RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4013
(69 letters)
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 102 bits (255), Expect = 1e-27
Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 7 NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPD---RIIDQ 63
NYGL+D I AL W +NI FGGDP +T+ G G G +C+N L +S R I Q
Sbjct: 186 NYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQ 245
Query: 64 S 64
S
Sbjct: 246 S 246
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 101 bits (252), Expect = 3e-27
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 7 NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53
N GL DQ A+ W++ N FGG+P +T+ G G++ +N ++SP
Sbjct: 205 NVGLWDQALAIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSP 251
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 99.8 bits (249), Expect = 8e-27
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 7 NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53
NYGL DQ A+ WV++NI FGGDP +T+ G G A ++ +SP
Sbjct: 161 NYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSP 207
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 99.8 bits (249), Expect = 9e-27
Identities = 25/47 (53%), Positives = 32/47 (68%)
Query: 7 NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53
N GL+DQ AL WVQ+NIA FGGDP +VT+ G GAA + ++S
Sbjct: 170 NVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSL 216
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 98.6 bits (246), Expect = 2e-26
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 7 NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53
N GL+DQ AL WV NI FGGDP VT+ G G A + ++SP
Sbjct: 167 NVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSP 213
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 98.6 bits (246), Expect = 2e-26
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 7 NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53
N GL DQ AL WVQ+NIA FGG+P +VT+ G GAA ++ ++SP
Sbjct: 165 NMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSP 211
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 98.6 bits (246), Expect = 2e-26
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 7 NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53
N+G +DQ+AAL WVQ NIA FGG+PG+VT+ G G ++ L++SP
Sbjct: 170 NWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSP 216
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 93.2 bits (232), Expect = 2e-24
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 7 NYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53
N GL D + L WVQ+N FGG P +VT+MG GAA + L +S
Sbjct: 171 NAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSLSK 217
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 92.3 bits (230), Expect = 3e-24
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 6 ANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53
N G++DQ+AAL WV++NIA FGGDP N+T+ G GAA + L+ P
Sbjct: 160 GNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLP 207
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 92.0 bits (229), Expect = 5e-24
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 6 ANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53
N GL+DQ AAL WV++NI+ FGGDP NVT+ G G I L+ P
Sbjct: 155 DNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMP 202
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 88.2 bits (219), Expect = 9e-23
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 5 VANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53
N GL+DQ AL WV+Q I FGGDP ++ + G GA + + + +
Sbjct: 159 DLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAY 207
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 86.3 bits (214), Expect = 4e-22
Identities = 21/49 (42%), Positives = 25/49 (51%)
Query: 5 VANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53
N GL DQ L WV NIA FGGDP V + G GA + +I+
Sbjct: 182 NTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAY 230
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 82.9 bits (205), Expect = 8e-21
Identities = 20/52 (38%), Positives = 25/52 (48%)
Query: 2 KARVANYGLMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISP 53
N GL DQ + WV NIA FGGDP VT+ G G+ + +I
Sbjct: 171 AEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWN 222
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold,
hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A
{Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Length = 303
Score = 36.1 bits (83), Expect = 2e-04
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 5 VANYGL---------MDQIA-ALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPT 54
V +Y L M Q L+W+ ++T GH GA + +++ P
Sbjct: 117 VMDYNLCPQVTLEQLMTQFTHFLNWIFDYTE--MTKVSSLTFAGHXAGAHLLAQILMRPN 174
Query: 55 VMPDRIIDQ 63
V+ +
Sbjct: 175 VITAQRSKM 183
>3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella
typhimurium}
Length = 326
Score = 31.9 bits (73), Expect = 0.006
Identities = 4/36 (11%), Positives = 11/36 (30%), Gaps = 3/36 (8%)
Query: 12 DQIAALHWVQQNIALFGGDPGNVTMMGH---GTGAA 44
+ +A + Q+ + + + G A
Sbjct: 140 ETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLAL 175
>1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE;
2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2
Length = 311
Score = 31.8 bits (73), Expect = 0.008
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 12 DQIAALHWVQQNIALFGGDPGNVTMMG 38
D A WV +N DP + + G
Sbjct: 132 DCYDATKWVAENAEELRIDPSKIFVGG 158
>2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A
{Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A
1qz3_A
Length = 310
Score = 31.8 bits (73), Expect = 0.009
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 12 DQIAALHWVQQNIALFGGDPGNVTMMGH---GTGAA 44
D AL W+ + A F DP + + G G AA
Sbjct: 127 DAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAA 162
>2wir_A Pesta, alpha/beta hydrolase fold-3 domain protein; tertiary
alcohol; 2.00A {Pyrobaculum calidifontis} PDB: 2yh2_A
3zwq_A
Length = 313
Score = 31.5 bits (72), Expect = 0.009
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 12 DQIAALHWVQQNIALFGGDPGNVTMMG 38
D A WV N G D G + + G
Sbjct: 129 DAYDAAKWVADNYDKLGVDNGKIAVAG 155
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 31.4 bits (71), Expect = 0.011
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGH---GTGAACINFLMISPTVMPDRIIDQSS 65
L A + W+ + D + + G G A N + P + +D
Sbjct: 87 LQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQ 145
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 31.4 bits (71), Expect = 0.012
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTG---AACINFLMISPTVMPDRIIDQSS 65
++D A++ ++Q+ A + DP +T G G A N + +
Sbjct: 102 VLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAML 160
>2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme,
hydrolase, HSL, alpha/beta hydrolase fold; 2.3A
{Uncultured archaeon}
Length = 311
Score = 31.1 bits (71), Expect = 0.013
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 12 DQIAALHWVQQNIALFGGDPGNVTMMG 38
D AAL WV G DP + + G
Sbjct: 126 DAYAALKWVADRADELGVDPDRIAVAG 152
>3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural
genomics CEN infectious disease, tuberculosis, O LIPW,
heroin esterase; 1.75A {Mycobacterium marinum}
Length = 317
Score = 29.9 bits (68), Expect = 0.031
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 12 DQIAALHWVQQNIALFGGDPGNVTMMG 38
D I L WV N G D + + G
Sbjct: 138 DAIEVLTWVVGNATRLGFDARRLAVAG 164
>1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP:
c.69.1.2 PDB: 1lzk_A
Length = 323
Score = 29.9 bits (68), Expect = 0.034
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 12 DQIAALHWVQQNIALFGGDPGNVTMMG 38
D AAL ++ + G DP + + G
Sbjct: 132 DCYAALLYIHAHAEELGIDPSRIAVGG 158
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 30.0 bits (67), Expect = 0.040
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGA 43
L D ++ + + + N+ M+GH GA
Sbjct: 97 LYDAVSNITRLVKE-----KGLTNINMVGHSVGA 125
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 29.8 bits (67), Expect = 0.042
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGA 43
L + A + QN + +P V ++G G
Sbjct: 97 LEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGG 130
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 0.15
Identities = 5/14 (35%), Positives = 9/14 (64%), Gaps = 1/14 (7%)
Query: 54 TVMPDRIIDQSS-W 66
V+ D+++D S W
Sbjct: 50 LVLSDKLVDTRSEW 63
>1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A,
alpha/beta hydrolase family; 1.85A {Bacillus subtilis}
SCOP: c.69.1.2
Length = 361
Score = 27.1 bits (60), Expect = 0.44
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 9 GLMDQIAALHWVQQNIALFGGDP 31
G+ D +AA+ WV ++ G
Sbjct: 164 GVEDCLAAVLWVDEHRESLGLSG 186
>3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic,
dimer, archaea, R267G, hydro; 1.65A {Sulfolobus
tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A
Length = 323
Score = 26.4 bits (59), Expect = 0.72
Identities = 8/20 (40%), Positives = 8/20 (40%)
Query: 12 DQIAALHWVQQNIALFGGDP 31
D AL WV N F G
Sbjct: 143 DSFDALKWVYNNSEKFNGKY 162
>3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase,
gibberellin signaling pathway, hydrolase, nucleus,
hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp}
PDB: 3ed1_A*
Length = 365
Score = 26.2 bits (58), Expect = 0.86
Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 12 DQIAALHWVQQN--IALFGGDPGNVTMMG 38
D AL WV + G V + G
Sbjct: 167 DGWTALKWVMSQPFMRSGGDAQARVFLSG 195
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 0.99
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 19/63 (30%)
Query: 9 GLMD-----QIAALHWVQQNIALF------GGDPGNVTMMGHGTG-----AACINFLMIS 52
GL+ Q A A F G P + T GH G A+ + + I
Sbjct: 1724 GLLSATQFTQPALTLM---EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE 1780
Query: 53 PTV 55
V
Sbjct: 1781 SLV 1783
>2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia
eriantha} PDB: 2o7v_A
Length = 338
Score = 25.4 bits (56), Expect = 1.3
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 12 DQIAALHWVQQN---IALFGGDPGNVTMMG 38
D + AL W++ + D N +MG
Sbjct: 138 DAMEALQWIKDSRDEWLTNFADFSNCFIMG 167
>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase
fold, structural genomics, structural G of pathogenic
protozoa consortium; 2.20A {Trypanosoma brucei}
Length = 335
Score = 25.0 bits (54), Expect = 2.1
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 32 GNVTMMGHGTGAACINFLMISPTVMP--DRIIDQSSW 66
V + TG + L+ + R+I
Sbjct: 108 NEVALFATSTGTQLVFELLENSAHKSSITRVILHGVV 144
>2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor,
gibberellin, gibberellin signaling pathway, hydrolase,
nucleus, receptor, developmental protein; HET: GA3;
1.80A {Arabidopsis thaliana} PDB: 2zsi_A*
Length = 351
Score = 24.3 bits (53), Expect = 3.4
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 12 DQIAALHWVQQNIALFGGDPGN 33
D AL+WV L
Sbjct: 168 DGWIALNWVNSRSWLKSKKDSK 189
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 24.5 bits (53), Expect = 3.5
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
Query: 27 FGGDPGNV-------TMMGHGTGAACINFLMISPTVMPDRII 61
G GN + GH GAA + + ++ II
Sbjct: 1365 LGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGII 1406
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 24.3 bits (53), Expect = 4.5
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 4 RVANYGLMDQIAALHWVQQN-------IALFG 28
+ + DQ+ + W++Q I + G
Sbjct: 577 KQGTVEVADQLRGVAWLKQQPWVDPARIGVQG 608
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 23.5 bits (51), Expect = 6.6
Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 4 RVANYGLMDQIAALHWVQQN-------IALFG 28
R+ + DQ+ + +++ I + G
Sbjct: 544 RLGQTEMADQMCGVDFLKSQSWVDADRIGVHG 575
>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural
genomics, joint CE structural genomics, JCSG, protein
structure initiative; 1.75A {Mesorhizobium loti} SCOP:
c.69.1.14
Length = 223
Score = 22.9 bits (49), Expect = 9.7
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 10 LMDQIAALHWVQQNIALFGGDPGNVTMMGHGTGAACINFLMISPTVMPD 58
L+ +A + + G + + HG+G + ++ + P
Sbjct: 12 LLTDLAFPYRLLGA----GKESRECLFLLHGSGVDETTLVPLARRIAPT 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.137 0.437
Gapped
Lambda K H
0.267 0.0586 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,127,673
Number of extensions: 51837
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 37
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.7 bits)