RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4010
(1527 letters)
>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 202
Score = 186 bits (475), Expect = 2e-54
Identities = 67/148 (45%), Positives = 96/148 (64%), Gaps = 1/148 (0%)
Query: 866 RPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVL 925
+R +TL+FS AVI+ RDG L LMFRVG++R SH++ A ++ L+K+R T EGE L
Sbjct: 18 LGSERAETLMFSEHAVISMRDGKLTLMFRVGNLR-NSHMVSAQIRCKLLKSRQTPEGEFL 76
Query: 926 NPFLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTE 985
EL + +FL+ P + H ID +SP YD++ + + TE+FE++ ILEG E
Sbjct: 77 PLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVE 136
Query: 986 STGQTTQAKTSYLPSEILWGHRFEPLVR 1013
+TG T QA+TSY E+LWGHRF P++
Sbjct: 137 TTGMTCQARTSYTEDEVLWGHRFFPVIS 164
Score = 175 bits (444), Expect = 2e-50
Identities = 69/192 (35%), Positives = 102/192 (53%), Gaps = 28/192 (14%)
Query: 334 RPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVL 393
+R +TL+FS AVI+ RDG L LMFRVG++R SH++ A ++ L+K+R T EGE L
Sbjct: 18 LGSERAETLMFSEHAVISMRDGKLTLMFRVGNLR-NSHMVSAQIRCKLLKSRQTPEGEFL 76
Query: 394 NPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEE 453
EL V + +FL+ P + H ID +
Sbjct: 77 PLDQLELDV----------------GFSTGADQ-----------LFLVSPLTICHVIDAK 109
Query: 454 SPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVRKDKPC 513
SP YD++ + + TE+FE++ ILEG E+TG T QA+TSY E+LWGHRF P++ ++
Sbjct: 110 SPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLEEGF 169
Query: 514 DKPHFKSYDDLI 525
K + +
Sbjct: 170 FKVDYSQFHATF 181
>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Length = 161
Score = 173 bits (440), Expect = 2e-50
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 5/143 (3%)
Query: 871 TQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLS 930
T +LFS VI+ +G LM R+ ++R II A V LV++ + EG V
Sbjct: 1 TAGVLFSSRMVISDFEGKPTLMMRLANLR-IEQIIEADVHLVLVRSEISQEGMVF-RRFH 58
Query: 931 ELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQT 990
+L L V+H ID SP+Y + L E + + G E+ Q
Sbjct: 59 DLTL---TRSRSPIFSLSWTVMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQN 115
Query: 991 TQAKTSYLPSEILWGHRFEPLVR 1013
A+ +Y EI+WG F +
Sbjct: 116 VHARHAYSCDEIIWGGHFVDVFT 138
Score = 165 bits (419), Expect = 2e-47
Identities = 41/173 (23%), Positives = 63/173 (36%), Gaps = 32/173 (18%)
Query: 339 TQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLS 398
T +LFS VI+ +G LM R+ ++R II A V LV++ + EG V F
Sbjct: 1 TAGVLFSSRMVISDFEGKPTLMMRLANLR-IEQIIEADVHLVLVRSEISQEGMVFRRF-- 57
Query: 399 ELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESPLYD 458
+ L + + V+H ID SP+Y
Sbjct: 58 ----------------------------HDLTLTR-SRSPIFSLSWTVMHPIDHHSPIYG 88
Query: 459 MAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVRKDK 511
+ L E + + G E+ Q A+ +Y EI+WG F +
Sbjct: 89 ETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGGHFVDVFTTLP 141
>d1p7ba1 b.1.18.16 (A:152-309) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 158
Score = 171 bits (434), Expect = 1e-49
Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 7/161 (4%)
Query: 871 TQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLS 930
++F+R A++ +G + LM R + R ++ I A K L++ ++EG L +
Sbjct: 2 RAKIMFARHAIVRPFNGRMTLMVRAANAR-QNVIAEARAKMRLMRREHSSEGYSL-MKIH 59
Query: 931 ELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQT 990
+LKL + L ++H IDE SPL+ + L + ++ ++EG+ E+T Q
Sbjct: 60 DLKL---VRNEHPIFLLGWNMMHVIDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQV 116
Query: 991 TQAKTSYLPSEILWGHRFEPLVRSVSKQLVT--SSIHMFVP 1029
QA+ ++ +I W HR+ L+ V + + P
Sbjct: 117 MQARHAWEHDDIRWHHRYVDLMSDVDGMTHIDYTRFNDTEP 157
Score = 162 bits (411), Expect = 1e-46
Identities = 39/187 (20%), Positives = 78/187 (41%), Gaps = 32/187 (17%)
Query: 339 TQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLS 398
++F+R A++ +G + LM R + R ++ I A K L++ ++EG L +
Sbjct: 2 RAKIMFARHAIVRPFNGRMTLMVRAANAR-QNVIAEARAKMRLMRREHSSEGYSL-MKIH 59
Query: 399 ELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESPLYD 458
+LK++ + L ++H IDE SPL+
Sbjct: 60 DLKLV------------------------------RNEHPIFLLGWNMMHVIDESSPLFG 89
Query: 459 MAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVRKDKPCDKPHF 518
+ L + ++ ++EG+ E+T Q QA+ ++ +I W HR+ L+ +
Sbjct: 90 ETPESLAEGRAMLLVMIEGSDETTAQVMQARHAWEHDDIRWHHRYVDLMSDVDGMTHIDY 149
Query: 519 KSYDDLI 525
++D
Sbjct: 150 TRFNDTE 156
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 56.1 bits (135), Expect = 6e-10
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 762 FSEQLALSYPVLKSFACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQ 821
+ + L +S+PV + +L+ + + SF + FS++T
Sbjct: 16 YHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVI---ENARPGSFTDAFFFSVQTM 72
Query: 822 HTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARP 867
TIGYG P A L+ ++++ G + A L++A+ RP
Sbjct: 73 ATIGYGKLIPI--GPLANTLVTLEALCGMLGLAVAASLIYARFTRP 116
Score = 43.0 bits (101), Expect = 2e-05
Identities = 9/48 (18%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 116 IIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIVSYDTY 163
I ++ + KR +L D + L+ + W + + + +L++ + Y
Sbjct: 1 ITRLGLEKRG--WLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAY 46
Score = 35.7 bits (82), Expect = 0.009
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 654 IIQINISKRRRAFLQDIFTTLVDIQWRWTMLLAL 687
I ++ + KR +L D + L+ + W + L
Sbjct: 1 ITRLGLEKRG--WLDDHYHDLLTVSWPVFITLIT 32
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 50.8 bits (121), Expect = 4e-08
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 17/91 (18%)
Query: 776 FACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTEC 835
FA ++ L + F + FS+ET T+GY +
Sbjct: 43 FALLYQLGDAPIAN---------------QSPPGFVGAFFFSVETLATVGY--GDMHPQT 85
Query: 836 PEAIWLMCVQSIVGTIIQAFMTGLVFAKVAR 866
A + ++ VG A TGLVFA+ AR
Sbjct: 86 VYAHAIATLEIFVGMSGIALSTGLVFARFAR 116
Score = 37.3 bits (86), Expect = 0.002
Identities = 3/33 (9%), Positives = 13/33 (39%)
Query: 128 FLQDIFTTLVDIQWRWTMLVCSMGFLLSWIVSY 160
+D++ + + W + F+++ +
Sbjct: 12 VWRDLYYWALKVSWPVFFASLAALFVVNNTLFA 44
Score = 31.1 bits (70), Expect = 0.32
Identities = 3/27 (11%), Positives = 10/27 (37%)
Query: 666 FLQDIFTTLVDIQWRWTMLLALSYPVL 692
+D++ + + W + V+
Sbjct: 12 VWRDLYYWALKVSWPVFFASLAALFVV 38
>d1jdqa_ d.68.3.3 (A:) Hypothetical protein TM0983 {Thermotoga
maritima [TaxId: 2336]}
Length = 98
Score = 29.8 bits (67), Expect = 0.66
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 559 EELFDDNGSEERIPIDETELTHDLMDVEELNGDELNAVIERQ 600
E D S+ERIP +L H+++++EE+ E I+ +
Sbjct: 57 EVWIDYPMSKERIPETVKKLGHEVLEIEEVGPSEWKIYIKVK 98
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 29.3 bits (66), Expect = 0.70
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 809 SFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLV 860
S+ SL ++ T T+GYG S +T P ++ ++G A +
Sbjct: 27 SWTVSLYWTFVTIATVGYGDYSPST--PLGMYFTVTLIVLGIGTFAVAVERL 76
>d1vfia1 g.84.1.1 (A:4-95) Vanadium-binding protein 2, vanabin 2
{Vanadium-rich ascidian (Ascidia sydneiensis samea)
[TaxId: 79730]}
Length = 92
Score = 28.6 bits (63), Expect = 1.7
Identities = 7/43 (16%), Positives = 11/43 (25%)
Query: 1347 FVPLLCGDSSSPVYHCLDSCPPPQWNPALLRRSHKVCAGKNSR 1389
F P+ C + L +C K C +
Sbjct: 1 FAPVDCKGQCTTPCEPLTACKEKCAESCETSADKKTCRRNCKK 43
>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 270
Score = 28.7 bits (64), Expect = 4.5
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 1269 KGRQLYDYLLDKTRGSFKGIPDETNSKLYMENLASNFSVFPDDLNTLRKEKLAYFNYYVT 1328
G ++ + ++D + S + M+N+ + PD L L+ Y YY
Sbjct: 40 DGVEVTEKVIDL-------VAHPDRSGVTMKNIV-DLGWEPDFLKGLKVLPCPYHRYYFQ 91
Query: 1329 DKE 1331
+
Sbjct: 92 TDK 94
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 426
Score = 28.9 bits (64), Expect = 5.3
Identities = 25/126 (19%), Positives = 34/126 (26%), Gaps = 25/126 (19%)
Query: 1357 SPVYHCLDSCPPPQWNPALLRRSHKVCAGKNSRPRSIRLCVIDRGLKLFPAHTFRRRLSN 1416
+ C PPQ N +C + PR C+ + +P
Sbjct: 186 TACIECTLELYPPQVN-------FPMCTIAS-MPRLPEHCIEYVRMLQWPKEQPFGEGVP 237
Query: 1417 GLSESALDLYQTDHISGKSHLDKNVNDFNLDNYVRAGLIGYEGITYEDFLPVSAAGIFQS 1476
LD +HI RA G+TY V I +
Sbjct: 238 ------LDGDDPEHIQWIFQKSLE----------RASQYNIRGVTYRLTQGV-VKRIIPA 280
Query: 1477 NLSTNA 1482
STNA
Sbjct: 281 VASTNA 286
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase
(acylating) {Pseudomonas sp. [TaxId: 306]}
Length = 157
Score = 27.7 bits (61), Expect = 6.9
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 3/77 (3%)
Query: 112 GTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIVSYDTYQTLLDTHS 171
G+GNI + K R +V I + + +Y + L+
Sbjct: 11 GSGNIGTDLMIKVLRNAKYLEMGAMVGI--DAASDGLARAQRMGVTTTYAGVEGLIKLPE 68
Query: 172 LV-ADIVCFKTPHINHL 187
D V T H+
Sbjct: 69 FADIDFVFDATSASAHV 85
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.403
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,613,817
Number of extensions: 268260
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 22
Length of query: 1527
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1430
Effective length of database: 1,075,786
Effective search space: 1538373980
Effective search space used: 1538373980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.2 bits)