RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4013
         (69 letters)



>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family. 
          Length = 510

 Score = 95.5 bits (238), Expect = 4e-25
 Identities = 27/48 (56%), Positives = 35/48 (72%)

Query: 7   NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPT 54
           N GL+DQ+ AL WV+ NIA FGGDP NVT+ G   GAA ++ L++SP 
Sbjct: 157 NAGLLDQVLALRWVKDNIAAFGGDPDNVTLFGESAGAASVSLLLLSPA 204


>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
           lipases, cholinesterases, etc.)  These enzymes act on
           carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
           involves three residues (catalytic triad): a serine, a
           glutamate or aspartate and a histidine.These catalytic
           residues are responsible for the nucleophilic attack on
           the carbonyl carbon atom of the ester bond. In contrast
           with other alpha/beta hydrolase fold family members,
           p-nitrobenzyl esterase and acetylcholine esterase have a
           Glu instead of Asp at the active site carboxylate.
          Length = 493

 Score = 78.9 bits (195), Expect = 3e-19
 Identities = 27/47 (57%), Positives = 33/47 (70%)

Query: 7   NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53
           NYGL DQ  AL WVQ NIA FGGDP +VT+ G   G A ++ L++SP
Sbjct: 151 NYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSP 197


>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
          Length = 491

 Score = 78.2 bits (193), Expect = 5e-19
 Identities = 28/52 (53%), Positives = 33/52 (63%)

Query: 2   KARVANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53
            A  +N GL+DQI AL WV+ NI  FGGDP NVT+ G   GAA I  L+  P
Sbjct: 150 DAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVP 201


>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
          Length = 312

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 10  LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGA 43
           L D  AA  W++ N A  G DP  + + G   G 
Sbjct: 130 LEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGG 163


>gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This
          catalytic domain is found in a very wide range of
          enzymes.
          Length = 207

 Score = 34.5 bits (80), Expect = 0.001
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 9  GLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGA 43
           + D  AAL W+ ++    G DP  + + G   G 
Sbjct: 48 AIEDAYAALRWLAEHAWELGADPSRIAVAGDSAGG 82


>gnl|CDD|99875 cd06064, H2MP_F420-Reduc, Endopeptidases belonging to
          F420-reducing hydrogenases group. These hydrogenases
          from methanogens are encoded by the fru, frc, or frh
          genes. Sequence comparison indicates that fruD and frcD
          gene products from Methanococcus voltae are similar to
          HycI protease of Escherichia coli and are putatively
          involved in the C-terminal processing of large subunits
          (FruA and FrcA respectively). FrhD (F420 reducing
          hydrogenase delta subunit) enzyme belongs to the gene
          cluster of 8-hydroxy-5-deazaflavin (F420) reducing
          hydrogenase (FRH) from the thermophilic methanogen
          Methanobacterium thermoautotrophicum delta H. FrhD
          subunit is putatively involved in the processing of the
          coenzyme F420 hydrogenase-processing. It is similar to
          those frhD genes found in Methanomicrobia and
          Methanobacteria. It is different from the FrhD
          conserved domain found in methyl viologen-reducing
          hydrogenase and F420-non-reducing hydrogenase
          iron-sulfur subunit D.
          Length = 150

 Score = 27.6 bits (62), Expect = 0.38
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 31 PGNVTMMGHGTGAACINFLMISPTVMPDRII 61
          P NV ++  GTGA  + F ++     P +II
Sbjct: 30 PDNVQVIDAGTGAPHLLFTLLDEESKPKKII 60


>gnl|CDD|179651 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
          synthetase; Provisional.
          Length = 438

 Score = 27.2 bits (61), Expect = 0.53
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 4/32 (12%)

Query: 33 NVTMMGHG-TGAACINFLM---ISPTVMPDRI 60
           V ++G G TG +C++F +   ++P V+  RI
Sbjct: 8  KVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39


>gnl|CDD|206227 pfam14057, GGGtGRT, GGGtGRT protein.  This family of proteins is
           functionally uncharacterized. This family of proteins is
           found in bacteria and archaea. Proteins in this family
           are approximately 330 amino acids in length and contain
           many highly conserved residues including a GGGtGRT
           motif.
          Length = 328

 Score = 25.1 bits (55), Expect = 3.3
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 7/41 (17%)

Query: 1   MKARVANYGLMDQIAALHWVQQNIALFGGD---PGNVTMMG 38
           M A  A+YG+ D +  +H   Q    F G    P +V MMG
Sbjct: 269 MAAGPASYGMTDTMGRMHGDAQ----FAGSSSVPAHVEMMG 305


>gnl|CDD|218285 pfam04833, COBRA, COBRA-like protein.  Family of plant proteins are
           designated COBRA-like (COBL) proteins. The 12
           Arabidopsis members of the family are all GPI-liked.
           Some members of this family are annotated as
           phytochelatin synthase, but these annotations are
           incorrect.
          Length = 169

 Score = 24.6 bits (54), Expect = 3.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 31  PGNVTMMGHGTGAACINFLMISPTVMPD 58
           P N T+ G   G  C   + +SPT  PD
Sbjct: 121 PQNFTIKGPNPGYTCGPAVRVSPTRFPD 148


>gnl|CDD|221395 pfam12048, DUF3530, Protein of unknown function (DUF3530).  This
           family of proteins is functionally uncharacterized. This
           protein is found in bacteria. Proteins in this family
           are typically between 272 to 336 amino acids in length.
           These proteins are distantly related to alpa/beta
           hydrolases so they may act as enzymes.
          Length = 294

 Score = 24.7 bits (54), Expect = 4.6
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 33  NVTMMGHGTGAA-CINFLMISPTVMPDRII 61
           N+ ++GHGTGA   I +L   P+  PD ++
Sbjct: 178 NIVLLGHGTGAGWAIRYLAEKPSPAPDALV 207


>gnl|CDD|235482 PRK05465, PRK05465, ethanolamine ammonia-lyase small subunit;
           Provisional.
          Length = 260

 Score = 24.0 bits (53), Expect = 6.7
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 3/30 (10%)

Query: 3   ARVANYGLMDQIAALHWVQQNIALFGGDPG 32
            RVA   L D+I  L   +  + L G  PG
Sbjct: 156 GRVA---LGDEIGELLGAKVVVVLIGERPG 182


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,653,182
Number of extensions: 268749
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 15
Length of query: 69
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 30
Effective length of database: 9,207,796
Effective search space: 276233880
Effective search space used: 276233880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.4 bits)