 547
Query: 407 VLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRI--DEESPLYDMAAKKL 464
+L +F L +Y +D+ + E+ +++ A K++
Sbjct: 548 IL---DFLPKIEE--------NLICSKY-TDL--------LRIALMAEDEAIFEEAHKQV 587
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 32.8 bits (75), Expect = 0.84
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 625 FNYHHRKLRGSPFYRKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDI 677
FN H P Y + + + G + + K R A DI T + D
Sbjct: 121 FNRRHI-----PLYNQHLS-ELAQQECGALRSLRWEKHRHALPGDIRTFVFDD 167
Score = 31.6 bits (72), Expect = 2.0
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 98 PFYRKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDI 139
P Y + + + G + + K R A DI T + D
Sbjct: 127 PLYNQHLS-ELAQQECGALRSLRWEKHRHALPGDIRTFVFDD 167
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 1.3
Identities = 11/88 (12%), Positives = 22/88 (25%), Gaps = 28/88 (31%)
Query: 495 SEIL--WGHRFEP-LVRKDKPCDKPHFKSYDDLINEALLESNIQHAKSKSENTLLAQYRH 551
E + W L D ++ + + + AK E +
Sbjct: 84 PESIRKWREEQRKRLQELDA-------------ASKVMEQEWREKAKKDLEE----WNQR 126
Query: 552 --------KRASRAEEELFDDNGSEERI 571
K +R ++ F + I
Sbjct: 127 QSEQVEKNKINNRIADKAFYQQPDADII 154
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 29.7 bits (67), Expect = 2.3
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 808 NSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARP 867
S+ ++ +S+ET T+GYG R TE + G + A +T + R
Sbjct: 39 ISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQV--MKAGIEVFALVTAALATDFVRR 96
Query: 868 KQRTQ 872
++ +
Sbjct: 97 EEERR 101
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 29.2 bits (66), Expect = 2.3
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 809 SFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKV 864
S+ SL ++ T T+GYG S T P ++ C ++G A + +
Sbjct: 28 SWTVSLYWTFVTIATVGYGDYSPHT--PLGMYFTCTLIVLGIGTFAVAVERLLEFL 81
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics;
NMR {Thermotoga maritima} SCOP: d.68.3.3
Length = 98
Score = 28.9 bits (65), Expect = 3.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 559 EELFDDNGSEERIPIDETELTHDLMDVEELNGDELNAVIERQ 600
E D S+ERIP +L H+++++EE+ E I+ +
Sbjct: 57 EVWIDYPMSKERIPETVKKLGHEVLEIEEVGPSEWKIYIKVK 98
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 29.5 bits (66), Expect = 4.0
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 8/99 (8%)
Query: 809 SFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARP- 867
+L FS+ T T+G G+ S T + +G + + V P
Sbjct: 52 RPLDALYFSVVTLTTVGDGNFSPQT--DFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPS 109
Query: 868 --KQRTQTLLFSRTAVINQRD---GHLCLMFRVGDMREK 901
R + R V+ + + L R G + +
Sbjct: 110 ILSNRKKETDAYRLEVMEKLEAIEKKLAEHSRQGSLVPR 148
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 30.8 bits (69), Expect = 4.3
Identities = 25/149 (16%), Positives = 40/149 (26%), Gaps = 19/149 (12%)
Query: 533 NIQHAKSKSENTLLAQYRHKRASRAEEELFDDNGSE-----ERIPIDETELTHDLMDVEE 587
Q K L ++ + E + E I E D+
Sbjct: 177 AAQPTIRKDGLRLWGSWKRGKDESDLPEKRLLSPLEVHTIFTHIS-SE--------DLAH 227
Query: 588 LNGDELNAVIERQIVETLLSPPIIVRAPSQSSSINTSFNYHHRKLRGSPFYRKLKKRAID 647
L +E A + I+ L PP VR + + KL +R
Sbjct: 228 LGLNEQYARPDWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQ 287
Query: 648 KNGTGNIIQINISKRRRAFLQDIFTTLVD 676
+ +I+ LQ T +D
Sbjct: 288 EGAPAHIVS-----EYEQLLQFHVATYMD 311
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 28.8 bits (65), Expect = 4.4
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 230 RQTSFKALTEDIAVPGRDVGSISIFNGQFFLR--GLT 264
R + I++ GR ++ + F LR L
Sbjct: 38 RTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLR 74
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.0 bits (70), Expect = 4.5
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 506 LVR--KDKPCDKPHFKSYDDLINEALLESNIQHAKSKSENTLLAQYRHK--RASRAEEEL 561
+ +P+ D E + + ++ K+K E ++L H R E EL
Sbjct: 860 FISYHNGNLKGRPYTGWVDSKTKEPVDDKDV---KAKYETSILE---HSGIR--LIEPEL 911
Query: 562 FDDNGSEERIPIDETELTHDLMDVE 586
F+ E++ I E + DL E
Sbjct: 912 FNGYNPEKKEMIQEVIVEEDLEPFE 936
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A
{Homo sapiens}
Length = 316
Score = 30.3 bits (69), Expect = 4.8
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 842 MCVQSIVGTIIQAFMTGLVFAKVA 865
+ V + G+ + GL A+V
Sbjct: 201 LIVNMVQGSFMATIAEGLTLAQVT 224
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine
phosphatase, hydrolase, protein-ligand complex; HET: NLA;
1.50A {Homo sapiens} PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A*
1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Length = 157
Score = 29.0 bits (66), Expect = 6.2
Identities = 24/138 (17%), Positives = 39/138 (28%), Gaps = 52/138 (37%)
Query: 1227 VFTSLLRLELIEDKVEQSDS-----------PHE-AKHTARFGEVEQRGIALTAKGRQL- 1273
VF L+ + I + DS P + + + GI ++ RQ+
Sbjct: 25 VFRKLVTDQNISENWR-VDSAATSGYEIGNPPDYRGQSCMK-----RHGIPMSHVARQIT 78
Query: 1274 ------YDYLL--DKTRGSFKGIPDETNSKLYMENLASNFSVFPDDLNTLRKEKLAYFNY 1325
+DY+L D+ NL K K+
Sbjct: 79 KEDFATFDYILCMDE------------------SNLRDLNRKSNQVKTC--KAKIELLGS 118
Query: 1326 YVTDKE-----PYFGGPK 1338
Y K+ PY+G
Sbjct: 119 YDPQKQLIIEDPYYGNDS 136
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate
dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A
{Arabidopsis thaliana}
Length = 310
Score = 29.9 bits (68), Expect = 6.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 842 MCVQSIVGTIIQAFMTGLVFAKVA 865
+ V I+G+++ AF GLV A +
Sbjct: 192 LIVNMIMGSMMNAFSEGLVLADKS 215
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase,
glycosidase, ISO-amylase glycosyl hydrolase, glycogen
metabolism; 2.25A {Escherichia coli k-12}
Length = 657
Score = 30.3 bits (69), Expect = 7.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 554 ASRAEEELFDDNGSEERIPIDE 575
A R E +FD NG E R +
Sbjct: 30 AERVELCVFDANGQEHRYDLPG 51
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 27.9 bits (62), Expect = 8.8
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 809 SFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPK 868
+L FS+ T T+GYG S T + +G + + V P
Sbjct: 32 RPIDALYFSVVTLTTVGYGDFSPQT--DFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 89
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A
{Geobacter sulfurreducens}
Length = 287
Score = 29.4 bits (67), Expect = 9.0
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 842 MCVQSIVGTIIQAFMTGLVFAKVA 865
+ V I+G ++ A G+ +
Sbjct: 172 LVVNMIMGQMMTALGEGMALGRNC 195
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 27.9 bits (62), Expect = 9.7
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 809 SFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPK 868
+L FS+ T T+G G+ S T + +G + + V P
Sbjct: 49 RPIDALYFSVVTLTTVGAGNFSPQT--DFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 106
Query: 869 Q 869
Sbjct: 107 I 107
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.403
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 23,114,123
Number of extensions: 1420749
Number of successful extensions: 2536
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2457
Number of HSP's successfully gapped: 78
Length of query: 1527
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1421
Effective length of database: 3,742,167
Effective search space: 5317619307
Effective search space used: 5317619307
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (28.8 bits)