Query psy4013
Match_columns 69
No_of_seqs 145 out of 1227
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 23:11:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00135 COesterase: Carboxyle 99.8 1.2E-20 2.6E-25 129.7 4.9 62 5-66 181-244 (535)
2 COG2272 PnbA Carboxylesterase 99.7 8.7E-18 1.9E-22 117.6 5.1 65 3-67 151-217 (491)
3 KOG4389|consensus 99.7 6.1E-18 1.3E-22 118.8 4.1 67 2-68 188-256 (601)
4 cd00312 Esterase_lipase Estera 99.7 1.8E-17 3.9E-22 114.6 5.8 65 3-67 147-213 (493)
5 KOG1516|consensus 99.7 1.7E-17 3.6E-22 116.1 4.8 64 3-66 166-231 (545)
6 PF07859 Abhydrolase_3: alpha/ 99.4 2E-13 4.4E-18 84.9 3.7 65 5-69 44-112 (211)
7 COG0657 Aes Esterase/lipase [L 99.4 5.8E-13 1.2E-17 87.9 5.0 63 7-69 127-193 (312)
8 PRK10162 acetyl esterase; Prov 99.2 3.8E-11 8.3E-16 80.0 6.0 61 8-68 130-196 (318)
9 PF00326 Peptidase_S9: Prolyl 99.0 4.4E-10 9.6E-15 70.3 4.6 59 8-69 43-101 (213)
10 KOG1515|consensus 99.0 1.2E-09 2.6E-14 74.3 5.2 62 7-68 140-208 (336)
11 TIGR01840 esterase_phb esteras 98.5 3.1E-07 6.8E-12 57.8 6.1 55 10-67 76-130 (212)
12 PF10340 DUF2424: Protein of u 98.5 3.8E-07 8.3E-12 63.0 6.6 57 8-69 176-237 (374)
13 PF02230 Abhydrolase_2: Phosph 98.5 7E-07 1.5E-11 56.4 6.6 57 11-67 81-140 (216)
14 COG0400 Predicted esterase [Ge 98.4 1.1E-06 2.3E-11 56.5 5.9 55 13-67 80-134 (207)
15 PRK11460 putative hydrolase; P 98.3 3.9E-06 8.5E-11 53.9 6.5 50 18-67 89-138 (232)
16 PF10503 Esterase_phd: Esteras 98.2 3.9E-06 8.5E-11 54.3 5.3 47 20-66 85-131 (220)
17 TIGR02821 fghA_ester_D S-formy 98.2 9.1E-06 2E-10 53.1 6.5 42 27-68 133-174 (275)
18 PRK10115 protease 2; Provision 98.1 7.4E-06 1.6E-10 60.0 5.4 59 8-69 503-561 (686)
19 PF12695 Abhydrolase_5: Alpha/ 98.1 1.7E-05 3.7E-10 46.0 5.8 51 11-66 44-94 (145)
20 PRK13604 luxD acyl transferase 98.0 2.5E-05 5.4E-10 52.9 6.4 54 7-68 89-142 (307)
21 PLN02442 S-formylglutathione h 98.0 2.9E-05 6.4E-10 51.1 5.8 50 17-68 130-179 (283)
22 PF08538 DUF1749: Protein of u 97.9 2.5E-05 5.3E-10 52.9 5.1 55 10-67 87-148 (303)
23 PLN00021 chlorophyllase 97.9 4.5E-05 9.7E-10 51.4 5.8 58 8-65 97-164 (313)
24 KOG4627|consensus 97.9 1.3E-05 2.8E-10 52.5 3.0 56 10-69 118-174 (270)
25 PF12740 Chlorophyllase2: Chlo 97.9 5.3E-05 1.1E-09 50.3 5.7 59 7-65 61-129 (259)
26 COG1506 DAP2 Dipeptidyl aminop 97.8 4.3E-05 9.3E-10 55.3 5.5 58 6-67 450-507 (620)
27 COG3509 LpqC Poly(3-hydroxybut 97.8 5.5E-05 1.2E-09 51.2 5.6 58 9-66 121-178 (312)
28 PRK10566 esterase; Provisional 97.8 6.4E-05 1.4E-09 47.6 5.7 43 10-55 88-130 (249)
29 KOG2100|consensus 97.8 3.8E-05 8.1E-10 57.1 4.9 58 9-69 588-646 (755)
30 PLN02298 hydrolase, alpha/beta 97.8 9.1E-05 2E-09 49.0 6.2 55 10-67 115-169 (330)
31 TIGR03695 menH_SHCHC 2-succiny 97.8 0.00017 3.6E-09 43.9 6.6 55 10-66 49-104 (251)
32 PF00756 Esterase: Putative es 97.7 4.2E-05 9.2E-10 48.6 3.8 50 16-68 102-151 (251)
33 TIGR03101 hydr2_PEP hydrolase, 97.7 0.00016 3.5E-09 47.9 6.3 52 10-67 83-134 (266)
34 cd00707 Pancreat_lipase_like P 97.7 0.00013 2.7E-09 48.2 5.3 46 19-64 99-144 (275)
35 PHA02857 monoglyceride lipase; 97.6 0.00032 7E-09 44.9 6.4 53 10-67 80-132 (276)
36 PRK10439 enterobactin/ferric e 97.6 0.00019 4.1E-09 50.1 5.6 51 16-67 273-323 (411)
37 PRK10985 putative hydrolase; P 97.6 0.00024 5.1E-09 47.4 5.8 55 9-68 113-169 (324)
38 COG0412 Dienelactone hydrolase 97.5 0.00025 5.5E-09 46.0 5.2 52 7-62 90-141 (236)
39 TIGR03100 hydr1_PEP hydrolase, 97.5 0.0003 6.5E-09 45.9 5.5 53 10-67 82-134 (274)
40 TIGR01836 PHA_synth_III_C poly 97.5 0.00038 8.3E-09 46.7 6.0 53 11-68 120-172 (350)
41 KOG1552|consensus 97.5 0.00026 5.6E-09 47.0 4.9 53 10-68 112-164 (258)
42 COG1770 PtrB Protease II [Amin 97.5 0.00022 4.8E-09 52.4 4.8 58 9-69 507-564 (682)
43 PF12697 Abhydrolase_6: Alpha/ 97.5 0.00037 8.1E-09 41.7 5.0 36 32-67 66-101 (228)
44 COG2267 PldB Lysophospholipase 97.4 0.00071 1.5E-08 45.2 6.6 59 10-69 86-144 (298)
45 PF00561 Abhydrolase_1: alpha/ 97.4 0.00063 1.4E-08 41.5 5.9 56 6-66 23-78 (230)
46 PLN02385 hydrolase; alpha/beta 97.4 0.00052 1.1E-08 46.0 5.8 37 30-66 160-196 (349)
47 PRK10749 lysophospholipase L2; 97.4 0.00063 1.4E-08 45.4 6.1 38 30-67 129-166 (330)
48 KOG2281|consensus 97.4 0.00023 5E-09 52.7 3.7 63 1-65 698-760 (867)
49 KOG4388|consensus 97.3 0.00018 4E-09 52.9 3.1 47 5-51 442-488 (880)
50 PRK05077 frsA fermentation/res 97.3 0.00081 1.8E-08 46.7 6.0 51 14-67 250-300 (414)
51 TIGR00976 /NonD putative hydro 97.3 0.00072 1.6E-08 48.2 5.9 56 9-68 78-133 (550)
52 COG4099 Predicted peptidase [G 97.3 0.00041 8.9E-09 47.6 4.2 52 16-67 252-304 (387)
53 PF10230 DUF2305: Uncharacteri 97.3 0.0016 3.4E-08 42.9 6.6 62 5-66 56-121 (266)
54 TIGR03611 RutD pyrimidine util 97.2 0.0012 2.6E-08 40.7 5.4 46 19-66 69-114 (257)
55 PF08840 BAAT_C: BAAT / Acyl-C 97.2 0.00066 1.4E-08 43.3 4.3 52 11-66 4-55 (213)
56 TIGR03230 lipo_lipase lipoprot 97.2 0.0016 3.5E-08 46.1 6.2 39 26-64 113-151 (442)
57 TIGR02427 protocat_pcaD 3-oxoa 97.2 0.0013 2.7E-08 40.1 5.1 34 31-64 78-111 (251)
58 COG2819 Predicted hydrolase of 97.2 0.00064 1.4E-08 45.3 3.9 41 27-67 132-172 (264)
59 PLN02824 hydrolase, alpha/beta 97.1 0.0015 3.3E-08 42.3 5.5 55 7-66 82-136 (294)
60 PF11187 DUF2974: Protein of u 97.1 0.0012 2.5E-08 42.9 4.9 40 10-52 65-104 (224)
61 PRK10673 acyl-CoA esterase; Pr 97.1 0.0014 3E-08 41.2 4.9 34 31-64 80-113 (255)
62 PF11144 DUF2920: Protein of u 97.1 0.0023 4.9E-08 44.9 6.2 61 6-67 156-219 (403)
63 PRK11126 2-succinyl-6-hydroxy- 97.1 0.003 6.4E-08 39.4 6.1 53 12-66 48-101 (242)
64 KOG4409|consensus 97.0 0.00071 1.5E-08 46.8 3.4 55 12-66 138-194 (365)
65 TIGR03056 bchO_mg_che_rel puta 97.0 0.0029 6.2E-08 39.9 5.9 55 7-66 75-129 (278)
66 PLN02652 hydrolase; alpha/beta 97.0 0.0035 7.5E-08 43.5 6.5 53 10-67 191-245 (395)
67 KOG2112|consensus 97.0 0.0034 7.3E-08 40.6 5.8 58 9-66 70-127 (206)
68 TIGR01250 pro_imino_pep_2 prol 97.0 0.0035 7.6E-08 39.1 5.7 53 8-65 77-129 (288)
69 PF01764 Lipase_3: Lipase (cla 97.0 0.0028 6E-08 37.0 5.0 35 16-52 50-84 (140)
70 PLN02511 hydrolase 96.9 0.0027 5.8E-08 43.7 5.5 53 10-67 156-210 (388)
71 PRK03204 haloalkane dehalogena 96.9 0.0033 7.1E-08 41.1 5.7 54 7-65 81-134 (286)
72 PLN02965 Probable pheophorbida 96.9 0.0028 6.1E-08 40.4 5.3 47 18-65 59-105 (255)
73 PF06821 Ser_hydrolase: Serine 96.9 0.0024 5.3E-08 39.7 4.7 50 18-67 41-91 (171)
74 PLN02894 hydrolase, alpha/beta 96.9 0.0028 6.2E-08 43.7 5.4 36 30-65 174-209 (402)
75 PRK03592 haloalkane dehalogena 96.9 0.0037 8E-08 40.5 5.6 44 20-65 83-126 (295)
76 PF01738 DLH: Dienelactone hyd 96.9 0.002 4.3E-08 40.4 4.2 53 9-65 78-130 (218)
77 PF07819 PGAP1: PGAP1-like pro 96.8 0.0063 1.4E-07 39.2 6.2 51 15-65 68-121 (225)
78 PF03403 PAF-AH_p_II: Platelet 96.8 0.0029 6.2E-08 43.8 4.7 38 29-67 225-262 (379)
79 TIGR01607 PST-A Plasmodium sub 96.8 0.0031 6.8E-08 42.4 4.8 37 32-68 142-186 (332)
80 PF00151 Lipase: Lipase; Inte 96.7 0.0055 1.2E-07 41.8 5.7 36 20-55 138-173 (331)
81 PLN02211 methyl indole-3-aceta 96.7 0.0055 1.2E-07 40.0 5.4 54 8-65 67-120 (273)
82 PRK00870 haloalkane dehalogena 96.7 0.0061 1.3E-07 39.8 5.5 46 18-65 103-148 (302)
83 TIGR01738 bioH putative pimelo 96.7 0.0027 5.8E-08 38.6 3.6 34 32-65 65-98 (245)
84 PF05577 Peptidase_S28: Serine 96.6 0.008 1.7E-07 41.6 6.0 60 7-68 90-149 (434)
85 TIGR03343 biphenyl_bphD 2-hydr 96.6 0.005 1.1E-07 39.3 4.5 36 30-65 99-134 (282)
86 PF05448 AXE1: Acetyl xylan es 96.6 0.003 6.6E-08 42.8 3.7 41 10-53 156-196 (320)
87 cd00741 Lipase Lipase. Lipase 96.6 0.0071 1.5E-07 36.2 4.9 23 30-52 26-48 (153)
88 TIGR02240 PHA_depoly_arom poly 96.6 0.0067 1.5E-07 39.0 5.0 45 20-66 81-125 (276)
89 KOG2237|consensus 96.5 0.0037 8E-08 46.3 3.5 57 9-68 529-585 (712)
90 PLN02872 triacylglycerol lipas 96.4 0.0042 9E-08 43.2 3.6 51 9-65 143-195 (395)
91 PF02129 Peptidase_S15: X-Pro 96.3 0.01 2.2E-07 38.7 4.8 56 9-68 82-137 (272)
92 PRK14875 acetoin dehydrogenase 96.3 0.012 2.7E-07 38.9 5.3 46 18-65 185-230 (371)
93 TIGR01249 pro_imino_pep_1 prol 96.2 0.015 3.2E-07 38.3 5.3 52 8-64 76-127 (306)
94 PLN02408 phospholipase A1 96.2 0.013 2.8E-07 40.8 5.1 37 16-52 184-220 (365)
95 TIGR01392 homoserO_Ac_trn homo 96.2 0.018 3.9E-07 38.6 5.6 54 8-66 107-161 (351)
96 PF11288 DUF3089: Protein of u 96.1 0.015 3.2E-07 37.6 4.7 41 8-52 75-115 (207)
97 PF03959 FSH1: Serine hydrolas 96.1 0.014 3.1E-07 37.0 4.7 55 10-67 83-145 (212)
98 PRK10349 carboxylesterase BioH 96.1 0.0084 1.8E-07 38.0 3.5 35 31-65 73-107 (256)
99 PLN02454 triacylglycerol lipas 96.0 0.018 3.9E-07 40.7 5.1 36 16-51 212-247 (414)
100 PF06500 DUF1100: Alpha/beta h 95.9 0.0096 2.1E-07 42.0 3.4 51 14-67 246-296 (411)
101 PF06028 DUF915: Alpha/beta hy 95.9 0.03 6.6E-07 37.0 5.6 51 13-68 89-144 (255)
102 PF07224 Chlorophyllase: Chlor 95.9 0.025 5.4E-07 38.3 5.2 46 8-53 91-141 (307)
103 PF12715 Abhydrolase_7: Abhydr 95.9 0.0077 1.7E-07 42.2 2.8 40 11-53 208-247 (390)
104 PRK11071 esterase YqiA; Provis 95.9 0.042 9.1E-07 34.3 5.9 47 16-67 47-93 (190)
105 PLN02679 hydrolase, alpha/beta 95.9 0.032 7E-07 37.8 5.7 45 19-65 144-189 (360)
106 PRK08775 homoserine O-acetyltr 95.8 0.024 5.3E-07 37.9 4.9 46 19-65 126-171 (343)
107 COG0596 MhpC Predicted hydrola 95.8 0.03 6.6E-07 33.3 4.9 47 17-65 75-121 (282)
108 COG1647 Esterase/lipase [Gener 95.8 0.043 9.3E-07 36.2 5.6 49 10-66 69-117 (243)
109 PRK05371 x-prolyl-dipeptidyl a 95.7 0.042 9E-07 41.3 5.9 60 7-66 302-372 (767)
110 PLN02733 phosphatidylcholine-s 95.6 0.052 1.1E-06 38.5 6.1 36 32-67 162-201 (440)
111 PRK06765 homoserine O-acetyltr 95.6 0.038 8.2E-07 38.4 5.3 54 8-66 141-195 (389)
112 PLN02802 triacylglycerol lipas 95.6 0.032 6.9E-07 40.4 4.9 36 16-51 314-349 (509)
113 PLN02578 hydrolase 95.5 0.045 9.7E-07 36.9 5.2 34 31-64 151-184 (354)
114 TIGR01838 PHA_synth_I poly(R)- 95.5 0.059 1.3E-06 39.1 6.1 56 9-69 244-304 (532)
115 COG2382 Fes Enterochelin ester 95.4 0.016 3.5E-07 39.4 2.8 41 28-68 173-213 (299)
116 PLN02571 triacylglycerol lipas 95.4 0.042 9.2E-07 38.8 4.9 37 15-51 209-245 (413)
117 PLN02324 triacylglycerol lipas 95.3 0.045 9.8E-07 38.7 4.9 35 17-51 200-234 (415)
118 PLN02753 triacylglycerol lipas 95.3 0.045 9.7E-07 39.8 4.9 37 15-51 292-331 (531)
119 COG0627 Predicted esterase [Ge 95.2 0.025 5.5E-07 38.5 3.3 37 32-68 152-188 (316)
120 PLN02761 lipase class 3 family 95.2 0.051 1.1E-06 39.5 4.9 36 16-51 274-313 (527)
121 cd00519 Lipase_3 Lipase (class 95.1 0.07 1.5E-06 33.8 5.0 23 30-52 126-148 (229)
122 PF09752 DUF2048: Uncharacteri 95.0 0.079 1.7E-06 36.7 5.3 41 9-55 158-198 (348)
123 KOG1455|consensus 95.0 0.083 1.8E-06 36.1 5.4 56 9-67 109-164 (313)
124 PRK00175 metX homoserine O-ace 94.9 0.099 2.2E-06 35.7 5.6 54 7-65 126-180 (379)
125 PLN02719 triacylglycerol lipas 94.9 0.068 1.5E-06 38.8 4.8 36 16-51 279-317 (518)
126 PLN02310 triacylglycerol lipas 94.8 0.08 1.7E-06 37.4 4.9 36 16-51 191-228 (405)
127 PLN03087 BODYGUARD 1 domain co 94.7 0.12 2.7E-06 37.0 5.9 35 31-65 273-307 (481)
128 PRK06489 hypothetical protein; 94.7 0.037 8.1E-07 37.3 3.1 53 8-65 133-187 (360)
129 KOG4840|consensus 94.7 0.049 1.1E-06 36.4 3.5 52 10-66 90-143 (299)
130 PF00975 Thioesterase: Thioest 94.6 0.12 2.6E-06 32.1 4.9 20 33-52 67-86 (229)
131 PF03283 PAE: Pectinacetyleste 94.5 0.089 1.9E-06 36.4 4.6 40 9-51 136-175 (361)
132 PLN03037 lipase class 3 family 94.5 0.095 2.1E-06 38.1 4.8 34 18-51 302-337 (525)
133 PRK07581 hypothetical protein; 94.5 0.04 8.7E-07 36.6 2.8 35 31-65 122-157 (339)
134 PRK07868 acyl-CoA synthetase; 94.4 0.2 4.4E-06 38.3 6.7 37 32-68 141-178 (994)
135 PF02450 LCAT: Lecithin:choles 94.3 0.17 3.8E-06 35.0 5.7 38 30-67 117-160 (389)
136 PLN02980 2-oxoglutarate decarb 94.3 0.12 2.5E-06 41.8 5.3 53 8-65 1426-1478(1655)
137 PF05057 DUF676: Putative seri 94.2 0.09 2E-06 33.5 3.9 45 8-52 53-98 (217)
138 COG0429 Predicted hydrolase of 94.2 0.13 2.9E-06 35.6 4.8 54 11-69 132-187 (345)
139 KOG2564|consensus 94.0 0.041 9E-07 37.7 2.0 26 27-52 141-166 (343)
140 COG2945 Predicted hydrolase of 93.9 0.11 2.3E-06 33.8 3.7 41 9-53 84-124 (210)
141 PLN03084 alpha/beta hydrolase 93.8 0.2 4.4E-06 34.7 5.3 54 8-66 178-231 (383)
142 KOG2183|consensus 93.7 0.16 3.4E-06 36.4 4.5 55 8-65 146-200 (492)
143 PLN02847 triacylglycerol lipas 93.6 0.17 3.7E-06 37.5 4.7 40 13-52 226-271 (633)
144 COG3545 Predicted esterase of 93.5 0.22 4.8E-06 31.7 4.6 49 18-66 45-93 (181)
145 KOG3975|consensus 93.5 0.23 5E-06 33.6 4.9 42 8-53 89-131 (301)
146 PF05728 UPF0227: Uncharacteri 93.3 0.25 5.4E-06 31.2 4.7 38 13-52 42-79 (187)
147 PLN00413 triacylglycerol lipas 93.3 0.24 5.2E-06 35.8 4.9 21 31-51 283-303 (479)
148 KOG1838|consensus 93.2 0.35 7.7E-06 34.3 5.7 54 10-68 181-236 (409)
149 PF03583 LIP: Secretory lipase 93.1 0.38 8.2E-06 32.1 5.5 39 12-50 50-89 (290)
150 KOG3724|consensus 93.0 0.22 4.7E-06 38.2 4.6 24 31-54 181-204 (973)
151 COG4814 Uncharacterized protei 92.8 0.35 7.5E-06 32.7 4.9 50 13-67 122-176 (288)
152 KOG3043|consensus 92.3 0.058 1.3E-06 35.6 0.8 57 1-63 94-150 (242)
153 PF06342 DUF1057: Alpha/beta h 92.2 0.45 9.8E-06 32.4 4.9 39 15-54 88-126 (297)
154 KOG2551|consensus 92.2 0.42 9.1E-06 31.5 4.6 51 14-67 89-147 (230)
155 KOG2382|consensus 92.0 0.33 7.2E-06 33.3 4.2 31 30-60 121-152 (315)
156 KOG3847|consensus 91.6 0.085 1.9E-06 36.7 1.0 38 29-67 238-275 (399)
157 TIGR01839 PHA_synth_II poly(R) 91.3 1.3 2.8E-05 32.7 6.7 61 7-68 264-329 (560)
158 PF05677 DUF818: Chlamydia CHL 91.3 0.55 1.2E-05 32.8 4.7 39 11-51 196-234 (365)
159 PLN02162 triacylglycerol lipas 90.9 0.64 1.4E-05 33.6 4.8 21 31-51 277-297 (475)
160 PF06259 Abhydrolase_8: Alpha/ 90.6 2 4.3E-05 27.1 6.4 34 28-61 105-138 (177)
161 COG4947 Uncharacterized protei 90.5 0.13 2.9E-06 33.1 1.1 38 31-68 100-137 (227)
162 KOG3101|consensus 90.5 0.067 1.5E-06 35.5 -0.3 42 15-56 118-165 (283)
163 KOG4391|consensus 90.5 0.079 1.7E-06 35.4 0.0 55 3-60 122-177 (300)
164 KOG4569|consensus 89.8 0.57 1.2E-05 32.0 3.7 21 31-51 170-190 (336)
165 PRK05855 short chain dehydroge 89.8 1.1 2.4E-05 31.3 5.3 22 32-53 94-115 (582)
166 KOG2984|consensus 89.6 0.11 2.5E-06 34.3 0.2 49 8-62 96-144 (277)
167 PLN02934 triacylglycerol lipas 89.5 1.2 2.6E-05 32.5 5.3 21 31-51 320-340 (515)
168 COG1075 LipA Predicted acetylt 89.4 1 2.3E-05 30.6 4.7 51 12-64 109-161 (336)
169 COG4757 Predicted alpha/beta h 89.3 0.22 4.7E-06 33.4 1.4 43 6-53 84-126 (281)
170 COG1505 Serine proteases of th 89.2 0.049 1.1E-06 40.3 -1.8 56 9-68 480-536 (648)
171 KOG1454|consensus 89.1 1.2 2.6E-05 30.3 4.9 42 18-61 116-157 (326)
172 KOG4178|consensus 89.0 0.95 2.1E-05 31.2 4.3 37 31-67 112-148 (322)
173 COG2021 MET2 Homoserine acetyl 88.8 0.91 2E-05 31.8 4.2 56 6-66 125-181 (368)
174 COG3458 Acetyl esterase (deace 88.5 0.41 8.8E-06 32.8 2.3 38 11-51 158-195 (321)
175 PF08237 PE-PPE: PE-PPE domain 88.2 2.3 5.1E-05 27.6 5.6 37 15-51 31-67 (225)
176 COG3208 GrsT Predicted thioest 87.8 0.73 1.6E-05 30.6 3.1 41 10-52 53-94 (244)
177 PF01083 Cutinase: Cutinase; 87.5 2.4 5.3E-05 26.4 5.2 22 31-52 80-101 (179)
178 COG2936 Predicted acyl esteras 87.5 0.96 2.1E-05 33.3 3.8 56 9-68 105-160 (563)
179 PRK04940 hypothetical protein; 87.4 1.9 4.1E-05 27.3 4.7 38 15-52 41-80 (180)
180 KOG4667|consensus 87.1 1.8 3.9E-05 28.9 4.5 57 6-69 85-141 (269)
181 PTZ00472 serine carboxypeptida 86.8 1.6 3.4E-05 31.1 4.5 22 30-51 169-190 (462)
182 COG4188 Predicted dienelactone 86.6 0.99 2.1E-05 31.6 3.3 42 11-52 134-179 (365)
183 PF00450 Peptidase_S10: Serine 86.6 3.4 7.4E-05 28.0 5.9 57 12-68 115-182 (415)
184 KOG1553|consensus 86.5 1.4 3.1E-05 31.4 4.0 35 21-55 300-334 (517)
185 PF05990 DUF900: Alpha/beta hy 86.5 2.5 5.5E-05 27.3 5.0 39 30-68 91-138 (233)
186 TIGR01849 PHB_depoly_PhaZ poly 85.8 2.5 5.4E-05 29.9 5.0 58 6-69 148-210 (406)
187 COG4782 Uncharacterized protei 85.0 2.1 4.4E-05 30.2 4.2 42 5-51 169-210 (377)
188 PF09994 DUF2235: Uncharacteri 84.5 2.8 6.1E-05 27.8 4.6 37 11-51 75-111 (277)
189 TIGR03502 lipase_Pla1_cef extr 84.4 3.7 8.1E-05 31.5 5.7 24 30-53 553-576 (792)
190 COG2939 Carboxypeptidase C (ca 81.6 2.1 4.6E-05 31.2 3.3 56 11-66 177-235 (498)
191 TIGR03712 acc_sec_asp2 accesso 81.5 2.8 6.1E-05 30.6 3.9 43 9-51 333-376 (511)
192 PF02089 Palm_thioest: Palmito 81.2 8.3 0.00018 26.1 5.9 35 32-66 80-115 (279)
193 cd01826 acyloxyacyl_hydrolase_ 80.5 0.84 1.8E-05 31.3 1.0 17 29-45 9-25 (305)
194 KOG2624|consensus 80.1 1.8 3.8E-05 30.7 2.5 54 8-66 142-198 (403)
195 KOG4540|consensus 80.0 1.4 2.9E-05 30.7 1.8 22 31-52 275-296 (425)
196 COG5153 CVT17 Putative lipase 80.0 1.4 2.9E-05 30.7 1.8 22 31-52 275-296 (425)
197 PF05116 S6PP: Sucrose-6F-phos 79.9 2.1 4.6E-05 27.8 2.7 25 15-42 168-192 (247)
198 PF12048 DUF3530: Protein of u 79.1 13 0.00028 25.1 6.4 36 32-67 193-229 (310)
199 KOG2182|consensus 78.9 4.2 9.1E-05 29.8 4.1 58 8-68 150-208 (514)
200 COG3571 Predicted hydrolase of 77.0 5.7 0.00012 25.5 3.9 25 28-52 85-109 (213)
201 COG3673 Uncharacterized conser 76.2 6 0.00013 28.0 4.1 37 11-51 105-141 (423)
202 cd07205 Pat_PNPLA6_PNPLA7_NTE1 75.0 9.7 0.00021 23.0 4.5 41 5-52 8-48 (175)
203 KOG2369|consensus 74.5 13 0.00028 27.1 5.5 21 32-52 182-202 (473)
204 PF01674 Lipase_2: Lipase (cla 72.7 18 0.0004 23.4 5.5 20 33-52 76-95 (219)
205 PLN02633 palmitoyl protein thi 72.3 18 0.00039 25.0 5.6 34 33-66 95-130 (314)
206 PF11339 DUF3141: Protein of u 71.9 32 0.0007 25.7 7.1 53 6-58 114-166 (581)
207 PF12242 Eno-Rase_NADH_b: NAD( 68.8 18 0.00039 20.1 4.8 39 11-51 21-59 (78)
208 PLN02606 palmitoyl-protein thi 68.7 23 0.0005 24.4 5.5 49 14-66 81-131 (306)
209 smart00824 PKS_TE Thioesterase 68.4 22 0.00047 20.9 5.0 21 31-51 63-83 (212)
210 COG3150 Predicted esterase [Ge 68.1 15 0.00033 23.6 4.3 38 12-51 41-78 (191)
211 PF06057 VirJ: Bacterial virul 67.9 20 0.00043 23.1 4.9 29 20-50 58-86 (192)
212 cd07224 Pat_like Patatin-like 66.2 15 0.00033 23.7 4.1 35 16-54 17-51 (233)
213 PF05277 DUF726: Protein of un 65.4 27 0.00058 24.3 5.4 36 32-67 220-260 (345)
214 PRK01253 preprotein translocas 64.4 4.8 0.0001 20.7 1.3 49 4-52 4-52 (54)
215 PF13242 Hydrolase_like: HAD-h 64.1 7.3 0.00016 20.4 2.1 17 24-40 14-30 (75)
216 COG1908 FrhD Coenzyme F420-red 63.9 19 0.00042 21.8 4.0 32 11-42 74-105 (132)
217 COG3319 Thioesterase domains o 63.4 6.7 0.00015 26.1 2.1 20 33-52 66-85 (257)
218 cd07218 Pat_iPLA2 Calcium-inde 63.4 14 0.00031 24.2 3.7 36 15-54 17-52 (245)
219 COG0466 Lon ATP-dependent Lon 63.1 24 0.00052 27.3 5.1 44 8-51 635-692 (782)
220 PLN02517 phosphatidylcholine-s 62.9 25 0.00053 26.7 5.1 21 31-51 212-232 (642)
221 cd07210 Pat_hypo_W_succinogene 62.5 18 0.00039 23.2 4.0 32 15-52 17-48 (221)
222 PF07082 DUF1350: Protein of u 62.4 40 0.00087 22.6 5.6 22 33-54 91-112 (250)
223 PLN02213 sinapoylglucose-malat 61.9 17 0.00037 24.5 3.9 39 11-51 32-70 (319)
224 cd07207 Pat_ExoU_VipD_like Exo 61.2 28 0.0006 21.2 4.5 40 6-52 8-47 (194)
225 PLN02382 probable sucrose-phos 59.8 12 0.00027 26.3 3.1 28 15-42 178-205 (413)
226 COG3243 PhaC Poly(3-hydroxyalk 57.6 31 0.00066 25.0 4.7 25 31-55 180-204 (445)
227 PF07519 Tannase: Tannase and 57.2 30 0.00066 24.9 4.7 41 27-67 110-150 (474)
228 cd07214 Pat17_isozyme_like Pat 56.1 32 0.00068 23.7 4.5 37 16-52 22-63 (349)
229 PHA01735 hypothetical protein 56.0 11 0.00024 20.6 1.8 20 4-23 26-45 (76)
230 PRK10252 entF enterobactin syn 55.8 32 0.00069 26.9 4.9 20 32-51 1133-1152(1296)
231 KOG0979|consensus 55.0 11 0.00023 30.0 2.2 37 6-42 425-464 (1072)
232 cd07217 Pat17_PNPLA8_PNPLA9_li 54.0 36 0.00078 23.5 4.5 37 15-51 18-60 (344)
233 PF02662 FlpD: Methyl-viologen 54.0 44 0.00095 19.6 4.4 35 8-42 70-104 (124)
234 PRK03743 pdxA 4-hydroxythreoni 53.3 15 0.00033 25.5 2.6 38 3-40 174-211 (332)
235 PRK03371 pdxA 4-hydroxythreoni 52.8 15 0.00033 25.4 2.6 38 3-40 173-210 (326)
236 cd07215 Pat17_PNPLA8_PNPLA9_li 50.4 44 0.00096 22.6 4.5 37 15-51 17-59 (329)
237 cd07228 Pat_NTE_like_bacteria 50.4 21 0.00046 21.7 2.7 41 6-53 9-49 (175)
238 smart00827 PKS_AT Acyl transfe 49.8 33 0.00072 22.2 3.7 25 24-50 76-100 (298)
239 PRK05312 pdxA 4-hydroxythreoni 49.5 17 0.00037 25.2 2.4 37 4-40 179-216 (336)
240 cd07230 Pat_TGL4-5_like Triacy 48.4 39 0.00085 24.0 4.1 25 27-53 98-122 (421)
241 KOG2541|consensus 48.3 69 0.0015 22.0 5.0 36 31-66 91-127 (296)
242 PF13419 HAD_2: Haloacid dehal 47.9 43 0.00093 19.1 3.7 22 21-42 140-161 (176)
243 PRK01909 pdxA 4-hydroxythreoni 47.3 21 0.00046 24.7 2.5 37 4-40 170-207 (329)
244 TIGR01544 HAD-SF-IE haloacid d 47.2 29 0.00063 23.4 3.1 23 25-47 203-227 (277)
245 PF01726 LexA_DNA_bind: LexA D 46.2 28 0.00061 18.2 2.4 22 11-32 6-27 (65)
246 PLN03016 sinapoylglucose-malat 45.8 36 0.00079 24.2 3.6 21 31-51 164-184 (433)
247 PF00237 Ribosomal_L22: Riboso 45.7 55 0.0012 18.4 4.0 32 7-38 37-69 (105)
248 PF01734 Patatin: Patatin-like 44.6 31 0.00068 19.9 2.8 20 33-52 28-47 (204)
249 TIGR01485 SPP_plant-cyano sucr 44.5 34 0.00075 21.8 3.1 25 15-42 170-194 (249)
250 cd07208 Pat_hypo_Ecoli_yjju_li 43.9 29 0.00063 22.4 2.7 43 5-53 6-48 (266)
251 cd07198 Patatin Patatin-like p 43.9 31 0.00067 20.8 2.7 34 14-53 14-47 (172)
252 PRK10787 DNA-binding ATP-depen 43.9 68 0.0015 24.7 4.9 41 11-51 636-690 (784)
253 TIGR00557 pdxA 4-hydroxythreon 43.5 26 0.00056 24.2 2.5 37 4-40 167-204 (320)
254 PF04166 PdxA: Pyridoxal phosp 43.4 24 0.00052 24.1 2.3 38 3-40 147-185 (298)
255 cd00673 AlaRS_core Alanyl-tRNA 43.3 46 0.00099 22.1 3.5 34 6-39 87-123 (232)
256 cd07204 Pat_PNPLA_like Patatin 42.9 58 0.0012 21.1 4.0 21 34-54 33-53 (243)
257 PF06925 MGDG_synth: Monogalac 42.9 24 0.00052 21.3 2.1 21 18-38 146-166 (169)
258 PF04301 DUF452: Protein of un 42.8 40 0.00087 21.9 3.2 34 31-66 56-89 (213)
259 PF03096 Ndr: Ndr family; Int 42.8 63 0.0014 22.0 4.2 40 24-65 93-132 (283)
260 cd07216 Pat17_PNPLA8_PNPLA9_li 42.4 61 0.0013 21.6 4.1 17 35-51 45-61 (309)
261 PLN02209 serine carboxypeptida 41.9 48 0.001 23.7 3.7 38 14-51 148-186 (437)
262 PF09177 Syntaxin-6_N: Syntaxi 41.4 8.4 0.00018 21.6 -0.1 24 8-31 53-76 (97)
263 cd07220 Pat_PNPLA2 Patatin-lik 41.3 43 0.00093 22.0 3.2 20 34-53 38-57 (249)
264 TIGR02653 Lon_rel_chp conserve 40.9 1.1E+02 0.0025 23.4 5.6 25 6-30 533-557 (675)
265 PRK02746 pdxA 4-hydroxythreoni 39.7 31 0.00068 24.1 2.5 36 5-40 178-214 (345)
266 TIGR00128 fabD malonyl CoA-acy 39.5 59 0.0013 20.9 3.7 24 25-50 77-101 (290)
267 PF08282 Hydrolase_3: haloacid 39.5 33 0.00071 21.0 2.4 25 15-42 189-213 (254)
268 TIGR02312 HpaH 2-oxo-hepta-3-e 39.0 31 0.00066 22.9 2.3 35 4-38 202-238 (267)
269 COG0391 Uncharacterized conser 38.6 48 0.001 23.0 3.2 50 4-53 53-111 (323)
270 PRK15001 SAM-dependent 23S rib 38.5 74 0.0016 22.4 4.2 35 16-51 31-65 (378)
271 KOG3253|consensus 38.3 33 0.00072 26.3 2.5 58 6-63 221-282 (784)
272 cd07206 Pat_TGL3-4-5_SDP1 Tria 38.0 76 0.0016 21.7 4.1 24 28-53 95-118 (298)
273 PF03575 Peptidase_S51: Peptid 37.9 20 0.00044 21.4 1.2 13 34-46 70-82 (154)
274 PF10081 Abhydrolase_9: Alpha/ 37.5 80 0.0017 21.7 4.1 35 16-50 92-127 (289)
275 TIGR01488 HAD-SF-IB Haloacid D 37.3 54 0.0012 19.3 3.0 27 20-46 147-173 (177)
276 PRK01158 phosphoglycolate phos 37.2 29 0.00062 21.5 1.9 26 15-43 160-185 (230)
277 PF14253 AbiH: Bacteriophage a 37.1 22 0.00048 22.8 1.4 16 29-44 232-247 (270)
278 TIGR01454 AHBA_synth_RP 3-amin 36.9 63 0.0014 19.7 3.4 26 21-46 138-163 (205)
279 COG0031 CysK Cysteine synthase 36.9 73 0.0016 21.9 3.9 36 14-55 245-280 (300)
280 cd00842 MPP_ASMase acid sphing 36.3 41 0.00089 22.0 2.6 28 12-39 194-221 (296)
281 cd07231 Pat_SDP1-like Sugar-De 36.3 84 0.0018 21.9 4.1 24 28-53 94-117 (323)
282 TIGR01449 PGP_bact 2-phosphogl 36.0 59 0.0013 19.7 3.2 29 21-49 148-176 (213)
283 PF09722 DUF2384: Protein of u 36.0 29 0.00063 17.1 1.4 39 11-50 9-47 (54)
284 cd07232 Pat_PLPL Patain-like p 35.9 41 0.00088 23.8 2.6 19 35-53 98-116 (407)
285 cd07209 Pat_hypo_Ecoli_Z1214_l 35.9 45 0.00097 21.1 2.6 35 14-54 14-48 (215)
286 TIGR03218 catechol_dmpH 4-oxal 35.8 35 0.00075 22.6 2.1 34 5-38 200-235 (263)
287 PRK11133 serB phosphoserine ph 35.5 42 0.00092 22.9 2.6 28 18-45 251-278 (322)
288 PF13839 PC-Esterase: GDSL/SGN 35.5 73 0.0016 20.0 3.6 31 11-50 4-34 (263)
289 KOG2029|consensus 35.0 1.2E+02 0.0025 23.3 4.9 24 29-52 523-546 (697)
290 COG3007 Uncharacterized paraqu 34.6 78 0.0017 22.3 3.7 39 12-51 23-61 (398)
291 COG1995 PdxA Pyridoxal phospha 34.6 53 0.0012 23.0 2.9 38 3-40 172-210 (332)
292 TIGR02463 MPGP_rel mannosyl-3- 34.5 50 0.0011 20.5 2.6 25 16-43 183-207 (221)
293 cd07229 Pat_TGL3_like Triacylg 34.2 76 0.0017 22.5 3.7 26 26-53 107-132 (391)
294 TIGR03220 catechol_dmpE 2-oxop 34.1 35 0.00075 22.4 1.9 39 4-42 191-231 (255)
295 TIGR01491 HAD-SF-IB-PSPlk HAD- 34.0 59 0.0013 19.5 2.9 26 24-49 156-181 (201)
296 TIGR00763 lon ATP-dependent pr 33.9 1.7E+02 0.0036 22.5 5.6 44 8-51 637-694 (775)
297 TIGR01509 HAD-SF-IA-v3 haloaci 33.8 99 0.0021 18.1 3.8 23 24-46 150-172 (183)
298 PF08013 Tagatose_6_P_K: Tagat 33.8 53 0.0012 23.7 2.9 31 12-42 63-93 (424)
299 PRK11342 mhpD 2-keto-4-penteno 33.6 32 0.00069 22.7 1.7 36 4-39 195-232 (262)
300 TIGR03131 malonate_mdcH malona 33.6 82 0.0018 20.6 3.6 25 24-50 70-94 (295)
301 TIGR02816 pfaB_fam PfaB family 33.4 58 0.0012 24.1 3.1 24 25-50 260-283 (538)
302 PLN02752 [acyl-carrier protein 33.4 75 0.0016 21.4 3.5 27 24-50 112-142 (343)
303 COG0561 Cof Predicted hydrolas 33.4 37 0.00079 21.7 1.9 25 15-42 192-216 (264)
304 cd01819 Patatin_and_cPLA2 Pata 33.3 1E+02 0.0022 18.4 3.8 19 32-50 28-46 (155)
305 cd08757 SAM_PNT_ESE Sterile al 33.2 67 0.0015 16.9 2.7 32 13-44 7-38 (68)
306 PF14314 Methyltrans_Mon: Viru 33.1 98 0.0021 23.7 4.3 35 21-55 313-347 (675)
307 KOG0256|consensus 32.9 61 0.0013 23.7 3.0 27 28-54 143-169 (471)
308 PRK06835 DNA replication prote 32.5 1.4E+02 0.003 20.5 4.7 39 11-49 163-203 (329)
309 cd07213 Pat17_PNPLA8_PNPLA9_li 32.4 46 0.001 22.0 2.3 18 35-52 37-54 (288)
310 TIGR01548 HAD-SF-IA-hyp1 haloa 32.3 1.2E+02 0.0025 18.5 4.0 23 24-46 171-193 (197)
311 PF05822 UMPH-1: Pyrimidine 5' 32.1 30 0.00065 23.1 1.4 14 30-43 178-191 (246)
312 TIGR00344 alaS alanine--tRNA l 31.7 51 0.0011 25.7 2.7 32 6-37 85-119 (851)
313 PRK10976 putative hydrolase; P 31.6 31 0.00067 22.0 1.4 24 15-41 193-216 (266)
314 TIGR01656 Histidinol-ppas hist 31.4 51 0.0011 19.3 2.2 23 24-46 111-133 (147)
315 TIGR01482 SPP-subfamily Sucros 30.7 38 0.00083 20.9 1.7 25 16-43 153-177 (225)
316 PRK01584 alanyl-tRNA synthetas 30.6 45 0.00098 25.0 2.2 34 6-39 88-126 (594)
317 PRK08457 motB flagellar motor 30.6 76 0.0016 20.9 3.1 33 5-41 175-209 (257)
318 COG4321 Uncharacterized protei 30.4 68 0.0015 18.7 2.5 36 4-39 63-98 (102)
319 PRK05282 (alpha)-aspartyl dipe 30.3 39 0.00084 22.1 1.7 19 33-51 113-131 (233)
320 PF06658 DUF1168: Protein of u 29.6 16 0.00034 22.5 -0.2 17 35-51 25-41 (142)
321 PRK13288 pyrophosphatase PpaX; 29.4 70 0.0015 19.7 2.7 25 23-47 147-171 (214)
322 PF06956 RtcR: Regulator of RN 29.4 1.4E+02 0.0031 19.2 4.0 51 8-61 82-136 (183)
323 PRK08942 D,D-heptose 1,7-bisph 29.3 1.1E+02 0.0024 18.4 3.6 24 24-47 113-136 (181)
324 PF13711 DUF4160: Domain of un 29.2 76 0.0016 16.4 2.4 23 5-27 39-61 (66)
325 COG3340 PepE Peptidase E [Amin 29.1 12 0.00026 24.7 -0.9 16 33-48 118-133 (224)
326 PF10142 PhoPQ_related: PhoPQ- 29.0 2.1E+02 0.0045 20.2 5.3 42 11-52 150-192 (367)
327 cd03129 GAT1_Peptidase_E_like 29.0 45 0.00097 20.9 1.8 18 32-49 113-130 (210)
328 PRK10563 6-phosphogluconate ph 28.8 72 0.0016 19.7 2.7 25 24-48 152-176 (221)
329 TIGR01549 HAD-SF-IA-v1 haloaci 28.8 1.2E+02 0.0026 17.4 3.9 23 24-47 128-150 (154)
330 PF00691 OmpA: OmpA family; I 28.8 62 0.0014 17.3 2.2 22 20-41 59-80 (97)
331 PRK10513 sugar phosphate phosp 28.7 37 0.00081 21.7 1.4 25 15-42 199-223 (270)
332 cd07225 Pat_PNPLA6_PNPLA7 Pata 28.6 58 0.0013 22.0 2.3 31 16-52 33-63 (306)
333 PRK15458 tagatose 6-phosphate 28.2 57 0.0012 23.6 2.3 30 13-42 64-93 (426)
334 cd07212 Pat_PNPLA9 Patatin-lik 28.2 60 0.0013 22.0 2.4 17 35-51 35-51 (312)
335 TIGR02471 sucr_syn_bact_C sucr 28.0 50 0.0011 20.8 1.9 25 15-42 162-186 (236)
336 PRK00232 pdxA 4-hydroxythreoni 28.0 65 0.0014 22.4 2.5 37 4-40 175-211 (332)
337 PRK09552 mtnX 2-hydroxy-3-keto 28.0 97 0.0021 19.3 3.2 24 25-48 154-177 (219)
338 TIGR00758 UDG_fam4 uracil-DNA 27.9 1E+02 0.0022 18.9 3.2 33 9-43 81-113 (173)
339 TIGR01993 Pyr-5-nucltdase pyri 27.5 1.4E+02 0.0031 17.8 3.9 20 24-43 151-170 (184)
340 PRK09484 3-deoxy-D-manno-octul 27.4 39 0.00085 20.7 1.3 28 20-47 101-128 (183)
341 cd07222 Pat_PNPLA4 Patatin-lik 27.4 65 0.0014 20.9 2.4 34 15-52 16-51 (246)
342 cd07221 Pat_PNPLA3 Patatin-lik 27.3 80 0.0017 20.8 2.8 20 34-53 34-53 (252)
343 cd07211 Pat_PNPLA8 Patatin-lik 27.2 62 0.0013 21.5 2.3 17 35-51 44-60 (308)
344 PRK15126 thiamin pyrimidine py 27.0 41 0.00089 21.6 1.4 24 15-41 191-214 (272)
345 PRK00252 alaS alanyl-tRNA synt 27.0 66 0.0014 25.1 2.6 32 6-37 90-124 (865)
346 TIGR02252 DREG-2 REG-2-like, H 26.9 68 0.0015 19.5 2.3 18 24-41 170-187 (203)
347 PRK13226 phosphoglycolate phos 26.8 1.2E+02 0.0025 19.1 3.4 25 23-47 160-184 (229)
348 PRK10530 pyridoxal phosphate ( 26.8 41 0.00089 21.4 1.3 24 16-42 203-226 (272)
349 cd03145 GAT1_cyanophycinase Ty 26.7 48 0.001 21.1 1.6 20 32-51 116-135 (217)
350 cd07199 Pat17_PNPLA8_PNPLA9_li 26.3 63 0.0014 20.8 2.1 18 35-52 37-54 (258)
351 TIGR02253 CTE7 HAD superfamily 26.3 74 0.0016 19.5 2.4 19 23-41 159-177 (221)
352 TIGR01670 YrbI-phosphatas 3-de 26.2 50 0.0011 19.7 1.6 28 20-47 81-108 (154)
353 cd08538 SAM_PNT-ESE-2-like Ste 26.1 69 0.0015 17.6 2.0 35 9-43 8-42 (78)
354 PLN02770 haloacid dehalogenase 26.1 1.1E+02 0.0024 19.5 3.2 25 24-48 174-198 (248)
355 cd08532 SAM_PNT-PDEF-like Ster 26.1 1E+02 0.0022 16.8 2.6 41 5-47 7-47 (76)
356 PLN02900 alanyl-tRNA synthetas 25.9 68 0.0015 25.4 2.5 32 6-37 108-142 (936)
357 PF00698 Acyl_transf_1: Acyl t 25.8 71 0.0015 21.2 2.3 25 24-50 78-102 (318)
358 TIGR00213 GmhB_yaeD D,D-heptos 25.6 1.2E+02 0.0025 18.3 3.2 24 24-47 116-139 (176)
359 PF05362 Lon_C: Lon protease ( 25.5 1.9E+02 0.004 18.6 4.1 40 11-50 68-121 (204)
360 PRK11587 putative phosphatase; 25.4 1.4E+02 0.0031 18.4 3.6 24 24-47 148-171 (218)
361 PRK10826 2-deoxyglucose-6-phos 25.3 78 0.0017 19.6 2.4 27 21-47 155-181 (222)
362 PRK00565 rplV 50S ribosomal pr 25.1 1.5E+02 0.0032 17.1 3.6 33 8-40 42-75 (112)
363 TIGR01990 bPGM beta-phosphoglu 25.0 1E+02 0.0022 18.2 2.8 22 22-43 149-170 (185)
364 PF05705 DUF829: Eukaryotic pr 25.0 1.9E+02 0.004 18.2 4.3 39 13-51 47-86 (240)
365 COG0241 HisB Histidinol phosph 25.0 80 0.0017 20.0 2.3 23 21-43 112-134 (181)
366 TIGR02810 agaZ_gatZ D-tagatose 24.9 76 0.0017 22.9 2.4 30 13-42 60-89 (420)
367 cd01820 PAF_acetylesterase_lik 24.6 89 0.0019 19.3 2.5 15 29-43 30-44 (214)
368 PRK15052 D-tagatose-1,6-bispho 24.5 79 0.0017 22.9 2.4 30 13-42 61-90 (421)
369 cd07227 Pat_Fungal_NTE1 Fungal 24.5 79 0.0017 21.1 2.4 19 34-52 40-58 (269)
370 TIGR01487 SPP-like sucrose-pho 24.3 53 0.0011 20.3 1.5 26 16-44 151-176 (215)
371 PRK10279 hypothetical protein; 24.3 79 0.0017 21.4 2.4 32 15-52 22-53 (300)
372 smart00757 CRA CT11-RanBPM. pr 24.3 80 0.0017 16.9 2.1 20 12-31 2-21 (99)
373 TIGR02254 YjjG/YfnB HAD superf 24.2 89 0.0019 19.0 2.5 20 22-41 160-180 (224)
374 KOG2385|consensus 24.1 3E+02 0.0064 21.0 5.3 21 31-51 446-466 (633)
375 COG1752 RssA Predicted esteras 24.0 1.5E+02 0.0034 19.6 3.7 28 24-53 33-60 (306)
376 TIGR01484 HAD-SF-IIB HAD-super 23.9 71 0.0015 19.4 2.0 26 16-44 167-192 (204)
377 PF14300 DUF4375: Domain of un 23.7 1.1E+02 0.0023 17.7 2.6 14 14-27 110-123 (123)
378 cd02650 nuc_hydro_CaPnhB NH_hy 23.5 2.3E+02 0.0051 18.8 5.0 51 14-67 100-152 (304)
379 KOG2214|consensus 23.4 50 0.0011 24.6 1.3 21 34-54 204-224 (543)
380 PF02273 Acyl_transf_2: Acyl t 23.2 2.6E+02 0.0056 19.3 5.1 53 8-68 83-135 (294)
381 PF11312 DUF3115: Protein of u 23.2 2.7E+02 0.0058 19.4 4.8 21 32-52 88-108 (315)
382 TIGR02802 Pal_lipo peptidoglyc 22.7 1.2E+02 0.0026 16.6 2.6 22 20-41 60-81 (104)
383 cd00840 MPP_Mre11_N Mre11 nucl 22.6 1.4E+02 0.0031 18.1 3.2 30 10-41 23-52 (223)
384 PF05139 Erythro_esteras: Eryt 22.5 1.2E+02 0.0025 20.4 2.9 36 6-42 36-71 (346)
385 TIGR00619 sbcd exonuclease Sbc 22.3 2.1E+02 0.0046 18.5 4.1 32 7-40 18-49 (253)
386 TIGR03607 patatin-related prot 22.2 81 0.0018 24.4 2.3 18 34-51 68-85 (739)
387 PF02198 SAM_PNT: Sterile alph 22.1 88 0.0019 16.9 1.9 41 6-47 15-55 (84)
388 PRK09038 flagellar motor prote 21.9 1.4E+02 0.0029 20.0 3.1 32 6-41 184-217 (281)
389 COG0331 FabD (acyl-carrier-pro 21.6 1.5E+02 0.0033 20.2 3.4 23 28-50 81-103 (310)
390 COG0328 RnhA Ribonuclease HI [ 21.6 1.7E+02 0.0038 18.1 3.3 27 11-43 49-75 (154)
391 TIGR02009 PGMB-YQAB-SF beta-ph 21.6 1.3E+02 0.0029 17.7 2.8 24 24-47 152-175 (185)
392 TIGR02468 sucrsPsyn_pln sucros 21.5 83 0.0018 25.3 2.3 25 15-42 959-984 (1050)
393 TIGR02069 cyanophycinase cyano 21.4 58 0.0013 21.4 1.3 19 33-51 116-134 (250)
394 TIGR01428 HAD_type_II 2-haloal 21.4 1.3E+02 0.0028 18.1 2.8 19 24-42 158-176 (198)
395 cd02649 nuc_hydro_CeIAG nuc_hy 21.4 2.7E+02 0.0058 18.8 4.9 50 15-67 103-154 (306)
396 cd08534 SAM_PNT-GABP-alpha Ste 21.4 1.4E+02 0.0031 16.7 2.7 42 6-48 17-58 (89)
397 PRK03011 butyrate kinase; Prov 21.4 1.6E+02 0.0035 20.5 3.5 21 18-38 283-303 (358)
398 TIGR00338 serB phosphoserine p 21.3 1.3E+02 0.0027 18.5 2.7 23 24-46 161-183 (219)
399 PF06955 XET_C: Xyloglucan end 21.1 1.2E+02 0.0025 15.1 2.1 13 11-23 18-30 (51)
400 PRK13222 phosphoglycolate phos 20.9 1.4E+02 0.0031 18.2 2.9 22 22-43 157-178 (226)
401 COG0013 AlaS Alanyl-tRNA synth 20.9 1.3E+02 0.0028 23.8 3.2 32 6-37 94-128 (879)
402 cd07219 Pat_PNPLA1 Patatin-lik 20.9 1E+02 0.0022 22.0 2.4 18 35-52 47-64 (382)
403 PF02782 FGGY_C: FGGY family o 20.8 2E+02 0.0044 17.2 3.6 24 18-41 136-160 (198)
404 TIGR01668 YqeG_hyp_ppase HAD s 20.8 88 0.0019 18.9 1.9 19 24-42 101-119 (170)
405 PLN02714 thiamin pyrophosphoki 20.8 1.4E+02 0.0029 19.4 2.9 38 5-42 84-121 (229)
406 COG2179 Predicted hydrolase of 20.2 88 0.0019 19.9 1.8 21 20-40 99-119 (175)
407 COG4220 Phage DNA packaging pr 20.1 1.3E+02 0.0028 19.1 2.6 26 1-26 35-60 (174)
408 PLN02779 haloacid dehalogenase 20.1 1.7E+02 0.0037 19.3 3.3 25 23-47 211-235 (286)
409 KOG2882|consensus 20.1 83 0.0018 21.8 1.8 19 24-42 234-252 (306)
No 1
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=99.82 E-value=1.2e-20 Score=129.73 Aligned_cols=62 Identities=53% Similarity=0.880 Sum_probs=57.7
Q ss_pred cCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc--cccceeecccc
Q psy4013 5 VANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV--MPDRIIDQSSW 66 (69)
Q Consensus 5 ~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~--~~~~~i~~sg~ 66 (69)
++|+|+.|++.||+||++||+.|||||+||+|+|+||||..+..+++++.. +++++|.+||.
T Consensus 181 ~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 181 SGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp BSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred chhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 399999999999999999999999999999999999999999999999864 89999999994
No 2
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.71 E-value=8.7e-18 Score=117.60 Aligned_cols=65 Identities=48% Similarity=0.732 Sum_probs=60.7
Q ss_pred cccCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc--cccceeeccccc
Q psy4013 3 ARVANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV--MPDRIIDQSSWL 67 (69)
Q Consensus 3 ~~~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~--~~~~~i~~sg~~ 67 (69)
....|.|+.|+..||+|+++||+.|||||++|+|+|+||||..++.++..|.. +++++|.+||..
T Consensus 151 ~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~ 217 (491)
T COG2272 151 AFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAA 217 (491)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCC
Confidence 45679999999999999999999999999999999999999999999998876 789999999865
No 3
>KOG4389|consensus
Probab=99.71 E-value=6.1e-18 Score=118.85 Aligned_cols=67 Identities=45% Similarity=0.686 Sum_probs=63.4
Q ss_pred ccccCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc--cccceeecccccc
Q psy4013 2 KARVANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV--MPDRIIDQSSWLQ 68 (69)
Q Consensus 2 ~~~~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~--~~~~~i~~sg~~~ 68 (69)
++.|||-|+.|+..|++|+++|+..|||||+||+|.|+|||+..+.+++++|.+ +++++|.+||.++
T Consensus 188 ~eaPGNmGl~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 188 PEAPGNMGLLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred CCCCCccchHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 467999999999999999999999999999999999999999999999999987 7899999999763
No 4
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.71 E-value=1.8e-17 Score=114.57 Aligned_cols=65 Identities=48% Similarity=0.781 Sum_probs=60.4
Q ss_pred cccCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc--cccceeeccccc
Q psy4013 3 ARVANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV--MPDRIIDQSSWL 67 (69)
Q Consensus 3 ~~~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~--~~~~~i~~sg~~ 67 (69)
..++|+++.|+..|++|+++|++.|||||++|+|+|+||||+++..+++++.. +++++|.+||..
T Consensus 147 ~~~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~ 213 (493)
T cd00312 147 ELPGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSA 213 (493)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCc
Confidence 35789999999999999999999999999999999999999999999998754 789999999965
No 5
>KOG1516|consensus
Probab=99.70 E-value=1.7e-17 Score=116.09 Aligned_cols=64 Identities=47% Similarity=0.800 Sum_probs=60.7
Q ss_pred cccCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc--cccceeecccc
Q psy4013 3 ARVANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV--MPDRIIDQSSW 66 (69)
Q Consensus 3 ~~~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~--~~~~~i~~sg~ 66 (69)
..++|+++.|+..|++|+++||+.|||||++|+++||||||.++.+++++|.. +++++|.+||.
T Consensus 166 ~~~gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 166 AAPGNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 34899999999999999999999999999999999999999999999999977 78999999986
No 6
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.41 E-value=2e-13 Score=84.89 Aligned_cols=65 Identities=26% Similarity=0.411 Sum_probs=56.3
Q ss_pred cCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCC----ccccceeeccccccC
Q psy4013 5 VANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPT----VMPDRIIDQSSWLQI 69 (69)
Q Consensus 5 ~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~----~~~~~~i~~sg~~~~ 69 (69)
+-...++|+..|++|+.+++.+++.|++||+|+|+||||++++.++.... ..+++.+.+||+.|+
T Consensus 44 ~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~ 112 (211)
T PF07859_consen 44 PFPAALEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDL 112 (211)
T ss_dssp STTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSST
T ss_pred cccccccccccceeeeccccccccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccc
Confidence 34567899999999999999999999999999999999999999998432 357888999998653
No 7
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.38 E-value=5.8e-13 Score=87.86 Aligned_cols=63 Identities=25% Similarity=0.402 Sum_probs=55.6
Q ss_pred ChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc----cccceeeccccccC
Q psy4013 7 NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV----MPDRIIDQSSWLQI 69 (69)
Q Consensus 7 n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~----~~~~~i~~sg~~~~ 69 (69)
...++|+.+|++|+.+|+++|++||+||.|+|+||||||++.+.+.... .+...+.+++++|+
T Consensus 127 p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~ 193 (312)
T COG0657 127 PAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDL 193 (312)
T ss_pred CchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCC
Confidence 4578999999999999999999999999999999999999999987654 56777888888763
No 8
>PRK10162 acetyl esterase; Provisional
Probab=99.20 E-value=3.8e-11 Score=80.05 Aligned_cols=61 Identities=10% Similarity=0.052 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCC------Cccccceeecccccc
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP------TVMPDRIIDQSSWLQ 68 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~------~~~~~~~i~~sg~~~ 68 (69)
.+++|+..+++|+.++.+++++|+++|.|+|+|+||++++.+++.. ...+.+.+.++|+++
T Consensus 130 ~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~ 196 (318)
T PRK10162 130 QAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYG 196 (318)
T ss_pred CcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccC
Confidence 4789999999999999999999999999999999999999888642 235677788888765
No 9
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.02 E-value=4.4e-10 Score=70.34 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccccC
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQI 69 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~~ 69 (69)
..+.|+..+++|+.+ +...||+||.++|+|+||+++..++...+.+++.++..+|++|+
T Consensus 43 ~~~~D~~~~i~~l~~---~~~iD~~ri~i~G~S~GG~~a~~~~~~~~~~f~a~v~~~g~~d~ 101 (213)
T PF00326_consen 43 ADVDDVVAAIEYLIK---QYYIDPDRIGIMGHSYGGYLALLAATQHPDRFKAAVAGAGVSDL 101 (213)
T ss_dssp HHHHHHHHHHHHHHH---TTSEEEEEEEEEEETHHHHHHHHHHHHTCCGSSEEEEESE-SST
T ss_pred cchhhHHHHHHHHhc---cccccceeEEEEcccccccccchhhcccceeeeeeeccceecch
Confidence 345666667777654 45789999999999999999999999777788889999988763
No 10
>KOG1515|consensus
Probab=98.96 E-value=1.2e-09 Score=74.31 Aligned_cols=62 Identities=24% Similarity=0.314 Sum_probs=53.0
Q ss_pred ChhHHHHHHHHHHHHHh-hHHhCCCCCcEEEEecChHHHHHHHHHhCCC------ccccceeecccccc
Q psy4013 7 NYGLMDQIAALHWVQQN-IALFGGDPGNVTMMGHGTGAACINFLMISPT------VMPDRIIDQSSWLQ 68 (69)
Q Consensus 7 n~~~~D~~~al~wi~~~-~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~------~~~~~~i~~sg~~~ 68 (69)
-.+++|+..|+.|+.++ ..+++.|++||+|+|+||||+++..++..-. ...++.|.+.+++|
T Consensus 140 Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~ 208 (336)
T KOG1515|consen 140 PAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQ 208 (336)
T ss_pred CccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccC
Confidence 35789999999999998 8899999999999999999999998887422 35678888888775
No 11
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=98.54 E-value=3.1e-07 Score=57.76 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
..|+...++++++ +++.|++||+|+|+|+||.++..+....+..+.+++.+||..
T Consensus 76 ~~~~~~~i~~~~~---~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~ 130 (212)
T TIGR01840 76 VESLHQLIDAVKA---NYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLP 130 (212)
T ss_pred HHHHHHHHHHHHH---hcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCc
Confidence 4556666666655 578999999999999999999999988777888888888764
No 12
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.52 E-value=3.8e-07 Score=62.99 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhC-----CCccccceeeccccccC
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMIS-----PTVMPDRIIDQSSWLQI 69 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~-----~~~~~~~~i~~sg~~~~ 69 (69)
..+.|..+..+++-+. .| .++|.|||+||||+|+..++.. +...|+.+|.+|+|+++
T Consensus 176 tQL~qlv~~Y~~Lv~~----~G-~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l 237 (374)
T PF10340_consen 176 TQLRQLVATYDYLVES----EG-NKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNL 237 (374)
T ss_pred hHHHHHHHHHHHHHhc----cC-CCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCC
Confidence 3456677777766632 23 4789999999999999988863 22367899999999975
No 13
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=98.48 E-value=7e-07 Score=56.39 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhH---HhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 11 MDQIAALHWVQQNIA---LFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 11 ~D~~~al~wi~~~~~---~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
.++..+.+.+.+-++ +.+.+++||+++|+|.||.++..+++..+.++.+++.+||++
T Consensus 81 ~~i~~s~~~l~~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~ 140 (216)
T PF02230_consen 81 AGIEESAERLDELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYL 140 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccc
Confidence 444444444443333 457899999999999999999999999988999999999986
No 14
>COG0400 Predicted esterase [General function prediction only]
Probab=98.40 E-value=1.1e-06 Score=56.50 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 13 QIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 13 ~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
...-.+++.....+++.|++|+++.|+|.||.+++.+++..+.++.++|.+||.+
T Consensus 80 ~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~ 134 (207)
T COG0400 80 TEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGML 134 (207)
T ss_pred HHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcC
Confidence 3344577788888999999999999999999999999999999999999999875
No 15
>PRK11460 putative hydrolase; Provisional
Probab=98.27 E-value=3.9e-06 Score=53.87 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=40.3
Q ss_pred HHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 18 HWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 18 ~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
++++....+++.+++||+++|+|.||.+++.++...+....+++..||.+
T Consensus 89 ~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~ 138 (232)
T PRK11460 89 ETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRY 138 (232)
T ss_pred HHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccc
Confidence 45555566778899999999999999999988876666667778888764
No 16
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=98.20 E-value=3.9e-06 Score=54.29 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=38.8
Q ss_pred HHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 20 VQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 20 i~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
+++-..++..|++||+++|.|+||.++..+....+.+|..+...||.
T Consensus 85 v~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~ 131 (220)
T PF10503_consen 85 VDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGV 131 (220)
T ss_pred HHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeeccc
Confidence 33445578999999999999999999999998888888777666664
No 17
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=98.16 E-value=9.1e-06 Score=53.10 Aligned_cols=42 Identities=12% Similarity=0.095 Sum_probs=37.5
Q ss_pred hCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccccc
Q psy4013 27 FGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQ 68 (69)
Q Consensus 27 ~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~ 68 (69)
++.|++++.++|+|+||+++..+....+..+..++.++|.++
T Consensus 133 ~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~ 174 (275)
T TIGR02821 133 FPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIVA 174 (275)
T ss_pred CCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCccC
Confidence 678999999999999999999999988888888888888754
No 18
>PRK10115 protease 2; Provisional
Probab=98.09 E-value=7.4e-06 Score=60.02 Aligned_cols=59 Identities=15% Similarity=0.163 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccccC
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQI 69 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~~ 69 (69)
..+.|+.+|++|+.++. -.||+|+.++|.|+||.++.+.+...+.+++.+|...|++|+
T Consensus 503 ~~~~D~~a~~~~Lv~~g---~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~ 561 (686)
T PRK10115 503 NTFNDYLDACDALLKLG---YGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDV 561 (686)
T ss_pred CcHHHHHHHHHHHHHcC---CCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhH
Confidence 46899999999997541 358999999999999999999998888899999999998874
No 19
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=98.07 E-value=1.7e-05 Score=46.00 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 11 MDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
.+....++++. ..+. |+++|.++|+|+||..+..++... ..++++|.++++
T Consensus 44 ~~~~~~~~~~~---~~~~-~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~ 94 (145)
T PF12695_consen 44 DAVERVLADIR---AGYP-DPDRIILIGHSMGGAIAANLAARN-PRVKAVVLLSPY 94 (145)
T ss_dssp HHHHHHHHHHH---HHHC-TCCEEEEEEETHHHHHHHHHHHHS-TTESEEEEESES
T ss_pred HHHHHHHHHHH---hhcC-CCCcEEEEEEccCcHHHHHHhhhc-cceeEEEEecCc
Confidence 34455555554 3334 899999999999999999988876 777888888874
No 20
>PRK13604 luxD acyl transferase; Provisional
Probab=98.01 E-value=2.5e-05 Score=52.88 Aligned_cols=54 Identities=9% Similarity=0.142 Sum_probs=41.5
Q ss_pred ChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccccc
Q psy4013 7 NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQ 68 (69)
Q Consensus 7 n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~ 68 (69)
..+..|+..+++|++++ +.++|.|.|||.||..+...+..+ ..+..|..||+.+
T Consensus 89 s~g~~Dl~aaid~lk~~------~~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~ 142 (307)
T PRK13604 89 SIGKNSLLTVVDWLNTR------GINNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVN 142 (307)
T ss_pred cccHHHHHHHHHHHHhc------CCCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCccc
Confidence 35789999999999874 356899999999999975554432 3666888888765
No 21
>PLN02442 S-formylglutathione hydrolase
Probab=97.95 E-value=2.9e-05 Score=51.12 Aligned_cols=50 Identities=10% Similarity=0.110 Sum_probs=40.0
Q ss_pred HHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccccc
Q psy4013 17 LHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQ 68 (69)
Q Consensus 17 l~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~ 68 (69)
..++.++... .|++++.++|+|+||++++.+....+.+++.++.+||.++
T Consensus 130 ~~~i~~~~~~--~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~ 179 (283)
T PLN02442 130 PKLLSDNFDQ--LDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIAN 179 (283)
T ss_pred HHHHHHHHHh--cCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccC
Confidence 4455554433 5889999999999999999999987788888888888764
No 22
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=97.92 E-value=2.5e-05 Score=52.87 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhhHHhCC--CCCcEEEEecChHHHHHHHHHhCCC-----ccccceeeccccc
Q psy4013 10 LMDQIAALHWVQQNIALFGG--DPGNVTMMGHGTGAACINFLMISPT-----VMPDRIIDQSSWL 67 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~--d~~~i~l~G~SaGa~l~~~~~~~~~-----~~~~~~i~~sg~~ 67 (69)
.+|+.++++|++..- +| ..++|+|||||-|+.-+..++..+. ...+++|.++++=
T Consensus 87 ~~eI~~~v~ylr~~~---~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVS 148 (303)
T PF08538_consen 87 VEEIAQLVEYLRSEK---GGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVS 148 (303)
T ss_dssp HHHHHHHHHHHHHHS---------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE--
T ss_pred HHHHHHHHHHHHHhh---ccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCC
Confidence 578889999999753 34 6889999999999999999998654 4668889988753
No 23
>PLN00021 chlorophyllase
Probab=97.88 E-value=4.5e-05 Score=51.41 Aligned_cols=58 Identities=17% Similarity=0.316 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHhhHH-----hCCCCCcEEEEecChHHHHHHHHHhCCCc-----cccceeeccc
Q psy4013 8 YGLMDQIAALHWVQQNIAL-----FGGDPGNVTMMGHGTGAACINFLMISPTV-----MPDRIIDQSS 65 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~-----~~~d~~~i~l~G~SaGa~l~~~~~~~~~~-----~~~~~i~~sg 65 (69)
..+.|...++.|+.+.... ...|+++++++|||.||.++..+...... .+.+.|.+.+
T Consensus 97 ~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldP 164 (313)
T PLN00021 97 DEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDP 164 (313)
T ss_pred hhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecc
Confidence 3467888899999986554 34678999999999999999998876432 3445554443
No 24
>KOG4627|consensus
Probab=97.88 E-value=1.3e-05 Score=52.48 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc-cccceeeccccccC
Q psy4013 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV-MPDRIIDQSSWLQI 69 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~-~~~~~i~~sg~~~~ 69 (69)
+.|....+.|+-+.- -+.+.+.+.|||||||+++-.....+. +..+.+..||+++|
T Consensus 118 ~~~~~~gv~filk~~----~n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l 174 (270)
T KOG4627|consen 118 MTQFTHGVNFILKYT----ENTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDL 174 (270)
T ss_pred HHHHHHHHHHHHHhc----ccceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhH
Confidence 455566667776533 356679999999999999988887665 56788889998864
No 25
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=97.86 E-value=5.3e-05 Score=50.30 Aligned_cols=59 Identities=10% Similarity=0.204 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHHHHHHhhHHh-----CCCCCcEEEEecChHHHHHHHHHhCC-----Cccccceeeccc
Q psy4013 7 NYGLMDQIAALHWVQQNIALF-----GGDPGNVTMMGHGTGAACINFLMISP-----TVMPDRIIDQSS 65 (69)
Q Consensus 7 n~~~~D~~~al~wi~~~~~~~-----~~d~~~i~l~G~SaGa~l~~~~~~~~-----~~~~~~~i~~sg 65 (69)
...+.+....+.|+.++.... ..|-++|.|+|||.||..+..+.+.. ..+++.++.+.+
T Consensus 61 ~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDP 129 (259)
T PF12740_consen 61 TDEVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDP 129 (259)
T ss_pred chhHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEecc
Confidence 345677888999998876665 35899999999999999998888765 335666666554
No 26
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.84 E-value=4.3e-05 Score=55.33 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=45.9
Q ss_pred CChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 6 ANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 6 ~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
+-..++|+..+++|+.+.. ..|++||.++|+|.||.++.+.+.+.. .++.++...+.+
T Consensus 450 g~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~ 507 (620)
T COG1506 450 GGVDLEDLIAAVDALVKLP---LVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGV 507 (620)
T ss_pred CCccHHHHHHHHHHHHhCC---CcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcc
Confidence 4457788889999886543 368999999999999999999998877 666666666543
No 27
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.83 E-value=5.5e-05 Score=51.23 Aligned_cols=58 Identities=21% Similarity=0.166 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 9 GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
++.|+---.+-+.+-+.+|+.||+||++.|-|+||.|+..++...+..+..+-.++|.
T Consensus 121 g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~ 178 (312)
T COG3509 121 GVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGL 178 (312)
T ss_pred CccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecc
Confidence 4556666666667778899999999999999999999999999877777665555554
No 28
>PRK10566 esterase; Provisional
Probab=97.83 E-value=6.4e-05 Score=47.56 Aligned_cols=43 Identities=7% Similarity=-0.099 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc
Q psy4013 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV 55 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~ 55 (69)
+.|...++.|+.+. ...|++||.++|+|.||.++..+....+.
T Consensus 88 ~~~~~~~~~~l~~~---~~~~~~~i~v~G~S~Gg~~al~~~~~~~~ 130 (249)
T PRK10566 88 MQEFPTLRAAIREE---GWLLDDRLAVGGASMGGMTALGIMARHPW 130 (249)
T ss_pred HHHHHHHHHHHHhc---CCcCccceeEEeecccHHHHHHHHHhCCC
Confidence 45666666666542 23689999999999999999988765443
No 29
>KOG2100|consensus
Probab=97.81 E-value=3.8e-05 Score=57.06 Aligned_cols=58 Identities=19% Similarity=0.023 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCC-ccccceeeccccccC
Q psy4013 9 GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPT-VMPDRIIDQSSWLQI 69 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~-~~~~~~i~~sg~~~~ 69 (69)
.+.|+..+++++.++. -.|++||.++|+|.||.+++..+.+++ ..++..++.+|+.++
T Consensus 588 ev~D~~~~~~~~~~~~---~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~ 646 (755)
T KOG2100|consen 588 EVKDQIEAVKKVLKLP---FIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDW 646 (755)
T ss_pred chHHHHHHHHHHHhcc---cccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeee
Confidence 4677778888777665 799999999999999999999999886 677888999998764
No 30
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=97.80 E-value=9.1e-05 Score=48.97 Aligned_cols=55 Identities=13% Similarity=0.022 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
..|+..++++++... ..+..+++|+|||.||.++..+....+.++++.|.++++.
T Consensus 115 ~~D~~~~i~~l~~~~---~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~ 169 (330)
T PLN02298 115 VEDCLSFFNSVKQRE---EFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMC 169 (330)
T ss_pred HHHHHHHHHHHHhcc---cCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccc
Confidence 567777777776432 1233469999999999999988887777788888887754
No 31
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=97.76 E-value=0.00017 Score=43.86 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=37.7
Q ss_pred HHHHHHHHHH-HHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 10 LMDQIAALHW-VQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 10 ~~D~~~al~w-i~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
..+....+++ +.....++ +.+++.++|||.||.++..++...+..+++.+.+++.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~--~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~ 104 (251)
T TIGR03695 49 RYDFEEAAQDILATLLDQL--GIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGS 104 (251)
T ss_pred hhhHHHHHHHHHHHHHHHc--CCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCC
Confidence 3455555555 44444444 3567999999999999999988766666666666543
No 32
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=97.75 E-value=4.2e-05 Score=48.58 Aligned_cols=50 Identities=18% Similarity=0.318 Sum_probs=41.5
Q ss_pred HHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccccc
Q psy4013 16 ALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQ 68 (69)
Q Consensus 16 al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~ 68 (69)
.+-||++ +|..++++..++|+|.||..+..+++..+..+..++++||.++
T Consensus 102 l~p~i~~---~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~ 151 (251)
T PF00756_consen 102 LIPYIEA---NYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALD 151 (251)
T ss_dssp HHHHHHH---HSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESE
T ss_pred chhHHHH---hcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcccc
Confidence 4455554 3566666699999999999999999999999999999998754
No 33
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=97.72 E-value=0.00016 Score=47.87 Aligned_cols=52 Identities=21% Similarity=0.174 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
.+|+..+++|+++. + .++|+|+|+|.||.++..+....+..+.+.|.+++.+
T Consensus 83 ~~Dv~~ai~~L~~~----~--~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~ 134 (266)
T TIGR03101 83 KEDVAAAYRWLIEQ----G--HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVV 134 (266)
T ss_pred HHHHHHHHHHHHhc----C--CCCEEEEEECHHHHHHHHHHHhCccccceEEEecccc
Confidence 47888888888753 2 4689999999999999988877666777788777654
No 34
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.67 E-value=0.00013 Score=48.20 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=33.9
Q ss_pred HHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecc
Q psy4013 19 WVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQS 64 (69)
Q Consensus 19 wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~s 64 (69)
+++.-...++.++++|+++|||.||+++..+....+.+..+++.+.
T Consensus 99 ~l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LD 144 (275)
T cd00707 99 FLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLD 144 (275)
T ss_pred HHHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEec
Confidence 3343334456788999999999999999999886655666666553
No 35
>PHA02857 monoglyceride lipase; Provisional
Probab=97.60 E-value=0.00032 Score=44.95 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
+.|+...+.++++. ....+++|+|||.||.++..++...+...++.|.+++.+
T Consensus 80 ~~d~~~~l~~~~~~-----~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~ 132 (276)
T PHA02857 80 VRDVVQHVVTIKST-----YPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLV 132 (276)
T ss_pred HHHHHHHHHHHHhh-----CCCCCEEEEEcCchHHHHHHHHHhCccccceEEEecccc
Confidence 45555666555432 224579999999999999888877666778888888754
No 36
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=97.59 E-value=0.00019 Score=50.05 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=41.7
Q ss_pred HHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 16 ALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 16 al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
.+-||+++- .+..|+++..|+|+|.||..+..+.+..+..|..++++||.+
T Consensus 273 LlP~I~~~y-~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 273 LLPQVRAIA-PFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred HHHHHHHhC-CCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 334555432 235689999999999999999999999999999999999865
No 37
>PRK10985 putative hydrolase; Provisional
Probab=97.59 E-value=0.00024 Score=47.36 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCC-Cc-cccceeecccccc
Q psy4013 9 GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP-TV-MPDRIIDQSSWLQ 68 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~-~~-~~~~~i~~sg~~~ 68 (69)
.+.|+..+++|+++. ++ ..+++++|||.||.++..++... .. ...+++.+++.++
T Consensus 113 ~~~D~~~~i~~l~~~---~~--~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~ 169 (324)
T PRK10985 113 ETEDARFFLRWLQRE---FG--HVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLM 169 (324)
T ss_pred chHHHHHHHHHHHHh---CC--CCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCC
Confidence 368999999999864 22 45699999999998766665543 22 4677788887654
No 38
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.54 E-value=0.00025 Score=46.02 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=42.1
Q ss_pred ChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceee
Q psy4013 7 NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIID 62 (69)
Q Consensus 7 n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~ 62 (69)
...+.|...+++|++.+.. +++++|.++|+|.||.+++.+....+ .+++.+.
T Consensus 90 ~~~~~d~~a~~~~L~~~~~---~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~ 141 (236)
T COG0412 90 AEVLADIDAALDYLARQPQ---VDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVA 141 (236)
T ss_pred HHHHHHHHHHHHHHHhCCC---CCCceEEEEEEcccHHHHHHhhcccC-CccEEEE
Confidence 5677899999999997654 89999999999999999999888764 3343433
No 39
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=97.52 E-value=0.0003 Score=45.93 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
..|+..+++++++... ..++|.++|+|.||.++..++..+ ..++++|.+++++
T Consensus 82 ~~d~~~~~~~l~~~~~----g~~~i~l~G~S~Gg~~a~~~a~~~-~~v~~lil~~p~~ 134 (274)
T TIGR03100 82 DADIAAAIDAFREAAP----HLRRIVAWGLCDAASAALLYAPAD-LRVAGLVLLNPWV 134 (274)
T ss_pred HHHHHHHHHHHHhhCC----CCCcEEEEEECHHHHHHHHHhhhC-CCccEEEEECCcc
Confidence 4678888888876421 236799999999999988876543 4677888888875
No 40
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=97.51 E-value=0.00038 Score=46.73 Aligned_cols=53 Identities=4% Similarity=-0.006 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccccc
Q psy4013 11 MDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQ 68 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~ 68 (69)
.|+..+++++.++. ..++++++|||.||.++..++...+..+++.+.+++.++
T Consensus 120 ~~~~~~v~~l~~~~-----~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~ 172 (350)
T TIGR01836 120 GYIDKCVDYICRTS-----KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVD 172 (350)
T ss_pred HHHHHHHHHHHHHh-----CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccc
Confidence 34666777777542 245899999999999999887766666777788777665
No 41
>KOG1552|consensus
Probab=97.49 E-value=0.00026 Score=47.04 Aligned_cols=53 Identities=17% Similarity=0.340 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccccc
Q psy4013 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQ 68 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~ 68 (69)
..|+.++.+|+++. +| .+++|.|.|+|.|+.-+..++...+ .++.|..|++.+
T Consensus 112 y~Di~avye~Lr~~---~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S 164 (258)
T KOG1552|consen 112 YADIKAVYEWLRNR---YG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTS 164 (258)
T ss_pred hhhHHHHHHHHHhh---cC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchh
Confidence 48999999999973 56 8999999999999887666655544 677888887653
No 42
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.48 E-value=0.00022 Score=52.43 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccccC
Q psy4013 9 GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQI 69 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~~ 69 (69)
.+.|-.+|.+++.++- =+++++|.++|-||||.|+.+++-..+.+++++|.+.+++|.
T Consensus 507 Tf~DFIa~a~~Lv~~g---~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDv 564 (682)
T COG1770 507 TFTDFIAAARHLVKEG---YTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDV 564 (682)
T ss_pred cHHHHHHHHHHHHHcC---cCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccch
Confidence 4678888888877532 257899999999999999999999999999999999999873
No 43
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=97.46 E-value=0.00037 Score=41.71 Aligned_cols=36 Identities=17% Similarity=0.054 Sum_probs=30.9
Q ss_pred CcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 32 GNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 32 ~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
++++++|||.||.++..++...+..+++++.+++..
T Consensus 66 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~ 101 (228)
T PF12697_consen 66 KKVILVGHSMGGMIALRLAARYPDRVKGLVLLSPPP 101 (228)
T ss_dssp SSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESESS
T ss_pred ccccccccccccccccccccccccccccceeecccc
Confidence 689999999999999999887667888888887654
No 44
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=97.44 E-value=0.00071 Score=45.23 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccccC
Q psy4013 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQI 69 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~~ 69 (69)
+.|....++-+.+.+..- .-..+++++|||+||.++..++......++++|..|+.+++
T Consensus 86 f~~~~~dl~~~~~~~~~~-~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l 144 (298)
T COG2267 86 FADYVDDLDAFVETIAEP-DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGL 144 (298)
T ss_pred HHHHHHHHHHHHHHHhcc-CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccC
Confidence 444554444444443331 23457999999999999999999888889999999998864
No 45
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=97.44 E-value=0.00063 Score=41.53 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=44.6
Q ss_pred CChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 6 ANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 6 ~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
..+...|....+..+.+ +++.+. ++++|||.||.++..++...+....+++.+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~---~l~~~~--~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~~~~ 78 (230)
T PF00561_consen 23 PDYTTDDLAADLEALRE---ALGIKK--INLVGHSMGGMLALEYAAQYPERVKKLVLISPP 78 (230)
T ss_dssp CTHCHHHHHHHHHHHHH---HHTTSS--EEEEEETHHHHHHHHHHHHSGGGEEEEEEESES
T ss_pred ccccHHHHHHHHHHHHH---HhCCCC--eEEEEECCChHHHHHHHHHCchhhcCcEEEeee
Confidence 34567788888887776 345544 999999999999999999888888888887764
No 46
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=97.42 E-value=0.00052 Score=45.96 Aligned_cols=37 Identities=14% Similarity=0.014 Sum_probs=30.6
Q ss_pred CCCcEEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 30 DPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 30 d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
++.+++|+|||.||.++..+....+....+.|.+++.
T Consensus 160 ~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~ 196 (349)
T PLN02385 160 RGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPM 196 (349)
T ss_pred CCCCEEEEEeccchHHHHHHHHhCcchhhheeEeccc
Confidence 4557999999999999998888777777888877764
No 47
>PRK10749 lysophospholipase L2; Provisional
Probab=97.42 E-value=0.00063 Score=45.36 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=31.2
Q ss_pred CCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 30 DPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 30 d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
+..+++++|||.||.++..++...+..+++.|.+++..
T Consensus 129 ~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~ 166 (330)
T PRK10749 129 PYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMF 166 (330)
T ss_pred CCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchh
Confidence 45789999999999999888887777778888877654
No 48
>KOG2281|consensus
Probab=97.36 E-value=0.00023 Score=52.71 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=51.4
Q ss_pred CccccCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 1 MKARVANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 1 ~~~~~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
||..-|-..++|+..+++|+.+.-. =.|++||.+-|||-||.|+++.+...+.-++.+|+=.+
T Consensus 698 ik~kmGqVE~eDQVeglq~Laeq~g--fidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGap 760 (867)
T KOG2281|consen 698 IKKKMGQVEVEDQVEGLQMLAEQTG--FIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAP 760 (867)
T ss_pred HhhccCeeeehhhHHHHHHHHHhcC--cccchheeEeccccccHHHHHHhhcCcceeeEEeccCc
Confidence 3555677788999999999987543 26999999999999999999999988887777766443
No 49
>KOG4388|consensus
Probab=97.35 E-value=0.00018 Score=52.89 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=42.8
Q ss_pred cCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh
Q psy4013 5 VANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 5 ~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
|=.-+++++.-|..|+-+|.+-.|-..+||.+.|+||||+++..+.+
T Consensus 442 PFPRaleEv~fAYcW~inn~allG~TgEriv~aGDSAGgNL~~~VaL 488 (880)
T KOG4388|consen 442 PFPRALEEVFFAYCWAINNCALLGSTGERIVLAGDSAGGNLCFTVAL 488 (880)
T ss_pred CCCcHHHHHHHHHHHHhcCHHHhCcccceEEEeccCCCcceeehhHH
Confidence 34457899999999999999999999999999999999999988776
No 50
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=97.33 E-value=0.00081 Score=46.74 Aligned_cols=51 Identities=16% Similarity=-0.013 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 14 IAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 14 ~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
..+++|+.+.. ..|++||.++|+|.||.++..+....+.+++++|.+++.+
T Consensus 250 ~avld~l~~~~---~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~ 300 (414)
T PRK05077 250 QAVLNALPNVP---WVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVV 300 (414)
T ss_pred HHHHHHHHhCc---ccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCcc
Confidence 35666666532 3588999999999999999988877666777888887764
No 51
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=97.32 E-value=0.00072 Score=48.24 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccccc
Q psy4013 9 GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQ 68 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~ 68 (69)
..+|+..+++|+.++. + ...+|.++|+|.||.++..++...+...+.++..++..+
T Consensus 78 ~~~D~~~~i~~l~~q~--~--~~~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d 133 (550)
T TIGR00976 78 EAADGYDLVDWIAKQP--W--CDGNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWD 133 (550)
T ss_pred cchHHHHHHHHHHhCC--C--CCCcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccc
Confidence 5689999999998752 2 236899999999999998888876666677777776654
No 52
>COG4099 Predicted peptidase [General function prediction only]
Probab=97.31 E-value=0.00041 Score=47.61 Aligned_cols=52 Identities=8% Similarity=-0.036 Sum_probs=44.2
Q ss_pred HHHHHH-HhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 16 ALHWVQ-QNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 16 al~wi~-~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
.++-+. .-+++++.|.+||++.|.|.||..++++....+..|.+++.++|--
T Consensus 252 ~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~ 304 (387)
T COG4099 252 KIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGG 304 (387)
T ss_pred HHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCC
Confidence 344454 5567799999999999999999999999999899999999999853
No 53
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=97.27 E-value=0.0016 Score=42.92 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=46.0
Q ss_pred cCChhHHHHH-HHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCC---ccccceeecccc
Q psy4013 5 VANYGLMDQI-AALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPT---VMPDRIIDQSSW 66 (69)
Q Consensus 5 ~~n~~~~D~~-~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~---~~~~~~i~~sg~ 66 (69)
..-+.++|+. ..++++++.+..+.....+++++|||-||.++.-++-... ....+.+.+-+.
T Consensus 56 ~~~~sL~~QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPT 121 (266)
T PF10230_consen 56 GRLFSLQDQIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPT 121 (266)
T ss_pred CCccCHHHHHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCc
Confidence 3456777776 5888999888877656778999999999999999887665 344555554443
No 54
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=97.22 E-value=0.0012 Score=40.72 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=33.2
Q ss_pred HHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 19 WVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 19 wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
.+.+.++.. +.+++.++|+|.||.++..++...+....++|.++++
T Consensus 69 ~~~~~i~~~--~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~ 114 (257)
T TIGR03611 69 DVLQLLDAL--NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAW 114 (257)
T ss_pred HHHHHHHHh--CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCC
Confidence 333444443 3567999999999999998887666667777777664
No 55
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=97.22 E-value=0.00066 Score=43.29 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 11 MDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
+=...|++|++++. ..++++|.|+|.|-||-++..++...+ .++.+|..+|.
T Consensus 4 Eyfe~Ai~~L~~~p---~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps 55 (213)
T PF08840_consen 4 EYFEEAIDWLKSHP---EVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPS 55 (213)
T ss_dssp HHHHHHHHHHHCST---TB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--
T ss_pred HHHHHHHHHHHhCC---CCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCc
Confidence 44568999999874 467889999999999999999887655 66777777764
No 56
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=97.17 E-value=0.0016 Score=46.08 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=30.1
Q ss_pred HhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecc
Q psy4013 26 LFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQS 64 (69)
Q Consensus 26 ~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~s 64 (69)
.++.+.+++.|+|||.|||++..+....+.+..+++.+.
T Consensus 113 ~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLD 151 (442)
T TIGR03230 113 EFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLD 151 (442)
T ss_pred hhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEc
Confidence 356688999999999999999998876555555555543
No 57
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=97.17 E-value=0.0013 Score=40.13 Aligned_cols=34 Identities=9% Similarity=-0.015 Sum_probs=26.4
Q ss_pred CCcEEEEecChHHHHHHHHHhCCCccccceeecc
Q psy4013 31 PGNVTMMGHGTGAACINFLMISPTVMPDRIIDQS 64 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~s 64 (69)
.+++.++|||.||.++..++...+..+.+.+.++
T Consensus 78 ~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~ 111 (251)
T TIGR02427 78 IERAVFCGLSLGGLIAQGLAARRPDRVRALVLSN 111 (251)
T ss_pred CCceEEEEeCchHHHHHHHHHHCHHHhHHHhhcc
Confidence 4679999999999999988876655566655554
No 58
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.16 E-value=0.00064 Score=45.34 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=38.2
Q ss_pred hCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 27 FGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 27 ~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
|..|+++..++|||.||..+...+++.+..|.+.+.+|+.+
T Consensus 132 y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSl 172 (264)
T COG2819 132 YRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSL 172 (264)
T ss_pred cccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchh
Confidence 78899999999999999999999999999999999998864
No 59
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=97.15 E-value=0.0015 Score=42.32 Aligned_cols=55 Identities=7% Similarity=-0.046 Sum_probs=39.0
Q ss_pred ChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 7 NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 7 n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
.+.++|....+. +-+++++. +++.++|||.||.++..++...+.++++.|.+++.
T Consensus 82 ~~~~~~~a~~l~---~~l~~l~~--~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~ 136 (294)
T PLN02824 82 FYTFETWGEQLN---DFCSDVVG--DPAFVICNSVGGVVGLQAAVDAPELVRGVMLINIS 136 (294)
T ss_pred cCCHHHHHHHHH---HHHHHhcC--CCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCC
Confidence 355666554432 22333444 67999999999999999998877778888877653
No 60
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=97.14 E-value=0.0012 Score=42.88 Aligned_cols=40 Identities=18% Similarity=0.351 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhC
Q psy4013 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
...+..|++|+++-+.++.+ +|++.|||-||+++.+.+..
T Consensus 65 ~~~q~~A~~yl~~~~~~~~~---~i~v~GHSkGGnLA~yaa~~ 104 (224)
T PF11187_consen 65 TPQQKSALAYLKKIAKKYPG---KIYVTGHSKGGNLAQYAAAN 104 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCC---CEEEEEechhhHHHHHHHHH
Confidence 45677899999988887666 59999999999999998886
No 61
>PRK10673 acyl-CoA esterase; Provisional
Probab=97.11 E-value=0.0014 Score=41.19 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=27.6
Q ss_pred CCcEEEEecChHHHHHHHHHhCCCccccceeecc
Q psy4013 31 PGNVTMMGHGTGAACINFLMISPTVMPDRIIDQS 64 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~s 64 (69)
.+++.++|||.||.++..++...+..+++.+.++
T Consensus 80 ~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~ 113 (255)
T PRK10673 80 IEKATFIGHSMGGKAVMALTALAPDRIDKLVAID 113 (255)
T ss_pred CCceEEEEECHHHHHHHHHHHhCHhhcceEEEEe
Confidence 4569999999999999999887776777766653
No 62
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=97.09 E-value=0.0023 Score=44.95 Aligned_cols=61 Identities=25% Similarity=0.315 Sum_probs=49.8
Q ss_pred CChhH---HHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 6 ANYGL---MDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 6 ~n~~~---~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
.|+|+ .|...|+.++.++...+++ .-+++..|.|-||.++.+..--.+..++.+|.-|++.
T Consensus 156 QN~GIMqAiD~INAl~~l~k~~~~~~~-~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~ 219 (403)
T PF11144_consen 156 QNFGIMQAIDIINALLDLKKIFPKNGG-GLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYA 219 (403)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhcccC-CCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccc
Confidence 46777 5777899999999777765 4478899999999999988887777888888888875
No 63
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=97.06 E-value=0.003 Score=39.44 Aligned_cols=53 Identities=8% Similarity=-0.017 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc-cccceeecccc
Q psy4013 12 DQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV-MPDRIIDQSSW 66 (69)
Q Consensus 12 D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~-~~~~~i~~sg~ 66 (69)
+.....+++.+-+++.+ .++++++|||.||.++..++...+. .+++.+..++.
T Consensus 48 ~~~~~~~~l~~~l~~~~--~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~ 101 (242)
T PRK11126 48 GFADVSRLLSQTLQSYN--ILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGN 101 (242)
T ss_pred CHHHHHHHHHHHHHHcC--CCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCC
Confidence 44555666777776654 4689999999999999998886543 46666665543
No 64
>KOG4409|consensus
Probab=97.05 E-value=0.00071 Score=46.81 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhHHhCC--CCCcEEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 12 DQIAALHWVQQNIALFGG--DPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 12 D~~~al~wi~~~~~~~~~--d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
|-..+..|..+.+++|.- +-++..|+|||.||.+++.+++..+..+...|..|++
T Consensus 138 d~~~~e~~fvesiE~WR~~~~L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~ 194 (365)
T KOG4409|consen 138 DPTTAEKEFVESIEQWRKKMGLEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPW 194 (365)
T ss_pred CcccchHHHHHHHHHHHHHcCCcceeEeeccchHHHHHHHHHhChHhhceEEEeccc
Confidence 334455577777888743 4679999999999999999999988888877877765
No 65
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=97.04 E-value=0.0029 Score=39.89 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 7 NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 7 n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
++.+.+....+..+. +.++ .++++|+|||.||.++..++...+...++.+.+++.
T Consensus 75 ~~~~~~~~~~l~~~i---~~~~--~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~ 129 (278)
T TIGR03056 75 RFTLPSMAEDLSALC---AAEG--LSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAA 129 (278)
T ss_pred CCCHHHHHHHHHHHH---HHcC--CCCceEEEECccHHHHHHHHHhCCcccceEEEEcCc
Confidence 355666655554443 3333 356899999999999998888766666666666553
No 66
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=97.00 E-value=0.0035 Score=43.48 Aligned_cols=53 Identities=23% Similarity=0.176 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCC--ccccceeeccccc
Q psy4013 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPT--VMPDRIIDQSSWL 67 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~--~~~~~~i~~sg~~ 67 (69)
.+|+..+++++... + +..+++++|||.||.++..++..+. ....+.|..|+++
T Consensus 191 ~~Dl~~~l~~l~~~---~--~~~~i~lvGhSmGG~ial~~a~~p~~~~~v~glVL~sP~l 245 (395)
T PLN02652 191 VEDTEAFLEKIRSE---N--PGVPCFLFGHSTGGAVVLKAASYPSIEDKLEGIVLTSPAL 245 (395)
T ss_pred HHHHHHHHHHHHHh---C--CCCCEEEEEECHHHHHHHHHHhccCcccccceEEEECccc
Confidence 56677777777642 1 2247999999999999887766554 2566778777765
No 67
>KOG2112|consensus
Probab=96.98 E-value=0.0034 Score=40.59 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 9 GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
++......+.++-++-...|.+++||.+.|.|.||.++.+..++.+.........||+
T Consensus 70 ~~~~aa~~i~~Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~ 127 (206)
T KOG2112|consen 70 GLHRAADNIANLIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGF 127 (206)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccc
Confidence 4455667778888888888999999999999999999999988775444444555544
No 68
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=96.96 E-value=0.0035 Score=39.08 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
+.+.+....+..+. +.++ .++++++|||.||.++..++...+..+++.+..++
T Consensus 77 ~~~~~~~~~~~~~~---~~~~--~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 129 (288)
T TIGR01250 77 WTIDYFVDELEEVR---EKLG--LDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSM 129 (288)
T ss_pred ccHHHHHHHHHHHH---HHcC--CCcEEEEEeehHHHHHHHHHHhCccccceeeEecc
Confidence 34455444443333 3333 45699999999999999988876666677666554
No 69
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=96.95 E-value=0.0028 Score=36.98 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=25.7
Q ss_pred HHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhC
Q psy4013 16 ALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 16 al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
...++++...++. +.+|.++|||.||.++..+...
T Consensus 50 ~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 50 ILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 4455666555544 5899999999999988877763
No 70
>PLN02511 hydrolase
Probab=96.95 E-value=0.0027 Score=43.65 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCcc--ccceeeccccc
Q psy4013 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVM--PDRIIDQSSWL 67 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~--~~~~i~~sg~~ 67 (69)
.+|+..++++++.. + ...+++++|+|.||.++..++...... ..+.+.+|..+
T Consensus 156 ~~Dl~~~i~~l~~~---~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~ 210 (388)
T PLN02511 156 TGDLRQVVDHVAGR---Y--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPF 210 (388)
T ss_pred hHHHHHHHHHHHHH---C--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCc
Confidence 57888999988753 2 235799999999999998887754443 56666666554
No 71
>PRK03204 haloalkane dehalogenase; Provisional
Probab=96.94 E-value=0.0033 Score=41.12 Aligned_cols=54 Identities=7% Similarity=0.080 Sum_probs=39.8
Q ss_pred ChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 7 NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 7 n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
++.+.|....+.++.+. + +.++++++|||.||.++..++...+.+.++.|.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~---~--~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~ 134 (286)
T PRK03204 81 GYQIDEHARVIGEFVDH---L--GLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNT 134 (286)
T ss_pred ccCHHHHHHHHHHHHHH---h--CCCCEEEEEECccHHHHHHHHHhChhheeEEEEECc
Confidence 35567777777766653 3 346799999999999998888776667777766554
No 72
>PLN02965 Probable pheophorbidase
Probab=96.94 E-value=0.0028 Score=40.42 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=33.4
Q ss_pred HHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 18 HWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 18 ~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
+++.+-++..+.. ++++++|||.||.++..++...+..+.+.|.+++
T Consensus 59 ~dl~~~l~~l~~~-~~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~ 105 (255)
T PLN02965 59 RPLFALLSDLPPD-HKVILVGHSIGGGSVTEALCKFTDKISMAIYVAA 105 (255)
T ss_pred HHHHHHHHhcCCC-CCEEEEecCcchHHHHHHHHhCchheeEEEEEcc
Confidence 4455555554432 5899999999999999888876666666666654
No 73
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=96.91 E-value=0.0024 Score=39.66 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=34.4
Q ss_pred HHHHHhhHHhCCCCCcEEEEecChHHHHHHHHH-hCCCccccceeeccccc
Q psy4013 18 HWVQQNIALFGGDPGNVTMMGHGTGAACINFLM-ISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 18 ~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~-~~~~~~~~~~i~~sg~~ 67 (69)
+|+..--.......++++|+|||.|+..+..++ ........+++..||+-
T Consensus 41 ~W~~~l~~~i~~~~~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~ 91 (171)
T PF06821_consen 41 EWVQALDQAIDAIDEPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFD 91 (171)
T ss_dssp HHHHHHHHCCHC-TTTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--S
T ss_pred HHHHHHHHHHhhcCCCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCC
Confidence 344433333334455699999999999999988 66677888889888863
No 74
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=96.91 E-value=0.0028 Score=43.74 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=28.6
Q ss_pred CCCcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 30 DPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 30 d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
+.++++++|||.||.++..++...+..+.+.|.+++
T Consensus 174 ~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p 209 (402)
T PLN02894 174 NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGP 209 (402)
T ss_pred CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECC
Confidence 456899999999999999988877666666665543
No 75
>PRK03592 haloalkane dehalogenase; Provisional
Probab=96.88 E-value=0.0037 Score=40.54 Aligned_cols=44 Identities=16% Similarity=0.050 Sum_probs=34.2
Q ss_pred HHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 20 VQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 20 i~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
+.+-++.++. ++++++|||.||..+..++...+.+.++.|.+++
T Consensus 83 l~~ll~~l~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~ 126 (295)
T PRK03592 83 LDAWFDALGL--DDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEA 126 (295)
T ss_pred HHHHHHHhCC--CCeEEEEECHHHHHHHHHHHhChhheeEEEEECC
Confidence 3333444444 6799999999999999999888888888888775
No 76
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=96.88 E-value=0.002 Score=40.40 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 9 GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
...|+..+++|++++. ..++++|.++|+|.||.++..++... ..++..+...|
T Consensus 78 ~~~~~~aa~~~l~~~~---~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg 130 (218)
T PF01738_consen 78 VAADLQAAVDYLRAQP---EVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYG 130 (218)
T ss_dssp HHHHHHHHHHHHHCTT---TCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-
T ss_pred HHHHHHHHHHHHHhcc---ccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcC
Confidence 4567778888888654 25789999999999999999887766 45555665554
No 77
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=96.82 E-value=0.0063 Score=39.24 Aligned_cols=51 Identities=18% Similarity=0.265 Sum_probs=33.8
Q ss_pred HHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc---cccceeeccc
Q psy4013 15 AALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV---MPDRIIDQSS 65 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~---~~~~~i~~sg 65 (69)
.+++.+.+....-...+++|.+.|||+||..+-.++..+.. ..+..|.++.
T Consensus 68 ~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~t 121 (225)
T PF07819_consen 68 EAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGT 121 (225)
T ss_pred HHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcC
Confidence 34454444333335678899999999999888887776542 3455565553
No 78
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=96.79 E-value=0.0029 Score=43.79 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=25.6
Q ss_pred CCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 29 GDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 29 ~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
.|.++|.++|||-||..+...+... ..++..|.+-||.
T Consensus 225 lD~~~i~~~GHSFGGATa~~~l~~d-~r~~~~I~LD~W~ 262 (379)
T PF03403_consen 225 LDLSRIGLAGHSFGGATALQALRQD-TRFKAGILLDPWM 262 (379)
T ss_dssp EEEEEEEEEEETHHHHHHHHHHHH--TT--EEEEES---
T ss_pred cchhheeeeecCchHHHHHHHHhhc-cCcceEEEeCCcc
Confidence 3688999999999999888766654 5566777766654
No 79
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=96.79 E-value=0.0031 Score=42.39 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=27.0
Q ss_pred CcEEEEecChHHHHHHHHHhC-CC-------ccccceeecccccc
Q psy4013 32 GNVTMMGHGTGAACINFLMIS-PT-------VMPDRIIDQSSWLQ 68 (69)
Q Consensus 32 ~~i~l~G~SaGa~l~~~~~~~-~~-------~~~~~~i~~sg~~~ 68 (69)
..++++|||.||.++..++.. +. ..+.++|.+||.+.
T Consensus 142 ~p~~l~GhSmGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~ 186 (332)
T TIGR01607 142 LPMYIIGLSMGGNIALRLLELLGKSNENNDKLNIKGCISLSGMIS 186 (332)
T ss_pred CceeEeeccCccHHHHHHHHHhccccccccccccceEEEeccceE
Confidence 459999999999998877642 21 14667788887653
No 80
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=96.74 E-value=0.0055 Score=41.77 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=25.5
Q ss_pred HHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc
Q psy4013 20 VQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV 55 (69)
Q Consensus 20 i~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~ 55 (69)
|..-....+.++++|.|+|||.|||++....-.-..
T Consensus 138 l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~ 173 (331)
T PF00151_consen 138 LSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKG 173 (331)
T ss_dssp HHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT
T ss_pred HHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccC
Confidence 333344678999999999999999999998865443
No 81
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=96.70 E-value=0.0055 Score=40.00 Aligned_cols=54 Identities=7% Similarity=0.003 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
..++|.. +.+.+.+++... .++++|+|||.||..+..++...+..+++.|.+++
T Consensus 67 ~~~~~~~---~~l~~~i~~l~~-~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~ 120 (273)
T PLN02211 67 TTFDEYN---KPLIDFLSSLPE-NEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAA 120 (273)
T ss_pred CCHHHHH---HHHHHHHHhcCC-CCCEEEEEECchHHHHHHHHHhChhheeEEEEecc
Confidence 4454443 334444444432 47899999999999988887765556677777654
No 82
>PRK00870 haloalkane dehalogenase; Provisional
Probab=96.69 E-value=0.0061 Score=39.76 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=33.0
Q ss_pred HHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 18 HWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 18 ~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
+++.+.+++.+ .++++++|||.||.++..++...+.+..+.+.+++
T Consensus 103 ~~l~~~l~~l~--~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 148 (302)
T PRK00870 103 EWMRSWFEQLD--LTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANT 148 (302)
T ss_pred HHHHHHHHHcC--CCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCC
Confidence 33444444444 35799999999999999998877667777766654
No 83
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=96.69 E-value=0.0027 Score=38.63 Aligned_cols=34 Identities=9% Similarity=0.096 Sum_probs=26.7
Q ss_pred CcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 32 GNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 32 ~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
++++++|||.||.++..++...+....+.|.+++
T Consensus 65 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~ 98 (245)
T TIGR01738 65 DPAIWLGWSLGGLVALHIAATHPDRVRALVTVAS 98 (245)
T ss_pred CCeEEEEEcHHHHHHHHHHHHCHHhhheeeEecC
Confidence 6899999999999999888766665666665543
No 84
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=96.63 E-value=0.008 Score=41.63 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=44.0
Q ss_pred ChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccccc
Q psy4013 7 NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQ 68 (69)
Q Consensus 7 n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~ 68 (69)
..++.|...-++++++... ..+..+++++|-|-+|.|+++.....+.++.++++.|++++
T Consensus 90 ~QALaD~a~F~~~~~~~~~--~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 90 EQALADLAYFIRYVKKKYN--TAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTT--TGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred HHHHHHHHHHHHHHHHhhc--CCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 3578888888888884321 23456899999999999999999999999999999999874
No 85
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=96.60 E-value=0.005 Score=39.26 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=29.7
Q ss_pred CCCcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 30 DPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 30 d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
+.+++.+.|||.||.++..++...+..+++.+.+++
T Consensus 99 ~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 134 (282)
T TIGR03343 99 DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGP 134 (282)
T ss_pred CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECC
Confidence 456899999999999999998877667777776654
No 86
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=96.60 E-value=0.003 Score=42.79 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCC
Q psy4013 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~ 53 (69)
+.|+.+|++++.... ..|++||.+.|.|.||.++.+++...
T Consensus 156 ~~D~~ravd~l~slp---evD~~rI~v~G~SqGG~lal~~aaLd 196 (320)
T PF05448_consen 156 YLDAVRAVDFLRSLP---EVDGKRIGVTGGSQGGGLALAAAALD 196 (320)
T ss_dssp HHHHHHHHHHHHTST---TEEEEEEEEEEETHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCC---CcCcceEEEEeecCchHHHHHHHHhC
Confidence 589999999998643 47899999999999999998877643
No 87
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=96.59 E-value=0.0071 Score=36.15 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.9
Q ss_pred CCCcEEEEecChHHHHHHHHHhC
Q psy4013 30 DPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 30 d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
...+|+++|||.||+++..+...
T Consensus 26 p~~~i~v~GHSlGg~lA~l~a~~ 48 (153)
T cd00741 26 PDYKIHVTGHSLGGALAGLAGLD 48 (153)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHH
Confidence 56789999999999999887764
No 88
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=96.56 E-value=0.0067 Score=39.03 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=33.2
Q ss_pred HHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 20 VQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 20 i~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
+.+-++..+ .++++|+|||.||.++..++...+.+.++.|.+++.
T Consensus 81 ~~~~i~~l~--~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~ 125 (276)
T TIGR02240 81 AARMLDYLD--YGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATA 125 (276)
T ss_pred HHHHHHHhC--cCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccC
Confidence 333344443 457999999999999999998877777777776643
No 89
>KOG2237|consensus
Probab=96.45 E-value=0.0037 Score=46.27 Aligned_cols=57 Identities=14% Similarity=0.239 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccccc
Q psy4013 9 GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQ 68 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~ 68 (69)
.+.|-+++.+++.++. =..|++..+-|.||||.++.+..-+.+.+++.+|..-|++|
T Consensus 529 ~f~Dfia~AeyLve~g---yt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmD 585 (712)
T KOG2237|consen 529 SFDDFIACAEYLVENG---YTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMD 585 (712)
T ss_pred cHHHHHHHHHHHHHcC---CCCccceeEecccCccchhHHHhccCchHhhhhhhcCccee
Confidence 4688889999888642 13699999999999999999999999999999999999886
No 90
>PLN02872 triacylglycerol lipase
Probab=96.44 E-value=0.0042 Score=43.21 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc--cccceeeccc
Q psy4013 9 GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV--MPDRIIDQSS 65 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~--~~~~~i~~sg 65 (69)
+..|..++++++.+. ..+++.++|||.||.++...+..|.. +++..+.+++
T Consensus 143 a~~Dl~a~id~i~~~------~~~~v~~VGhS~Gg~~~~~~~~~p~~~~~v~~~~~l~P 195 (395)
T PLN02872 143 ALYDLAEMIHYVYSI------TNSKIFIVGHSQGTIMSLAALTQPNVVEMVEAAALLCP 195 (395)
T ss_pred HHHHHHHHHHHHHhc------cCCceEEEEECHHHHHHHHHhhChHHHHHHHHHHHhcc
Confidence 457888888888753 24689999999999988765544331 3444444444
No 91
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=96.33 E-value=0.01 Score=38.66 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccccc
Q psy4013 9 GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQ 68 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~ 68 (69)
...|..++++|+.+.. -+..||.++|.|.+|......+...+...+.++..++..|
T Consensus 82 e~~D~~d~I~W~~~Qp----ws~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d 137 (272)
T PF02129_consen 82 EAQDGYDTIEWIAAQP----WSNGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSD 137 (272)
T ss_dssp HHHHHHHHHHHHHHCT----TEEEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SB
T ss_pred HHHHHHHHHHHHHhCC----CCCCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCc
Confidence 4689999999999852 3456899999999999999998877776677777776655
No 92
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=96.33 E-value=0.012 Score=38.95 Aligned_cols=46 Identities=13% Similarity=0.064 Sum_probs=32.4
Q ss_pred HHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 18 HWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 18 ~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
+.+.+.++.+ +++++.+.|||.||.++..++...+....+.+.+++
T Consensus 185 ~~~~~~~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~ 230 (371)
T PRK14875 185 AAVLAFLDAL--GIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAP 230 (371)
T ss_pred HHHHHHHHhc--CCccEEEEeechHHHHHHHHHHhCchheeEEEEECc
Confidence 3344444443 456899999999999999888766656666666654
No 93
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=96.25 E-value=0.015 Score=38.26 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecc
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQS 64 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~s 64 (69)
..+.|....+..+. +.++ .+++.++|+|.||.++..+....+...++.|.++
T Consensus 76 ~~~~~~~~dl~~l~---~~l~--~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~ 127 (306)
T TIGR01249 76 NTTWDLVADIEKLR---EKLG--IKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRG 127 (306)
T ss_pred CCHHHHHHHHHHHH---HHcC--CCCEEEEEECHHHHHHHHHHHHChHhhhhheeec
Confidence 34455555444443 3333 4579999999999999998877666666655554
No 94
>PLN02408 phospholipase A1
Probab=96.24 E-value=0.013 Score=40.76 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=28.8
Q ss_pred HHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhC
Q psy4013 16 ALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 16 al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
.++-+++-++++...+.+|+++|||.||.++...+..
T Consensus 184 Vl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~d 220 (365)
T PLN02408 184 VREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYD 220 (365)
T ss_pred HHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHH
Confidence 4455666667777666689999999999999887763
No 95
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=96.20 E-value=0.018 Score=38.64 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCCc-EEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPGN-VTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~~-i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
+.++|....+.-+ +++++. ++ +.++|||.||.++..++...+...++.|.+++.
T Consensus 107 ~~~~~~~~~~~~~---~~~l~~--~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 161 (351)
T TIGR01392 107 ITIRDDVKAQKLL---LDHLGI--EQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATS 161 (351)
T ss_pred CcHHHHHHHHHHH---HHHcCC--CCceEEEEECHHHHHHHHHHHHChHhhheEEEEccC
Confidence 5566666555433 334544 46 999999999999999888776667777666543
No 96
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=96.15 E-value=0.015 Score=37.64 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhC
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
.+..|+.+|+++--+|-. +| ..|+|+|||.|+.+...++-.
T Consensus 75 ~ay~DV~~AF~~yL~~~n--~G--RPfILaGHSQGs~~l~~LL~e 115 (207)
T PF11288_consen 75 LAYSDVRAAFDYYLANYN--NG--RPFILAGHSQGSMHLLRLLKE 115 (207)
T ss_pred hhHHHHHHHHHHHHHhcC--CC--CCEEEEEeChHHHHHHHHHHH
Confidence 567899999987766542 23 459999999999988887753
No 97
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=96.15 E-value=0.014 Score=36.95 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhC--------CCccccceeeccccc
Q psy4013 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMIS--------PTVMPDRIIDQSSWL 67 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~--------~~~~~~~~i~~sg~~ 67 (69)
..+...+++++.+.+.+.|- =..|+|+|.||.+++.++.. ....++-+|.+||+.
T Consensus 83 ~~~~~~sl~~l~~~i~~~GP---fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~ 145 (212)
T PF03959_consen 83 YEGLDESLDYLRDYIEENGP---FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFP 145 (212)
T ss_dssp G---HHHHHHHHHHHHHH------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES---
T ss_pred ccCHHHHHHHHHHHHHhcCC---eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccC
Confidence 46678899999998888553 46799999999999888752 123457788888864
No 98
>PRK10349 carboxylesterase BioH; Provisional
Probab=96.10 E-value=0.0084 Score=37.98 Aligned_cols=35 Identities=11% Similarity=0.250 Sum_probs=28.6
Q ss_pred CCcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 31 PGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
.++++++|||.||.++..++...+...++.|.+.+
T Consensus 73 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~ 107 (256)
T PRK10349 73 PDKAIWLGWSLGGLVASQIALTHPERVQALVTVAS 107 (256)
T ss_pred CCCeEEEEECHHHHHHHHHHHhChHhhheEEEecC
Confidence 57899999999999999998877777777766543
No 99
>PLN02454 triacylglycerol lipase
Probab=96.05 E-value=0.018 Score=40.67 Aligned_cols=36 Identities=14% Similarity=0.293 Sum_probs=27.8
Q ss_pred HHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh
Q psy4013 16 ALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 16 al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
.+..+++..+++...+-+|+++|||.||.++...+.
T Consensus 212 vl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~ 247 (414)
T PLN02454 212 LLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAF 247 (414)
T ss_pred HHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHH
Confidence 456666666677655557999999999999988875
No 100
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=95.95 E-value=0.0096 Score=41.96 Aligned_cols=51 Identities=14% Similarity=0.030 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 14 IAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 14 ~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
..++.|+.+.. -.|.+||.++|.|.||+.+.-++...+.+.++++...+.+
T Consensus 246 ~aVLd~L~~~p---~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~v 296 (411)
T PF06500_consen 246 QAVLDYLASRP---WVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPV 296 (411)
T ss_dssp HHHHHHHHHST---TEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---
T ss_pred HHHHHHHhcCC---ccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchH
Confidence 35678887644 3799999999999999999988877777778888887764
No 101
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=95.94 E-value=0.03 Score=37.02 Aligned_cols=51 Identities=8% Similarity=0.178 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc-----cccceeecccccc
Q psy4013 13 QIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV-----MPDRIIDQSSWLQ 68 (69)
Q Consensus 13 ~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~-----~~~~~i~~sg~~~ 68 (69)
...++.++++ .-.-+++.++|||+||.....++..... ...+.+.+.|.++
T Consensus 89 l~~vl~~L~~-----~Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfn 144 (255)
T PF06028_consen 89 LKKVLKYLKK-----KYHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFN 144 (255)
T ss_dssp HHHHHHHHHH-----CC--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TT
T ss_pred HHHHHHHHHH-----hcCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccC
Confidence 3445555554 2336689999999999998888775432 3467888888774
No 102
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=95.93 E-value=0.025 Score=38.32 Aligned_cols=46 Identities=11% Similarity=0.306 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHhhHHh-----CCCCCcEEEEecChHHHHHHHHHhCC
Q psy4013 8 YGLMDQIAALHWVQQNIALF-----GGDPGNVTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~-----~~d~~~i~l~G~SaGa~l~~~~~~~~ 53 (69)
-.+++....+.|+.+....+ .+|.+++.++|||-||..+..+++..
T Consensus 91 ~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~ 141 (307)
T PF07224_consen 91 DEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGY 141 (307)
T ss_pred HHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcc
Confidence 34677788899999887765 46889999999999999998888754
No 103
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=95.91 E-value=0.0077 Score=42.20 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCC
Q psy4013 11 MDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~ 53 (69)
.|-.+++.|+.... ..|++||.++|+|.||.-++++....
T Consensus 208 ~ddmr~lDfL~slp---eVD~~RIG~~GfSmGg~~a~~LaALD 247 (390)
T PF12715_consen 208 WDDMRALDFLASLP---EVDPDRIGCMGFSMGGYRAWWLAALD 247 (390)
T ss_dssp HHHHHHHHHHCT-T---TEEEEEEEEEEEGGGHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCc---ccCccceEEEeecccHHHHHHHHHcc
Confidence 45556777777543 47999999999999999988887644
No 104
>PRK11071 esterase YqiA; Provisional
Probab=95.89 E-value=0.042 Score=34.29 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=31.4
Q ss_pred HHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 16 ALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 16 al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
+.+++.+-+++++. +++.++|+|.||..+..++...+. +.|.+++.+
T Consensus 47 ~~~~l~~l~~~~~~--~~~~lvG~S~Gg~~a~~~a~~~~~---~~vl~~~~~ 93 (190)
T PRK11071 47 AAELLESLVLEHGG--DPLGLVGSSLGGYYATWLSQCFML---PAVVVNPAV 93 (190)
T ss_pred HHHHHHHHHHHcCC--CCeEEEEECHHHHHHHHHHHHcCC---CEEEECCCC
Confidence 34445555555444 579999999999999988876542 345555543
No 105
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=95.87 E-value=0.032 Score=37.77 Aligned_cols=45 Identities=7% Similarity=0.055 Sum_probs=29.6
Q ss_pred HHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh-CCCccccceeeccc
Q psy4013 19 WVQQNIALFGGDPGNVTMMGHGTGAACINFLMI-SPTVMPDRIIDQSS 65 (69)
Q Consensus 19 wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~-~~~~~~~~~i~~sg 65 (69)
++.+.+++.+. ++++|+|||.||..+..+.. ..+.++++.|.+++
T Consensus 144 ~l~~~l~~l~~--~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~ 189 (360)
T PLN02679 144 LILDFLEEVVQ--KPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNC 189 (360)
T ss_pred HHHHHHHHhcC--CCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECC
Confidence 33334444443 58999999999988876665 34556666666553
No 106
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=95.83 E-value=0.024 Score=37.91 Aligned_cols=46 Identities=11% Similarity=-0.021 Sum_probs=32.4
Q ss_pred HHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 19 WVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 19 wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
.+.+-+++.+.+ +.+.|+|||.||.++..++...+.+..+.|.+++
T Consensus 126 dl~~ll~~l~l~-~~~~lvG~SmGG~vA~~~A~~~P~~V~~LvLi~s 171 (343)
T PRK08775 126 AIALLLDALGIA-RLHAFVGYSYGALVGLQFASRHPARVRTLVVVSG 171 (343)
T ss_pred HHHHHHHHcCCC-cceEEEEECHHHHHHHHHHHHChHhhheEEEECc
Confidence 334444455443 2357999999999999999877777777766654
No 107
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=95.81 E-value=0.03 Score=33.30 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=34.6
Q ss_pred HHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 17 LHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 17 l~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
...+..-...++.++ +.+.|||.||.++..+....+....+.+.+++
T Consensus 75 ~~~~~~~~~~~~~~~--~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~ 121 (282)
T COG0596 75 ADDLAALLDALGLEK--VVLVGHSMGGAVALALALRHPDRVRGLVLIGP 121 (282)
T ss_pred HHHHHHHHHHhCCCc--eEEEEecccHHHHHHHHHhcchhhheeeEecC
Confidence 444555555666665 99999999999999888877666666666654
No 108
>COG1647 Esterase/lipase [General function prediction only]
Probab=95.75 E-value=0.043 Score=36.24 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
++|+..+.+.+++. | -+.|.++|-|.||.++..+..+.+ +++++.+|..
T Consensus 69 ~~~v~d~Y~~L~~~-----g-y~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~ 117 (243)
T COG1647 69 WEDVEDGYRDLKEA-----G-YDEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAP 117 (243)
T ss_pred HHHHHHHHHHHHHc-----C-CCeEEEEeecchhHHHHHHHhhCC--ccceeeecCC
Confidence 46667777777742 2 457999999999999999988665 5556666543
No 109
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=95.65 E-value=0.042 Score=41.30 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=43.6
Q ss_pred ChhHHHHHHHHHHHHHhhHHh-----------CCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 7 NYGLMDQIAALHWVQQNIALF-----------GGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 7 n~~~~D~~~al~wi~~~~~~~-----------~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
.....|...+++|+..+...| .-...+|.++|.|.||.+...++.......+.+|..+++
T Consensus 302 ~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~G~~~~~aAa~~pp~LkAIVp~a~i 372 (767)
T PRK05371 302 YQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSYLGTLPNAVATTGVEGLETIIPEAAI 372 (767)
T ss_pred HHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcHHHHHHHHHHhhCCCcceEEEeeCCC
Confidence 345688999999999753221 123679999999999999998877665555666666554
No 110
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=95.62 E-value=0.052 Score=38.49 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=26.7
Q ss_pred CcEEEEecChHHHHHHHHHhCCCc----cccceeeccccc
Q psy4013 32 GNVTMMGHGTGAACINFLMISPTV----MPDRIIDQSSWL 67 (69)
Q Consensus 32 ~~i~l~G~SaGa~l~~~~~~~~~~----~~~~~i~~sg~~ 67 (69)
.+|.|+|||+||.++..++...+. ..+..|.+++.+
T Consensus 162 ~kV~LVGHSMGGlva~~fl~~~p~~~~k~I~~~I~la~P~ 201 (440)
T PLN02733 162 KKVNIISHSMGGLLVKCFMSLHSDVFEKYVNSWIAIAAPF 201 (440)
T ss_pred CCEEEEEECHhHHHHHHHHHHCCHhHHhHhccEEEECCCC
Confidence 579999999999999877754332 356677777654
No 111
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=95.60 E-value=0.038 Score=38.36 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCCcEE-EEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPGNVT-MMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~~i~-l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
+.+.|...++.-+ +++++. +++. ++|+|.||..+..++...+.+.++.|.+++.
T Consensus 141 ~t~~d~~~~~~~l---l~~lgi--~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~ 195 (389)
T PRK06765 141 VTILDFVRVQKEL---IKSLGI--ARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGN 195 (389)
T ss_pred CcHHHHHHHHHHH---HHHcCC--CCceEEEEECHHHHHHHHHHHHChHhhheEEEEecC
Confidence 3466666555444 344554 4675 9999999999999999888888888777653
No 112
>PLN02802 triacylglycerol lipase
Probab=95.56 E-value=0.032 Score=40.35 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=27.5
Q ss_pred HHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh
Q psy4013 16 ALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 16 al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
.+.-+++..++|.+..-+|+++|||.||.++...+.
T Consensus 314 Vl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~ 349 (509)
T PLN02802 314 VVGEVRRLMEKYKGEELSITVTGHSLGAALALLVAD 349 (509)
T ss_pred HHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHH
Confidence 344455566667766668999999999999988776
No 113
>PLN02578 hydrolase
Probab=95.50 E-value=0.045 Score=36.89 Aligned_cols=34 Identities=6% Similarity=0.009 Sum_probs=27.9
Q ss_pred CCcEEEEecChHHHHHHHHHhCCCccccceeecc
Q psy4013 31 PGNVTMMGHGTGAACINFLMISPTVMPDRIIDQS 64 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~s 64 (69)
.++++++|||.||.++..++...+...++.+.++
T Consensus 151 ~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~ 184 (354)
T PLN02578 151 KEPAVLVGNSLGGFTALSTAVGYPELVAGVALLN 184 (354)
T ss_pred cCCeEEEEECHHHHHHHHHHHhChHhcceEEEEC
Confidence 3679999999999999999987777777766654
No 114
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=95.49 E-value=0.059 Score=39.08 Aligned_cols=56 Identities=18% Similarity=0.062 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHH----HHh-CCCccccceeeccccccC
Q psy4013 9 GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINF----LMI-SPTVMPDRIIDQSSWLQI 69 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~----~~~-~~~~~~~~~i~~sg~~~~ 69 (69)
...++..+++.+.+. ...+++.++|||.||.+++. +.. ..+...+..+.+...+|+
T Consensus 244 ~~~~i~~al~~v~~~-----~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df 304 (532)
T TIGR01838 244 IRDGVIAALEVVEAI-----TGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDF 304 (532)
T ss_pred HHHHHHHHHHHHHHh-----cCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCC
Confidence 334566677777653 24678999999999998633 222 223455666666665553
No 115
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=95.40 E-value=0.016 Score=39.36 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=36.8
Q ss_pred CCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccccc
Q psy4013 28 GGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQ 68 (69)
Q Consensus 28 ~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~ 68 (69)
.-++++-+|+|+|.||..+.+..+..+..|..++++||.++
T Consensus 173 ~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~ 213 (299)
T COG2382 173 SADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFW 213 (299)
T ss_pred cccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccc
Confidence 34677789999999999999999999999999999999863
No 116
>PLN02571 triacylglycerol lipase
Probab=95.39 E-value=0.042 Score=38.82 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=26.8
Q ss_pred HHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh
Q psy4013 15 AALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
+.+.-+++.++++....-+|+++|||.||.++...++
T Consensus 209 qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~ 245 (413)
T PLN02571 209 QVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAV 245 (413)
T ss_pred HHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHH
Confidence 3445555556666554447999999999999988765
No 117
>PLN02324 triacylglycerol lipase
Probab=95.33 E-value=0.045 Score=38.70 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=25.7
Q ss_pred HHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh
Q psy4013 17 LHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 17 l~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
+.-+++.+.+|....-+|+++|||.||.++...+.
T Consensus 200 l~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~ 234 (415)
T PLN02324 200 QGELKRLLELYKNEEISITFTGHSLGAVMSVLSAA 234 (415)
T ss_pred HHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHH
Confidence 34455555566554558999999999999888775
No 118
>PLN02753 triacylglycerol lipase
Probab=95.28 E-value=0.045 Score=39.79 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=28.6
Q ss_pred HHHHHHHHhhHHhCCC---CCcEEEEecChHHHHHHHHHh
Q psy4013 15 AALHWVQQNIALFGGD---PGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d---~~~i~l~G~SaGa~l~~~~~~ 51 (69)
+.+..+++.+.+|..+ .-+|+++|||.||.++...++
T Consensus 292 QVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~ 331 (531)
T PLN02753 292 QILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAY 331 (531)
T ss_pred HHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHH
Confidence 3566677777777553 568999999999999988775
No 119
>COG0627 Predicted esterase [General function prediction only]
Probab=95.22 E-value=0.025 Score=38.50 Aligned_cols=37 Identities=16% Similarity=0.061 Sum_probs=33.6
Q ss_pred CcEEEEecChHHHHHHHHHhCCCccccceeecccccc
Q psy4013 32 GNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQ 68 (69)
Q Consensus 32 ~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~ 68 (69)
++..++|+|+||+-+..+.+..+.++..+.++||+++
T Consensus 152 ~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~ 188 (316)
T COG0627 152 DGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILS 188 (316)
T ss_pred CCceeEEEeccchhhhhhhhhCcchhceecccccccc
Confidence 3899999999999999999988899999999999875
No 120
>PLN02761 lipase class 3 family protein
Probab=95.18 E-value=0.051 Score=39.46 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=27.1
Q ss_pred HHHHHHHhhHHh----CCCCCcEEEEecChHHHHHHHHHh
Q psy4013 16 ALHWVQQNIALF----GGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 16 al~wi~~~~~~~----~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
.+..|++-...| .+...+|+++|||.||.++...++
T Consensus 274 Vl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~ 313 (527)
T PLN02761 274 VLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAY 313 (527)
T ss_pred HHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHH
Confidence 455566666666 345568999999999999988775
No 121
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=95.14 E-value=0.07 Score=33.83 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=19.0
Q ss_pred CCCcEEEEecChHHHHHHHHHhC
Q psy4013 30 DPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 30 d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
...+|.++|||.||.++..+.+.
T Consensus 126 p~~~i~vtGHSLGGaiA~l~a~~ 148 (229)
T cd00519 126 PDYKIIVTGHSLGGALASLLALD 148 (229)
T ss_pred CCceEEEEccCHHHHHHHHHHHH
Confidence 45689999999999988877663
No 122
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=95.03 E-value=0.079 Score=36.73 Aligned_cols=41 Identities=20% Similarity=0.401 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc
Q psy4013 9 GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV 55 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~ 55 (69)
.+.|+...+.|++++ | ..++.+.|-|.||+++++.....+.
T Consensus 158 ~i~E~~~Ll~Wl~~~-----G-~~~~g~~G~SmGG~~A~laa~~~p~ 198 (348)
T PF09752_consen 158 TILESRALLHWLERE-----G-YGPLGLTGISMGGHMAALAASNWPR 198 (348)
T ss_pred HHHHHHHHHHHHHhc-----C-CCceEEEEechhHhhHHhhhhcCCC
Confidence 567888899999975 2 3389999999999999988775444
No 123
>KOG1455|consensus
Probab=95.03 E-value=0.083 Score=36.14 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 9 GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
.+.|+..=+..++.+. ++.+-| .++.|||+||..+..+....+....++|.+++..
T Consensus 109 ~v~D~~~~~~~i~~~~-e~~~lp--~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc 164 (313)
T KOG1455|consen 109 VVDDVISFFDSIKERE-ENKGLP--RFLFGESMGGAVALLIALKDPNFWDGAILVAPMC 164 (313)
T ss_pred HHHHHHHHHHHHhhcc-ccCCCC--eeeeecCcchHHHHHHHhhCCcccccceeeeccc
Confidence 3455555554444322 233333 8999999999999999987666667777766654
No 124
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=94.90 E-value=0.099 Score=35.67 Aligned_cols=54 Identities=13% Similarity=0.029 Sum_probs=36.8
Q ss_pred ChhHHHHHHHHHHHHHhhHHhCCCCCc-EEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 7 NYGLMDQIAALHWVQQNIALFGGDPGN-VTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 7 n~~~~D~~~al~wi~~~~~~~~~d~~~-i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
.+.+.|.... +.+-+++++. ++ +.++|+|.||.++..+....+...++.|.+++
T Consensus 126 ~~~~~~~~~~---~~~~l~~l~~--~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 180 (379)
T PRK00175 126 VITIRDWVRA---QARLLDALGI--TRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIAS 180 (379)
T ss_pred cCCHHHHHHH---HHHHHHHhCC--CCceEEEEECHHHHHHHHHHHhChHhhhEEEEECC
Confidence 3456665543 4444445555 45 58999999999999988877777777666654
No 125
>PLN02719 triacylglycerol lipase
Probab=94.88 E-value=0.068 Score=38.79 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=27.1
Q ss_pred HHHHHHHhhHHhC---CCCCcEEEEecChHHHHHHHHHh
Q psy4013 16 ALHWVQQNIALFG---GDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 16 al~wi~~~~~~~~---~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
.+..+++-..+|. +..-+|+++|||.||.++...++
T Consensus 279 Vl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~ 317 (518)
T PLN02719 279 VLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAY 317 (518)
T ss_pred HHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHH
Confidence 4555666666664 44568999999999999988775
No 126
>PLN02310 triacylglycerol lipase
Probab=94.77 E-value=0.08 Score=37.38 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=25.5
Q ss_pred HHHHHHHhhHHhC--CCCCcEEEEecChHHHHHHHHHh
Q psy4013 16 ALHWVQQNIALFG--GDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 16 al~wi~~~~~~~~--~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
.+.-+++-...+. +...+|+++|||.||.++...+.
T Consensus 191 Vl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~ 228 (405)
T PLN02310 191 VMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAY 228 (405)
T ss_pred HHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHH
Confidence 3444555555554 33458999999999999988775
No 127
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=94.75 E-value=0.12 Score=36.97 Aligned_cols=35 Identities=9% Similarity=0.043 Sum_probs=28.7
Q ss_pred CCcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 31 PGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
.++++++|||.||.++..++...+...++.+.+++
T Consensus 273 ~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~ 307 (481)
T PLN03087 273 VKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAP 307 (481)
T ss_pred CCCEEEEEECHHHHHHHHHHHhChHhccEEEEECC
Confidence 45799999999999999988877667777777664
No 128
>PRK06489 hypothetical protein; Provisional
Probab=94.73 E-value=0.037 Score=37.31 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=35.6
Q ss_pred hhHHHHHHH-HHHHHHhhHHhCCCCCcEE-EEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 8 YGLMDQIAA-LHWVQQNIALFGGDPGNVT-MMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 8 ~~~~D~~~a-l~wi~~~~~~~~~d~~~i~-l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
+.+.|.... +.++.+ +.+. +++. ++|||.||.++..++...+.+.++.|.+++
T Consensus 133 ~~~~~~a~~~~~~l~~---~lgi--~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s 187 (360)
T PRK06489 133 YDYDDMVEAQYRLVTE---GLGV--KHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMAS 187 (360)
T ss_pred ccHHHHHHHHHHHHHH---hcCC--CceeEEEEECHHHHHHHHHHHhCchhhheeeeecc
Confidence 455555532 333332 2333 4664 899999999999999887777777776654
No 129
>KOG4840|consensus
Probab=94.69 E-value=0.049 Score=36.40 Aligned_cols=52 Identities=25% Similarity=0.279 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc--cccceeecccc
Q psy4013 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV--MPDRIIDQSSW 66 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~--~~~~~i~~sg~ 66 (69)
.+|..++++.+.. -+..+.|.|+|||-|+.-+.+++..... ..+.+|.+.++
T Consensus 90 ~edl~~l~~Hi~~-----~~fSt~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApV 143 (299)
T KOG4840|consen 90 VEDLKCLLEHIQL-----CGFSTDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPV 143 (299)
T ss_pred HHHHHHHHHHhhc-----cCcccceEEEecCccchHHHHHHHhccchHHHHHHHHhCcc
Confidence 3566666664431 2345689999999999999988843221 34555666554
No 130
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=94.57 E-value=0.12 Score=32.14 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=17.9
Q ss_pred cEEEEecChHHHHHHHHHhC
Q psy4013 33 NVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 33 ~i~l~G~SaGa~l~~~~~~~ 52 (69)
++.|+|||.||.++..++..
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~ 86 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQ 86 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHH
T ss_pred CeeehccCccHHHHHHHHHH
Confidence 79999999999999888763
No 131
>PF03283 PAE: Pectinacetylesterase
Probab=94.53 E-value=0.089 Score=36.41 Aligned_cols=40 Identities=18% Similarity=0.013 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh
Q psy4013 9 GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
|-.-..++++|+.++ . =.++++|.|.|.||||.-+....-
T Consensus 136 G~~i~~avl~~l~~~--g-l~~a~~vlltG~SAGG~g~~~~~d 175 (361)
T PF03283_consen 136 GYRILRAVLDDLLSN--G-LPNAKQVLLTGCSAGGLGAILHAD 175 (361)
T ss_pred cHHHHHHHHHHHHHh--c-CcccceEEEeccChHHHHHHHHHH
Confidence 455667888998876 1 135899999999999988877664
No 132
>PLN03037 lipase class 3 family protein; Provisional
Probab=94.51 E-value=0.095 Score=38.11 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=24.3
Q ss_pred HHHHHhhHHhC--CCCCcEEEEecChHHHHHHHHHh
Q psy4013 18 HWVQQNIALFG--GDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 18 ~wi~~~~~~~~--~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
.-+++.+..|. +..-+|+++|||.||.++...++
T Consensus 302 ~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~ 337 (525)
T PLN03037 302 EEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAY 337 (525)
T ss_pred HHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHH
Confidence 33444444454 44567999999999999988775
No 133
>PRK07581 hypothetical protein; Validated
Probab=94.46 E-value=0.04 Score=36.59 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=28.7
Q ss_pred CCc-EEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 31 PGN-VTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 31 ~~~-i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
.++ ..|+|+|.||..+..++...+.+.++.|.+++
T Consensus 122 i~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~ 157 (339)
T PRK07581 122 IERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAG 157 (339)
T ss_pred CCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeec
Confidence 357 47999999999999999988777777776654
No 134
>PRK07868 acyl-CoA synthetase; Validated
Probab=94.43 E-value=0.2 Score=38.33 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=27.2
Q ss_pred CcEEEEecChHHHHHHHHHh-CCCccccceeecccccc
Q psy4013 32 GNVTMMGHGTGAACINFLMI-SPTVMPDRIIDQSSWLQ 68 (69)
Q Consensus 32 ~~i~l~G~SaGa~l~~~~~~-~~~~~~~~~i~~sg~~~ 68 (69)
+++.++|+|.||.++..++. .++...++.+.+...+|
T Consensus 141 ~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d 178 (994)
T PRK07868 141 RDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVD 178 (994)
T ss_pred CceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccc
Confidence 46999999999999987765 45546666666555544
No 135
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=94.33 E-value=0.17 Score=35.01 Aligned_cols=38 Identities=13% Similarity=0.234 Sum_probs=29.3
Q ss_pred CCCcEEEEecChHHHHHHHHHhCCCc------cccceeeccccc
Q psy4013 30 DPGNVTMMGHGTGAACINFLMISPTV------MPDRIIDQSSWL 67 (69)
Q Consensus 30 d~~~i~l~G~SaGa~l~~~~~~~~~~------~~~~~i~~sg~~ 67 (69)
+.++|.|+|||.||.++..++..... .+++.|.+++.+
T Consensus 117 ~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~ 160 (389)
T PF02450_consen 117 NGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPF 160 (389)
T ss_pred cCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCC
Confidence 36789999999999999887775422 356778888764
No 136
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=94.29 E-value=0.12 Score=41.83 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
+.+++.... +.+-++.+ ..+++.|+|||.||.++..++...+...++.|.+++
T Consensus 1426 ~si~~~a~~---l~~ll~~l--~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~ 1478 (1655)
T PLN02980 1426 LSVELVADL---LYKLIEHI--TPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISG 1478 (1655)
T ss_pred CCHHHHHHH---HHHHHHHh--CCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECC
Confidence 344444443 33333343 356899999999999999988877777777777765
No 137
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=94.22 E-value=0.09 Score=33.52 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=32.5
Q ss_pred hhHHHHHH-HHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhC
Q psy4013 8 YGLMDQIA-ALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 8 ~~~~D~~~-al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
.+++.+.. .+++|.+.+........+|.++|||.||..+-.+...
T Consensus 53 ~gI~~~g~rL~~eI~~~~~~~~~~~~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 53 DGIDVCGERLAEEILEHIKDYESKIRKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred hhhHHHHHHHHHHHHHhccccccccccceEEEecccHHHHHHHHHH
Confidence 34444443 3467777776666667799999999999998877763
No 138
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=94.18 E-value=0.13 Score=35.60 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc--cccceeeccccccC
Q psy4013 11 MDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV--MPDRIIDQSSWLQI 69 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~--~~~~~i~~sg~~~~ 69 (69)
+|....+.|+++ ..-+.+++.+|.|.||++.+-++..... ....++..|-.+||
T Consensus 132 ~D~~~~l~~l~~-----~~~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl 187 (345)
T COG0429 132 EDIRFFLDWLKA-----RFPPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDL 187 (345)
T ss_pred hHHHHHHHHHHH-----hCCCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHH
Confidence 788999999986 2457789999999999666666554322 45667777766653
No 139
>KOG2564|consensus
Probab=93.96 E-value=0.041 Score=37.67 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=21.4
Q ss_pred hCCCCCcEEEEecChHHHHHHHHHhC
Q psy4013 27 FGGDPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 27 ~~~d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
|+=.+++|+|+|||.||.++......
T Consensus 141 fge~~~~iilVGHSmGGaIav~~a~~ 166 (343)
T KOG2564|consen 141 FGELPPQIILVGHSMGGAIAVHTAAS 166 (343)
T ss_pred hccCCCceEEEeccccchhhhhhhhh
Confidence 55678899999999999998766554
No 140
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=93.87 E-value=0.11 Score=33.77 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCC
Q psy4013 9 GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~ 53 (69)
.++|+..|++|+++.- -+....+|+|+|-|+..++.++...
T Consensus 84 E~~Da~aaldW~~~~h----p~s~~~~l~GfSFGa~Ia~~la~r~ 124 (210)
T COG2945 84 ELEDAAAALDWLQARH----PDSASCWLAGFSFGAYIAMQLAMRR 124 (210)
T ss_pred hHHHHHHHHHHHHhhC----CCchhhhhcccchHHHHHHHHHHhc
Confidence 4689999999999743 2333468999999999888877643
No 141
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=93.81 E-value=0.2 Score=34.71 Aligned_cols=54 Identities=11% Similarity=0.040 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
+.+.+.. +++.+-+++.+. +++.|+|+|.||.++..++...+.++.+.|.+++.
T Consensus 178 ys~~~~a---~~l~~~i~~l~~--~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~ 231 (383)
T PLN03084 178 YTLDEYV---SSLESLIDELKS--DKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPP 231 (383)
T ss_pred CCHHHHH---HHHHHHHHHhCC--CCceEEEECHHHHHHHHHHHhChHhhcEEEEECCC
Confidence 4444444 334444444443 57999999999998888888777777777777654
No 142
>KOG2183|consensus
Probab=93.68 E-value=0.16 Score=36.45 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
.++.|-..-++.++++ .+-....|+.+|-|-||.|++++-+..+-...+++..|.
T Consensus 146 QALADfA~ll~~lK~~---~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSA 200 (492)
T KOG2183|consen 146 QALADFAELLTFLKRD---LSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASA 200 (492)
T ss_pred HHHHHHHHHHHHHhhc---cccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccC
Confidence 4567777778888876 566778899999999999999999877665555555553
No 143
>PLN02847 triacylglycerol lipase
Probab=93.58 E-value=0.17 Score=37.53 Aligned_cols=40 Identities=20% Similarity=0.401 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhHH-----hCCCC-CcEEEEecChHHHHHHHHHhC
Q psy4013 13 QIAALHWVQQNIAL-----FGGDP-GNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 13 ~~~al~wi~~~~~~-----~~~d~-~~i~l~G~SaGa~l~~~~~~~ 52 (69)
...+.+|+.+.+.. +...| -+|.++|||.||.+++.++..
T Consensus 226 ml~AArwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 226 MVAAARWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHHHHHHHHH
Confidence 34555777654321 22233 489999999999888877653
No 144
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=93.53 E-value=0.22 Score=31.70 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=36.5
Q ss_pred HHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 18 HWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 18 ~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
+|+.+--.+....++.++|..||-|+..++...-......++++.+++.
T Consensus 45 dWi~~l~~~v~a~~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVApp 93 (181)
T COG3545 45 DWIARLEKEVNAAEGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPP 93 (181)
T ss_pred HHHHHHHHHHhccCCCeEEEEecccHHHHHHHHHhhhhccceEEEecCC
Confidence 5665555555566666999999999999988887766677777776654
No 145
>KOG3975|consensus
Probab=93.51 E-value=0.23 Score=33.61 Aligned_cols=42 Identities=21% Similarity=0.434 Sum_probs=33.3
Q ss_pred hhHHHHH-HHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCC
Q psy4013 8 YGLMDQI-AALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 8 ~~~~D~~-~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~ 53 (69)
+.++|+. .-+.+++++..+ ..+|+++|||-||.++.-.+...
T Consensus 89 fsL~~QV~HKlaFik~~~Pk----~~ki~iiGHSiGaYm~Lqil~~~ 131 (301)
T KOG3975|consen 89 FSLQDQVDHKLAFIKEYVPK----DRKIYIIGHSIGAYMVLQILPSI 131 (301)
T ss_pred cchhhHHHHHHHHHHHhCCC----CCEEEEEecchhHHHHHHHhhhc
Confidence 3566655 588899987765 67899999999999999888753
No 146
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=93.31 E-value=0.25 Score=31.22 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhC
Q psy4013 13 QIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 13 ~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
...++.-+.+.+.+.. ++++.|+|.|.||..+..+...
T Consensus 42 p~~a~~~l~~~i~~~~--~~~~~liGSSlGG~~A~~La~~ 79 (187)
T PF05728_consen 42 PEEAIAQLEQLIEELK--PENVVLIGSSLGGFYATYLAER 79 (187)
T ss_pred HHHHHHHHHHHHHhCC--CCCeEEEEEChHHHHHHHHHHH
Confidence 3455566666666543 3449999999999999987653
No 147
>PLN00413 triacylglycerol lipase
Probab=93.26 E-value=0.24 Score=35.76 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=18.0
Q ss_pred CCcEEEEecChHHHHHHHHHh
Q psy4013 31 PGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~ 51 (69)
..+|+++|||.||.++...+.
T Consensus 283 ~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 283 TSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred CCeEEEEecCHHHHHHHHHHH
Confidence 457999999999999988764
No 148
>KOG1838|consensus
Probab=93.20 E-value=0.35 Score=34.26 Aligned_cols=54 Identities=6% Similarity=-0.007 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc--cccceeecccccc
Q psy4013 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV--MPDRIIDQSSWLQ 68 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~--~~~~~i~~sg~~~ 68 (69)
.+|...+++++++.- ...+++.+|.|.||.+..-++-.... +..+++.+|-.+|
T Consensus 181 t~Dl~~~v~~i~~~~-----P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd 236 (409)
T KOG1838|consen 181 TEDLREVVNHIKKRY-----PQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWD 236 (409)
T ss_pred HHHHHHHHHHHHHhC-----CCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccch
Confidence 479999999998643 23469999999999999888875433 4556666665554
No 149
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=93.05 E-value=0.38 Score=32.08 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhHHhCCC-CCcEEEEecChHHHHHHHHH
Q psy4013 12 DQIAALHWVQQNIALFGGD-PGNVTMMGHGTGAACINFLM 50 (69)
Q Consensus 12 D~~~al~wi~~~~~~~~~d-~~~i~l~G~SaGa~l~~~~~ 50 (69)
.+..++|-.++.....+.. ..++.+.|+|-||+-+.+..
T Consensus 50 avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA 89 (290)
T PF03583_consen 50 AVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAA 89 (290)
T ss_pred HHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHH
Confidence 3444455444444334443 46899999999999887655
No 150
>KOG3724|consensus
Probab=93.02 E-value=0.22 Score=38.25 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=20.9
Q ss_pred CCcEEEEecChHHHHHHHHHhCCC
Q psy4013 31 PGNVTMMGHGTGAACINFLMISPT 54 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~~~~ 54 (69)
|..|++.|||+||..+...+..+.
T Consensus 181 P~sVILVGHSMGGiVAra~~tlkn 204 (973)
T KOG3724|consen 181 PHSVILVGHSMGGIVARATLTLKN 204 (973)
T ss_pred CceEEEEeccchhHHHHHHHhhhh
Confidence 778999999999999988887663
No 151
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=92.76 E-value=0.35 Score=32.72 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc-----cccceeeccccc
Q psy4013 13 QIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV-----MPDRIIDQSSWL 67 (69)
Q Consensus 13 ~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~-----~~~~~i~~sg~~ 67 (69)
...++.++++ +.+-+.+-+.|||+||.-...++..... .....+.+.|.+
T Consensus 122 lk~~msyL~~-----~Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpf 176 (288)
T COG4814 122 LKKAMSYLQK-----HYNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPF 176 (288)
T ss_pred HHHHHHHHHH-----hcCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccc
Confidence 3445566654 3567789999999999887777764322 345667776665
No 152
>KOG3043|consensus
Probab=92.29 E-value=0.058 Score=35.65 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=44.5
Q ss_pred CccccCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeec
Q psy4013 1 MKARVANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQ 63 (69)
Q Consensus 1 ~~~~~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~ 63 (69)
|++-+.|....|+...++|++. .|++.+|-++|.--||..+..+..... .++++++.
T Consensus 94 ~~~~~~~~~~~~i~~v~k~lk~-----~g~~kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~ 150 (242)
T KOG3043|consen 94 MKGHSPPKIWKDITAVVKWLKN-----HGDSKKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSF 150 (242)
T ss_pred HhcCCcccchhHHHHHHHHHHH-----cCCcceeeEEEEeecceEEEEeeccch-hheeeeEe
Confidence 4667889999999999999993 689999999999999988776665443 44444433
No 153
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=92.18 E-value=0.45 Score=32.44 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=32.2
Q ss_pred HHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCC
Q psy4013 15 AALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPT 54 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~ 54 (69)
.-..|+.+-.++.+.+ +++.++|||-|+-.+..++...+
T Consensus 88 er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~ 126 (297)
T PF06342_consen 88 ERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHP 126 (297)
T ss_pred HHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCc
Confidence 3456788888888887 89999999999999988887653
No 154
>KOG2551|consensus
Probab=92.16 E-value=0.42 Score=31.49 Aligned_cols=51 Identities=18% Similarity=0.084 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCC--------Cccccceeeccccc
Q psy4013 14 IAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP--------TVMPDRIIDQSSWL 67 (69)
Q Consensus 14 ~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~--------~~~~~~~i~~sg~~ 67 (69)
..+++|+.+++.+.|= - =-|.|+|.||.++++++... ...++-+|.+||+.
T Consensus 89 eesl~yl~~~i~enGP-F--DGllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~ 147 (230)
T KOG2551|consen 89 EESLEYLEDYIKENGP-F--DGLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFK 147 (230)
T ss_pred HHHHHHHHHHHHHhCC-C--ccccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCC
Confidence 3567888888877542 1 13789999999999988721 11346678888864
No 155
>KOG2382|consensus
Probab=92.01 E-value=0.33 Score=33.31 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=20.9
Q ss_pred CCCcEEEEecChHH-HHHHHHHhCCCccccce
Q psy4013 30 DPGNVTMMGHGTGA-ACINFLMISPTVMPDRI 60 (69)
Q Consensus 30 d~~~i~l~G~SaGa-~l~~~~~~~~~~~~~~~ 60 (69)
--.++.+.|||+|| .+.++.++..+.+..+.
T Consensus 121 ~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rl 152 (315)
T KOG2382|consen 121 RLDPVVLLGHSMGGVKVAMAETLKKPDLIERL 152 (315)
T ss_pred ccCCceecccCcchHHHHHHHHHhcCccccee
Confidence 35679999999999 66665555555544433
No 156
>KOG3847|consensus
Probab=91.58 E-value=0.085 Score=36.71 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=28.8
Q ss_pred CCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 29 GDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 29 ~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
.|.+++.|+|||-||..+...+ ...+.++.+|..-+|.
T Consensus 238 l~~s~~aViGHSFGgAT~i~~s-s~~t~FrcaI~lD~WM 275 (399)
T KOG3847|consen 238 LDTSQAAVIGHSFGGATSIASS-SSHTDFRCAIALDAWM 275 (399)
T ss_pred hhhhhhhheeccccchhhhhhh-ccccceeeeeeeeeee
Confidence 4678899999999998776544 3466778888777664
No 157
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=91.31 E-value=1.3 Score=32.68 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=33.7
Q ss_pred ChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHH----HHhCCC-ccccceeecccccc
Q psy4013 7 NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINF----LMISPT-VMPDRIIDQSSWLQ 68 (69)
Q Consensus 7 n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~----~~~~~~-~~~~~~i~~sg~~~ 68 (69)
.++++|-...+.-.-+.+.+..| .++|.++|++.||.+++. ++...+ .+.+..+.+...+|
T Consensus 264 ~~~ldDYv~~i~~Ald~V~~~tG-~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplD 329 (560)
T TIGR01839 264 EWGLSTYVDALKEAVDAVRAITG-SRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLD 329 (560)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcC-CCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccc
Confidence 34555544332222223333333 567999999999999886 333333 34555555554444
No 158
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=91.31 E-value=0.55 Score=32.82 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh
Q psy4013 11 MDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
.|-.++++|++++. -|..+++|.+-|||-||...+..+-
T Consensus 196 ~~~~a~v~yL~d~~--~G~ka~~Ii~yG~SLGG~Vqa~AL~ 234 (365)
T PF05677_consen 196 KDYQACVRYLRDEE--QGPKAKNIILYGHSLGGGVQAEALK 234 (365)
T ss_pred HHHHHHHHHHHhcc--cCCChheEEEeeccccHHHHHHHHH
Confidence 44555566665432 3568999999999999988777544
No 159
>PLN02162 triacylglycerol lipase
Probab=90.92 E-value=0.64 Score=33.59 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=17.6
Q ss_pred CCcEEEEecChHHHHHHHHHh
Q psy4013 31 PGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~ 51 (69)
..+++++|||.||.++...+.
T Consensus 277 ~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 277 NLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred CceEEEEecChHHHHHHHHHH
Confidence 458999999999999887643
No 160
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=90.62 E-value=2 Score=27.07 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=24.8
Q ss_pred CCCCCcEEEEecChHHHHHHHHHhCCCcccccee
Q psy4013 28 GGDPGNVTMMGHGTGAACINFLMISPTVMPDRII 61 (69)
Q Consensus 28 ~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i 61 (69)
.+...+++++|||-|...+...+.........++
T Consensus 105 ~~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv 138 (177)
T PF06259_consen 105 HGPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVV 138 (177)
T ss_pred cCCCCCEEEEEecchhHHHHHHhhhCCCCcccEE
Confidence 3667799999999999988887766333444433
No 161
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.54 E-value=0.13 Score=33.15 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=34.2
Q ss_pred CCcEEEEecChHHHHHHHHHhCCCccccceeecccccc
Q psy4013 31 PGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQ 68 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~ 68 (69)
|.+..+.|-|.||..++-+.+..+.++.++|++||++|
T Consensus 100 pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYd 137 (227)
T COG4947 100 PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYD 137 (227)
T ss_pred CCCccccccchhhhhhhhhheeChhHhhhheeecceee
Confidence 45678899999999999999988899999999999986
No 162
>KOG3101|consensus
Probab=90.53 E-value=0.067 Score=35.51 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=28.7
Q ss_pred HHHHHHHHhhHH------hCCCCCcEEEEecChHHHHHHHHHhCCCcc
Q psy4013 15 AALHWVQQNIAL------FGGDPGNVTMMGHGTGAACINFLMISPTVM 56 (69)
Q Consensus 15 ~al~wi~~~~~~------~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~ 56 (69)
+...|+.+...+ .-.||.++.+.|||+|||-+....+....+
T Consensus 118 rMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~k 165 (283)
T KOG3101|consen 118 RMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSK 165 (283)
T ss_pred hHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCccc
Confidence 344555544333 346899999999999999887766655443
No 163
>KOG4391|consensus
Probab=90.47 E-value=0.079 Score=35.35 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=40.3
Q ss_pred cccCChhH-HHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccce
Q psy4013 3 ARVANYGL-MDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRI 60 (69)
Q Consensus 3 ~~~~n~~~-~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~ 60 (69)
+.|.-.|+ -|..++++|+..+. ..|..+|+|.|.|-||..+..++.....+..++
T Consensus 122 GspsE~GL~lDs~avldyl~t~~---~~dktkivlfGrSlGGAvai~lask~~~ri~~~ 177 (300)
T KOG4391|consen 122 GSPSEEGLKLDSEAVLDYLMTRP---DLDKTKIVLFGRSLGGAVAIHLASKNSDRISAI 177 (300)
T ss_pred CCccccceeccHHHHHHHHhcCc---cCCcceEEEEecccCCeeEEEeeccchhheeee
Confidence 34445555 68999999998764 368899999999999988777666554444433
No 164
>KOG4569|consensus
Probab=89.76 E-value=0.57 Score=32.01 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=18.3
Q ss_pred CCcEEEEecChHHHHHHHHHh
Q psy4013 31 PGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~ 51 (69)
.-+|++.|||.||.++...+.
T Consensus 170 ~~~i~vTGHSLGgAlA~laa~ 190 (336)
T KOG4569|consen 170 NYSIWVTGHSLGGALASLAAL 190 (336)
T ss_pred CcEEEEecCChHHHHHHHHHH
Confidence 567999999999999888776
No 165
>PRK05855 short chain dehydrogenase; Validated
Probab=89.75 E-value=1.1 Score=31.32 Aligned_cols=22 Identities=18% Similarity=0.148 Sum_probs=17.1
Q ss_pred CcEEEEecChHHHHHHHHHhCC
Q psy4013 32 GNVTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 32 ~~i~l~G~SaGa~l~~~~~~~~ 53 (69)
.++.|+|||.||..+..+...+
T Consensus 94 ~~~~lvGhS~Gg~~a~~~a~~~ 115 (582)
T PRK05855 94 RPVHLLAHDWGSIQGWEAVTRP 115 (582)
T ss_pred CcEEEEecChHHHHHHHHHhCc
Confidence 3499999999998776665553
No 166
>KOG2984|consensus
Probab=89.64 E-value=0.11 Score=34.29 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceee
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIID 62 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~ 62 (69)
+-.+|...|+.-++. .+.+++.++|||-||..+..++........+.|.
T Consensus 96 ff~~Da~~avdLM~a------Lk~~~fsvlGWSdGgiTalivAak~~e~v~rmii 144 (277)
T KOG2984|consen 96 FFMKDAEYAVDLMEA------LKLEPFSVLGWSDGGITALIVAAKGKEKVNRMII 144 (277)
T ss_pred HHHHhHHHHHHHHHH------hCCCCeeEeeecCCCeEEEEeeccChhhhhhhee
Confidence 345788888887775 6788999999999998777666655555554443
No 167
>PLN02934 triacylglycerol lipase
Probab=89.49 E-value=1.2 Score=32.53 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=17.9
Q ss_pred CCcEEEEecChHHHHHHHHHh
Q psy4013 31 PGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~ 51 (69)
..+|+++|||-||.++...+.
T Consensus 320 ~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 320 NAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred CCeEEEeccccHHHHHHHHHH
Confidence 458999999999999988763
No 168
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=89.38 E-value=1 Score=30.64 Aligned_cols=51 Identities=14% Similarity=0.211 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCC--ccccceeecc
Q psy4013 12 DQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPT--VMPDRIIDQS 64 (69)
Q Consensus 12 D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~--~~~~~~i~~s 64 (69)
...+...++.+-....+. ++|.+.|||.||..+.++.-.-. ...+..+.++
T Consensus 109 ~~~ql~~~V~~~l~~~ga--~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~ 161 (336)
T COG1075 109 RGEQLFAYVDEVLAKTGA--KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLG 161 (336)
T ss_pred cHHHHHHHHHHHHhhcCC--CceEEEeecccchhhHHHHhhcCccceEEEEEEec
Confidence 344455666665555444 78999999999999997776544 3445555444
No 169
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=89.30 E-value=0.22 Score=33.43 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=34.9
Q ss_pred CChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCC
Q psy4013 6 ANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 6 ~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~ 53 (69)
.+++..|...+++|+++.. . ....++.|||.||+....+..++
T Consensus 84 ~DwA~~D~~aal~~~~~~~---~--~~P~y~vgHS~GGqa~gL~~~~~ 126 (281)
T COG4757 84 LDWARLDFPAALAALKKAL---P--GHPLYFVGHSFGGQALGLLGQHP 126 (281)
T ss_pred hhhhhcchHHHHHHHHhhC---C--CCceEEeeccccceeecccccCc
Confidence 4678899999999999754 2 23489999999999988877766
No 170
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=89.24 E-value=0.049 Score=40.29 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHhhHHhCC-CCCcEEEEecChHHHHHHHHHhCCCccccceeecccccc
Q psy4013 9 GLMDQIAALHWVQQNIALFGG-DPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQ 68 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~-d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~ 68 (69)
.+.|-.++.+++.++ |. .|+++.+.|-|.||.|+...+...+.++..++...|.+|
T Consensus 480 vfdDf~AVaedLi~r----gitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllD 536 (648)
T COG1505 480 VFDDFIAVAEDLIKR----GITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLD 536 (648)
T ss_pred hhHHHHHHHHHHHHh----CCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhh
Confidence 467777888777642 33 599999999999999999999988889998888888776
No 171
>KOG1454|consensus
Probab=89.12 E-value=1.2 Score=30.26 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=29.6
Q ss_pred HHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCcccccee
Q psy4013 18 HWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRII 61 (69)
Q Consensus 18 ~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i 61 (69)
.-+.+...++...+ +.++|||.||.++..++...+...+..+
T Consensus 116 ~~i~~~~~~~~~~~--~~lvghS~Gg~va~~~Aa~~P~~V~~lv 157 (326)
T KOG1454|consen 116 ELIRRFVKEVFVEP--VSLVGHSLGGIVALKAAAYYPETVDSLV 157 (326)
T ss_pred HHHHHHHHhhcCcc--eEEEEeCcHHHHHHHHHHhCccccccee
Confidence 33344444555555 9999999999999998887666555444
No 172
>KOG4178|consensus
Probab=88.96 E-value=0.95 Score=31.22 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=32.7
Q ss_pred CCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 31 PGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
-+++++.||.-||.+++.+++..+.+..+.+.+++..
T Consensus 112 ~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~ 148 (322)
T KOG4178|consen 112 LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPF 148 (322)
T ss_pred cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCC
Confidence 7899999999999999999999888888888777653
No 173
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=88.81 E-value=0.91 Score=31.84 Aligned_cols=56 Identities=14% Similarity=0.076 Sum_probs=41.7
Q ss_pred CChhHHHHHHHHHHHHHhhHHhCCCCCcEE-EEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 6 ANYGLMDQIAALHWVQQNIALFGGDPGNVT-MMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 6 ~n~~~~D~~~al~wi~~~~~~~~~d~~~i~-l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
++.-+.|...+-+-+. +.+|.. ++. ++|-|.||..+...+...+...+++|.+++-
T Consensus 125 P~~ti~D~V~aq~~ll---~~LGI~--~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~ 181 (368)
T COG2021 125 PVITIRDMVRAQRLLL---DALGIK--KLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATA 181 (368)
T ss_pred CcccHHHHHHHHHHHH---HhcCcc--eEeeeeccChHHHHHHHHHHhChHHHhhhheeccc
Confidence 5677788887775544 455654 455 8899999999999998888877777776654
No 174
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.50 E-value=0.41 Score=32.76 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh
Q psy4013 11 MDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
.|..+|++-+. .-...|.+||.+.|.|.||.++.....
T Consensus 158 ~D~~~ave~~~---sl~~vde~Ri~v~G~SqGGglalaaaa 195 (321)
T COG3458 158 LDAVRAVEILA---SLDEVDEERIGVTGGSQGGGLALAAAA 195 (321)
T ss_pred HHHHHHHHHHh---ccCccchhheEEeccccCchhhhhhhh
Confidence 35555554333 234579999999999999999887665
No 175
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=88.19 E-value=2.3 Score=27.59 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=27.5
Q ss_pred HHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh
Q psy4013 15 AALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
...+-+.+.+..+....++++++|.|.||..+...+.
T Consensus 31 ~G~~~L~~ai~~~~~~~~~vvV~GySQGA~Va~~~~~ 67 (225)
T PF08237_consen 31 EGVANLDAAIRAAIAAGGPVVVFGYSQGAVVASNVLR 67 (225)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEEECHHHHHHHHHHH
Confidence 4555566666665557888999999999988877654
No 176
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.82 E-value=0.73 Score=30.63 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhhHHhCCCC-CcEEEEecChHHHHHHHHHhC
Q psy4013 10 LMDQIAALHWVQQNIALFGGDP-GNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~-~~i~l~G~SaGa~l~~~~~~~ 52 (69)
+.|+.....-+...+.. -.+ ....+.|||.||.++.-++..
T Consensus 53 ~~di~~Lad~la~el~~--~~~d~P~alfGHSmGa~lAfEvArr 94 (244)
T COG3208 53 LTDIESLADELANELLP--PLLDAPFALFGHSMGAMLAFEVARR 94 (244)
T ss_pred cccHHHHHHHHHHHhcc--ccCCCCeeecccchhHHHHHHHHHH
Confidence 35555555545444432 122 249999999999999988874
No 177
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=87.53 E-value=2.4 Score=26.35 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=18.8
Q ss_pred CCcEEEEecChHHHHHHHHHhC
Q psy4013 31 PGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
..+|.|+|.|.||..+.-++..
T Consensus 80 ~~kivl~GYSQGA~V~~~~~~~ 101 (179)
T PF01083_consen 80 NTKIVLAGYSQGAMVVGDALSG 101 (179)
T ss_dssp TSEEEEEEETHHHHHHHHHHHH
T ss_pred CCCEEEEecccccHHHHHHHHh
Confidence 4589999999999999888765
No 178
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=87.53 E-value=0.96 Score=33.34 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccccc
Q psy4013 9 GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQ 68 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~ 68 (69)
..+|-...++|+.+.. -...+|..+|-|-+|+...+++...+.-.+.++..+|.+|
T Consensus 105 E~~Dg~D~I~Wia~Qp----WsNG~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D 160 (563)
T COG2936 105 EAEDGYDTIEWLAKQP----WSNGNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVD 160 (563)
T ss_pred cccchhHHHHHHHhCC----ccCCeeeeecccHHHHHHHHHHhcCCchheeecccccccc
Confidence 5678999999999844 2355799999999999999999988777777777777665
No 179
>PRK04940 hypothetical protein; Provisional
Probab=87.44 E-value=1.9 Score=27.35 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=24.8
Q ss_pred HHHHHHHHhhHHhC--CCCCcEEEEecChHHHHHHHHHhC
Q psy4013 15 AALHWVQQNIALFG--GDPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 15 ~al~wi~~~~~~~~--~d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
.|+..+.+.+.++- ...+++.|+|.|.||.-+..+...
T Consensus 41 ~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGyyA~~La~~ 80 (180)
T PRK04940 41 HDMQHLLKEVDKMLQLSDDERPLICGVGLGGYWAERIGFL 80 (180)
T ss_pred HHHHHHHHHHHHhhhccCCCCcEEEEeChHHHHHHHHHHH
Confidence 34444555444322 113569999999999999887763
No 180
>KOG4667|consensus
Probab=87.05 E-value=1.8 Score=28.92 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=40.0
Q ss_pred CChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccccC
Q psy4013 6 ANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQI 69 (69)
Q Consensus 6 ~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~~ 69 (69)
.|...+|...+++++.. -+.--=.+.|||-|+..+..+...... ++..|..||.+++
T Consensus 85 ~~~eadDL~sV~q~~s~------~nr~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl 141 (269)
T KOG4667|consen 85 YNTEADDLHSVIQYFSN------SNRVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDL 141 (269)
T ss_pred ccchHHHHHHHHHHhcc------CceEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccch
Confidence 45556888888887764 222223578999999998888775555 5667888887753
No 181
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=86.75 E-value=1.6 Score=31.11 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=17.9
Q ss_pred CCCcEEEEecChHHHHHHHHHh
Q psy4013 30 DPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 30 d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
...+++|+|+|.||+.+-.++.
T Consensus 169 ~~~~~~i~GeSygG~y~p~~a~ 190 (462)
T PTZ00472 169 RANDLFVVGESYGGHYAPATAY 190 (462)
T ss_pred cCCCEEEEeecchhhhHHHHHH
Confidence 3567999999999998866655
No 182
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=86.62 E-value=0.99 Score=31.63 Aligned_cols=42 Identities=26% Similarity=0.221 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHh--hHHhC--CCCCcEEEEecChHHHHHHHHHhC
Q psy4013 11 MDQIAALHWVQQN--IALFG--GDPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 11 ~D~~~al~wi~~~--~~~~~--~d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
.|+...+.++.+. ...++ .|+.||.+.|||-||+.++.+.-.
T Consensus 134 ~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA 179 (365)
T COG4188 134 LDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGA 179 (365)
T ss_pred ccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccc
Confidence 4566666776654 23243 589999999999999988876653
No 183
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=86.56 E-value=3.4 Score=27.96 Aligned_cols=57 Identities=14% Similarity=0.199 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhHHhCC-CCCcEEEEecChHHHHHHHHHhC----C------Cccccceeecccccc
Q psy4013 12 DQIAALHWVQQNIALFGG-DPGNVTMMGHGTGAACINFLMIS----P------TVMPDRIIDQSSWLQ 68 (69)
Q Consensus 12 D~~~al~wi~~~~~~~~~-d~~~i~l~G~SaGa~l~~~~~~~----~------~~~~~~~i~~sg~~~ 68 (69)
+...-.++|++-..+|.- ...+++|.|+|-||+-+-.++.. . ....++++.-+|+++
T Consensus 115 ~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGng~~d 182 (415)
T PF00450_consen 115 AAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGNGWID 182 (415)
T ss_dssp HHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEESE-SB
T ss_pred HHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceecCcccc
Confidence 334455666665555543 34479999999999987666542 1 234456666666654
No 184
>KOG1553|consensus
Probab=86.51 E-value=1.4 Score=31.38 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=28.9
Q ss_pred HHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc
Q psy4013 21 QQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV 55 (69)
Q Consensus 21 ~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~ 55 (69)
+=-+...|..+++|++.|||-||.-+.+.+...+.
T Consensus 300 QfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd 334 (517)
T KOG1553|consen 300 QFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD 334 (517)
T ss_pred HHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC
Confidence 34466789999999999999999999988776544
No 185
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=86.50 E-value=2.5 Score=27.32 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=26.5
Q ss_pred CCCcEEEEecChHHHHHHHHHhC----CC-----ccccceeecccccc
Q psy4013 30 DPGNVTMMGHGTGAACINFLMIS----PT-----VMPDRIIDQSSWLQ 68 (69)
Q Consensus 30 d~~~i~l~G~SaGa~l~~~~~~~----~~-----~~~~~~i~~sg~~~ 68 (69)
...+|.+++||+|+.++...+.. .. ..+..++..++-++
T Consensus 91 ~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid 138 (233)
T PF05990_consen 91 GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDID 138 (233)
T ss_pred CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCC
Confidence 47789999999999888776542 11 13456666666553
No 186
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=85.77 E-value=2.5 Score=29.92 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=39.1
Q ss_pred CChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhC---C--CccccceeeccccccC
Q psy4013 6 ANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMIS---P--TVMPDRIIDQSSWLQI 69 (69)
Q Consensus 6 ~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~---~--~~~~~~~i~~sg~~~~ 69 (69)
+.++++|-.. ++.+-++..|.+ +.++|.+.||.++..++.. . +..++..+.+.+.+|+
T Consensus 148 ~~f~ldDYi~---~l~~~i~~~G~~---v~l~GvCqgG~~~laa~Al~a~~~~p~~~~sltlm~~PID~ 210 (406)
T TIGR01849 148 GKFDLEDYID---YLIEFIRFLGPD---IHVIAVCQPAVPVLAAVALMAENEPPAQPRSMTLMGGPIDA 210 (406)
T ss_pred CCCCHHHHHH---HHHHHHHHhCCC---CcEEEEchhhHHHHHHHHHHHhcCCCCCcceEEEEecCccC
Confidence 6677777763 566555554332 9999999999886654432 1 2247778888888874
No 187
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.97 E-value=2.1 Score=30.21 Aligned_cols=42 Identities=12% Similarity=0.151 Sum_probs=32.5
Q ss_pred cCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh
Q psy4013 5 VANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 5 ~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
+.|+.-.+....++++.+.. ..++|+|+.||+|.-+++..+-
T Consensus 169 S~~~Sr~aLe~~lr~La~~~-----~~~~I~ilAHSMGtwl~~e~Lr 210 (377)
T COG4782 169 STNYSRPALERLLRYLATDK-----PVKRIYLLAHSMGTWLLMEALR 210 (377)
T ss_pred hhhhhHHHHHHHHHHHHhCC-----CCceEEEEEecchHHHHHHHHH
Confidence 45677777888888887643 3678999999999988877654
No 188
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=84.45 E-value=2.8 Score=27.80 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh
Q psy4013 11 MDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
..+..|.+|+.++- -..++|+++|+|-||..+-.+.-
T Consensus 75 ~~I~~ay~~l~~~~----~~gd~I~lfGFSRGA~~AR~~a~ 111 (277)
T PF09994_consen 75 ARIRDAYRFLSKNY----EPGDRIYLFGFSRGAYTARAFAN 111 (277)
T ss_pred HHHHHHHHHHHhcc----CCcceEEEEecCccHHHHHHHHH
Confidence 34556778776554 33556999999999987776653
No 189
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=84.43 E-value=3.7 Score=31.50 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.6
Q ss_pred CCCcEEEEecChHHHHHHHHHhCC
Q psy4013 30 DPGNVTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 30 d~~~i~l~G~SaGa~l~~~~~~~~ 53 (69)
+..+++++|||.||.+...+....
T Consensus 553 ~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 553 DGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred CCCcEEEEecCHHHHHHHHHHHhc
Confidence 467899999999999999888753
No 190
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=81.62 E-value=2.1 Score=31.18 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc---cccceeecccc
Q psy4013 11 MDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV---MPDRIIDQSSW 66 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~---~~~~~i~~sg~ 66 (69)
.|+...++.+.+...++.=..++.+|.|+|-||+=+..++..-.. ...+.+.+|++
T Consensus 177 ~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlssv 235 (498)
T COG2939 177 KDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSSV 235 (498)
T ss_pred hhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHHHhccccCCceEeeee
Confidence 799999999999888888777899999999998766555442222 23444544444
No 191
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=81.50 E-value=2.8 Score=30.62 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=34.0
Q ss_pred hHHHHHH-HHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh
Q psy4013 9 GLMDQIA-ALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 9 ~~~D~~~-al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
|-++-.. -++=|++..+..|.+.++++|.|-|+|..-+.++..
T Consensus 333 Gs~eyE~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga 376 (511)
T TIGR03712 333 GSDEYEQGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGA 376 (511)
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcc
Confidence 3344443 345678889999999999999999999888887765
No 192
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=81.19 E-value=8.3 Score=26.13 Aligned_cols=35 Identities=9% Similarity=0.105 Sum_probs=25.2
Q ss_pred CcEEEEecChHHHHHHHHHhC-CCccccceeecccc
Q psy4013 32 GNVTMMGHGTGAACINFLMIS-PTVMPDRIIDQSSW 66 (69)
Q Consensus 32 ~~i~l~G~SaGa~l~~~~~~~-~~~~~~~~i~~sg~ 66 (69)
+-+.++|+|.||...-.+... +....+..|+++|.
T Consensus 80 ~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlggp 115 (279)
T PF02089_consen 80 NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGGP 115 (279)
T ss_dssp T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES--
T ss_pred cceeeeeeccccHHHHHHHHHCCCCCceeEEEecCc
Confidence 469999999999999888875 33456777888765
No 193
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=80.50 E-value=0.84 Score=31.25 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=14.4
Q ss_pred CCCCcEEEEecChHHHH
Q psy4013 29 GDPGNVTMMGHGTGAAC 45 (69)
Q Consensus 29 ~d~~~i~l~G~SaGa~l 45 (69)
-.|..|+++|+|||||.
T Consensus 9 s~~~g~i~~gds~~ahf 25 (305)
T cd01826 9 SQPMGVILLGDSAGAHF 25 (305)
T ss_pred CCCceEEEecccccccc
Confidence 35778999999999985
No 194
>KOG2624|consensus
Probab=80.05 E-value=1.8 Score=30.67 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc---cccceeecccc
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV---MPDRIIDQSSW 66 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~---~~~~~i~~sg~ 66 (69)
.+..|+-+.+.++-+.- ..+++..+|||.|.......+...+. +.+..+.+++.
T Consensus 142 m~~yDLPA~IdyIL~~T-----~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~ 198 (403)
T KOG2624|consen 142 MGTYDLPAMIDYILEKT-----GQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPA 198 (403)
T ss_pred hhhcCHHHHHHHHHHhc-----cccceEEEEEEccchhheehhcccchhhhhhheeeeecch
Confidence 36778888888887643 57899999999998666555544322 44555555543
No 195
>KOG4540|consensus
Probab=79.98 E-value=1.4 Score=30.73 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.1
Q ss_pred CCcEEEEecChHHHHHHHHHhC
Q psy4013 31 PGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
-.+|.|.|||-||.+++.+..+
T Consensus 275 da~iwlTGHSLGGa~AsLlG~~ 296 (425)
T KOG4540|consen 275 DARIWLTGHSLGGAIASLLGIR 296 (425)
T ss_pred CceEEEeccccchHHHHHhccc
Confidence 4589999999999999988764
No 196
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=79.98 E-value=1.4 Score=30.73 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.1
Q ss_pred CCcEEEEecChHHHHHHHHHhC
Q psy4013 31 PGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
-.+|.|.|||-||.+++.+..+
T Consensus 275 da~iwlTGHSLGGa~AsLlG~~ 296 (425)
T COG5153 275 DARIWLTGHSLGGAIASLLGIR 296 (425)
T ss_pred CceEEEeccccchHHHHHhccc
Confidence 4589999999999999988764
No 197
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=79.91 E-value=2.1 Score=27.81 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=18.9
Q ss_pred HHHHHHHHhhHHhCCCCCcEEEEecChH
Q psy4013 15 AALHWVQQNIALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l~G~SaG 42 (69)
.|++|+.+ +++.+++++.++|+|.=
T Consensus 168 ~Al~~L~~---~~~~~~~~vl~aGDSgN 192 (247)
T PF05116_consen 168 AALRYLME---RWGIPPEQVLVAGDSGN 192 (247)
T ss_dssp HHHHHHHH---HHT--GGGEEEEESSGG
T ss_pred HHHHHHHH---HhCCCHHHEEEEeCCCC
Confidence 67888876 46889999999999953
No 198
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=79.14 E-value=13 Score=25.11 Aligned_cols=36 Identities=28% Similarity=0.540 Sum_probs=27.9
Q ss_pred CcEEEEecChHHHHHHHHHhCCCc-cccceeeccccc
Q psy4013 32 GNVTMMGHGTGAACINFLMISPTV-MPDRIIDQSSWL 67 (69)
Q Consensus 32 ~~i~l~G~SaGa~l~~~~~~~~~~-~~~~~i~~sg~~ 67 (69)
.+|+|+|++.||..+.-++..... .++..|.++.+.
T Consensus 193 ~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~I~a~~ 229 (310)
T PF12048_consen 193 KNIVLIGHGTGAGWAARYLAEKPPPMPDALVLINAYW 229 (310)
T ss_pred ceEEEEEeChhHHHHHHHHhcCCCcccCeEEEEeCCC
Confidence 359999999999999988876554 467777777653
No 199
>KOG2182|consensus
Probab=78.88 E-value=4.2 Score=29.79 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHhhHHhCC-CCCcEEEEecChHHHHHHHHHhCCCccccceeecccccc
Q psy4013 8 YGLMDQIAALHWVQQNIALFGG-DPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQ 68 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~-d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~ 68 (69)
.++.|+...++.+.. +|+. |+.+.+..|-|--|.|+++.....+.+..++++.|+.+.
T Consensus 150 QALaDla~fI~~~n~---k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv~ 208 (514)
T KOG2182|consen 150 QALADLAEFIKAMNA---KFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPVL 208 (514)
T ss_pred HHHHHHHHHHHHHHh---hcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeeccccccee
Confidence 567777766655553 4543 456888889999999999999988888889999998763
No 200
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=76.96 E-value=5.7 Score=25.55 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=20.8
Q ss_pred CCCCCcEEEEecChHHHHHHHHHhC
Q psy4013 28 GGDPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 28 ~~d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
+++...+++.|+|.||-.++++.-.
T Consensus 85 ~l~~gpLi~GGkSmGGR~aSmvade 109 (213)
T COG3571 85 GLAEGPLIIGGKSMGGRVASMVADE 109 (213)
T ss_pred cccCCceeeccccccchHHHHHHHh
Confidence 4666689999999999999887753
No 201
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=76.18 E-value=6 Score=27.95 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh
Q psy4013 11 MDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
..+..|.+++-+|-+- .++|+++|+|-||..+-.++-
T Consensus 105 ~nI~~AYrFL~~~yep----GD~Iy~FGFSRGAf~aRVlag 141 (423)
T COG3673 105 QNIREAYRFLIFNYEP----GDEIYAFGFSRGAFSARVLAG 141 (423)
T ss_pred HHHHHHHHHHHHhcCC----CCeEEEeeccchhHHHHHHHH
Confidence 3455677777665432 457999999999988876654
No 202
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=74.97 E-value=9.7 Score=23.01 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=27.9
Q ss_pred cCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhC
Q psy4013 5 VANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 5 ~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
.+-.++. ..-+++++.++ +..+ =.+.|-|+|+.+++.+...
T Consensus 8 GG~rG~~-~~Gvl~~L~~~----~~~~--d~i~GtSaGal~a~~~a~g 48 (175)
T cd07205 8 GGARGLA-HIGVLKALEEA----GIPI--DIVSGTSAGAIVGALYAAG 48 (175)
T ss_pred hhHHHHH-HHHHHHHHHHc----CCCe--eEEEEECHHHHHHHHHHcC
Confidence 3444554 35667777664 3334 3799999999999888764
No 203
>KOG2369|consensus
Probab=74.49 E-value=13 Score=27.11 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=18.5
Q ss_pred CcEEEEecChHHHHHHHHHhC
Q psy4013 32 GNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 32 ~~i~l~G~SaGa~l~~~~~~~ 52 (69)
++|+|++||+|+.++.+++--
T Consensus 182 kkVvlisHSMG~l~~lyFl~w 202 (473)
T KOG2369|consen 182 KKVVLISHSMGGLYVLYFLKW 202 (473)
T ss_pred CceEEEecCCccHHHHHHHhc
Confidence 579999999999999888764
No 204
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=72.68 E-value=18 Score=23.41 Aligned_cols=20 Identities=20% Similarity=0.546 Sum_probs=17.2
Q ss_pred cEEEEecChHHHHHHHHHhC
Q psy4013 33 NVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 33 ~i~l~G~SaGa~l~~~~~~~ 52 (69)
+|-|+|||.|+.++..+...
T Consensus 76 kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 76 KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp -EEEEEETCHHHHHHHHHHH
T ss_pred EEEEEEcCCcCHHHHHHHHH
Confidence 89999999999999888763
No 205
>PLN02633 palmitoyl protein thioesterase family protein
Probab=72.27 E-value=18 Score=25.03 Aligned_cols=34 Identities=12% Similarity=-0.018 Sum_probs=26.7
Q ss_pred cEEEEecChHHHHHHHHHhCC-C-ccccceeecccc
Q psy4013 33 NVTMMGHGTGAACINFLMISP-T-VMPDRIIDQSSW 66 (69)
Q Consensus 33 ~i~l~G~SaGa~l~~~~~~~~-~-~~~~~~i~~sg~ 66 (69)
-+.++|+|.||...-.+...- . ...+..|+++|.
T Consensus 95 G~naIGfSQGGlflRa~ierc~~~p~V~nlISlggp 130 (314)
T PLN02633 95 GYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAGP 130 (314)
T ss_pred cEEEEEEccchHHHHHHHHHCCCCCCcceEEEecCC
Confidence 599999999999988887653 3 356777888775
No 206
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=71.85 E-value=32 Score=25.72 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=40.4
Q ss_pred CChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCcccc
Q psy4013 6 ANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPD 58 (69)
Q Consensus 6 ~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~ 58 (69)
+-..+.|+..|..-.-+.+.+.+-+..+..|.|...||-.+++++...+.++.
T Consensus 114 pgQTl~DV~~ae~~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~g 166 (581)
T PF11339_consen 114 PGQTLEDVMRAEAAFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVG 166 (581)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCccC
Confidence 34578899988765556666667666699999999999999888886665543
No 207
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=68.81 E-value=18 Score=20.10 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh
Q psy4013 11 MDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
..+..-++|+++...- .| |+++.+.|-|.|=.|++-...
T Consensus 21 ~~V~~qI~yvk~~~~~-~G-pK~VLViGaStGyGLAsRIa~ 59 (78)
T PF12242_consen 21 RNVENQIEYVKSQGKI-NG-PKKVLVIGASTGYGLASRIAA 59 (78)
T ss_dssp HHHHHHHHHHHHC----TS--SEEEEES-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-CC-CceEEEEecCCcccHHHHHHH
Confidence 4566677888875544 33 889999999999777755444
No 208
>PLN02606 palmitoyl-protein thioesterase
Probab=68.67 E-value=23 Score=24.39 Aligned_cols=49 Identities=8% Similarity=-0.022 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhC-CC-ccccceeecccc
Q psy4013 14 IAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMIS-PT-VMPDRIIDQSSW 66 (69)
Q Consensus 14 ~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~-~~-~~~~~~i~~sg~ 66 (69)
..+.+-+++ .++.. +-+.++|+|.||...-.+... +. ...+..|+++|.
T Consensus 81 ~~vce~l~~-~~~L~---~G~naIGfSQGglflRa~ierc~~~p~V~nlISlggp 131 (306)
T PLN02606 81 SIACEKIKQ-MKELS---EGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGGP 131 (306)
T ss_pred HHHHHHHhc-chhhc---CceEEEEEcchhHHHHHHHHHCCCCCCcceEEEecCC
Confidence 344444444 33332 359999999999999888775 34 356777888775
No 209
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=68.39 E-value=22 Score=20.94 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=16.8
Q ss_pred CCcEEEEecChHHHHHHHHHh
Q psy4013 31 PGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~ 51 (69)
..++.++|||.||.++.....
T Consensus 63 ~~~~~l~g~s~Gg~~a~~~a~ 83 (212)
T smart00824 63 GRPFVLVGHSSGGLLAHAVAA 83 (212)
T ss_pred CCCeEEEEECHHHHHHHHHHH
Confidence 346899999999998866555
No 210
>COG3150 Predicted esterase [General function prediction only]
Probab=68.09 E-value=15 Score=23.55 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh
Q psy4013 12 DQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 12 D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
|...|++-+.+-+.+.+.+. ..++|-|-||..+-++..
T Consensus 41 ~p~~a~~ele~~i~~~~~~~--p~ivGssLGGY~At~l~~ 78 (191)
T COG3150 41 DPQQALKELEKAVQELGDES--PLIVGSSLGGYYATWLGF 78 (191)
T ss_pred CHHHHHHHHHHHHHHcCCCC--ceEEeecchHHHHHHHHH
Confidence 56677777777777655443 899999999998887765
No 211
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=67.95 E-value=20 Score=23.06 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=19.4
Q ss_pred HHHhhHHhCCCCCcEEEEecChHHHHHHHHH
Q psy4013 20 VQQNIALFGGDPGNVTMMGHGTGAACINFLM 50 (69)
Q Consensus 20 i~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~ 50 (69)
++.+..+|+. +++.|.|.|-||-..-+..
T Consensus 58 i~~y~~~w~~--~~vvLiGYSFGADvlP~~~ 86 (192)
T PF06057_consen 58 IRHYRARWGR--KRVVLIGYSFGADVLPFIY 86 (192)
T ss_pred HHHHHHHhCC--ceEEEEeecCCchhHHHHH
Confidence 4444455554 5799999999995554443
No 212
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=66.22 E-value=15 Score=23.69 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=25.6
Q ss_pred HHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCC
Q psy4013 16 ALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPT 54 (69)
Q Consensus 16 al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~ 54 (69)
+++++.+ .+..++.-.+.|-||||..++.+.....
T Consensus 17 Vl~~L~e----~gi~~~~~~i~G~SAGAl~aa~~asg~~ 51 (233)
T cd07224 17 VLSLLIE----AGVINETTPLAGASAGSLAAACSASGLS 51 (233)
T ss_pred HHHHHHH----cCCCCCCCEEEEEcHHHHHHHHHHcCCC
Confidence 4455554 3565666789999999999998887544
No 213
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=65.39 E-value=27 Score=24.34 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=23.3
Q ss_pred CcEEEEecChHHHHHHHHHhCCCc-----cccceeeccccc
Q psy4013 32 GNVTMMGHGTGAACINFLMISPTV-----MPDRIIDQSSWL 67 (69)
Q Consensus 32 ~~i~l~G~SaGa~l~~~~~~~~~~-----~~~~~i~~sg~~ 67 (69)
.+|+|+|||.|+-.+...+..-.. ....++.+.+++
T Consensus 220 RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv 260 (345)
T PF05277_consen 220 RPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPV 260 (345)
T ss_pred CceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCCC
Confidence 349999999999887776653221 234555555443
No 214
>PRK01253 preprotein translocase subunit SecG; Reviewed
Probab=64.36 E-value=4.8 Score=20.73 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=34.8
Q ss_pred ccCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhC
Q psy4013 4 RVANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 4 ~~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
+...-++.--.--++|-.+.......+|..|..++-.-++.......+.
T Consensus 4 k~~~~g~~ssAGL~ryy~ed~~~iKi~P~~Vi~~~~~~~~~v~~L~~~~ 52 (54)
T PRK01253 4 KKEGGGLMSSAGLIRYFEEETEAIKIDPKTVIAIGLALGIFVLVLNALF 52 (54)
T ss_pred ccCCCCCcccchhhhhhhcccCccccCCeeeeeeHHHHHHHHHHHHhhc
Confidence 3344445555566788888888888999999999887777666655443
No 215
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=64.12 E-value=7.3 Score=20.39 Aligned_cols=17 Identities=29% Similarity=0.624 Sum_probs=14.5
Q ss_pred hHHhCCCCCcEEEEecC
Q psy4013 24 IALFGGDPGNVTMMGHG 40 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~S 40 (69)
..+++.++++++++|+|
T Consensus 14 ~~~~~~~~~~~~~VGD~ 30 (75)
T PF13242_consen 14 LKRLGVDPSRCVMVGDS 30 (75)
T ss_dssp HHHHTSGGGGEEEEESS
T ss_pred HHHcCCCHHHEEEEcCC
Confidence 34568899999999999
No 216
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=63.88 E-value=19 Score=21.77 Aligned_cols=32 Identities=9% Similarity=0.186 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhHHhCCCCCcEEEEecChH
Q psy4013 11 MDQIAALHWVQQNIALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaG 42 (69)
.+...-++.+++-++++|..|+||-..=.||.
T Consensus 74 ~ka~rR~~~lke~l~elgie~eRv~~~wiSa~ 105 (132)
T COG1908 74 YKAKRRMELLKELLKELGIEPERVRVLWISAA 105 (132)
T ss_pred hHHHHHHHHHHHHHHHhCCCcceEEEEEEehh
Confidence 35667788999999999999999999988886
No 217
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.38 E-value=6.7 Score=26.11 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=17.6
Q ss_pred cEEEEecChHHHHHHHHHhC
Q psy4013 33 NVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 33 ~i~l~G~SaGa~l~~~~~~~ 52 (69)
.+.|.|+|.||.++.-++..
T Consensus 66 Py~L~G~S~GG~vA~evA~q 85 (257)
T COG3319 66 PYVLLGWSLGGAVAFEVAAQ 85 (257)
T ss_pred CEEEEeeccccHHHHHHHHH
Confidence 59999999999999887764
No 218
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=63.36 E-value=14 Score=24.17 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=22.9
Q ss_pred HHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCC
Q psy4013 15 AALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPT 54 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~ 54 (69)
-+++.+.++.... .++ .+.|-||||..++.++....
T Consensus 17 GVl~aL~e~g~~~--~~d--~i~GtSAGAl~aa~~a~g~~ 52 (245)
T cd07218 17 GVAVCLKKYAPHL--LLN--KISGASAGALAACCLLCDLP 52 (245)
T ss_pred HHHHHHHHhCccc--CCC--eEEEEcHHHHHHHHHHhCCc
Confidence 3556666543211 122 29999999999998877543
No 219
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=63.10 E-value=24 Score=27.30 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCC-----cEEEE---------ecChHHHHHHHHHh
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPG-----NVTMM---------GHGTGAACINFLMI 51 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~-----~i~l~---------G~SaGa~l~~~~~~ 51 (69)
..=+-...|+.|++.++.+|+.+++ .|++= |-|||..++.++..
T Consensus 635 VMKESa~~A~s~vrs~a~~~~i~~~~fek~dIHiHVPeGAtPKDGPSAGitm~TAlvS 692 (782)
T COG0466 635 VMKESAQAALSYVRSRAEKLGIDPDFFEKRDIHIHVPEGATPKDGPSAGITMATALVS 692 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccccceEEECCCCCCCCCCcchHHHHHHHHHH
Confidence 3345677899999999999999763 35553 89999877665543
No 220
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=62.94 E-value=25 Score=26.65 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=17.8
Q ss_pred CCcEEEEecChHHHHHHHHHh
Q psy4013 31 PGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~ 51 (69)
.++|+|.|||.|+..+..++-
T Consensus 212 gkKVVLV~HSMGglv~lyFL~ 232 (642)
T PLN02517 212 GKKVVVVPHSMGVLYFLHFMK 232 (642)
T ss_pred CCeEEEEEeCCchHHHHHHHH
Confidence 457999999999988887665
No 221
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=62.54 E-value=18 Score=23.18 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=22.5
Q ss_pred HHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhC
Q psy4013 15 AALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
-+++.+.++ +..++ .+.|-|+||.+++.++..
T Consensus 17 GvL~aL~e~----gi~~~--~i~GtSaGAi~aa~~a~g 48 (221)
T cd07210 17 GFLAALLEM----GLEPS--AISGTSAGALVGGLFASG 48 (221)
T ss_pred HHHHHHHHc----CCCce--EEEEeCHHHHHHHHHHcC
Confidence 345555543 44443 699999999999888864
No 222
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=62.42 E-value=40 Score=22.60 Aligned_cols=22 Identities=18% Similarity=0.063 Sum_probs=17.3
Q ss_pred cEEEEecChHHHHHHHHHhCCC
Q psy4013 33 NVTMMGHGTGAACINFLMISPT 54 (69)
Q Consensus 33 ~i~l~G~SaGa~l~~~~~~~~~ 54 (69)
.++=.|||.|+.+-+.......
T Consensus 91 P~~~vGHSlGcklhlLi~s~~~ 112 (250)
T PF07082_consen 91 PVYGVGHSLGCKLHLLIGSLFD 112 (250)
T ss_pred CeeeeecccchHHHHHHhhhcc
Confidence 4778999999998888765443
No 223
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=61.95 E-value=17 Score=24.47 Aligned_cols=39 Identities=8% Similarity=0.003 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh
Q psy4013 11 MDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
.|...+|+-..+.-++| ....++|.|+|-|||-+-.++.
T Consensus 32 ~d~~~fL~~Ff~~~p~~--~~~~fyI~GESYaG~YiP~la~ 70 (319)
T PLN02213 32 KRTHEFLQKWLSRHPQY--FSNPLYVVGDSYSGMIVPALVQ 70 (319)
T ss_pred HHHHHHHHHHHHhCccc--ccCCeEEEeeccccchHHHHHH
Confidence 55555553333333343 4556999999999987666554
No 224
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=61.21 E-value=28 Score=21.19 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=26.6
Q ss_pred CChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhC
Q psy4013 6 ANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 6 ~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
|..|+.- .-+++.+.++ +..+ =.+.|-|+||.+++.++..
T Consensus 8 G~rG~~~-~Gvl~~L~e~----~~~~--d~i~GtSaGai~aa~~a~g 47 (194)
T cd07207 8 GAKGIAY-IGALKALEEA----GILK--KRVAGTSAGAITAALLALG 47 (194)
T ss_pred hHHHHHH-HHHHHHHHHc----CCCc--ceEEEECHHHHHHHHHHcC
Confidence 3444443 3556666554 3444 5789999999999888874
No 225
>PLN02382 probable sucrose-phosphatase
Probab=59.80 E-value=12 Score=26.29 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=22.6
Q ss_pred HHHHHHHHhhHHhCCCCCcEEEEecChH
Q psy4013 15 AALHWVQQNIALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l~G~SaG 42 (69)
.|++|+.++....+.+++++..+|+|.=
T Consensus 178 ~Al~~L~~~~~~~gi~~~~~iafGDs~N 205 (413)
T PLN02382 178 QALAYLLKKLKAEGKAPVNTLVCGDSGN 205 (413)
T ss_pred HHHHHHHHHhhhcCCChhcEEEEeCCHH
Confidence 5788888766556899999999999943
No 226
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=57.55 E-value=31 Score=25.05 Aligned_cols=25 Identities=8% Similarity=0.210 Sum_probs=19.9
Q ss_pred CCcEEEEecChHHHHHHHHHhCCCc
Q psy4013 31 PGNVTMMGHGTGAACINFLMISPTV 55 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~~~~~ 55 (69)
.++|.+.|++.||.+++.....-+.
T Consensus 180 ~~~InliGyCvGGtl~~~ala~~~~ 204 (445)
T COG3243 180 QKDINLIGYCVGGTLLAAALALMAA 204 (445)
T ss_pred ccccceeeEecchHHHHHHHHhhhh
Confidence 4689999999999988877765443
No 227
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=57.18 E-value=30 Score=24.85 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=35.6
Q ss_pred hCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccccc
Q psy4013 27 FGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWL 67 (69)
Q Consensus 27 ~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~ 67 (69)
|+-.|++-+..|-|-||.-.+..+...+..++++|.-++-+
T Consensus 110 Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~ 150 (474)
T PF07519_consen 110 YGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAI 150 (474)
T ss_pred hCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchH
Confidence 57789999999999999999999999888888888766544
No 228
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=56.09 E-value=32 Score=23.66 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=24.5
Q ss_pred HHHHHHHhhHHhCCCCCcE-----EEEecChHHHHHHHHHhC
Q psy4013 16 ALHWVQQNIALFGGDPGNV-----TMMGHGTGAACINFLMIS 52 (69)
Q Consensus 16 al~wi~~~~~~~~~d~~~i-----~l~G~SaGa~l~~~~~~~ 52 (69)
.|+.+.+...+..+...+| .++|-|+||.+++.++..
T Consensus 22 iL~~lE~~l~~~~g~~~~i~~~FDliaGTStGgiiA~~la~~ 63 (349)
T cd07214 22 ILEFLEGKLQELDGPDARIADYFDVIAGTSTGGLITAMLTAP 63 (349)
T ss_pred HHHHHHHHHHHhcCCCCCHhHhCCEEeeCCHHHHHHHHHhcC
Confidence 4555666555444422232 688999999999988863
No 229
>PHA01735 hypothetical protein
Probab=55.97 E-value=11 Score=20.59 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=16.0
Q ss_pred ccCChhHHHHHHHHHHHHHh
Q psy4013 4 RVANYGLMDQIAALHWVQQN 23 (69)
Q Consensus 4 ~~~n~~~~D~~~al~wi~~~ 23 (69)
.++-....|..+|..|+++|
T Consensus 26 ksgeATtaDL~AA~d~Lk~N 45 (76)
T PHA01735 26 KSGEATTADLRAACDWLKSN 45 (76)
T ss_pred hcCcccHHHHHHHHHHHHHC
Confidence 34556678999999999976
No 230
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=55.77 E-value=32 Score=26.91 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=17.3
Q ss_pred CcEEEEecChHHHHHHHHHh
Q psy4013 32 GNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 32 ~~i~l~G~SaGa~l~~~~~~ 51 (69)
.++.+.|||.||..+..+..
T Consensus 1133 ~p~~l~G~S~Gg~vA~e~A~ 1152 (1296)
T PRK10252 1133 GPYHLLGYSLGGTLAQGIAA 1152 (1296)
T ss_pred CCEEEEEechhhHHHHHHHH
Confidence 46999999999998888766
No 231
>KOG0979|consensus
Probab=54.97 E-value=11 Score=30.00 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=27.0
Q ss_pred CChhHHHHHHHHHHHHHhhHHhCCC---CCcEEEEecChH
Q psy4013 6 ANYGLMDQIAALHWVQQNIALFGGD---PGNVTMMGHGTG 42 (69)
Q Consensus 6 ~n~~~~D~~~al~wi~~~~~~~~~d---~~~i~l~G~SaG 42 (69)
.+.+..|++.|+.|+++|-++|..+ |.=+.+---.++
T Consensus 425 l~~~~~d~~dAy~wlrenr~~FK~~vyeP~~m~l~~k~~~ 464 (1072)
T KOG0979|consen 425 LRQGSSDAYDAYQWLRENRSEFKDEVYEPPIMTLNVKNAE 464 (1072)
T ss_pred hccCchHHHHHHHHHHHCHHHhcccccCCceEEEecCChH
Confidence 4567899999999999999999875 333444444444
No 232
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=54.05 E-value=36 Score=23.47 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=25.5
Q ss_pred HHHHHHHHhhHHhCCCCC-c-----EEEEecChHHHHHHHHHh
Q psy4013 15 AALHWVQQNIALFGGDPG-N-----VTMMGHGTGAACINFLMI 51 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~-~-----i~l~G~SaGa~l~~~~~~ 51 (69)
..++.+.+...+..++|+ + =.++|-|.||.+++.+..
T Consensus 18 gvL~~LE~~l~~~~~~p~~~l~d~FDlIaGTStGgIIAa~la~ 60 (344)
T cd07217 18 EILGRIEKDLRTHLDDPEFRLGDYFDFVGGTSTGSIIAACIAL 60 (344)
T ss_pred HHHHHHHHHhhhccCCccccccccccEEEEecHHHHHHHHHHc
Confidence 455666666655545542 2 268899999999998875
No 233
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=53.99 E-value=44 Score=19.65 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChH
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaG 42 (69)
.|-.....-+..+++-.++.|.+|+||.+.--|++
T Consensus 70 ~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~~ 104 (124)
T PF02662_consen 70 EGNYRAEKRVERLKKLLEELGIEPERVRLYWISAP 104 (124)
T ss_pred hhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCcc
Confidence 45567778888999999999999999999665554
No 234
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=53.25 E-value=15 Score=25.47 Aligned_cols=38 Identities=5% Similarity=0.059 Sum_probs=30.3
Q ss_pred cccCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecC
Q psy4013 3 ARVANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHG 40 (69)
Q Consensus 3 ~~~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~S 40 (69)
..+.+...+.+..+++.+.+....|+....||.|.|-.
T Consensus 174 ~V~~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~GLN 211 (332)
T PRK03743 174 KACDYVTKERVLDYIQRCTKALEKLGIKNPKIAVAGLN 211 (332)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeC
Confidence 34455566777888888888888899998999999965
No 235
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=52.84 E-value=15 Score=25.37 Aligned_cols=38 Identities=5% Similarity=-0.013 Sum_probs=30.3
Q ss_pred cccCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecC
Q psy4013 3 ARVANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHG 40 (69)
Q Consensus 3 ~~~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~S 40 (69)
..+.+.-.+.+..+++.+.+....|+....||.|.|-.
T Consensus 173 ~V~~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLN 210 (326)
T PRK03371 173 KFLDTLNTARVETVIGIADTFLKRVGYVKPRIAVAGVN 210 (326)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeC
Confidence 34455666778888888888888899998999999965
No 236
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=50.40 E-value=44 Score=22.55 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=24.3
Q ss_pred HHHHHHHHhhHHhCCCCC-cE-----EEEecChHHHHHHHHHh
Q psy4013 15 AALHWVQQNIALFGGDPG-NV-----TMMGHGTGAACINFLMI 51 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~-~i-----~l~G~SaGa~l~~~~~~ 51 (69)
..++.+.+.+.+..++|+ ++ .++|-|+||.+++.++.
T Consensus 17 ~iL~~le~~l~~~~g~~~~~i~~~fDli~GTStGgiia~~l~~ 59 (329)
T cd07215 17 TILVSVEEKLQKKTGNPEARLADYFDLVAGTSTGGILTCLYLC 59 (329)
T ss_pred HHHHHHHHHHhhhcCCCCCcHhhccCeeeccCHHHHHHHHHhC
Confidence 345566666555445542 23 68899999999887653
No 237
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=50.35 E-value=21 Score=21.66 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=26.5
Q ss_pred CChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCC
Q psy4013 6 ANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 6 ~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~ 53 (69)
+..|+.. .-+++.+.++ +.++ =.+.|-|+||..++.+....
T Consensus 9 G~rG~~~-~Gvl~~L~e~----g~~~--d~i~GtSaGAi~aa~~a~g~ 49 (175)
T cd07228 9 GARGWAH-IGVLRALEEE----GIEI--DIIAGSSIGALVGALYAAGH 49 (175)
T ss_pred HHHHHHH-HHHHHHHHHC----CCCe--eEEEEeCHHHHHHHHHHcCC
Confidence 3344442 4456666554 3333 57889999999998887653
No 238
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=49.85 E-value=33 Score=22.24 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=18.0
Q ss_pred hHHhCCCCCcEEEEecChHHHHHHHHH
Q psy4013 24 IALFGGDPGNVTMMGHGTGAACINFLM 50 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaGa~l~~~~~ 50 (69)
..++|..|+ .++|||.|-..++++.
T Consensus 76 l~~~Gi~p~--~~~GhSlGE~aA~~~a 100 (298)
T smart00827 76 WRSWGVRPD--AVVGHSLGEIAAAYVA 100 (298)
T ss_pred HHHcCCccc--EEEecCHHHHHHHHHh
Confidence 345777774 8999999976665544
No 239
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=49.51 E-value=17 Score=25.24 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=29.2
Q ss_pred ccCChhHHHHHHHHHHHHHhhH-HhCCCCCcEEEEecC
Q psy4013 4 RVANYGLMDQIAALHWVQQNIA-LFGGDPGNVTMMGHG 40 (69)
Q Consensus 4 ~~~n~~~~D~~~al~wi~~~~~-~~~~d~~~i~l~G~S 40 (69)
.+.+.-.+.+..+++.+.+... +||....||.|.|-.
T Consensus 179 V~~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLN 216 (336)
T PRK05312 179 VPAALTPELIVATARITAADLRRRFGIASPRLAVAGLN 216 (336)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeeC
Confidence 3445556777788888888877 799998899999966
No 240
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=48.36 E-value=39 Score=23.99 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=19.4
Q ss_pred hCCCCCcEEEEecChHHHHHHHHHhCC
Q psy4013 27 FGGDPGNVTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 27 ~~~d~~~i~l~G~SaGa~l~~~~~~~~ 53 (69)
.+..|+ .+.|-|+||..++.++...
T Consensus 98 ~gl~p~--vIsGTSaGAivAal~as~~ 122 (421)
T cd07230 98 ANLLPR--IISGSSAGSIVAAILCTHT 122 (421)
T ss_pred cCCCCC--EEEEECHHHHHHHHHHcCC
Confidence 355664 6999999999998887743
No 241
>KOG2541|consensus
Probab=48.30 E-value=69 Score=22.04 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=26.7
Q ss_pred CCcEEEEecChHHHHHHHHHhC-CCccccceeecccc
Q psy4013 31 PGNVTMMGHGTGAACINFLMIS-PTVMPDRIIDQSSW 66 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~~-~~~~~~~~i~~sg~ 66 (69)
++-+.++|.|.|+..+-.+... +..+.+..|+++|.
T Consensus 91 sqGynivg~SQGglv~Raliq~cd~ppV~n~ISL~gP 127 (296)
T KOG2541|consen 91 SQGYNIVGYSQGGLVARALIQFCDNPPVKNFISLGGP 127 (296)
T ss_pred cCceEEEEEccccHHHHHHHHhCCCCCcceeEeccCC
Confidence 5669999999999888877653 44455667777764
No 242
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=47.89 E-value=43 Score=19.12 Aligned_cols=22 Identities=14% Similarity=0.416 Sum_probs=17.4
Q ss_pred HHhhHHhCCCCCcEEEEecChH
Q psy4013 21 QQNIALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 21 ~~~~~~~~~d~~~i~l~G~SaG 42 (69)
+.-+.+++.+|+++.++|+|..
T Consensus 140 ~~~~~~~~~~p~~~~~vgD~~~ 161 (176)
T PF13419_consen 140 RRALEKLGIPPEEILFVGDSPS 161 (176)
T ss_dssp HHHHHHHTSSGGGEEEEESSHH
T ss_pred HHHHHHcCCCcceEEEEeCCHH
Confidence 3444567899999999999993
No 243
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=47.31 E-value=21 Score=24.75 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=28.6
Q ss_pred ccCChhHHHHHHHHHHHHHhhH-HhCCCCCcEEEEecC
Q psy4013 4 RVANYGLMDQIAALHWVQQNIA-LFGGDPGNVTMMGHG 40 (69)
Q Consensus 4 ~~~n~~~~D~~~al~wi~~~~~-~~~~d~~~i~l~G~S 40 (69)
.+.+...+.+..+++.+.+... .||....||.|.|-.
T Consensus 170 V~~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLN 207 (329)
T PRK01909 170 VSAALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLN 207 (329)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeC
Confidence 3445556677788888887777 699998899999965
No 244
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=47.17 E-value=29 Score=23.42 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=17.8
Q ss_pred HHhC--CCCCcEEEEecChHHHHHH
Q psy4013 25 ALFG--GDPGNVTMMGHGTGAACIN 47 (69)
Q Consensus 25 ~~~~--~d~~~i~l~G~SaGa~l~~ 47 (69)
+.++ .+++++.++|+|++..-++
T Consensus 203 ~~~~~~~~~~~vI~vGDs~~Dl~ma 227 (277)
T TIGR01544 203 EYFNQLKDRSNIILLGDSQGDLRMA 227 (277)
T ss_pred HHhCccCCcceEEEECcChhhhhHh
Confidence 3455 6899999999999976553
No 245
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=46.20 E-value=28 Score=18.22 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhHHhCCCCC
Q psy4013 11 MDQIAALHWVQQNIALFGGDPG 32 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~ 32 (69)
.-+...+.||.+++.+.|..|+
T Consensus 6 ~rQ~~vL~~I~~~~~~~G~~Pt 27 (65)
T PF01726_consen 6 ERQKEVLEFIREYIEENGYPPT 27 (65)
T ss_dssp HHHHHHHHHHHHHHHHHSS---
T ss_pred HHHHHHHHHHHHHHHHcCCCCC
Confidence 4467899999999999998874
No 246
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=45.78 E-value=36 Score=24.20 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=16.1
Q ss_pred CCcEEEEecChHHHHHHHHHh
Q psy4013 31 PGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~ 51 (69)
..+++++|+|-||+-+-.++.
T Consensus 164 ~~~~yi~GESYaG~yvP~la~ 184 (433)
T PLN03016 164 SNPLYVVGDSYSGMIVPALVQ 184 (433)
T ss_pred CCCEEEEccCccceehHHHHH
Confidence 445999999999986665544
No 247
>PF00237 Ribosomal_L22: Ribosomal protein L22p/L17e; InterPro: IPR001063 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L22 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L22 is known to bind 23S rRNA. It belongs to a family of ribosomal proteins which includes: bacterial L22; algal and plant chloroplast L22 (in legumes L22 is encoded in the nucleus instead of the chloroplast); cyanelle L22; archaebacterial L22; mammalian L17; plant L17 and yeast YL17.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3CD6_R 1Q7Y_S 1VQ6_R 1YI2_R 1QVF_Q 3CCR_R 3CCU_R 3CCL_R 1YJ9_R 3CCQ_R ....
Probab=45.74 E-value=55 Score=18.44 Aligned_cols=32 Identities=19% Similarity=0.065 Sum_probs=24.5
Q ss_pred ChhHHHHHHHHHHHHHhhH-HhCCCCCcEEEEe
Q psy4013 7 NYGLMDQIAALHWVQQNIA-LFGGDPGNVTMMG 38 (69)
Q Consensus 7 n~~~~D~~~al~wi~~~~~-~~~~d~~~i~l~G 38 (69)
+.+-..+...+.-...|+. ..|.|++++++.-
T Consensus 37 ~k~a~~i~k~L~~a~~nA~~~~g~d~~~L~I~~ 69 (105)
T PF00237_consen 37 KKAAKFILKLLKSAIANAENNKGLDPDNLYISE 69 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTSTCGGEEEEE
T ss_pred HHHHHHHHhhHHHHHhhcccccccccCceEEEE
Confidence 3455666777787888888 8899999998854
No 248
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=44.65 E-value=31 Score=19.93 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=15.8
Q ss_pred cEEEEecChHHHHHHHHHhC
Q psy4013 33 NVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 33 ~i~l~G~SaGa~l~~~~~~~ 52 (69)
--.+.|-|+||..++++...
T Consensus 28 ~d~i~GtS~Gal~a~~~~~~ 47 (204)
T PF01734_consen 28 FDVISGTSAGALNAALLALG 47 (204)
T ss_dssp -SEEEEECCHHHHHHHHHTC
T ss_pred ccEEEEcChhhhhHHHHHhC
Confidence 35688999999988777775
No 249
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=44.48 E-value=34 Score=21.80 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=19.0
Q ss_pred HHHHHHHHhhHHhCCCCCcEEEEecChH
Q psy4013 15 AALHWVQQNIALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l~G~SaG 42 (69)
.+++|+.+ .++.+++++..+|+|.=
T Consensus 170 ~al~~l~~---~~~i~~~~~i~~GD~~N 194 (249)
T TIGR01485 170 QALQYLLQ---KLAMEPSQTLVCGDSGN 194 (249)
T ss_pred HHHHHHHH---HcCCCccCEEEEECChh
Confidence 35666654 47889999999999954
No 250
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=43.93 E-value=29 Score=22.45 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=26.2
Q ss_pred cCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCC
Q psy4013 5 VANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 5 ~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~ 53 (69)
.|..|+.. .-+++.+.++ +.. +-=.+.|-|+||..++.+....
T Consensus 6 GG~rG~~~-~Gvl~al~e~----~~~-~fd~i~GtSaGAi~a~~~~~g~ 48 (266)
T cd07208 6 GGMRGAYT-AGVLDAFLEA----GIR-PFDLVIGVSAGALNAASYLSGQ 48 (266)
T ss_pred chhhHHHH-HHHHHHHHHc----CCC-CCCEEEEECHHHHhHHHHHhCC
Confidence 34444433 3455555543 232 1237889999999999887754
No 251
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=43.90 E-value=31 Score=20.83 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCC
Q psy4013 14 IAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 14 ~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~ 53 (69)
.-+++++.++ +.. --.+.|-|+||..++.+....
T Consensus 14 ~Gvl~aL~e~----gi~--~d~v~GtSaGAi~aa~~a~g~ 47 (172)
T cd07198 14 VGVAKALRER----GPL--IDIIAGTSAGAIVAALLASGR 47 (172)
T ss_pred HHHHHHHHHc----CCC--CCEEEEECHHHHHHHHHHcCC
Confidence 3456666654 333 467889999999999888754
No 252
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=43.86 E-value=68 Score=24.73 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhHHhCCCCC-----cEEE---------EecChHHHHHHHHHh
Q psy4013 11 MDQIAALHWVQQNIALFGGDPG-----NVTM---------MGHGTGAACINFLMI 51 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~-----~i~l---------~G~SaGa~l~~~~~~ 51 (69)
+-+..|+.|++.+..+++.+++ .|++ -|.|||-.++..+..
T Consensus 636 es~~~A~~~~~~~~~~~~~~~~~~~~~Di~i~v~~g~~~~dgpsagla~~~Al~S 690 (784)
T PRK10787 636 ESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVS 690 (784)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccCceEEEEecCCCCCCCCCchHHHHHHHHHH
Confidence 5566899999999999988754 2433 367888655544443
No 253
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=43.48 E-value=26 Score=24.20 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=29.3
Q ss_pred ccCChhHHHHHHHHHHHHHhhH-HhCCCCCcEEEEecC
Q psy4013 4 RVANYGLMDQIAALHWVQQNIA-LFGGDPGNVTMMGHG 40 (69)
Q Consensus 4 ~~~n~~~~D~~~al~wi~~~~~-~~~~d~~~i~l~G~S 40 (69)
.+.+...+.+..+++.+.+... .||....||.|.|-.
T Consensus 167 v~~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLN 204 (320)
T TIGR00557 167 VPAALTPELLVEKLRILHADLRRDFGIARPRIAVAGLN 204 (320)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecC
Confidence 3445566777888888888877 689999999999966
No 254
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=43.41 E-value=24 Score=24.08 Aligned_cols=38 Identities=8% Similarity=0.128 Sum_probs=25.5
Q ss_pred cccCChhHHHHHHHHHHHHHhhHH-hCCCCCcEEEEecC
Q psy4013 3 ARVANYGLMDQIAALHWVQQNIAL-FGGDPGNVTMMGHG 40 (69)
Q Consensus 3 ~~~~n~~~~D~~~al~wi~~~~~~-~~~d~~~i~l~G~S 40 (69)
..+.....+.+...++-+.+...+ ||....||.|.|-.
T Consensus 147 ~V~~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLN 185 (298)
T PF04166_consen 147 DVPKLITKERILEKIRLLHKSLKRDFGIENPRIAVAGLN 185 (298)
T ss_dssp GHHHH--HHHHHHHHHHHHHHHHHTTT-SS-EEEEE-SS
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Confidence 344455566777888888887777 99999999999965
No 255
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=43.26 E-value=46 Score=22.10 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=24.9
Q ss_pred CChhHHHH--HHHHHHHHHhhH-HhCCCCCcEEEEec
Q psy4013 6 ANYGLMDQ--IAALHWVQQNIA-LFGGDPGNVTMMGH 39 (69)
Q Consensus 6 ~n~~~~D~--~~al~wi~~~~~-~~~~d~~~i~l~G~ 39 (69)
||+.+.|= ..|+.|..+-.- .++.+++|+++.=+
T Consensus 87 GNfSFgdYFK~eaI~~awe~LT~~l~l~~~rl~vTv~ 123 (232)
T cd00673 87 GNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVF 123 (232)
T ss_pred cccchhhhhHHHHHHHHHHHHHhhcCCCccceEEEEe
Confidence 67777774 367888777764 48999999877754
No 256
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=42.94 E-value=58 Score=21.14 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=17.3
Q ss_pred EEEEecChHHHHHHHHHhCCC
Q psy4013 34 VTMMGHGTGAACINFLMISPT 54 (69)
Q Consensus 34 i~l~G~SaGa~l~~~~~~~~~ 54 (69)
-.+.|-||||..++.+.....
T Consensus 33 ~~i~GtSAGAl~aa~~a~g~~ 53 (243)
T cd07204 33 RRIAGASAGAIVAAVVLCGVS 53 (243)
T ss_pred CEEEEEcHHHHHHHHHHhCCC
Confidence 389999999999988887543
No 257
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=42.92 E-value=24 Score=21.31 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=17.2
Q ss_pred HHHHHhhHHhCCCCCcEEEEe
Q psy4013 18 HWVQQNIALFGGDPGNVTMMG 38 (69)
Q Consensus 18 ~wi~~~~~~~~~d~~~i~l~G 38 (69)
+.+++..-+.|.+++||.+.|
T Consensus 146 e~~~~~l~~~Gi~~~~I~vtG 166 (169)
T PF06925_consen 146 EEVKEELIERGIPPERIHVTG 166 (169)
T ss_pred HHHHHHHHHcCCChhHEEEeC
Confidence 456667777899999999998
No 258
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=42.83 E-value=40 Score=21.90 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=22.5
Q ss_pred CCcEEEEecChHHHHHHHHHhCCCccccceeecccc
Q psy4013 31 PGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSW 66 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~ 66 (69)
.++|.|+++|.|--.+..++.. ..+.+.|.+.|-
T Consensus 56 y~~i~lvAWSmGVw~A~~~l~~--~~~~~aiAINGT 89 (213)
T PF04301_consen 56 YREIYLVAWSMGVWAANRVLQG--IPFKRAIAINGT 89 (213)
T ss_pred CceEEEEEEeHHHHHHHHHhcc--CCcceeEEEECC
Confidence 5689999999997665554332 245566666653
No 259
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=42.80 E-value=63 Score=22.00 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=28.6
Q ss_pred hHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeeccc
Q psy4013 24 IALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSS 65 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg 65 (69)
.+.|+.. .++-+|-.|||+.-+-+++..+.+..+.|.++.
T Consensus 93 l~~f~lk--~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~ 132 (283)
T PF03096_consen 93 LDHFGLK--SVIGFGVGAGANILARFALKHPERVLGLILVNP 132 (283)
T ss_dssp HHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES-
T ss_pred HHhCCcc--EEEEEeeccchhhhhhccccCccceeEEEEEec
Confidence 3446664 599999999999999888887777766666553
No 260
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=42.40 E-value=61 Score=21.62 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=14.5
Q ss_pred EEEecChHHHHHHHHHh
Q psy4013 35 TMMGHGTGAACINFLMI 51 (69)
Q Consensus 35 ~l~G~SaGa~l~~~~~~ 51 (69)
.++|-|+||.+++.+..
T Consensus 45 li~GTStGgiiA~~l~~ 61 (309)
T cd07216 45 LIGGTSTGGLIAIMLGR 61 (309)
T ss_pred eeeeccHHHHHHHHhcc
Confidence 78899999999988753
No 261
>PLN02209 serine carboxypeptidase
Probab=41.89 E-value=48 Score=23.66 Aligned_cols=38 Identities=8% Similarity=-0.003 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhHHhC-CCCCcEEEEecChHHHHHHHHHh
Q psy4013 14 IAALHWVQQNIALFG-GDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 14 ~~al~wi~~~~~~~~-~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
....+++++-..+|. ....+++++|+|-|||-+-.++.
T Consensus 148 ~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~ 186 (437)
T PLN02209 148 KKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVH 186 (437)
T ss_pred HHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHH
Confidence 334444444433332 23446999999999986555543
No 262
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=41.42 E-value=8.4 Score=21.56 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCC
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDP 31 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~ 31 (69)
+-+.|...++.-+.+|..+|+.++
T Consensus 53 ~~L~DL~~aV~ive~np~kF~l~~ 76 (97)
T PF09177_consen 53 WDLEDLEEAVRIVEKNPSKFNLSE 76 (97)
T ss_dssp HHHHHHHHHHHHHHCCHHHHT-HH
T ss_pred HHHHHHHHHHHHHHhCccccCCCH
Confidence 567889999999999999998764
No 263
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=41.33 E-value=43 Score=22.05 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=16.1
Q ss_pred EEEEecChHHHHHHHHHhCC
Q psy4013 34 VTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 34 i~l~G~SaGa~l~~~~~~~~ 53 (69)
-.+.|-|||+..++.++...
T Consensus 38 ~~i~G~SAGAl~aa~~a~g~ 57 (249)
T cd07220 38 RKIYGASAGALTATALVTGV 57 (249)
T ss_pred CeEEEEcHHHHHHHHHHcCC
Confidence 45789999999988877644
No 264
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=40.88 E-value=1.1e+02 Score=23.42 Aligned_cols=25 Identities=8% Similarity=0.101 Sum_probs=19.9
Q ss_pred CChhHHHHHHHHHHHHHhhHHhCCC
Q psy4013 6 ANYGLMDQIAALHWVQQNIALFGGD 30 (69)
Q Consensus 6 ~n~~~~D~~~al~wi~~~~~~~~~d 30 (69)
++..=+-+..|+.|++.++.+++++
T Consensus 533 g~vmKESa~~A~sy~ks~a~~l~~~ 557 (675)
T TIGR02653 533 NTTAKESIRVAFDYFKGNLVRISAS 557 (675)
T ss_pred hHHHHHHHHHHHHHHHHhHHhcCCC
Confidence 3444466778999999999999876
No 265
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=39.68 E-value=31 Score=24.12 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=27.3
Q ss_pred cCChhHHHHHHHHHHHHHhhH-HhCCCCCcEEEEecC
Q psy4013 5 VANYGLMDQIAALHWVQQNIA-LFGGDPGNVTMMGHG 40 (69)
Q Consensus 5 ~~n~~~~D~~~al~wi~~~~~-~~~~d~~~i~l~G~S 40 (69)
+.+...+.+..+++.+.+... .||....||.|.|-.
T Consensus 178 ~~~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLN 214 (345)
T PRK02746 178 PKTLTPELITSKLDLLIDFLQRDFGIEKPRIAIAGLN 214 (345)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHcCCCCCcEEEEeeC
Confidence 444555666777787877777 699998899999965
No 266
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=39.53 E-value=59 Score=20.93 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=16.0
Q ss_pred HHhC-CCCCcEEEEecChHHHHHHHHH
Q psy4013 25 ALFG-GDPGNVTMMGHGTGAACINFLM 50 (69)
Q Consensus 25 ~~~~-~d~~~i~l~G~SaGa~l~~~~~ 50 (69)
.++| ..| -.++|||.|-..++...
T Consensus 77 ~~~g~i~p--~~v~GhS~GE~aAa~~a 101 (290)
T TIGR00128 77 KEQGGLKP--DFAAGHSLGEYSALVAA 101 (290)
T ss_pred HHcCCCCC--CEEeecCHHHHHHHHHh
Confidence 3455 555 58999999976555443
No 267
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=39.47 E-value=33 Score=20.96 Aligned_cols=25 Identities=16% Similarity=0.480 Sum_probs=19.0
Q ss_pred HHHHHHHHhhHHhCCCCCcEEEEecChH
Q psy4013 15 AALHWVQQNIALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l~G~SaG 42 (69)
.|++++. ..++.+++++..+|+|.=
T Consensus 189 ~ai~~l~---~~~~i~~~~~~~~GD~~N 213 (254)
T PF08282_consen 189 SAIKYLL---EYLGISPEDIIAFGDSEN 213 (254)
T ss_dssp HHHHHHH---HHHTTSGGGEEEEESSGG
T ss_pred HHHHHHh---hhcccccceeEEeecccc
Confidence 3555555 457899999999999954
No 268
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
Probab=39.03 E-value=31 Score=22.91 Aligned_cols=35 Identities=23% Similarity=0.477 Sum_probs=28.6
Q ss_pred ccCChhHHHHHHHHHHHHHhhHHhCC--CCCcEEEEe
Q psy4013 4 RVANYGLMDQIAALHWVQQNIALFGG--DPGNVTMMG 38 (69)
Q Consensus 4 ~~~n~~~~D~~~al~wi~~~~~~~~~--d~~~i~l~G 38 (69)
+.+...+.|...++.|+.++..+.|. .+.+|++.|
T Consensus 202 g~~~~~lg~P~~al~wL~~~l~~~G~~L~aGdiV~TG 238 (267)
T TIGR02312 202 GLAAGVLNHPANGVAWLANKLAPWGETLEAGQVVLAG 238 (267)
T ss_pred echhhhcCCHHHHHHHHHHHHHHcCCCCCCCCEEECC
Confidence 34556678899999999999988865 577899999
No 269
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=38.58 E-value=48 Score=23.01 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=39.4
Q ss_pred ccCChhHHHHHHHHHHHH---------HhhHHhCCCCCcEEEEecChHHHHHHHHHhCC
Q psy4013 4 RVANYGLMDQIAALHWVQ---------QNIALFGGDPGNVTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 4 ~~~n~~~~D~~~al~wi~---------~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~ 53 (69)
..++++..|++.++.|+. +...+|+.+++.-.|.||+-|-++...++...
T Consensus 53 ~~~~~~~GD~rn~l~al~~~~e~~~~~e~L~qyrf~~~~g~L~gh~lgnl~l~a~~~~~ 111 (323)
T COG0391 53 DTGLYPPGDLRNCLAALGIDEETFRTHERLFQYRFGEGNGELGGHDLGNLMLAALSLIS 111 (323)
T ss_pred ecCCCCChhHHHHHHHhccCCcchhHHHHHHhcccCCCCCcccCccchhHHHHHHHhhc
Confidence 456788889999888876 34556678888888999999998888777644
No 270
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=38.52 E-value=74 Score=22.38 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=25.3
Q ss_pred HHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh
Q psy4013 16 ALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 16 al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
|=+|+-+++++...+ .+|.++++|-||..++....
T Consensus 31 ade~ll~~~~~~~~~-~~~~i~nd~fGal~~~l~~~ 65 (378)
T PRK15001 31 ADEYLLQQLDDTEIR-GPVLILNDAFGALSCALAEH 65 (378)
T ss_pred HHHHHHHHHhhcccC-CCEEEEcCchhHHHHHHHhC
Confidence 446677777665433 28999999999988877643
No 271
>KOG3253|consensus
Probab=38.34 E-value=33 Score=26.30 Aligned_cols=58 Identities=10% Similarity=0.089 Sum_probs=31.9
Q ss_pred CChhHHHHHHHHHHHHH-hhHHhCC--CCCcEEEEecChHHHHHHHHHhCCCc-cccceeec
Q psy4013 6 ANYGLMDQIAALHWVQQ-NIALFGG--DPGNVTMMGHGTGAACINFLMISPTV-MPDRIIDQ 63 (69)
Q Consensus 6 ~n~~~~D~~~al~wi~~-~~~~~~~--d~~~i~l~G~SaGa~l~~~~~~~~~~-~~~~~i~~ 63 (69)
+|..+..+...+.-+.+ ...+..+ --..|+|+|+|+|+.++..+...... ..+..|.+
T Consensus 221 gG~nI~h~ae~~vSf~r~kvlei~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCi 282 (784)
T KOG3253|consen 221 GGANIKHAAEYSVSFDRYKVLEITGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCI 282 (784)
T ss_pred CCcchHHHHHHHHHHhhhhhhhhhccCCCCceEEEecccCceeeEEeccccCCceEEEEEEe
Confidence 44555555444322222 2233333 23459999999998877777665553 23444444
No 272
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=38.01 E-value=76 Score=21.71 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=18.3
Q ss_pred CCCCCcEEEEecChHHHHHHHHHhCC
Q psy4013 28 GGDPGNVTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 28 ~~d~~~i~l~G~SaGa~l~~~~~~~~ 53 (69)
+..|+ .+.|-|||+..++.++...
T Consensus 95 ~l~~~--~i~GtSaGAi~aa~~~~~~ 118 (298)
T cd07206 95 DLLPR--VISGSSAGAIVAALLGTHT 118 (298)
T ss_pred CCCCC--EEEEEcHHHHHHHHHHcCC
Confidence 44553 4999999999998887643
No 273
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=37.91 E-value=20 Score=21.41 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=11.0
Q ss_pred EEEEecChHHHHH
Q psy4013 34 VTMMGHGTGAACI 46 (69)
Q Consensus 34 i~l~G~SaGa~l~ 46 (69)
..++|.||||.+.
T Consensus 70 ~vi~G~SAGA~i~ 82 (154)
T PF03575_consen 70 GVIIGTSAGAMIL 82 (154)
T ss_dssp SEEEEETHHHHCT
T ss_pred CEEEEEChHHhhc
Confidence 7889999999764
No 274
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.53 E-value=80 Score=21.68 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=23.3
Q ss_pred HHHHHHHhhHHh-CCCCCcEEEEecChHHHHHHHHH
Q psy4013 16 ALHWVQQNIALF-GGDPGNVTMMGHGTGAACINFLM 50 (69)
Q Consensus 16 al~wi~~~~~~~-~~d~~~i~l~G~SaGa~l~~~~~ 50 (69)
-++-+.++..+. ..+..|++|.|.|-|+.-.....
T Consensus 92 L~~aV~~~~~~lP~~~RPkL~l~GeSLGa~g~~~af 127 (289)
T PF10081_consen 92 LFEAVYARWSTLPEDRRPKLYLYGESLGAYGGEAAF 127 (289)
T ss_pred HHHHHHHHHHhCCcccCCeEEEeccCccccchhhhh
Confidence 334444555444 34678899999999987665544
No 275
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=37.31 E-value=54 Score=19.27 Aligned_cols=27 Identities=4% Similarity=0.004 Sum_probs=19.2
Q ss_pred HHHhhHHhCCCCCcEEEEecChHHHHH
Q psy4013 20 VQQNIALFGGDPGNVTMMGHGTGAACI 46 (69)
Q Consensus 20 i~~~~~~~~~d~~~i~l~G~SaGa~l~ 46 (69)
+++...+.+.++++++..|+|..-.-+
T Consensus 147 l~~~~~~~~~~~~~~~~iGDs~~D~~~ 173 (177)
T TIGR01488 147 LKELLEESKITLKKIIAVGDSVNDLPM 173 (177)
T ss_pred HHHHHHHhCCCHHHEEEEeCCHHHHHH
Confidence 334444567788999999999876544
No 276
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=37.23 E-value=29 Score=21.54 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=19.7
Q ss_pred HHHHHHHHhhHHhCCCCCcEEEEecChHH
Q psy4013 15 AALHWVQQNIALFGGDPGNVTMMGHGTGA 43 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l~G~SaGa 43 (69)
.+++|+.+ .++.+++++..+|+|---
T Consensus 160 ~al~~l~~---~~~i~~~~~i~~GD~~ND 185 (230)
T PRK01158 160 TGLKKLAE---LMGIDPEEVAAIGDSEND 185 (230)
T ss_pred HHHHHHHH---HhCCCHHHEEEECCchhh
Confidence 45666655 478899999999999653
No 277
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=37.11 E-value=22 Score=22.83 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=13.2
Q ss_pred CCCCcEEEEecChHHH
Q psy4013 29 GDPGNVTMMGHGTGAA 44 (69)
Q Consensus 29 ~d~~~i~l~G~SaGa~ 44 (69)
-+.+.|++.|||-|-.
T Consensus 232 ~~i~~I~i~GhSl~~~ 247 (270)
T PF14253_consen 232 SDIDEIIIYGHSLGEV 247 (270)
T ss_pred cCCCEEEEEeCCCchh
Confidence 3678999999999853
No 278
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=36.94 E-value=63 Score=19.72 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=19.1
Q ss_pred HHhhHHhCCCCCcEEEEecChHHHHH
Q psy4013 21 QQNIALFGGDPGNVTMMGHGTGAACI 46 (69)
Q Consensus 21 ~~~~~~~~~d~~~i~l~G~SaGa~l~ 46 (69)
.+-..+++.+|+++.++|+|.....+
T Consensus 138 ~~~~~~~~~~~~~~l~igD~~~Di~a 163 (205)
T TIGR01454 138 REALRLLDVPPEDAVMVGDAVTDLAS 163 (205)
T ss_pred HHHHHHcCCChhheEEEcCCHHHHHH
Confidence 34445678899999999999754433
No 279
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=36.93 E-value=73 Score=21.88 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc
Q psy4013 14 IAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV 55 (69)
Q Consensus 14 ~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~ 55 (69)
..|+..+++.+.+.| .++|-|+|+.+.+..-+..+.
T Consensus 245 ~~A~~~~r~La~~eG------ilvG~SsGA~~~aa~~~a~~~ 280 (300)
T COG0031 245 EEAIATARRLAREEG------LLVGISSGAALAAALKLAKEL 280 (300)
T ss_pred HHHHHHHHHHHHHhC------eeecccHHHHHHHHHHHHHhc
Confidence 356666666655544 478999999999988775544
No 280
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=36.31 E-value=41 Score=22.00 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhHHhCCCCCcEEEEec
Q psy4013 12 DQIAALHWVQQNIALFGGDPGNVTMMGH 39 (69)
Q Consensus 12 D~~~al~wi~~~~~~~~~d~~~i~l~G~ 39 (69)
|...-++|+++.+.+..-..++|+|++|
T Consensus 194 ~~~~Ql~WL~~~L~~a~~~~~~v~I~~H 221 (296)
T cd00842 194 DPAGQLQWLEDELQEAEQAGEKVWIIGH 221 (296)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4567789999988887666678999987
No 281
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=36.30 E-value=84 Score=21.86 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=18.3
Q ss_pred CCCCCcEEEEecChHHHHHHHHHhCC
Q psy4013 28 GGDPGNVTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 28 ~~d~~~i~l~G~SaGa~l~~~~~~~~ 53 (69)
+.-|+ .+.|-|+|+..++.++...
T Consensus 94 gl~p~--~i~GsSaGAivaa~~~~~t 117 (323)
T cd07231 94 QLLPR--VIAGSSVGSIVCAIIATRT 117 (323)
T ss_pred CCCCC--EEEEECHHHHHHHHHHcCC
Confidence 45553 4899999999998887743
No 282
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=36.05 E-value=59 Score=19.75 Aligned_cols=29 Identities=10% Similarity=0.045 Sum_probs=21.2
Q ss_pred HHhhHHhCCCCCcEEEEecChHHHHHHHH
Q psy4013 21 QQNIALFGGDPGNVTMMGHGTGAACINFL 49 (69)
Q Consensus 21 ~~~~~~~~~d~~~i~l~G~SaGa~l~~~~ 49 (69)
..-..+++.+|+++.++|+|.....++..
T Consensus 148 ~~~~~~~~~~~~~~~~igDs~~d~~aa~~ 176 (213)
T TIGR01449 148 LLAAERLGVAPQQMVYVGDSRVDIQAARA 176 (213)
T ss_pred HHHHHHcCCChhHeEEeCCCHHHHHHHHH
Confidence 34455678899999999999876555543
No 283
>PF09722 DUF2384: Protein of unknown function (DUF2384); InterPro: IPR024467 This domain is found predominantly in proteobacterial proteins. Its function in unknown.
Probab=35.98 E-value=29 Score=17.09 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHH
Q psy4013 11 MDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLM 50 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~ 50 (69)
.|...|.+|+.+....|++.. .+-++-...|...+.-++
T Consensus 9 gd~~~a~~Wl~~p~~~l~g~~-Plel~~t~~G~~~V~~~L 47 (54)
T PF09722_consen 9 GDEDKARRWLRTPNPALGGRT-PLELLRTEAGAERVLDYL 47 (54)
T ss_pred CCHHHHHHHHHChHHHhCCCC-HHHHHcChHHHHHHHHHH
Confidence 467889999999999998842 244444456665555443
No 284
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=35.89 E-value=41 Score=23.81 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=16.0
Q ss_pred EEEecChHHHHHHHHHhCC
Q psy4013 35 TMMGHGTGAACINFLMISP 53 (69)
Q Consensus 35 ~l~G~SaGa~l~~~~~~~~ 53 (69)
.+.|-||||..++.++...
T Consensus 98 iI~GtSAGAivaalla~~t 116 (407)
T cd07232 98 VISGTSGGSLVAALLCTRT 116 (407)
T ss_pred EEEEECHHHHHHHHHHcCC
Confidence 4899999999998888744
No 285
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=35.88 E-value=45 Score=21.06 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCC
Q psy4013 14 IAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPT 54 (69)
Q Consensus 14 ~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~ 54 (69)
.-+++.+.+. +..+ =.+.|-|+||.+++.+.....
T Consensus 14 ~Gvl~aL~e~----g~~~--d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 14 AGVLKALAEA----GIEP--DIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHHHHHc----CCCC--CEEEEECHHHHHHHHHHcCCc
Confidence 3455656553 3333 378999999999999887654
No 286
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase. Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.
Probab=35.77 E-value=35 Score=22.59 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=27.6
Q ss_pred cCChhHHHHHHHHHHHHHhhHHhCC--CCCcEEEEe
Q psy4013 5 VANYGLMDQIAALHWVQQNIALFGG--DPGNVTMMG 38 (69)
Q Consensus 5 ~~n~~~~D~~~al~wi~~~~~~~~~--d~~~i~l~G 38 (69)
.+...+.|...++.|+.+++.++|. .+.+|++.|
T Consensus 200 ~g~~~lG~P~~al~wL~~~l~~~G~~L~aG~iV~tG 235 (263)
T TIGR03218 200 AGAAVLGHPAAAVAMLANHLAERGEEIPAGSFIMSG 235 (263)
T ss_pred cccccCCCHHHHHHHHHHHHHHcCCCCCCCCEEECC
Confidence 4455567889999999999999865 577899888
No 287
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=35.48 E-value=42 Score=22.88 Aligned_cols=28 Identities=7% Similarity=0.041 Sum_probs=21.8
Q ss_pred HHHHHhhHHhCCCCCcEEEEecChHHHH
Q psy4013 18 HWVQQNIALFGGDPGNVTMMGHGTGAAC 45 (69)
Q Consensus 18 ~wi~~~~~~~~~d~~~i~l~G~SaGa~l 45 (69)
+.+++..+++|.++++++.+|+|+-..-
T Consensus 251 ~~L~~la~~lgi~~~qtIaVGDg~NDl~ 278 (322)
T PRK11133 251 DTLTRLAQEYEIPLAQTVAIGDGANDLP 278 (322)
T ss_pred HHHHHHHHHcCCChhhEEEEECCHHHHH
Confidence 4456666778999999999999985433
No 288
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=35.46 E-value=73 Score=19.96 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHH
Q psy4013 11 MDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLM 50 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~ 50 (69)
.|...+++.++ ..+|+++|||-.-.+-..+.
T Consensus 4 ~d~~~cL~~lr---------~k~i~fiGDS~~Rq~~~~l~ 34 (263)
T PF13839_consen 4 FDARECLQRLR---------NKRIVFIGDSTTRQQYESLV 34 (263)
T ss_pred hhHHHHHHHcc---------CCEEEEEechhhHHHHHHHH
Confidence 45566666555 67899999998865544443
No 289
>KOG2029|consensus
Probab=34.97 E-value=1.2e+02 Score=23.33 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=19.7
Q ss_pred CCCCcEEEEecChHHHHHHHHHhC
Q psy4013 29 GDPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 29 ~d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
||-..|.-.|||+||.++=.+++.
T Consensus 523 G~~RPivwI~HSmGGLl~K~lLld 546 (697)
T KOG2029|consen 523 GDDRPIVWIGHSMGGLLAKKLLLD 546 (697)
T ss_pred CCCCceEEEecccchHHHHHHHHH
Confidence 567779999999999888777763
No 290
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=34.62 E-value=78 Score=22.34 Aligned_cols=39 Identities=15% Similarity=0.326 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHh
Q psy4013 12 DQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 12 D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~ 51 (69)
.+..-+.|++....--+| |.||.+.|.|.|=.|++-.+.
T Consensus 23 nV~~QI~y~k~~gp~~ng-PKkVLviGaSsGyGLa~RIsa 61 (398)
T COG3007 23 NVLQQIDYVKAAGPIKNG-PKKVLVIGASSGYGLAARISA 61 (398)
T ss_pred HHHHHHHHHHhcCCccCC-CceEEEEecCCcccHHHHHHH
Confidence 445566777765543333 899999999999666665544
No 291
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=34.57 E-value=53 Score=22.96 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=28.1
Q ss_pred cccCChhHHHHHHHHHHHHHhh-HHhCCCCCcEEEEecC
Q psy4013 3 ARVANYGLMDQIAALHWVQQNI-ALFGGDPGNVTMMGHG 40 (69)
Q Consensus 3 ~~~~n~~~~D~~~al~wi~~~~-~~~~~d~~~i~l~G~S 40 (69)
+.+.....+-+...++-+.+.. .+||....||.|.|-+
T Consensus 172 ~V~~~iT~e~l~~~~~i~~~~L~~~fGi~~PriaVaGLN 210 (332)
T COG1995 172 DVPDAITPELLLEVLRILDKDLRKKFGIAEPRIAVAGLN 210 (332)
T ss_pred HHHhhhCHHHHHHHHHHHHHHHHHhhCCCCcceEEeccC
Confidence 3344455555666677777777 8899999999999966
No 292
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=34.48 E-value=50 Score=20.45 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=18.6
Q ss_pred HHHHHHHhhHHhCCCCCcEEEEecChHH
Q psy4013 16 ALHWVQQNIALFGGDPGNVTMMGHGTGA 43 (69)
Q Consensus 16 al~wi~~~~~~~~~d~~~i~l~G~SaGa 43 (69)
+++++. +.++.+++++..+|+|.--
T Consensus 183 al~~l~---~~lgi~~~~vi~~GD~~ND 207 (221)
T TIGR02463 183 AANWLK---ATYNQPDVKTLGLGDGPND 207 (221)
T ss_pred HHHHHH---HHhCCCCCcEEEECCCHHH
Confidence 445544 4578999999999999653
No 293
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=34.21 E-value=76 Score=22.55 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=20.0
Q ss_pred HhCCCCCcEEEEecChHHHHHHHHHhCC
Q psy4013 26 LFGGDPGNVTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 26 ~~~~d~~~i~l~G~SaGa~l~~~~~~~~ 53 (69)
+.|.-|+ .+.|-|+||..++.++..+
T Consensus 107 e~gl~p~--~i~GtS~Gaivaa~~a~~~ 132 (391)
T cd07229 107 LRGLLPR--IITGTATGALIAALVGVHT 132 (391)
T ss_pred HcCCCCc--eEEEecHHHHHHHHHHcCC
Confidence 3455564 4899999999999988854
No 294
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=34.12 E-value=35 Score=22.39 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=30.4
Q ss_pred ccCChhHHHHHHHHHHHHHhhHHhC--CCCCcEEEEecChH
Q psy4013 4 RVANYGLMDQIAALHWVQQNIALFG--GDPGNVTMMGHGTG 42 (69)
Q Consensus 4 ~~~n~~~~D~~~al~wi~~~~~~~~--~d~~~i~l~G~SaG 42 (69)
+.+...+.|...++.|+.++..+.+ ..+.+|+++|-=.|
T Consensus 191 g~~~~~lg~p~~~l~~L~~~l~~~g~~L~aGdiV~TGt~~g 231 (255)
T TIGR03220 191 GAGAAALGSPVNAVAWLANTLGRLGIPLKAGEVILSGSLAA 231 (255)
T ss_pred cchhhccCCHHHHHHHHHHHHHHcCCCCCCCCEEECCCCCC
Confidence 3455567889999999999998875 46888999995444
No 295
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=33.98 E-value=59 Score=19.47 Aligned_cols=26 Identities=4% Similarity=-0.064 Sum_probs=19.4
Q ss_pred hHHhCCCCCcEEEEecChHHHHHHHH
Q psy4013 24 IALFGGDPGNVTMMGHGTGAACINFL 49 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaGa~l~~~~ 49 (69)
..+++.++++++..|+|....-++..
T Consensus 156 ~~~~~~~~~~~i~iGDs~~D~~~a~~ 181 (201)
T TIGR01491 156 KRELNPSLTETVAVGDSKNDLPMFEV 181 (201)
T ss_pred HHHhCCCHHHEEEEcCCHhHHHHHHh
Confidence 34678899999999999875554443
No 296
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=33.94 E-value=1.7e+02 Score=22.46 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCC-----CcEEE---------EecChHHHHHHHHHh
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDP-----GNVTM---------MGHGTGAACINFLMI 51 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~-----~~i~l---------~G~SaGa~l~~~~~~ 51 (69)
..-+-...|+.|++.++..++.+. .+|++ -|-|+|-.++..++.
T Consensus 637 ~~kES~~~a~~~v~~~~~~~~~~~~~~~~~di~v~~~~g~~~k~Gpsa~laia~al~s 694 (775)
T TIGR00763 637 VMKESAQIALTYVRSIAADLGISPNFFEKADIHLHVPEGATPKDGPSAGITMATALLS 694 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccccCCeEEEEEcCCcccCCCCCcchHHHHHHHHH
Confidence 333556678999999999988764 34544 477888555444443
No 297
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=33.79 E-value=99 Score=18.06 Aligned_cols=23 Identities=9% Similarity=0.176 Sum_probs=17.6
Q ss_pred hHHhCCCCCcEEEEecChHHHHH
Q psy4013 24 IALFGGDPGNVTMMGHGTGAACI 46 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaGa~l~ 46 (69)
..+++.+|+++.++|+|.....+
T Consensus 150 ~~~~~~~~~~~~~vgD~~~di~a 172 (183)
T TIGR01509 150 LKKLGLKPEECLFVDDSPAGIEA 172 (183)
T ss_pred HHHcCCCcceEEEEcCCHHHHHH
Confidence 45578899999999999864433
No 298
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=33.78 E-value=53 Score=23.71 Aligned_cols=31 Identities=13% Similarity=0.122 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhHHhCCCCCcEEEEecChH
Q psy4013 12 DQIAALHWVQQNIALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 12 D~~~al~wi~~~~~~~~~d~~~i~l~G~SaG 42 (69)
+..+-.+++.+-+++.|.+.++|+|.|+=-|
T Consensus 63 tP~dF~~~V~~iA~~~g~~~~~iiLGGDHLG 93 (424)
T PF08013_consen 63 TPADFRDFVREIADEVGFPRDRIILGGDHLG 93 (424)
T ss_dssp -HHHHHHHHHHHHHHCT--GGGEEEEEEEES
T ss_pred CHHHHHHHHHHHHHHcCCchhhEEecCCCCC
Confidence 5666778899999999999999999998655
No 299
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Probab=33.60 E-value=32 Score=22.65 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=28.3
Q ss_pred ccCChhHHHHHHHHHHHHHhhHHhCC--CCCcEEEEec
Q psy4013 4 RVANYGLMDQIAALHWVQQNIALFGG--DPGNVTMMGH 39 (69)
Q Consensus 4 ~~~n~~~~D~~~al~wi~~~~~~~~~--d~~~i~l~G~ 39 (69)
+.++..+.|...++.|+.++..+.+. .+..|+++|-
T Consensus 195 g~~~~~lg~p~~~l~~L~~~l~~~g~~L~aGdvV~TGt 232 (262)
T PRK11342 195 GRGSECLGHPLNAAVWLARKMASLGEPLRAGDIILTGA 232 (262)
T ss_pred EcHHHhccCHHHHHHHHHHHHHHcCCCcCCCCEEEcCC
Confidence 44556778889999999998877654 6888999994
No 300
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=33.56 E-value=82 Score=20.57 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=17.0
Q ss_pred hHHhCCCCCcEEEEecChHHHHHHHHH
Q psy4013 24 IALFGGDPGNVTMMGHGTGAACINFLM 50 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaGa~l~~~~~ 50 (69)
..++|+.| -.++|||.|-..++.+.
T Consensus 70 l~~~g~~P--~~v~GhS~GE~aAa~~a 94 (295)
T TIGR03131 70 LLALLPRP--SAVAGYSVGEYAAAVVA 94 (295)
T ss_pred HHhcCCCC--cEEeecCHHHHHHHHHh
Confidence 34456755 68999999976555543
No 301
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=33.45 E-value=58 Score=24.09 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=18.0
Q ss_pred HHhCCCCCcEEEEecChHHHHHHHHH
Q psy4013 25 ALFGGDPGNVTMMGHGTGAACINFLM 50 (69)
Q Consensus 25 ~~~~~d~~~i~l~G~SaGa~l~~~~~ 50 (69)
.+||..|+ .++|||.|-..++..+
T Consensus 260 ~~~GI~Pd--av~GHSlGE~aAa~aA 283 (538)
T TIGR02816 260 DEFAIKPD--FALGYSKGEASMWASL 283 (538)
T ss_pred HhcCCCCC--EEeecCHHHHHHHHHh
Confidence 35788886 9999999966555544
No 302
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=33.44 E-value=75 Score=21.44 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=16.5
Q ss_pred hHHhCCCCCcE----EEEecChHHHHHHHHH
Q psy4013 24 IALFGGDPGNV----TMMGHGTGAACINFLM 50 (69)
Q Consensus 24 ~~~~~~d~~~i----~l~G~SaGa~l~~~~~ 50 (69)
..++|..|+.+ .+.|||.|-..++...
T Consensus 112 l~~~g~~~~~~~~~~~~~GHSlGE~aA~~~A 142 (343)
T PLN02752 112 LRARDGGQAVIDSVDVCAGLSLGEYTALVFA 142 (343)
T ss_pred HHhcCCCcccccCCCeeeeccHHHHHHHHHh
Confidence 34455445433 6899999975555443
No 303
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=33.38 E-value=37 Score=21.72 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=19.5
Q ss_pred HHHHHHHHhhHHhCCCCCcEEEEecChH
Q psy4013 15 AALHWVQQNIALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l~G~SaG 42 (69)
.|++++.+ .++.+++++..+|+|.-
T Consensus 192 ~al~~l~~---~lgi~~~~v~afGD~~N 216 (264)
T COG0561 192 YALQRLAK---LLGIKLEEVIAFGDSTN 216 (264)
T ss_pred HHHHHHHH---HhCCCHHHeEEeCCccc
Confidence 46666665 57888999999999954
No 304
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=33.33 E-value=1e+02 Score=18.43 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=15.4
Q ss_pred CcEEEEecChHHHHHHHHH
Q psy4013 32 GNVTMMGHGTGAACINFLM 50 (69)
Q Consensus 32 ~~i~l~G~SaGa~l~~~~~ 50 (69)
+--.+.|-|+|+..++.+.
T Consensus 28 ~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 28 CVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred CCCEEEEEcHHHHHHHHHh
Confidence 3467889999999888776
No 305
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=33.16 E-value=67 Score=16.92 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhHHhCCCCCcEEEEecChHHH
Q psy4013 13 QIAALHWVQQNIALFGGDPGNVTMMGHGTGAA 44 (69)
Q Consensus 13 ~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~ 44 (69)
...+..|+...+.+|+.++..|-+.-+..-|.
T Consensus 7 ~~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk 38 (68)
T cd08757 7 KNDVLEWLQFVAEQNKLDAECISFQKFNIDGQ 38 (68)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCccccCCCHH
Confidence 45677888888888888887666666664443
No 306
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=33.14 E-value=98 Score=23.73 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=28.3
Q ss_pred HHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc
Q psy4013 21 QQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV 55 (69)
Q Consensus 21 ~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~ 55 (69)
+.-+..++..+....+.|+.+||..++.+-..|..
T Consensus 313 RsIL~~~~i~~~d~l~~GDGSGGita~lLR~~p~s 347 (675)
T PF14314_consen 313 RSILKNLNIKYRDALCGGDGSGGITACLLRMNPTS 347 (675)
T ss_pred HHHHHhcCCCcceeEEEecCchHHHHHHHHhCccc
Confidence 34466678889889999999999999888887654
No 307
>KOG0256|consensus
Probab=32.88 E-value=61 Score=23.66 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=23.3
Q ss_pred CCCCCcEEEEecChHHHHHHHHHhCCC
Q psy4013 28 GGDPGNVTMMGHGTGAACINFLMISPT 54 (69)
Q Consensus 28 ~~d~~~i~l~G~SaGa~l~~~~~~~~~ 54 (69)
..||+|+.+.+...+++-+.+.++..+
T Consensus 143 ~fdP~~~Vv~~G~T~ane~l~fcLadp 169 (471)
T KOG0256|consen 143 KFDPERVVVTNGATSANETLMFCLADP 169 (471)
T ss_pred ccCccceEEecccchhhHHHHHHhcCC
Confidence 468999999999999999999888653
No 308
>PRK06835 DNA replication protein DnaC; Validated
Probab=32.51 E-value=1.4e+02 Score=20.50 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhHHhCCCCCcEEEEecChHH--HHHHHH
Q psy4013 11 MDQIAALHWVQQNIALFGGDPGNVTMMGHGTGA--ACINFL 49 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa--~l~~~~ 49 (69)
+.+..++.+.++.++.|.-....+++.|.+.-| |++..+
T Consensus 163 ~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aI 203 (329)
T PRK06835 163 KNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCI 203 (329)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHH
Confidence 445667777777888787667889999987655 444443
No 309
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=32.35 E-value=46 Score=22.00 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=15.5
Q ss_pred EEEecChHHHHHHHHHhC
Q psy4013 35 TMMGHGTGAACINFLMIS 52 (69)
Q Consensus 35 ~l~G~SaGa~l~~~~~~~ 52 (69)
.+.|-|+||.+++.+...
T Consensus 37 ~i~GTSaGaiia~~la~g 54 (288)
T cd07213 37 LFAGTSAGSLIALGLALG 54 (288)
T ss_pred EEEEeCHHHHHHHHHHcC
Confidence 688999999999988764
No 310
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=32.26 E-value=1.2e+02 Score=18.49 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=17.6
Q ss_pred hHHhCCCCCcEEEEecChHHHHH
Q psy4013 24 IALFGGDPGNVTMMGHGTGAACI 46 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaGa~l~ 46 (69)
+.+++.+|+++.++|+|.-...+
T Consensus 171 ~~~~~~~~~~~i~vGD~~~Di~a 193 (197)
T TIGR01548 171 AKALGVEACHAAMVGDTVDDIIT 193 (197)
T ss_pred HHHhCcCcccEEEEeCCHHHHHH
Confidence 34578899999999999755444
No 311
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=32.13 E-value=30 Score=23.05 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=10.5
Q ss_pred CCCcEEEEecChHH
Q psy4013 30 DPGNVTMMGHGTGA 43 (69)
Q Consensus 30 d~~~i~l~G~SaGa 43 (69)
.+++|.|+|+|.|-
T Consensus 178 ~R~NvlLlGDslgD 191 (246)
T PF05822_consen 178 KRTNVLLLGDSLGD 191 (246)
T ss_dssp T--EEEEEESSSGG
T ss_pred cCCcEEEecCccCC
Confidence 47789999999984
No 312
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=31.72 E-value=51 Score=25.68 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=25.2
Q ss_pred CChhHHHHH--HHHHHHHHhhHH-hCCCCCcEEEE
Q psy4013 6 ANYGLMDQI--AALHWVQQNIAL-FGGDPGNVTMM 37 (69)
Q Consensus 6 ~n~~~~D~~--~al~wi~~~~~~-~~~d~~~i~l~ 37 (69)
||+.+.|=. .|++|..+-.-+ |+.+|+|+++.
T Consensus 85 GnfSFgdYfK~eai~~awe~lT~~~~i~~~rl~vT 119 (851)
T TIGR00344 85 GNFSFGDYFKEEAIAFAWELLTSVLGLDKERLYVT 119 (851)
T ss_pred cccchhhhhHHHHHHHHHHHHhhhcCCChHHEEEE
Confidence 677777754 688888888755 99999999883
No 313
>PRK10976 putative hydrolase; Provisional
Probab=31.55 E-value=31 Score=22.04 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=18.4
Q ss_pred HHHHHHHHhhHHhCCCCCcEEEEecCh
Q psy4013 15 AALHWVQQNIALFGGDPGNVTMMGHGT 41 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l~G~Sa 41 (69)
.+++|+.+ .+|.+++++..+|+|-
T Consensus 193 ~al~~l~~---~lgi~~~~viafGD~~ 216 (266)
T PRK10976 193 HALEAVAK---KLGYSLKDCIAFGDGM 216 (266)
T ss_pred HHHHHHHH---HcCCCHHHeEEEcCCc
Confidence 45555554 5789999999999984
No 314
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=31.41 E-value=51 Score=19.33 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=17.1
Q ss_pred hHHhCCCCCcEEEEecChHHHHH
Q psy4013 24 IALFGGDPGNVTMMGHGTGAACI 46 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaGa~l~ 46 (69)
..+++.+|++++++|+|.-...+
T Consensus 111 ~~~~~~~~~e~i~IGDs~~Di~~ 133 (147)
T TIGR01656 111 LKRLGVDASRSLVVGDRLRDLQA 133 (147)
T ss_pred HHHcCCChHHEEEEcCCHHHHHH
Confidence 34567899999999999554333
No 315
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=30.75 E-value=38 Score=20.86 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=18.7
Q ss_pred HHHHHHHhhHHhCCCCCcEEEEecChHH
Q psy4013 16 ALHWVQQNIALFGGDPGNVTMMGHGTGA 43 (69)
Q Consensus 16 al~wi~~~~~~~~~d~~~i~l~G~SaGa 43 (69)
+++|+.+ .++.+++++..+|+|.--
T Consensus 153 ~i~~l~~---~~~i~~~~~i~~GD~~ND 177 (225)
T TIGR01482 153 AVKKLKE---KLGIKPGETLVCGDSEND 177 (225)
T ss_pred HHHHHHH---HhCCCHHHEEEECCCHhh
Confidence 5555554 578999999999998543
No 316
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=30.63 E-value=45 Score=25.00 Aligned_cols=34 Identities=6% Similarity=0.047 Sum_probs=26.7
Q ss_pred CChhHHHH--HHHHHHHHHhhHH---hCCCCCcEEEEec
Q psy4013 6 ANYGLMDQ--IAALHWVQQNIAL---FGGDPGNVTMMGH 39 (69)
Q Consensus 6 ~n~~~~D~--~~al~wi~~~~~~---~~~d~~~i~l~G~ 39 (69)
||+.+.|= ..|+.|..+-+-+ ++.+++|+++.=+
T Consensus 88 GnfSfgdYfK~eai~~awe~lt~~~~l~l~~~rl~vTv~ 126 (594)
T PRK01584 88 GNWSLGAYFKEESIKYSFEFLTSPDYLNIPKDKLYVTVF 126 (594)
T ss_pred ccccHhhhhHHHHHHHHHHHhccchhcCCCHHHeEEEEe
Confidence 68888776 3689999888854 8999999877654
No 317
>PRK08457 motB flagellar motor protein MotB; Reviewed
Probab=30.58 E-value=76 Score=20.94 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=23.3
Q ss_pred cCChhHHHHHH--HHHHHHHhhHHhCCCCCcEEEEecCh
Q psy4013 5 VANYGLMDQIA--ALHWVQQNIALFGGDPGNVTMMGHGT 41 (69)
Q Consensus 5 ~~n~~~~D~~~--al~wi~~~~~~~~~d~~~i~l~G~Sa 41 (69)
+.||.+...++ +.+|+. ..|.+++||.+.|+..
T Consensus 175 ~~NweLS~~RA~~V~~~L~----~~Gi~~~ri~~~GyG~ 209 (257)
T PRK08457 175 KDHYELAAARAYNVMKVLI----QYGINPNRLSFSSYGS 209 (257)
T ss_pred ccHHHHHHHHHHHHHHHHH----HcCCCHHHEEEEEecC
Confidence 46777776664 345554 3689999999998654
No 318
>COG4321 Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only]
Probab=30.39 E-value=68 Score=18.67 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=22.5
Q ss_pred ccCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEec
Q psy4013 4 RVANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGH 39 (69)
Q Consensus 4 ~~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~ 39 (69)
..+|+.-.==..+++|++...+....-+.++-+.+-
T Consensus 63 ~~~NlsSaLRV~clr~L~~~~~~~i~~~~~~p~~al 98 (102)
T COG4321 63 RDGNLSSALRVCCLRWLKLRLDGDIPAAAPSPIFAL 98 (102)
T ss_pred ccccHHHHHHHHHHHHHHHhcccCCCCCCCCchhhh
Confidence 456666655567888888777666555555444443
No 319
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=30.29 E-value=39 Score=22.13 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=14.5
Q ss_pred cEEEEecChHHHHHHHHHh
Q psy4013 33 NVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 33 ~i~l~G~SaGa~l~~~~~~ 51 (69)
...++|.|||+.+.+-...
T Consensus 113 G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 113 GTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred CCEEEEECHHHHhhhccce
Confidence 3789999999987665444
No 320
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=29.56 E-value=16 Score=22.46 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=13.8
Q ss_pred EEEecChHHHHHHHHHh
Q psy4013 35 TMMGHGTGAACINFLMI 51 (69)
Q Consensus 35 ~l~G~SaGa~l~~~~~~ 51 (69)
.|+|.||||..--++.+
T Consensus 25 NV~GSSAGAGSGeFHvY 41 (142)
T PF06658_consen 25 NVQGSSAGAGSGEFHVY 41 (142)
T ss_pred cccccccccCccHHHHH
Confidence 58899999987777665
No 321
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=29.44 E-value=70 Score=19.67 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=19.0
Q ss_pred hhHHhCCCCCcEEEEecChHHHHHH
Q psy4013 23 NIALFGGDPGNVTMMGHGTGAACIN 47 (69)
Q Consensus 23 ~~~~~~~d~~~i~l~G~SaGa~l~~ 47 (69)
-..+++.+|+++.++|+|.....++
T Consensus 147 ~~~~~~~~~~~~~~iGDs~~Di~aa 171 (214)
T PRK13288 147 ALELLGAKPEEALMVGDNHHDILAG 171 (214)
T ss_pred HHHHcCCCHHHEEEECCCHHHHHHH
Confidence 3445788999999999998655544
No 322
>PF06956 RtcR: Regulator of RNA terminal phosphate cyclase; InterPro: IPR009715 RtcR is a sigma54-dependent enhancer binding protein [] that activates transcription of the rtcBA operon. The product of the rtcA gene is an RNA 3 -terminal phosphate cyclase []. This domain is found at the N terminus of the RtcR sequence. RtcR, and other sigma54-dependent activators, contain IPR002078 from INTERPRO in the central region of the protein sequence.
Probab=29.35 E-value=1.4e+02 Score=19.17 Aligned_cols=51 Identities=22% Similarity=0.297 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCCc----EEEEecChHHHHHHHHHhCCCcccccee
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPGN----VTMMGHGTGAACINFLMISPTVMPDRII 61 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~~----i~l~G~SaGa~l~~~~~~~~~~~~~~~i 61 (69)
|-+++++.+ +.+.+..|..|+++ +.+.=-.-=++++++++...+-.+.+.+
T Consensus 82 WDfeeVY~~---l~dfa~~Y~Fd~e~E~YlvHITTGTHVaQIc~FLL~Esr~lPa~Ll 136 (183)
T PF06956_consen 82 WDFEEVYAA---LHDFARGYPFDPENEDYLVHITTGTHVAQICWFLLTESRYLPARLL 136 (183)
T ss_pred ccHHHHHHH---HHHHHhhCCCCCCCCceEEEecCCcHHHHHHHHHHHHhccccHHHh
Confidence 445555544 44556667788765 4443333346677777665444443333
No 323
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=29.29 E-value=1.1e+02 Score=18.37 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=17.8
Q ss_pred hHHhCCCCCcEEEEecChHHHHHH
Q psy4013 24 IALFGGDPGNVTMMGHGTGAACIN 47 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaGa~l~~ 47 (69)
..+++.+|+++.++|+|.....++
T Consensus 113 ~~~l~~~~~~~~~VgDs~~Di~~A 136 (181)
T PRK08942 113 AERLNIDLAGSPMVGDSLRDLQAA 136 (181)
T ss_pred HHHcCCChhhEEEEeCCHHHHHHH
Confidence 345688899999999997654444
No 324
>PF13711 DUF4160: Domain of unknown function (DUF4160)
Probab=29.21 E-value=76 Score=16.35 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=18.2
Q ss_pred cCChhHHHHHHHHHHHHHhhHHh
Q psy4013 5 VANYGLMDQIAALHWVQQNIALF 27 (69)
Q Consensus 5 ~~n~~~~D~~~al~wi~~~~~~~ 27 (69)
.|+..-.|...+.+|+.+|.+.+
T Consensus 39 ~G~l~~k~l~~i~~~i~~~~~~l 61 (66)
T PF13711_consen 39 EGFLPRKELRKILEWIEENQEEL 61 (66)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Confidence 45666789999999999987653
No 325
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=29.15 E-value=12 Score=24.71 Aligned_cols=16 Identities=19% Similarity=0.273 Sum_probs=12.5
Q ss_pred cEEEEecChHHHHHHH
Q psy4013 33 NVTMMGHGTGAACINF 48 (69)
Q Consensus 33 ~i~l~G~SaGa~l~~~ 48 (69)
-+...|+||||.++.-
T Consensus 118 G~~YiG~SAGA~ia~p 133 (224)
T COG3340 118 GTPYIGWSAGANIAGP 133 (224)
T ss_pred CCceEEeccCceeecC
Confidence 3668999999987653
No 326
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=29.00 E-value=2.1e+02 Score=20.17 Aligned_cols=42 Identities=12% Similarity=0.034 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhHHh-CCCCCcEEEEecChHHHHHHHHHhC
Q psy4013 11 MDQIAALHWVQQNIALF-GGDPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~-~~d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
.=+.+|+.-+++...+. +.+.++.+|+|.|==|-.++..+..
T Consensus 150 ka~vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa~ 192 (367)
T PF10142_consen 150 KAAVRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAAV 192 (367)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhcc
Confidence 34556777777776664 7789999999999888888877773
No 327
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=28.96 E-value=45 Score=20.89 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=14.8
Q ss_pred CcEEEEecChHHHHHHHH
Q psy4013 32 GNVTMMGHGTGAACINFL 49 (69)
Q Consensus 32 ~~i~l~G~SaGa~l~~~~ 49 (69)
+...+.|.|||+.+..-.
T Consensus 113 ~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 113 RGVVIGGTSAGAAVMGET 130 (210)
T ss_pred cCCeEEEcCHHHHHhhhc
Confidence 357999999999888764
No 328
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=28.83 E-value=72 Score=19.68 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=19.1
Q ss_pred hHHhCCCCCcEEEEecChHHHHHHH
Q psy4013 24 IALFGGDPGNVTMMGHGTGAACINF 48 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaGa~l~~~ 48 (69)
..+++.+|+++.++|+|..+..++.
T Consensus 152 ~~~~~~~p~~~l~igDs~~di~aA~ 176 (221)
T PRK10563 152 AEAMNVNVENCILVDDSSAGAQSGI 176 (221)
T ss_pred HHHcCCCHHHeEEEeCcHhhHHHHH
Confidence 4567889999999999987655443
No 329
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=28.82 E-value=1.2e+02 Score=17.37 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=16.5
Q ss_pred hHHhCCCCCcEEEEecChHHHHHH
Q psy4013 24 IALFGGDPGNVTMMGHGTGAACIN 47 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaGa~l~~ 47 (69)
..+++.+| ++.++|+|.....++
T Consensus 128 ~~~~~~~~-~~l~iGDs~~Di~aa 150 (154)
T TIGR01549 128 LESLGLPP-EVLHVGDNLNDIEGA 150 (154)
T ss_pred HHHcCCCC-CEEEEeCCHHHHHHH
Confidence 45567888 999999996654443
No 330
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=28.76 E-value=62 Score=17.27 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=15.5
Q ss_pred HHHhhHHhCCCCCcEEEEecCh
Q psy4013 20 VQQNIALFGGDPGNVTMMGHGT 41 (69)
Q Consensus 20 i~~~~~~~~~d~~~i~l~G~Sa 41 (69)
+++.+-..|.+++||.+.|...
T Consensus 59 V~~~L~~~gi~~~ri~~~~~G~ 80 (97)
T PF00691_consen 59 VKQYLVENGIPPERISVVGYGE 80 (97)
T ss_dssp HHHHHHHTTSSGGGEEEEEETT
T ss_pred HHHHHHHcCCChHhEEEEEEcc
Confidence 4444555788999998887653
No 331
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=28.74 E-value=37 Score=21.67 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=19.1
Q ss_pred HHHHHHHHhhHHhCCCCCcEEEEecChH
Q psy4013 15 AALHWVQQNIALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l~G~SaG 42 (69)
.|++|+.+ .++.+++++..+|+|.=
T Consensus 199 ~al~~l~~---~~gi~~~~v~afGD~~N 223 (270)
T PRK10513 199 TGVKSLAE---HLGIKPEEVMAIGDQEN 223 (270)
T ss_pred HHHHHHHH---HhCCCHHHEEEECCchh
Confidence 45666654 47899999999999854
No 332
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=28.65 E-value=58 Score=22.02 Aligned_cols=31 Identities=13% Similarity=0.053 Sum_probs=21.8
Q ss_pred HHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhC
Q psy4013 16 ALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 16 al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
+++++.++ |..+ =.+.|-|+||.+.+.++..
T Consensus 33 vL~aLee~----gi~~--d~v~GtSaGAi~ga~ya~g 63 (306)
T cd07225 33 VIKALEEA----GIPV--DMVGGTSIGAFIGALYAEE 63 (306)
T ss_pred HHHHHHHc----CCCC--CEEEEECHHHHHHHHHHcC
Confidence 44555543 4444 4688999999999888765
No 333
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=28.22 E-value=57 Score=23.59 Aligned_cols=30 Identities=13% Similarity=0.008 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhHHhCCCCCcEEEEecChH
Q psy4013 13 QIAALHWVQQNIALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 13 ~~~al~wi~~~~~~~~~d~~~i~l~G~SaG 42 (69)
...-.+++.+-+++.+.+.++|+|.|+=-|
T Consensus 64 P~dF~~~V~~iA~~~gf~~~~iiLGGDHLG 93 (426)
T PRK15458 64 PADFRGFVCQLADSLNFPQEALILGGDHLG 93 (426)
T ss_pred HHHHHHHHHHHHHHcCCChhhEEeecCCCC
Confidence 334457888889999999999999998766
No 334
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=28.20 E-value=60 Score=21.97 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=14.9
Q ss_pred EEEecChHHHHHHHHHh
Q psy4013 35 TMMGHGTGAACINFLMI 51 (69)
Q Consensus 35 ~l~G~SaGa~l~~~~~~ 51 (69)
.++|-|+||.+++++..
T Consensus 35 ~i~GTStGgiIA~~la~ 51 (312)
T cd07212 35 WIAGTSTGGILALALLH 51 (312)
T ss_pred EEEeeChHHHHHHHHHc
Confidence 58899999999988876
No 335
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=28.04 E-value=50 Score=20.77 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=18.5
Q ss_pred HHHHHHHHhhHHhCCCCCcEEEEecChH
Q psy4013 15 AALHWVQQNIALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l~G~SaG 42 (69)
.+++|+.+ +++.+++++..+|+|.-
T Consensus 162 ~al~~l~~---~~g~~~~~~i~~GD~~n 186 (236)
T TIGR02471 162 LALRYLSY---RWGLPLEQILVAGDSGN 186 (236)
T ss_pred HHHHHHHH---HhCCCHHHEEEEcCCcc
Confidence 34555554 57889999999999954
No 336
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=28.00 E-value=65 Score=22.39 Aligned_cols=37 Identities=5% Similarity=-0.000 Sum_probs=28.1
Q ss_pred ccCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecC
Q psy4013 4 RVANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHG 40 (69)
Q Consensus 4 ~~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~S 40 (69)
.+.+...+.+..+++.+.+...+.|....||.|.|-.
T Consensus 175 V~~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLN 211 (332)
T PRK00232 175 VADAITPERLEEVIRILHADLRRKGIAEPRIAVCGLN 211 (332)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 3455566777888888888777457788899999965
No 337
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=27.98 E-value=97 Score=19.28 Aligned_cols=24 Identities=4% Similarity=-0.078 Sum_probs=18.8
Q ss_pred HHhCCCCCcEEEEecChHHHHHHH
Q psy4013 25 ALFGGDPGNVTMMGHGTGAACINF 48 (69)
Q Consensus 25 ~~~~~d~~~i~l~G~SaGa~l~~~ 48 (69)
.+++.++++++.+|+|.....++-
T Consensus 154 ~~~~~~~~~~i~iGDs~~Di~aa~ 177 (219)
T PRK09552 154 RKLSDTNDFHIVIGDSITDLEAAK 177 (219)
T ss_pred HHhccCCCCEEEEeCCHHHHHHHH
Confidence 456788899999999988766553
No 338
>TIGR00758 UDG_fam4 uracil-DNA glycosylase, family 4. This well-conserved family of proteins is about 200 residues in length and homologous to the N-terminus of the DNA polymerase of phage SPO1 of Bacillus subtilis. The member from Thermus thermophilus HB8 is known to act as uracil-DNA glycosylase, an enzyme of DNA base excision repair. Its appearance as a domain of phage DNA polymerases could be consistent with uracil-DNA glycosylase activity.
Probab=27.89 E-value=1e+02 Score=18.92 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHH
Q psy4013 9 GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGA 43 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa 43 (69)
.-.++..+..|+.+.+... +|+-|.++|..|--
T Consensus 81 ~~~Ei~~c~~~l~~eI~~v--~P~~Iv~lG~~a~~ 113 (173)
T TIGR00758 81 TPEEVEACAPYLVKQIELI--RPKVIICLGRTAAQ 113 (173)
T ss_pred CHHHHHHHHHHHHHHHHhc--CCCEEEEECHHHHH
Confidence 4567778899999999874 68889999966543
No 339
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=27.51 E-value=1.4e+02 Score=17.76 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=16.1
Q ss_pred hHHhCCCCCcEEEEecChHH
Q psy4013 24 IALFGGDPGNVTMMGHGTGA 43 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaGa 43 (69)
..+++.+|+++.++|+|.-.
T Consensus 151 ~~~~~~~~~~~l~vgD~~~d 170 (184)
T TIGR01993 151 LREAGVDPERAIFFDDSARN 170 (184)
T ss_pred HHHhCCCccceEEEeCCHHH
Confidence 34578899999999999754
No 340
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=27.45 E-value=39 Score=20.73 Aligned_cols=28 Identities=11% Similarity=0.069 Sum_probs=20.3
Q ss_pred HHHhhHHhCCCCCcEEEEecChHHHHHH
Q psy4013 20 VQQNIALFGGDPGNVTMMGHGTGAACIN 47 (69)
Q Consensus 20 i~~~~~~~~~d~~~i~l~G~SaGa~l~~ 47 (69)
+.+-..+++.+++++..+|+|.--..++
T Consensus 101 l~~~~~~~gl~~~ev~~VGDs~~D~~~a 128 (183)
T PRK09484 101 FSDLLEKLAIAPEQVAYIGDDLIDWPVM 128 (183)
T ss_pred HHHHHHHhCCCHHHEEEECCCHHHHHHH
Confidence 4444556789999999999997544443
No 341
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=27.39 E-value=65 Score=20.93 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=22.6
Q ss_pred HHHHHHHHhhHHhCCC-CCcE-EEEecChHHHHHHHHHhC
Q psy4013 15 AALHWVQQNIALFGGD-PGNV-TMMGHGTGAACINFLMIS 52 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d-~~~i-~l~G~SaGa~l~~~~~~~ 52 (69)
-+++++.++ +.+ .+++ .+.|-|||+..++.++..
T Consensus 16 GVl~~L~e~----g~~l~~~~~~i~GtSaGAl~aa~~a~~ 51 (246)
T cd07222 16 GAAKALLRH----GKKLLKRVKRFAGASAGSLVAAVLLTA 51 (246)
T ss_pred HHHHHHHHc----CchhhccCCEEEEECHHHHHHHHHhcC
Confidence 456666654 222 1233 789999999999888743
No 342
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=27.33 E-value=80 Score=20.77 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=16.3
Q ss_pred EEEEecChHHHHHHHHHhCC
Q psy4013 34 VTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 34 i~l~G~SaGa~l~~~~~~~~ 53 (69)
-.+.|-|||+..++.++...
T Consensus 34 ~~i~GtSAGAl~aa~~asg~ 53 (252)
T cd07221 34 RMFFGASAGALHCVTFLSGL 53 (252)
T ss_pred CEEEEEcHHHHHHHHHHhCC
Confidence 46899999999988887644
No 343
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=27.19 E-value=62 Score=21.50 Aligned_cols=17 Identities=29% Similarity=0.301 Sum_probs=14.6
Q ss_pred EEEecChHHHHHHHHHh
Q psy4013 35 TMMGHGTGAACINFLMI 51 (69)
Q Consensus 35 ~l~G~SaGa~l~~~~~~ 51 (69)
.++|-|+||.+++.+..
T Consensus 44 li~GTStGgiiA~~la~ 60 (308)
T cd07211 44 YICGVSTGAILAFLLGL 60 (308)
T ss_pred EEEecChhHHHHHHHhc
Confidence 47899999999988875
No 344
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=27.01 E-value=41 Score=21.62 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=18.3
Q ss_pred HHHHHHHHhhHHhCCCCCcEEEEecCh
Q psy4013 15 AALHWVQQNIALFGGDPGNVTMMGHGT 41 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l~G~Sa 41 (69)
.|++|+.+ .+|.+++++..+|+|-
T Consensus 191 ~al~~l~~---~~gi~~~~v~afGD~~ 214 (272)
T PRK15126 191 AALAVLSQ---HLGLSLADCMAFGDAM 214 (272)
T ss_pred HHHHHHHH---HhCCCHHHeEEecCCH
Confidence 35555554 5789999999999984
No 345
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=27.00 E-value=66 Score=25.11 Aligned_cols=32 Identities=16% Similarity=0.389 Sum_probs=23.5
Q ss_pred CChhHHHHH--HHHHHHHHhhH-HhCCCCCcEEEE
Q psy4013 6 ANYGLMDQI--AALHWVQQNIA-LFGGDPGNVTMM 37 (69)
Q Consensus 6 ~n~~~~D~~--~al~wi~~~~~-~~~~d~~~i~l~ 37 (69)
||+.+.|=. .|++|..+-.- .|+.|++|+++.
T Consensus 90 Gn~sfgdYfK~eai~~awe~lt~~~~i~~~~l~vt 124 (865)
T PRK00252 90 GNFSFGDYFKEEAIEWAWELLTSVLGLPKEKLYVT 124 (865)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHhCCCHHHEEEE
Confidence 677776643 57788777764 499999998854
No 346
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=26.87 E-value=68 Score=19.46 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=15.3
Q ss_pred hHHhCCCCCcEEEEecCh
Q psy4013 24 IALFGGDPGNVTMMGHGT 41 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~Sa 41 (69)
..+++.+|+++.++|+|.
T Consensus 170 ~~~~~~~~~~~~~IgD~~ 187 (203)
T TIGR02252 170 LERAGISPEEALHIGDSL 187 (203)
T ss_pred HHHcCCChhHEEEECCCc
Confidence 455688999999999996
No 347
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=26.82 E-value=1.2e+02 Score=19.12 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=18.7
Q ss_pred hhHHhCCCCCcEEEEecChHHHHHH
Q psy4013 23 NIALFGGDPGNVTMMGHGTGAACIN 47 (69)
Q Consensus 23 ~~~~~~~d~~~i~l~G~SaGa~l~~ 47 (69)
-..+++.+|+++.++|+|.-...++
T Consensus 160 ~~~~l~~~p~~~l~IGDs~~Di~aA 184 (229)
T PRK13226 160 AAERIGVAPTDCVYVGDDERDILAA 184 (229)
T ss_pred HHHHhCCChhhEEEeCCCHHHHHHH
Confidence 3456789999999999997544333
No 348
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=26.79 E-value=41 Score=21.38 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=17.8
Q ss_pred HHHHHHHhhHHhCCCCCcEEEEecChH
Q psy4013 16 ALHWVQQNIALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 16 al~wi~~~~~~~~~d~~~i~l~G~SaG 42 (69)
+++++. +.++.+++++..+|+|--
T Consensus 203 ~l~~l~---~~~gi~~~e~i~~GD~~N 226 (272)
T PRK10530 203 RLTQWV---EAQGWSMKNVVAFGDNFN 226 (272)
T ss_pred HHHHHH---HHcCCCHHHeEEeCCChh
Confidence 444444 457899999999999954
No 349
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=26.70 E-value=48 Score=21.09 Aligned_cols=20 Identities=40% Similarity=0.567 Sum_probs=15.4
Q ss_pred CcEEEEecChHHHHHHHHHh
Q psy4013 32 GNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 32 ~~i~l~G~SaGa~l~~~~~~ 51 (69)
+...+.|.|||+.+..-...
T Consensus 116 ~G~v~~G~SAGA~i~~~~~~ 135 (217)
T cd03145 116 GGVVIGGTSAGAAVMSDTMI 135 (217)
T ss_pred cCCEEEEccHHHHhhhhccE
Confidence 34789999999988766543
No 350
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=26.30 E-value=63 Score=20.81 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.5
Q ss_pred EEEecChHHHHHHHHHhC
Q psy4013 35 TMMGHGTGAACINFLMIS 52 (69)
Q Consensus 35 ~l~G~SaGa~l~~~~~~~ 52 (69)
.+.|-|+||.+++.+...
T Consensus 37 ~i~GtS~G~iia~~l~~~ 54 (258)
T cd07199 37 LIAGTSTGGIIALGLALG 54 (258)
T ss_pred eeeeccHHHHHHHHHhcC
Confidence 478999999999988775
No 351
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=26.29 E-value=74 Score=19.48 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=15.9
Q ss_pred hhHHhCCCCCcEEEEecCh
Q psy4013 23 NIALFGGDPGNVTMMGHGT 41 (69)
Q Consensus 23 ~~~~~~~d~~~i~l~G~Sa 41 (69)
-+.+++.+|+++.++|+|.
T Consensus 159 ~~~~~~~~~~~~~~igDs~ 177 (221)
T TIGR02253 159 ALKRLGVKPEEAVMVGDRL 177 (221)
T ss_pred HHHHcCCChhhEEEECCCh
Confidence 3456788999999999996
No 352
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=26.23 E-value=50 Score=19.66 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=20.4
Q ss_pred HHHhhHHhCCCCCcEEEEecChHHHHHH
Q psy4013 20 VQQNIALFGGDPGNVTMMGHGTGAACIN 47 (69)
Q Consensus 20 i~~~~~~~~~d~~~i~l~G~SaGa~l~~ 47 (69)
+.+-..+++.+++++..+|+|.-...++
T Consensus 81 ~~~~~~~~~~~~~~~~~vGDs~~D~~~~ 108 (154)
T TIGR01670 81 FSDILEKLALAPENVAYIGDDLIDWPVM 108 (154)
T ss_pred HHHHHHHcCCCHHHEEEECCCHHHHHHH
Confidence 3444456789999999999997654443
No 353
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=26.11 E-value=69 Score=17.65 Aligned_cols=35 Identities=9% Similarity=0.148 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHH
Q psy4013 9 GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGA 43 (69)
Q Consensus 9 ~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa 43 (69)
.......+..|+.--+++|+.++..|-+.-++.-|
T Consensus 8 ~~Ws~~~V~~WL~Wav~ef~L~~~~i~~~~f~m~G 42 (78)
T cd08538 8 EYWTKRHVWEWLQFCCDQYKLDANCISFCHFNISG 42 (78)
T ss_pred cccCHHHHHHHHHHHHHHcCCCccccchhhcCCCH
Confidence 34455677888888889999988766666555443
No 354
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=26.11 E-value=1.1e+02 Score=19.53 Aligned_cols=25 Identities=0% Similarity=0.021 Sum_probs=19.8
Q ss_pred hHHhCCCCCcEEEEecChHHHHHHH
Q psy4013 24 IALFGGDPGNVTMMGHGTGAACINF 48 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaGa~l~~~ 48 (69)
+.+++.+|++..++|+|..+..++.
T Consensus 174 ~~~~~~~~~~~l~vgDs~~Di~aA~ 198 (248)
T PLN02770 174 LEVLKVSKDHTFVFEDSVSGIKAGV 198 (248)
T ss_pred HHHhCCChhHEEEEcCCHHHHHHHH
Confidence 4567889999999999987665554
No 355
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=26.06 E-value=1e+02 Score=16.80 Aligned_cols=41 Identities=7% Similarity=0.011 Sum_probs=24.7
Q ss_pred cCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHH
Q psy4013 5 VANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACIN 47 (69)
Q Consensus 5 ~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~ 47 (69)
|.+.-......+..|+..-..+|+.++ .+..+ .=.|-.|+.
T Consensus 7 p~DP~~Ws~~~V~~WL~w~~~ef~L~~-~~~~F-~mnG~~LC~ 47 (76)
T cd08532 7 SPDPYQWSPANVQKWLLWTEHQYRLPP-PPRCF-ELNGKDLCA 47 (76)
T ss_pred CCChhhcCHHHHHHHHHHHHHHhCCCC-chhcC-CCCHHHHHc
Confidence 334444555667778888888898877 44444 334444443
No 356
>PLN02900 alanyl-tRNA synthetase
Probab=25.94 E-value=68 Score=25.38 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=24.6
Q ss_pred CChhHHHHH--HHHHHHHHhhHH-hCCCCCcEEEE
Q psy4013 6 ANYGLMDQI--AALHWVQQNIAL-FGGDPGNVTMM 37 (69)
Q Consensus 6 ~n~~~~D~~--~al~wi~~~~~~-~~~d~~~i~l~ 37 (69)
||+.+.|=. .|+.|..+-.-+ ++.+|+|+++.
T Consensus 108 GnfSfgdYfK~eaI~~awe~lT~~l~i~~~~l~vT 142 (936)
T PLN02900 108 GNWSFGDYFKKEAIGWAWELLTKVYGLPADRLYAT 142 (936)
T ss_pred hccchhhhhHHHHHHHHHHHHHHhcCCCHHHEEEE
Confidence 677776654 688888887765 99999999765
No 357
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=25.75 E-value=71 Score=21.22 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=16.6
Q ss_pred hHHhCCCCCcEEEEecChHHHHHHHHH
Q psy4013 24 IALFGGDPGNVTMMGHGTGAACINFLM 50 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaGa~l~~~~~ 50 (69)
..++|..| -.++|||.|-..+++..
T Consensus 78 l~~~Gi~P--~~v~GhSlGE~aA~~aa 102 (318)
T PF00698_consen 78 LRSWGIKP--DAVIGHSLGEYAALVAA 102 (318)
T ss_dssp HHHTTHCE--SEEEESTTHHHHHHHHT
T ss_pred hccccccc--ceeeccchhhHHHHHHC
Confidence 34556444 66789999977666543
No 358
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=25.56 E-value=1.2e+02 Score=18.28 Aligned_cols=24 Identities=13% Similarity=-0.039 Sum_probs=18.1
Q ss_pred hHHhCCCCCcEEEEecChHHHHHH
Q psy4013 24 IALFGGDPGNVTMMGHGTGAACIN 47 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaGa~l~~ 47 (69)
..+++.+|++..++|+|.-...++
T Consensus 116 ~~~~~~~~~~~v~VGDs~~Di~aA 139 (176)
T TIGR00213 116 RKELHIDMAQSYMVGDKLEDMQAG 139 (176)
T ss_pred HHHcCcChhhEEEEcCCHHHHHHH
Confidence 455788999999999997644433
No 359
>PF05362 Lon_C: Lon protease (S16) C-terminal proteolytic domain; InterPro: IPR008269 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the C-terminal proteolytic domain of the archael, bacterial and eukaryotic Lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (Lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1Z0E_E 1Z0G_E 1Z0T_F 1Z0C_A 1Z0V_A 1Z0B_A 1Z0W_A 2KJP_A 2X36_F 3K1J_B ....
Probab=25.51 E-value=1.9e+02 Score=18.56 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhHHhCCCCC-----cEE---------EEecChHHHHHHHHH
Q psy4013 11 MDQIAALHWVQQNIALFGGDPG-----NVT---------MMGHGTGAACINFLM 50 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~-----~i~---------l~G~SaGa~l~~~~~ 50 (69)
+-...|+.|++.+..+++.+++ .++ .-|.|||-.++..+.
T Consensus 68 ES~~~A~~~~k~~~~~~~~~~~~~~~~dihi~~~~~~~~~dGpSAgla~~~al~ 121 (204)
T PF05362_consen 68 ESAKIAFSYLKANLKRIGIDPSNFDNYDIHIHVPDGAIPKDGPSAGLAIALALY 121 (204)
T ss_dssp HHHHHHHHHHHHHHHCCSSTCCHHGCEEEEEEESSTTTTCCGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccccccccceeEEEecccccccCCCchhHHHHHHHHH
Confidence 3345688999999988877653 222 247889865554443
No 360
>PRK11587 putative phosphatase; Provisional
Probab=25.44 E-value=1.4e+02 Score=18.45 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=18.2
Q ss_pred hHHhCCCCCcEEEEecChHHHHHH
Q psy4013 24 IALFGGDPGNVTMMGHGTGAACIN 47 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaGa~l~~ 47 (69)
..+++.+|++..++|+|.-+..++
T Consensus 148 ~~~~g~~p~~~l~igDs~~di~aA 171 (218)
T PRK11587 148 AQLLGLAPQECVVVEDAPAGVLSG 171 (218)
T ss_pred HHHcCCCcccEEEEecchhhhHHH
Confidence 445788999999999997654433
No 361
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=25.32 E-value=78 Score=19.61 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=20.3
Q ss_pred HHhhHHhCCCCCcEEEEecChHHHHHH
Q psy4013 21 QQNIALFGGDPGNVTMMGHGTGAACIN 47 (69)
Q Consensus 21 ~~~~~~~~~d~~~i~l~G~SaGa~l~~ 47 (69)
...+.+++.+|+++.++|+|....-++
T Consensus 155 ~~~~~~~~~~~~~~~~igDs~~Di~aA 181 (222)
T PRK10826 155 LNCAAKLGVDPLTCVALEDSFNGMIAA 181 (222)
T ss_pred HHHHHHcCCCHHHeEEEcCChhhHHHH
Confidence 445566889999999999998644443
No 362
>PRK00565 rplV 50S ribosomal protein L22; Reviewed
Probab=25.08 E-value=1.5e+02 Score=17.10 Aligned_cols=33 Identities=15% Similarity=-0.084 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHhhHH-hCCCCCcEEEEecC
Q psy4013 8 YGLMDQIAALHWVQQNIAL-FGGDPGNVTMMGHG 40 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~-~~~d~~~i~l~G~S 40 (69)
.+-..+...|+-...|+.. ++.|++++++.---
T Consensus 42 k~a~~i~k~L~sA~aNA~~~~g~d~~~L~I~~~~ 75 (112)
T PRK00565 42 KAARLVKKVLKSAIANAENNHGLDIDNLVVKEAY 75 (112)
T ss_pred hHHHHHHHHHHHHHHHHHhccCCChhHeEEEEEE
Confidence 3445667777777788877 88999998887533
No 363
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=24.97 E-value=1e+02 Score=18.19 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=16.8
Q ss_pred HhhHHhCCCCCcEEEEecChHH
Q psy4013 22 QNIALFGGDPGNVTMMGHGTGA 43 (69)
Q Consensus 22 ~~~~~~~~d~~~i~l~G~SaGa 43 (69)
.-..+++.+|+++.++|+|.-.
T Consensus 149 ~~~~~~~~~~~~~v~vgD~~~d 170 (185)
T TIGR01990 149 AAAEGLGVSPSECIGIEDAQAG 170 (185)
T ss_pred HHHHHcCCCHHHeEEEecCHHH
Confidence 3455678889999999999643
No 364
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=24.97 E-value=1.9e+02 Score=18.20 Aligned_cols=39 Identities=5% Similarity=0.022 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhHHhCCCC-CcEEEEecChHHHHHHHHHh
Q psy4013 13 QIAALHWVQQNIALFGGDP-GNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 13 ~~~al~wi~~~~~~~~~d~-~~i~l~G~SaGa~l~~~~~~ 51 (69)
+..+++-+.+...+..-+. .+|.+-.+|.||......+.
T Consensus 47 ~~~~~~~l~~~l~~~~~~~~~~il~H~FSnGG~~~~~~l~ 86 (240)
T PF05705_consen 47 LAPAADKLLELLSDSQSASPPPILFHSFSNGGSFLYSQLL 86 (240)
T ss_pred hHHHHHHHHHHhhhhccCCCCCEEEEEEECchHHHHHHHH
Confidence 3444555555555544443 48999999998766666555
No 365
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=24.97 E-value=80 Score=20.04 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=18.2
Q ss_pred HHhhHHhCCCCCcEEEEecChHH
Q psy4013 21 QQNIALFGGDPGNVTMMGHGTGA 43 (69)
Q Consensus 21 ~~~~~~~~~d~~~i~l~G~SaGa 43 (69)
.+.+.+|..|+++.+++|++..-
T Consensus 112 ~~~~~~~~iD~~~s~~VGD~~~D 134 (181)
T COG0241 112 LSALKEYNIDLSRSYVVGDRLTD 134 (181)
T ss_pred HHHHHHhCCCccceEEecCcHHH
Confidence 34456688999999999999743
No 366
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=24.89 E-value=76 Score=22.92 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhHHhCCCCCcEEEEecChH
Q psy4013 13 QIAALHWVQQNIALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 13 ~~~al~wi~~~~~~~~~d~~~i~l~G~SaG 42 (69)
...-.+++.+-+++.+.+.++|+|.|+=-|
T Consensus 60 P~dF~~~V~~iA~~~gf~~~~iiLggDHlG 89 (420)
T TIGR02810 60 PADFRDFVETIADRIGFPRDRLILGGDHLG 89 (420)
T ss_pred HHHHHHHHHHHHHHcCCChhcEEeecCCCC
Confidence 344457888889999999999999998766
No 367
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=24.62 E-value=89 Score=19.31 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=11.7
Q ss_pred CCCCcEEEEecChHH
Q psy4013 29 GDPGNVTMMGHGTGA 43 (69)
Q Consensus 29 ~d~~~i~l~G~SaGa 43 (69)
..+.+|.+.|+|--.
T Consensus 30 ~~~~~iv~lGDSit~ 44 (214)
T cd01820 30 QKEPDVVFIGDSITQ 44 (214)
T ss_pred cCCCCEEEECchHhh
Confidence 457899999999543
No 368
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=24.51 E-value=79 Score=22.86 Aligned_cols=30 Identities=13% Similarity=0.058 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhHHhCCCCCcEEEEecChH
Q psy4013 13 QIAALHWVQQNIALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 13 ~~~al~wi~~~~~~~~~d~~~i~l~G~SaG 42 (69)
...-.+++.+-+++.+.+.++|+|.|+=-|
T Consensus 61 P~dF~~~V~~iA~~~gf~~~~iiLggDHlG 90 (421)
T PRK15052 61 PADFREFVYGIADKVGFPRERIILGGDHLG 90 (421)
T ss_pred HHHHHHHHHHHHHHcCCChhcEEeecCCCC
Confidence 344457888889999999999999998766
No 369
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=24.49 E-value=79 Score=21.08 Aligned_cols=19 Identities=11% Similarity=0.058 Sum_probs=15.9
Q ss_pred EEEEecChHHHHHHHHHhC
Q psy4013 34 VTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 34 i~l~G~SaGa~l~~~~~~~ 52 (69)
=.+.|-|+||...+.++..
T Consensus 40 d~v~GtSaGAiiga~ya~g 58 (269)
T cd07227 40 DAIGGTSIGSFVGGLYARE 58 (269)
T ss_pred cEEEEECHHHHHHHHHHcC
Confidence 4678999999999888765
No 370
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=24.34 E-value=53 Score=20.32 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=20.0
Q ss_pred HHHHHHHhhHHhCCCCCcEEEEecChHHH
Q psy4013 16 ALHWVQQNIALFGGDPGNVTMMGHGTGAA 44 (69)
Q Consensus 16 al~wi~~~~~~~~~d~~~i~l~G~SaGa~ 44 (69)
+++|+.+ .++.+++++..+|+|.--.
T Consensus 151 ~i~~l~~---~~~i~~~~~i~iGDs~ND~ 176 (215)
T TIGR01487 151 GVEKLKE---LLGIKPEEVAAIGDSENDI 176 (215)
T ss_pred HHHHHHH---HhCCCHHHEEEECCCHHHH
Confidence 6666664 4788999999999997643
No 371
>PRK10279 hypothetical protein; Provisional
Probab=24.32 E-value=79 Score=21.40 Aligned_cols=32 Identities=9% Similarity=0.093 Sum_probs=22.9
Q ss_pred HHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhC
Q psy4013 15 AALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~ 52 (69)
-+++++.+ .|..+ =.+.|-|+||...+.++..
T Consensus 22 GVL~aL~E----~gi~~--d~i~GtS~GAlvga~yA~g 53 (300)
T PRK10279 22 GVINALKK----VGIEI--DIVAGCSIGSLVGAAYACD 53 (300)
T ss_pred HHHHHHHH----cCCCc--CEEEEEcHHHHHHHHHHcC
Confidence 45566655 34544 6789999999999887754
No 372
>smart00757 CRA CT11-RanBPM. protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)
Probab=24.26 E-value=80 Score=16.94 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhHHhCCCC
Q psy4013 12 DQIAALHWVQQNIALFGGDP 31 (69)
Q Consensus 12 D~~~al~wi~~~~~~~~~d~ 31 (69)
++..|+.|.+++...|..+.
T Consensus 2 ~~~eAi~yar~~l~~~~~~~ 21 (99)
T smart00757 2 KIEEALAYARELLAPFAKEH 21 (99)
T ss_pred cHHHHHHHHHHHHhhhcccC
Confidence 56789999999999988765
No 373
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=24.16 E-value=89 Score=19.03 Aligned_cols=20 Identities=15% Similarity=0.150 Sum_probs=16.2
Q ss_pred HhhHHh-CCCCCcEEEEecCh
Q psy4013 22 QNIALF-GGDPGNVTMMGHGT 41 (69)
Q Consensus 22 ~~~~~~-~~d~~~i~l~G~Sa 41 (69)
.-+.++ +.+|+++.++|+|.
T Consensus 160 ~~~~~~~~~~~~~~v~igD~~ 180 (224)
T TIGR02254 160 YALERMPKFSKEEVLMIGDSL 180 (224)
T ss_pred HHHHHhcCCCchheEEECCCc
Confidence 344567 88999999999996
No 374
>KOG2385|consensus
Probab=24.12 E-value=3e+02 Score=20.99 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=16.1
Q ss_pred CCcEEEEecChHHHHHHHHHh
Q psy4013 31 PGNVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 31 ~~~i~l~G~SaGa~l~~~~~~ 51 (69)
.+.|+|.|+|-|+-.....+.
T Consensus 446 ~RPVTLVGFSLGARvIf~CL~ 466 (633)
T KOG2385|consen 446 NRPVTLVGFSLGARVIFECLL 466 (633)
T ss_pred CCceeEeeeccchHHHHHHHH
Confidence 446999999999977664444
No 375
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=23.98 E-value=1.5e+02 Score=19.65 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=20.5
Q ss_pred hHHhCCCCCcEEEEecChHHHHHHHHHhCC
Q psy4013 24 IALFGGDPGNVTMMGHGTGAACINFLMISP 53 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~ 53 (69)
.++.+..+ -.+.|-|+||...+.++...
T Consensus 33 L~e~gi~~--~~iaGtS~GAiva~l~A~g~ 60 (306)
T COG1752 33 LEEAGIPI--DVIAGTSAGAIVAALYAAGM 60 (306)
T ss_pred HHHcCCCc--cEEEecCHHHHHHHHHHcCC
Confidence 33444444 67899999999999888753
No 376
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=23.95 E-value=71 Score=19.43 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=18.4
Q ss_pred HHHHHHHhhHHhCCCCCcEEEEecChHHH
Q psy4013 16 ALHWVQQNIALFGGDPGNVTMMGHGTGAA 44 (69)
Q Consensus 16 al~wi~~~~~~~~~d~~~i~l~G~SaGa~ 44 (69)
+++++.+ +++.+++++..+|+|.--.
T Consensus 167 ~~~~~~~---~~~~~~~~~~~~GD~~nD~ 192 (204)
T TIGR01484 167 ALQALLK---ELNGKRDEILAFGDSGNDE 192 (204)
T ss_pred HHHHHHH---HhCCCHHHEEEEcCCHHHH
Confidence 4444443 4678899999999987653
No 377
>PF14300 DUF4375: Domain of unknown function (DUF4375); PDB: 3VJZ_A.
Probab=23.72 E-value=1.1e+02 Score=17.69 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhHHh
Q psy4013 14 IAALHWVQQNIALF 27 (69)
Q Consensus 14 ~~al~wi~~~~~~~ 27 (69)
....+||++|.++|
T Consensus 110 ~l~~~Yv~~h~~~F 123 (123)
T PF14300_consen 110 ELLARYVREHPEKF 123 (123)
T ss_dssp HHHHHHHHHTHHHH
T ss_pred HHHHHHHHHCHhhC
Confidence 35679999998876
No 378
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=23.45 E-value=2.3e+02 Score=18.83 Aligned_cols=51 Identities=14% Similarity=0.226 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc--cccceeeccccc
Q psy4013 14 IAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV--MPDRIIDQSSWL 67 (69)
Q Consensus 14 ~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~--~~~~~i~~sg~~ 67 (69)
..|++++.+.+.+. |++|++..-..=-+++.++...|.. +.++.+.|.|.+
T Consensus 100 ~~A~~~l~~~~~~~---~~~vtivaiGPLTNlA~al~~~P~i~~~ik~iviMGG~~ 152 (304)
T cd02650 100 ESAADFLIELANEY---PGELTLVAVGPLTNLALALARDPDFAKLVKQVVVMGGAF 152 (304)
T ss_pred cCHHHHHHHHHHhC---CCCeEEEECCcHHHHHHHHHHCcHHHhhcCEEEEeCccc
Confidence 35677777666543 5678888766666777777776664 556778787764
No 379
>KOG2214|consensus
Probab=23.37 E-value=50 Score=24.58 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=16.9
Q ss_pred EEEEecChHHHHHHHHHhCCC
Q psy4013 34 VTMMGHGTGAACINFLMISPT 54 (69)
Q Consensus 34 i~l~G~SaGa~l~~~~~~~~~ 54 (69)
=++.|-|+||.+++.+.....
T Consensus 204 ~IIsGsS~GaivAsl~~v~~~ 224 (543)
T KOG2214|consen 204 NIISGSSAGAIVASLVGVRSN 224 (543)
T ss_pred hhhcCCchhHHHHHHHhhcch
Confidence 357899999999998887643
No 380
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=23.25 E-value=2.6e+02 Score=19.26 Aligned_cols=53 Identities=9% Similarity=0.161 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCccccceeecccccc
Q psy4013 8 YGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPDRIIDQSSWLQ 68 (69)
Q Consensus 8 ~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~~~~~~i~~sg~~~ 68 (69)
.+..|...++.|+++ +| ++++-|.--|.-|-.+.-+..... ....|..-|+++
T Consensus 83 ~g~~sL~~V~dwl~~----~g--~~~~GLIAaSLSaRIAy~Va~~i~--lsfLitaVGVVn 135 (294)
T PF02273_consen 83 IGKASLLTVIDWLAT----RG--IRRIGLIAASLSARIAYEVAADIN--LSFLITAVGVVN 135 (294)
T ss_dssp HHHHHHHHHHHHHHH----TT-----EEEEEETTHHHHHHHHTTTS----SEEEEES--S-
T ss_pred HhHHHHHHHHHHHHh----cC--CCcchhhhhhhhHHHHHHHhhccC--cceEEEEeeeee
Confidence 356788888999985 33 456999999999988887776442 333454446554
No 381
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=23.20 E-value=2.7e+02 Score=19.41 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=17.6
Q ss_pred CcEEEEecChHHHHHHHHHhC
Q psy4013 32 GNVTMMGHGTGAACINFLMIS 52 (69)
Q Consensus 32 ~~i~l~G~SaGa~l~~~~~~~ 52 (69)
.+|.-+|-.|||-+++...+.
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~ 108 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAF 108 (315)
T ss_pred ceEEEECCChHHHHHHHHHHH
Confidence 589999999999888877664
No 382
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=22.65 E-value=1.2e+02 Score=16.60 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=14.9
Q ss_pred HHHhhHHhCCCCCcEEEEecCh
Q psy4013 20 VQQNIALFGGDPGNVTMMGHGT 41 (69)
Q Consensus 20 i~~~~~~~~~d~~~i~l~G~Sa 41 (69)
+.+.+-+.|.++++|.+.|+..
T Consensus 60 V~~~L~~~gi~~~ri~~~g~G~ 81 (104)
T TIGR02802 60 VKDYLQAKGVSASQIETVSYGE 81 (104)
T ss_pred HHHHHHHcCCCHHHeEEEeecc
Confidence 3344445688999998888643
No 383
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=22.61 E-value=1.4e+02 Score=18.10 Aligned_cols=30 Identities=17% Similarity=-0.034 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhHHhCCCCCcEEEEecCh
Q psy4013 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGT 41 (69)
Q Consensus 10 ~~D~~~al~wi~~~~~~~~~d~~~i~l~G~Sa 41 (69)
..|...+++.+.+.+.+. +++-|.+.|+=-
T Consensus 23 ~~~~~~~~~~~~~~~~~~--~~d~i~~~GD~~ 52 (223)
T cd00840 23 REDQFEAFEEIVELAIEE--KVDFVLIAGDLF 52 (223)
T ss_pred hHHHHHHHHHHHHHHHhc--CCCEEEECCccc
Confidence 567778888888877764 466788888753
No 384
>PF05139 Erythro_esteras: Erythromycin esterase; InterPro: IPR007815 This family includes erythromycin esterase enzymes [, ] that confer resistance to the erythromycin antibiotic.; GO: 0046677 response to antibiotic; PDB: 2QGM_A 3B55_A 2RAD_B.
Probab=22.51 E-value=1.2e+02 Score=20.41 Aligned_cols=36 Identities=8% Similarity=0.120 Sum_probs=21.8
Q ss_pred CChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChH
Q psy4013 6 ANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 6 ~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaG 42 (69)
+.|..+++..-++|++++-.... ..++|.+.|.-.-
T Consensus 36 ~~w~t~E~~~L~~WmR~~N~~~~-~~~~v~f~G~D~q 71 (346)
T PF05139_consen 36 WFWRTEEMLDLFEWMREYNEDRP-PGDKVRFYGFDMQ 71 (346)
T ss_dssp CCC-CHHHHHHHHHHHHHHHSTT--SS--EEEEEE-S
T ss_pred cccCcHHHHHHHHHHHHHhccCC-CCCceEEEEeccc
Confidence 34556788999999998655432 3456888886543
No 385
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.29 E-value=2.1e+02 Score=18.53 Aligned_cols=32 Identities=16% Similarity=-0.034 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecC
Q psy4013 7 NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHG 40 (69)
Q Consensus 7 n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~S 40 (69)
+.-..|...+++++.+.+.+. +++-|.+.|+=
T Consensus 18 ~~~~~~~~~~l~~l~~~~~~~--~~D~lli~GDi 49 (253)
T TIGR00619 18 VSRLAEQKAFLDDLLEFAKAE--QIDALLVAGDV 49 (253)
T ss_pred CChHHHHHHHHHHHHHHHHHc--CCCEEEECCcc
Confidence 344577888899998887765 46678888874
No 386
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=22.23 E-value=81 Score=24.37 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=15.3
Q ss_pred EEEEecChHHHHHHHHHh
Q psy4013 34 VTMMGHGTGAACINFLMI 51 (69)
Q Consensus 34 i~l~G~SaGa~l~~~~~~ 51 (69)
=.++|-||||.+++.+..
T Consensus 68 d~iaGTSAGAInaa~lA~ 85 (739)
T TIGR03607 68 DVISGTSAGGINGVLLAY 85 (739)
T ss_pred ceEEeeCHHHHHHHHHHc
Confidence 467899999999888886
No 387
>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....
Probab=22.12 E-value=88 Score=16.92 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=18.4
Q ss_pred CChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHH
Q psy4013 6 ANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACIN 47 (69)
Q Consensus 6 ~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~ 47 (69)
.+.-......+..|+.....+|...+-++.-. .-.|..|+.
T Consensus 15 ~DP~~Wt~~~V~~Wl~w~~~~f~l~~~~~~~f-~~~G~~Lc~ 55 (84)
T PF02198_consen 15 KDPRLWTKEDVLQWLRWVVREFDLPAIDFSRF-NMNGRELCS 55 (84)
T ss_dssp SSGGG--HHHHHHHHHHHHHHTT-SSCHGGGG-TS-HHHHHH
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCcCchhcc-CCCHHHHHH
Confidence 34444555556666666666677654222222 234555544
No 388
>PRK09038 flagellar motor protein MotD; Reviewed
Probab=21.89 E-value=1.4e+02 Score=20.03 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=22.7
Q ss_pred CChhHHHHHH--HHHHHHHhhHHhCCCCCcEEEEecCh
Q psy4013 6 ANYGLMDQIA--ALHWVQQNIALFGGDPGNVTMMGHGT 41 (69)
Q Consensus 6 ~n~~~~D~~~--al~wi~~~~~~~~~d~~~i~l~G~Sa 41 (69)
.||.+...++ +.+++. ..|.+++||.+.|+..
T Consensus 184 ~Nw~LS~~RA~aV~~~L~----~~Gi~~~ri~~~G~G~ 217 (281)
T PRK09038 184 SNWELSAARAASVVRLLA----DDGVAPSRLAAVGYGE 217 (281)
T ss_pred cHHHHHHHHHHHHHHHHH----HcCCCHHHEEEEEECC
Confidence 4888877664 345554 4589999999998664
No 389
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=21.62 E-value=1.5e+02 Score=20.23 Aligned_cols=23 Identities=17% Similarity=0.039 Sum_probs=16.3
Q ss_pred CCCCCcEEEEecChHHHHHHHHH
Q psy4013 28 GGDPGNVTMMGHGTGAACINFLM 50 (69)
Q Consensus 28 ~~d~~~i~l~G~SaGa~l~~~~~ 50 (69)
+++....++.|||-|-..+....
T Consensus 81 ~~~~~p~~~aGHSlGEysAl~~a 103 (310)
T COG0331 81 GLGVKPDFVAGHSLGEYSALAAA 103 (310)
T ss_pred cCCCCCceeecccHhHHHHHHHc
Confidence 33566679999999966655543
No 390
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=21.60 E-value=1.7e+02 Score=18.07 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhHHhCCCCCcEEEEecChHH
Q psy4013 11 MDQIAALHWVQQNIALFGGDPGNVTMMGHGTGA 43 (69)
Q Consensus 11 ~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa 43 (69)
.=+..||+|+++ ..+.+|.|.+||-=-
T Consensus 49 ~A~i~AL~~l~~------~~~~~v~l~tDS~yv 75 (154)
T COG0328 49 RALIEALEALKE------LGACEVTLYTDSKYV 75 (154)
T ss_pred HHHHHHHHHHHh------cCCceEEEEecHHHH
Confidence 445577777776 668899999999653
No 391
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=21.59 E-value=1.3e+02 Score=17.66 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=17.9
Q ss_pred hHHhCCCCCcEEEEecChHHHHHH
Q psy4013 24 IALFGGDPGNVTMMGHGTGAACIN 47 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaGa~l~~ 47 (69)
..+++.+|+++.++|+|....-++
T Consensus 152 ~~~~~~~~~~~v~IgD~~~di~aA 175 (185)
T TIGR02009 152 AELLGVSPNECVVFEDALAGVQAA 175 (185)
T ss_pred HHHcCCCHHHeEEEeCcHhhHHHH
Confidence 345688899999999997654443
No 392
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=21.48 E-value=83 Score=25.34 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=20.3
Q ss_pred HHHHHHHHhhHHhCCCCCcEEE-EecChH
Q psy4013 15 AALHWVQQNIALFGGDPGNVTM-MGHGTG 42 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l-~G~SaG 42 (69)
.|++|+.. +|+.+.++++| +|+|..
T Consensus 959 qAlRyL~~---rwgi~l~~v~VfaGdSGn 984 (1050)
T TIGR02468 959 QALRYLFV---RWGIELANMAVFVGESGD 984 (1050)
T ss_pred HHHHHHHH---HcCCChHHeEEEeccCCC
Confidence 67888875 58999999966 998876
No 393
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=21.44 E-value=58 Score=21.38 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=14.4
Q ss_pred cEEEEecChHHHHHHHHHh
Q psy4013 33 NVTMMGHGTGAACINFLMI 51 (69)
Q Consensus 33 ~i~l~G~SaGa~l~~~~~~ 51 (69)
...+.|.|||+.+..-...
T Consensus 116 G~vi~G~SAGA~i~~~~~~ 134 (250)
T TIGR02069 116 GIILGGTSAGAAVMSDTMI 134 (250)
T ss_pred CCeEEEccHHHHhcccceE
Confidence 3789999999987654443
No 394
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=21.41 E-value=1.3e+02 Score=18.13 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=15.8
Q ss_pred hHHhCCCCCcEEEEecChH
Q psy4013 24 IALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaG 42 (69)
..+++.+|+++.++|+|.-
T Consensus 158 ~~~~~~~p~~~~~vgD~~~ 176 (198)
T TIGR01428 158 LEALGVPPDEVLFVASNPW 176 (198)
T ss_pred HHHhCCChhhEEEEeCCHH
Confidence 4457889999999999983
No 395
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR).
Probab=21.40 E-value=2.7e+02 Score=18.79 Aligned_cols=50 Identities=14% Similarity=0.198 Sum_probs=33.9
Q ss_pred HHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHHHHhCCCc--cccceeeccccc
Q psy4013 15 AALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTV--MPDRIIDQSSWL 67 (69)
Q Consensus 15 ~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~~~~~~~~--~~~~~i~~sg~~ 67 (69)
.|.+++.+.+.++ |++|++..-..=-+++.++...|.. +.++.+.|.|.+
T Consensus 103 ~a~~~i~~~~~~~---~~~vtiva~GPLTNlA~al~~~p~~~~~i~~iviMGG~~ 154 (306)
T cd02649 103 HAVDAIIRLVREY---PGEITLVALGPLTNLALAYRLDPSLPQKIKRLYIMGGNR 154 (306)
T ss_pred CHHHHHHHHHHhC---CCCeEEEecccHHHHHHHHHHChHHHHhcCeEEEeCCCc
Confidence 4777777777664 4568887755556777777776654 556777777764
No 396
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=21.39 E-value=1.4e+02 Score=16.70 Aligned_cols=42 Identities=17% Similarity=0.123 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChHHHHHHH
Q psy4013 6 ANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINF 48 (69)
Q Consensus 6 ~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaGa~l~~~ 48 (69)
.+.-......+..|+..-..+|+.++-.+... .-.|-.|+.+
T Consensus 17 ~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F-~m~Gk~LC~L 58 (89)
T cd08534 17 YDPMEWTEDQVLHWVVWAVKEFSLTDIDLSDW-NITGRELCSL 58 (89)
T ss_pred CChHHcCHHHHHHHHHHHHHHcCCCCCChhhc-CCCHHHHhcC
Confidence 33444455566677777777888765444443 2355555543
No 397
>PRK03011 butyrate kinase; Provisional
Probab=21.39 E-value=1.6e+02 Score=20.48 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=14.9
Q ss_pred HHHHHhhHHhCCCCCcEEEEe
Q psy4013 18 HWVQQNIALFGGDPGNVTMMG 38 (69)
Q Consensus 18 ~wi~~~~~~~~~d~~~i~l~G 38 (69)
+++-..+..+++||+.|++.|
T Consensus 283 k~I~~l~~~L~gdpD~IVlgG 303 (358)
T PRK03011 283 KEIGAMAAVLKGKVDAIVLTG 303 (358)
T ss_pred HHHHHHHHHhCCCCCEEEEeC
Confidence 344455566788999998874
No 398
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=21.25 E-value=1.3e+02 Score=18.49 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=17.4
Q ss_pred hHHhCCCCCcEEEEecChHHHHH
Q psy4013 24 IALFGGDPGNVTMMGHGTGAACI 46 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaGa~l~ 46 (69)
..+++.+|+++...|+|.....+
T Consensus 161 ~~~~~~~~~~~i~iGDs~~Di~a 183 (219)
T TIGR00338 161 LRKEGISPENTVAVGDGANDLSM 183 (219)
T ss_pred HHHcCCCHHHEEEEECCHHHHHH
Confidence 44568899999999999755433
No 399
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=21.12 E-value=1.2e+02 Score=15.05 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHh
Q psy4013 11 MDQIAALHWVQQN 23 (69)
Q Consensus 11 ~D~~~al~wi~~~ 23 (69)
..+..+++|++++
T Consensus 18 ~~q~~~m~wvr~~ 30 (51)
T PF06955_consen 18 AKQRRQMRWVRRN 30 (51)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5677899999976
No 400
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=20.89 E-value=1.4e+02 Score=18.20 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=17.0
Q ss_pred HhhHHhCCCCCcEEEEecChHH
Q psy4013 22 QNIALFGGDPGNVTMMGHGTGA 43 (69)
Q Consensus 22 ~~~~~~~~d~~~i~l~G~SaGa 43 (69)
.-+.+++.+|+++.++|+|...
T Consensus 157 ~~~~~~~~~~~~~i~igD~~~D 178 (226)
T PRK13222 157 LACEKLGLDPEEMLFVGDSRND 178 (226)
T ss_pred HHHHHcCCChhheEEECCCHHH
Confidence 3444678899999999999653
No 401
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.88 E-value=1.3e+02 Score=23.84 Aligned_cols=32 Identities=13% Similarity=0.267 Sum_probs=25.7
Q ss_pred CChhHHHHH--HHHHHHHHhh-HHhCCCCCcEEEE
Q psy4013 6 ANYGLMDQI--AALHWVQQNI-ALFGGDPGNVTMM 37 (69)
Q Consensus 6 ~n~~~~D~~--~al~wi~~~~-~~~~~d~~~i~l~ 37 (69)
||+.+.|=. .|+.|..+-. ..|+.+|+++++.
T Consensus 94 GNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vt 128 (879)
T COG0013 94 GNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVT 128 (879)
T ss_pred hcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEEEE
Confidence 677776654 6888888877 7789999999998
No 402
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1. Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels.
Probab=20.86 E-value=1e+02 Score=22.00 Aligned_cols=18 Identities=11% Similarity=0.340 Sum_probs=15.3
Q ss_pred EEEecChHHHHHHHHHhC
Q psy4013 35 TMMGHGTGAACINFLMIS 52 (69)
Q Consensus 35 ~l~G~SaGa~l~~~~~~~ 52 (69)
.+.|-|||+..++.++..
T Consensus 47 ~IaGtSAGALvAAl~asG 64 (382)
T cd07219 47 RVAGTSAGSVIAALVVCG 64 (382)
T ss_pred eEEEEcHHHHHHHHHHhC
Confidence 589999999998887765
No 403
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=20.84 E-value=2e+02 Score=17.22 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=17.2
Q ss_pred HHHHHhhHHh-CCCCCcEEEEecCh
Q psy4013 18 HWVQQNIALF-GGDPGNVTMMGHGT 41 (69)
Q Consensus 18 ~wi~~~~~~~-~~d~~~i~l~G~Sa 41 (69)
++.-+...+. +..+++|.+.|--+
T Consensus 136 ~~~~~~l~~~~~~~~~~i~~~GG~~ 160 (198)
T PF02782_consen 136 RQILEELEELTGIPIRRIRVSGGGA 160 (198)
T ss_dssp HHHHHHHHHHHTSCESEEEEESGGG
T ss_pred HHhhhhccccccccceeeEeccccc
Confidence 5555555555 88999999998554
No 404
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=20.83 E-value=88 Score=18.90 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=15.5
Q ss_pred hHHhCCCCCcEEEEecChH
Q psy4013 24 IALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaG 42 (69)
..+++.+++++.++|+|.-
T Consensus 101 l~~~~~~~~~~l~IGDs~~ 119 (170)
T TIGR01668 101 HPEMGLTSEQVAVVGDRLF 119 (170)
T ss_pred HHHcCCCHHHEEEECCcch
Confidence 4457889999999999973
No 405
>PLN02714 thiamin pyrophosphokinase
Probab=20.79 E-value=1.4e+02 Score=19.38 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=25.7
Q ss_pred cCChhHHHHHHHHHHHHHhhHHhCCCCCcEEEEecChH
Q psy4013 5 VANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 5 ~~n~~~~D~~~al~wi~~~~~~~~~d~~~i~l~G~SaG 42 (69)
+..+-.-|...|++|+.++.....-..+.|.+.|-..|
T Consensus 84 ~~eKD~TD~e~Al~~~~~~~~~~~~~~~~I~v~Ga~GG 121 (229)
T PLN02714 84 SHDQDTTDLHKCIAYIRDSTPDLDKSNLCILVLGALGG 121 (229)
T ss_pred CCCcccCHHHHHHHHHHHhccccccCCceEEEEcccCC
Confidence 45556678999999988654321112356999998766
No 406
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=20.16 E-value=88 Score=19.95 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=17.2
Q ss_pred HHHhhHHhCCCCCcEEEEecC
Q psy4013 20 VQQNIALFGGDPGNVTMMGHG 40 (69)
Q Consensus 20 i~~~~~~~~~d~~~i~l~G~S 40 (69)
+++-+.+.+.+++++.+.|++
T Consensus 99 fr~Al~~m~l~~~~vvmVGDq 119 (175)
T COG2179 99 FRRALKEMNLPPEEVVMVGDQ 119 (175)
T ss_pred HHHHHHHcCCChhHEEEEcch
Confidence 344566789999999999998
No 407
>COG4220 Phage DNA packaging protein, Nu1 subunit of terminase [DNA replication, recombination, and repair]
Probab=20.12 E-value=1.3e+02 Score=19.14 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=21.2
Q ss_pred CccccCChhHHHHHHHHHHHHHhhHH
Q psy4013 1 MKARVANYGLMDQIAALHWVQQNIAL 26 (69)
Q Consensus 1 ~~~~~~n~~~~D~~~al~wi~~~~~~ 26 (69)
++++-+|.-..|...++.|+.++...
T Consensus 35 ~~rgkg~e~~fd~a~~i~wyae~~a~ 60 (174)
T COG4220 35 NGRGKGDEDAFDLAAAISWYAERAAE 60 (174)
T ss_pred cCCCCCcchhhhHHHHHHHHHhhhcc
Confidence 45677888899999999999987654
No 408
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=20.08 E-value=1.7e+02 Score=19.30 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=18.9
Q ss_pred hhHHhCCCCCcEEEEecChHHHHHH
Q psy4013 23 NIALFGGDPGNVTMMGHGTGAACIN 47 (69)
Q Consensus 23 ~~~~~~~d~~~i~l~G~SaGa~l~~ 47 (69)
-+.+++.+|+++.++|+|.-+..++
T Consensus 211 a~~~~~~~p~~~l~IGDs~~Di~aA 235 (286)
T PLN02779 211 AAETLGVDPSRCVVVEDSVIGLQAA 235 (286)
T ss_pred HHHHhCcChHHEEEEeCCHHhHHHH
Confidence 3456788999999999997654444
No 409
>KOG2882|consensus
Probab=20.06 E-value=83 Score=21.80 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=16.0
Q ss_pred hHHhCCCCCcEEEEecChH
Q psy4013 24 IALFGGDPGNVTMMGHGTG 42 (69)
Q Consensus 24 ~~~~~~d~~~i~l~G~SaG 42 (69)
..+|+.||+|..++|++.=
T Consensus 234 ~~~~~i~psRt~mvGDRL~ 252 (306)
T KOG2882|consen 234 LEKFNIDPSRTCMVGDRLD 252 (306)
T ss_pred HHHcCCCcceEEEEcccch
Confidence 4568999999999999853
Done!