Query psy4014
Match_columns 85
No_of_seqs 129 out of 1386
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 23:12:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00135 COesterase: Carboxyle 99.8 1.5E-20 3.1E-25 138.9 -0.0 69 3-71 109-180 (535)
2 COG2272 PnbA Carboxylesterase 99.8 2.3E-19 5E-24 134.6 5.8 69 3-72 80-150 (491)
3 cd00312 Esterase_lipase Estera 99.6 3.6E-16 7.8E-21 116.1 6.7 66 3-68 79-146 (493)
4 KOG1516|consensus 99.6 2.9E-16 6.2E-21 118.1 3.9 68 3-70 97-167 (545)
5 KOG4389|consensus 99.6 1.8E-15 4E-20 114.1 3.5 67 3-70 121-189 (601)
6 KOG1515|consensus 99.5 6E-15 1.3E-19 107.2 5.0 62 3-64 74-140 (336)
7 COG0657 Aes Esterase/lipase [L 99.2 1.4E-11 2.9E-16 87.2 5.5 62 5-66 66-129 (312)
8 PRK10162 acetyl esterase; Prov 99.1 5.4E-11 1.2E-15 85.0 4.8 55 4-61 70-126 (318)
9 PF07859 Abhydrolase_3: alpha/ 98.9 2.9E-10 6.2E-15 75.6 1.8 41 21-61 1-43 (211)
10 KOG4627|consensus 98.3 1.2E-06 2.6E-11 61.1 4.3 54 4-61 57-111 (270)
11 KOG4388|consensus 97.7 5.6E-05 1.2E-09 59.3 4.1 45 17-61 395-441 (880)
12 TIGR01840 esterase_phb esteras 97.6 8.5E-05 1.9E-09 49.9 3.5 51 6-57 2-53 (212)
13 PF10340 DUF2424: Protein of u 97.5 0.00012 2.6E-09 54.4 3.8 49 17-65 121-175 (374)
14 COG1506 DAP2 Dipeptidyl aminop 97.4 0.00039 8.5E-09 54.1 5.4 53 6-59 381-435 (620)
15 TIGR02821 fghA_ester_D S-formy 96.8 0.002 4.3E-08 45.0 4.0 50 4-56 28-81 (275)
16 PLN00021 chlorophyllase 96.7 0.0039 8.4E-08 45.0 4.9 49 2-56 38-88 (313)
17 PF10503 Esterase_phd: Esteras 96.6 0.0021 4.5E-08 44.6 2.8 50 6-55 4-54 (220)
18 PLN02442 S-formylglutathione h 96.4 0.0042 9.1E-08 43.8 3.7 52 5-56 34-86 (283)
19 PF03403 PAF-AH_p_II: Platelet 96.4 0.0048 1E-07 45.7 3.8 40 16-59 98-139 (379)
20 PRK10115 protease 2; Provision 96.3 0.012 2.6E-07 46.6 5.8 42 15-57 442-484 (686)
21 PRK10566 esterase; Provisional 96.3 0.0098 2.1E-07 40.1 4.7 46 8-57 17-64 (249)
22 KOG3847|consensus 95.7 0.016 3.4E-07 43.0 4.0 41 15-59 115-157 (399)
23 PF12146 Hydrolase_4: Putative 94.2 0.029 6.3E-07 32.8 1.4 48 2-56 3-52 (79)
24 TIGR00976 /NonD putative hydro 93.8 0.13 2.8E-06 39.5 4.8 51 3-56 9-62 (550)
25 PF12695 Abhydrolase_5: Alpha/ 93.5 0.079 1.7E-06 32.4 2.7 36 20-59 1-38 (145)
26 PLN02298 hydrolase, alpha/beta 93.5 0.13 2.8E-06 36.4 4.0 48 4-56 46-96 (330)
27 COG3509 LpqC Poly(3-hydroxybut 93.5 0.12 2.5E-06 37.8 3.7 44 6-53 50-97 (312)
28 PLN02385 hydrolase; alpha/beta 93.4 0.08 1.7E-06 37.9 2.8 45 6-56 77-124 (349)
29 COG4099 Predicted peptidase [G 93.1 0.1 2.2E-06 38.6 3.0 52 5-56 176-235 (387)
30 PF03991 Prion_octapep: Copper 93.0 0.039 8.4E-07 19.2 0.4 6 25-30 2-7 (8)
31 PF05448 AXE1: Acetyl xylan es 92.8 0.056 1.2E-06 39.2 1.4 51 2-56 68-118 (320)
32 PHA02857 monoglyceride lipase; 92.7 0.14 3E-06 35.0 3.1 47 3-56 13-61 (276)
33 PRK10673 acyl-CoA esterase; Pr 91.0 0.4 8.7E-06 32.0 3.8 38 14-56 12-51 (255)
34 TIGR03611 RutD pyrimidine util 90.7 0.38 8.2E-06 31.5 3.5 37 16-56 11-48 (257)
35 PF12740 Chlorophyllase2: Chlo 90.6 0.25 5.5E-06 35.2 2.7 47 2-54 3-51 (259)
36 PRK10985 putative hydrolase; P 90.6 0.27 5.9E-06 35.0 2.9 38 16-57 56-97 (324)
37 PLN02652 hydrolase; alpha/beta 90.4 0.18 4E-06 37.4 1.9 46 5-56 125-172 (395)
38 PF02129 Peptidase_S15: X-Pro 89.9 0.21 4.5E-06 34.7 1.8 59 3-66 5-72 (272)
39 TIGR01250 pro_imino_pep_2 prol 88.6 0.91 2E-05 30.0 4.1 37 18-56 25-62 (288)
40 PRK10439 enterobactin/ferric e 88.5 0.61 1.3E-05 35.0 3.5 51 5-55 196-249 (411)
41 TIGR03101 hydr2_PEP hydrolase, 88.3 1.1 2.3E-05 31.8 4.4 41 16-57 23-66 (266)
42 KOG2100|consensus 88.2 1.1 2.4E-05 36.2 4.9 54 7-60 514-571 (755)
43 TIGR02427 protocat_pcaD 3-oxoa 88.1 0.97 2.1E-05 29.1 3.9 35 17-56 12-48 (251)
44 TIGR01738 bioH putative pimelo 87.5 0.96 2.1E-05 29.1 3.6 34 18-56 4-39 (245)
45 TIGR03100 hydr1_PEP hydrolase, 87.5 1.1 2.3E-05 31.2 4.0 37 19-56 27-66 (274)
46 cd00707 Pancreat_lipase_like P 87.3 1.1 2.3E-05 31.7 3.9 41 16-58 34-77 (275)
47 PF00756 Esterase: Putative es 86.5 0.38 8.2E-06 32.5 1.3 26 5-30 10-37 (251)
48 KOG2281|consensus 86.3 1.3 2.7E-05 36.0 4.2 55 4-59 627-688 (867)
49 PLN02211 methyl indole-3-aceta 86.1 1.3 2.9E-05 30.8 3.9 38 15-56 15-54 (273)
50 PF12697 Abhydrolase_6: Alpha/ 84.6 1 2.3E-05 28.3 2.6 31 21-56 1-33 (228)
51 TIGR03695 menH_SHCHC 2-succiny 84.5 1.2 2.7E-05 28.4 2.9 33 19-56 2-36 (251)
52 PRK05077 frsA fermentation/res 83.9 1.5 3.1E-05 32.8 3.4 43 8-56 186-231 (414)
53 TIGR03056 bchO_mg_che_rel puta 83.5 1.5 3.3E-05 29.2 3.2 35 17-56 27-63 (278)
54 PRK11126 2-succinyl-6-hydroxy- 82.9 1.1 2.4E-05 29.7 2.2 33 18-56 2-36 (242)
55 PLN02511 hydrolase 82.6 1.3 2.9E-05 32.5 2.8 39 16-56 98-138 (388)
56 PF07224 Chlorophyllase: Chlor 82.2 1.5 3.2E-05 32.0 2.7 47 4-56 34-82 (307)
57 PRK10349 carboxylesterase BioH 80.9 2.1 4.5E-05 28.8 3.1 34 18-56 13-48 (256)
58 KOG1455|consensus 80.7 1.7 3.7E-05 31.9 2.7 48 5-56 42-91 (313)
59 COG0400 Predicted esterase [Ge 80.5 4 8.6E-05 28.0 4.3 50 5-57 5-54 (207)
60 COG4188 Predicted dienelactone 80.4 4.4 9.6E-05 30.4 4.8 56 2-61 51-112 (365)
61 PLN02894 hydrolase, alpha/beta 79.8 2.1 4.6E-05 31.7 3.0 35 17-56 104-140 (402)
62 KOG3101|consensus 79.6 2.9 6.2E-05 29.8 3.4 48 6-55 31-82 (283)
63 PRK00870 haloalkane dehalogena 77.6 3.1 6.7E-05 28.9 3.2 35 18-56 46-82 (302)
64 PF12715 Abhydrolase_7: Abhydr 76.2 5.9 0.00013 30.0 4.4 48 7-56 105-169 (390)
65 PRK10749 lysophospholipase L2; 75.8 3.5 7.6E-05 29.3 3.1 36 17-56 53-90 (330)
66 KOG2564|consensus 75.4 6.4 0.00014 29.1 4.3 49 6-56 63-111 (343)
67 TIGR03343 biphenyl_bphD 2-hydr 75.1 2.5 5.3E-05 28.6 2.1 38 18-56 30-69 (282)
68 TIGR03502 lipase_Pla1_cef extr 74.5 4.9 0.00011 33.0 3.9 37 16-56 447-485 (792)
69 TIGR01249 pro_imino_pep_1 prol 74.1 5.3 0.00012 27.9 3.6 36 18-56 27-62 (306)
70 PRK03204 haloalkane dehalogena 73.4 3.1 6.8E-05 28.9 2.3 34 18-56 34-69 (286)
71 PRK06489 hypothetical protein; 73.1 5.1 0.00011 28.8 3.4 36 18-56 69-114 (360)
72 KOG4391|consensus 72.4 5.8 0.00013 28.4 3.4 41 15-56 75-115 (300)
73 PLN02679 hydrolase, alpha/beta 71.4 4.7 0.0001 29.2 2.9 34 18-56 88-123 (360)
74 PF01738 DLH: Dienelactone hyd 71.1 2.5 5.5E-05 28.0 1.4 47 7-59 5-53 (218)
75 PLN02965 Probable pheophorbida 70.2 7.2 0.00016 26.3 3.5 33 20-56 5-39 (255)
76 COG3458 Acetyl esterase (deace 69.6 7.5 0.00016 28.6 3.5 50 3-56 69-118 (321)
77 TIGR02240 PHA_depoly_arom poly 69.2 5.2 0.00011 27.3 2.6 34 18-56 25-60 (276)
78 PRK14875 acetoin dehydrogenase 68.9 7.8 0.00017 27.3 3.6 35 17-56 130-166 (371)
79 PRK05855 short chain dehydroge 68.8 5.6 0.00012 29.8 2.9 35 17-56 24-60 (582)
80 TIGR01836 PHA_synth_III_C poly 68.5 13 0.00028 26.7 4.6 17 40-57 88-104 (350)
81 PF10142 PhoPQ_related: PhoPQ- 67.8 16 0.00035 27.3 5.1 50 4-54 51-105 (367)
82 PLN02824 hydrolase, alpha/beta 67.6 6.1 0.00013 27.2 2.7 34 18-56 29-64 (294)
83 PF02230 Abhydrolase_2: Phosph 65.1 6 0.00013 26.4 2.2 21 5-28 4-24 (216)
84 PLN02872 triacylglycerol lipas 64.8 7.2 0.00016 29.2 2.8 41 17-58 73-118 (395)
85 PLN03084 alpha/beta hydrolase 61.7 9.5 0.0002 28.3 2.9 35 17-56 126-162 (383)
86 PF07082 DUF1350: Protein of u 61.5 9.3 0.0002 27.3 2.7 38 20-58 18-58 (250)
87 COG2267 PldB Lysophospholipase 61.4 5.9 0.00013 28.3 1.7 46 4-56 23-70 (298)
88 PRK07581 hypothetical protein; 58.3 15 0.00033 25.9 3.4 39 17-56 40-80 (339)
89 PRK13604 luxD acyl transferase 57.9 17 0.00036 26.6 3.6 39 15-57 34-74 (307)
90 PRK11460 putative hydrolase; P 55.3 12 0.00026 25.5 2.4 37 15-54 13-52 (232)
91 PRK03592 haloalkane dehalogena 55.2 12 0.00027 25.6 2.5 34 18-56 27-62 (295)
92 COG2382 Fes Enterochelin ester 54.7 15 0.00033 26.9 2.9 50 7-56 86-139 (299)
93 COG2936 Predicted acyl esteras 53.8 18 0.0004 28.6 3.4 51 3-56 32-89 (563)
94 KOG3967|consensus 53.2 24 0.00053 25.3 3.6 18 16-33 99-116 (297)
95 PF00151 Lipase: Lipase; Inte 53.1 20 0.00043 26.2 3.3 42 16-59 69-116 (331)
96 PLN02578 hydrolase 52.6 15 0.00033 26.3 2.7 33 19-56 87-121 (354)
97 PLN03087 BODYGUARD 1 domain co 49.1 21 0.00046 27.6 3.1 36 18-56 201-241 (481)
98 PF14041 Lipoprotein_21: LppP/ 48.5 9.8 0.00021 22.5 1.0 37 19-56 26-63 (89)
99 PF11144 DUF2920: Protein of u 48.2 17 0.00037 27.7 2.4 37 18-57 35-75 (403)
100 COG0412 Dienelactone hydrolase 46.4 41 0.00088 23.2 4.0 43 7-55 18-62 (236)
101 PF00450 Peptidase_S10: Serine 46.1 16 0.00035 26.4 2.0 15 14-28 36-50 (415)
102 PF00326 Peptidase_S9: Prolyl 45.5 24 0.00052 23.1 2.6 19 40-59 8-26 (213)
103 PTZ00472 serine carboxypeptida 43.5 23 0.00049 27.1 2.5 15 14-28 73-87 (462)
104 KOG1552|consensus 43.0 19 0.00041 25.8 1.9 43 17-66 59-103 (258)
105 TIGR01607 PST-A Plasmodium sub 41.0 57 0.0012 23.4 4.1 16 40-56 68-83 (332)
106 PRK11071 esterase YqiA; Provis 40.1 30 0.00065 22.8 2.4 35 19-56 2-41 (190)
107 PLN02980 2-oxoglutarate decarb 39.9 30 0.00065 30.6 2.9 35 17-56 1370-1406(1655)
108 COG2819 Predicted hydrolase of 37.4 44 0.00095 24.0 3.0 52 6-58 26-78 (264)
109 KOG2182|consensus 36.8 1.3E+02 0.0028 23.9 5.6 43 15-57 83-128 (514)
110 TIGR02806 clostrip clostripain 35.9 28 0.0006 27.1 1.9 17 16-32 113-129 (476)
111 KOG2237|consensus 35.6 54 0.0012 26.8 3.5 44 15-58 467-510 (712)
112 PF04083 Abhydro_lipase: Parti 35.2 40 0.00087 18.7 2.1 15 14-28 39-53 (63)
113 COG2945 Predicted hydrolase of 34.9 76 0.0016 22.2 3.7 43 15-57 25-70 (210)
114 PF13341 RAG2_PHD: RAG2 PHD do 34.6 36 0.00078 19.9 1.8 26 3-28 12-37 (78)
115 COG0627 Predicted esterase [Ge 34.4 75 0.0016 23.2 3.9 39 15-55 51-92 (316)
116 PF03852 Vsr: DNA mismatch end 34.0 51 0.0011 19.3 2.4 14 18-31 56-69 (75)
117 COG1647 Esterase/lipase [Gener 33.6 37 0.00081 24.2 2.1 34 19-56 16-51 (243)
118 PF05990 DUF900: Alpha/beta hy 33.6 32 0.0007 23.7 1.8 15 15-29 15-29 (233)
119 PF10686 DUF2493: Protein of u 33.2 25 0.00054 20.0 1.0 32 17-51 30-61 (71)
120 PF06342 DUF1057: Alpha/beta h 32.1 1.5E+02 0.0033 21.8 5.1 47 7-56 24-71 (297)
121 COG3727 Vsr DNA G:T-mismatch r 32.0 55 0.0012 21.5 2.6 15 18-32 57-71 (150)
122 TIGR00632 vsr DNA mismatch end 31.8 56 0.0012 20.6 2.5 14 17-30 55-68 (117)
123 COG0596 MhpC Predicted hydrola 31.7 49 0.0011 20.5 2.3 38 18-56 21-59 (282)
124 TIGR03230 lipo_lipase lipoprot 31.0 71 0.0015 24.6 3.4 39 17-56 40-82 (442)
125 KOG1838|consensus 30.7 59 0.0013 24.9 2.9 39 16-56 123-163 (409)
126 COG0429 Predicted hydrolase of 28.2 57 0.0012 24.4 2.4 39 15-56 72-113 (345)
127 PF00975 Thioesterase: Thioest 27.8 70 0.0015 20.8 2.7 34 20-57 2-37 (229)
128 PF03415 Peptidase_C11: Clostr 27.0 21 0.00046 26.7 0.0 15 16-30 97-111 (397)
129 cd02421 Peptidase_C39_likeD A 26.4 51 0.0011 19.6 1.7 17 15-31 67-83 (124)
130 PRK12472 hypothetical protein; 25.4 2.1E+02 0.0046 22.6 5.1 43 22-66 123-175 (508)
131 COG5140 UFD1 Ubiquitin fusion- 25.1 69 0.0015 23.3 2.3 24 62-85 134-157 (331)
132 PF03283 PAE: Pectinacetyleste 24.4 96 0.0021 23.0 3.1 18 16-33 48-65 (361)
133 cd03015 PRX_Typ2cys Peroxiredo 23.2 1E+02 0.0022 19.7 2.7 37 17-54 29-70 (173)
134 KOG1282|consensus 23.1 80 0.0017 24.4 2.5 19 14-32 69-87 (454)
135 TIGR01392 homoserO_Ac_trn homo 23.1 83 0.0018 22.4 2.5 39 18-57 31-82 (351)
136 KOG0270|consensus 22.8 65 0.0014 25.0 1.9 37 46-82 202-238 (463)
137 KOG2948|consensus 22.8 49 0.0011 24.5 1.2 28 16-43 290-317 (327)
138 PLN02209 serine carboxypeptida 21.7 94 0.002 23.7 2.6 15 14-28 64-78 (437)
139 PF13899 Thioredoxin_7: Thiore 21.4 68 0.0015 17.9 1.4 38 16-55 16-60 (82)
140 KOG2853|consensus 21.2 88 0.0019 24.1 2.3 31 21-53 89-119 (509)
141 PF12923 RRP7: Ribosomal RNA-p 21.1 1E+02 0.0022 19.5 2.4 15 43-57 47-61 (131)
142 PF12048 DUF3530: Protein of u 21.1 1.5E+02 0.0032 21.4 3.4 53 4-57 74-127 (310)
143 cd02417 Peptidase_C39_likeA A 20.7 73 0.0016 18.7 1.6 17 15-31 67-83 (121)
144 PRK03348 DNA polymerase IV; Pr 20.6 1E+02 0.0022 23.5 2.6 26 25-61 401-426 (454)
145 COG1770 PtrB Protease II [Amin 20.5 2.3E+02 0.0051 23.2 4.6 61 15-78 445-506 (682)
146 PLN03016 sinapoylglucose-malat 20.3 1E+02 0.0022 23.5 2.5 15 14-28 62-76 (433)
147 PF05577 Peptidase_S28: Serine 20.2 29 0.00063 25.7 -0.4 41 17-57 28-69 (434)
No 1
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=99.78 E-value=1.5e-20 Score=138.95 Aligned_cols=69 Identities=36% Similarity=0.652 Sum_probs=50.9
Q ss_pred CCCceeeCCCCCCC-CccEEEEEeCCCccCCCC--CCCChHHHhhCCCeEEEEeCCCCCCcccCCCCchhhh
Q psy4014 3 QYPRDFGKVGQPLQ-KYPVLIYIHGESFEWNSG--NPYDGRILASYADFVVITLNYRLGVLVDITLKRKKTK 71 (85)
Q Consensus 3 ~~~~i~~p~~~~~~-~~PVvv~iHGGg~~~g~~--~~~~~~~la~~~~~ivVsv~YRlap~Gfl~~~~~~~~ 71 (85)
.|+|||+|...... ++|||||||||||..|+. ..+....++.+.++|||++||||++||||++++....
T Consensus 109 L~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~ 180 (535)
T PF00135_consen 109 LYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAP 180 (535)
T ss_dssp -EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSH
T ss_pred HHHhhhhccccccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccC
Confidence 47999999964444 799999999999999998 3455666666679999999999999999999877654
No 2
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.78 E-value=2.3e-19 Score=134.56 Aligned_cols=69 Identities=39% Similarity=0.669 Sum_probs=61.7
Q ss_pred CCCceeeCCCCCCCCccEEEEEeCCCccCCCCCC--CChHHHhhCCCeEEEEeCCCCCCcccCCCCchhhhh
Q psy4014 3 QYPRDFGKVGQPLQKYPVLIYIHGESFEWNSGNP--YDGRILASYADFVVITLNYRLGVLVDITLKRKKTKK 72 (85)
Q Consensus 3 ~~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~--~~~~~la~~~~~ivVsv~YRlap~Gfl~~~~~~~~~ 72 (85)
.|+|||+|+ .+..++|||||||||+|..|+... ++++.|+.+.++||||+||||++||||.........
T Consensus 80 L~LNIwaP~-~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~ 150 (491)
T COG2272 80 LYLNIWAPE-VPAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTED 150 (491)
T ss_pred eeEEeeccC-CCCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhccccc
Confidence 489999999 566789999999999999999874 899999999789999999999999999998776443
No 3
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.64 E-value=3.6e-16 Score=116.13 Aligned_cols=66 Identities=35% Similarity=0.599 Sum_probs=56.5
Q ss_pred CCCceeeCCCC-CCCCccEEEEEeCCCccCCCCCCCChHHHhhCCC-eEEEEeCCCCCCcccCCCCch
Q psy4014 3 QYPRDFGKVGQ-PLQKYPVLIYIHGESFEWNSGNPYDGRILASYAD-FVVITLNYRLGVLVDITLKRK 68 (85)
Q Consensus 3 ~~~~i~~p~~~-~~~~~PVvv~iHGGg~~~g~~~~~~~~~la~~~~-~ivVsv~YRlap~Gfl~~~~~ 68 (85)
.|+|||+|... ...++|||||||||||..|+...+....++...+ ++||++||||+++||+++.+.
T Consensus 79 l~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~ 146 (493)
T cd00312 79 LYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLYPGDGLAREGDNVIVVSINYRLGVLGFLSTGDI 146 (493)
T ss_pred CeEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCCChHHHHhcCCCEEEEEecccccccccccCCCC
Confidence 57899999753 3567999999999999999998777777877665 999999999999999988754
No 4
>KOG1516|consensus
Probab=99.62 E-value=2.9e-16 Score=118.10 Aligned_cols=68 Identities=31% Similarity=0.497 Sum_probs=56.2
Q ss_pred CCCceeeCCCCCCCCccEEEEEeCCCccCCCCC---CCChHHHhhCCCeEEEEeCCCCCCcccCCCCchhh
Q psy4014 3 QYPRDFGKVGQPLQKYPVLIYIHGESFEWNSGN---PYDGRILASYADFVVITLNYRLGVLVDITLKRKKT 70 (85)
Q Consensus 3 ~~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~---~~~~~~la~~~~~ivVsv~YRlap~Gfl~~~~~~~ 70 (85)
.|+|||+|.....+++|||||||||+|..|+.. .+....++...++|||+++|||++|||++.++...
T Consensus 97 LylNV~tp~~~~~~~~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~ 167 (545)
T KOG1516|consen 97 LYLNVYTPQGCSESKLPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAA 167 (545)
T ss_pred ceEEEeccCCCccCCCCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCC
Confidence 489999998643312999999999999999974 34557777777999999999999999999995554
No 5
>KOG4389|consensus
Probab=99.56 E-value=1.8e-15 Score=114.09 Aligned_cols=67 Identities=27% Similarity=0.525 Sum_probs=57.6
Q ss_pred CCCceeeCCCCCCCCccEEEEEeCCCccCCCCC--CCChHHHhhCCCeEEEEeCCCCCCcccCCCCchhh
Q psy4014 3 QYPRDFGKVGQPLQKYPVLIYIHGESFEWNSGN--PYDGRILASYADFVVITLNYRLGVLVDITLKRKKT 70 (85)
Q Consensus 3 ~~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~--~~~~~~la~~~~~ivVsv~YRlap~Gfl~~~~~~~ 70 (85)
.|+|||.|...+. +.-|||||.||||..|+++ .|+++.++..+++|||++|||++|||||..+...+
T Consensus 121 LYlNVW~P~~~p~-n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG~FGFL~l~~~~e 189 (601)
T KOG4389|consen 121 LYLNVWAPAADPY-NLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVGAFGFLYLPGHPE 189 (601)
T ss_pred eEEEEeccCCCCC-CceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeeccceEEecCCCCC
Confidence 4899999974443 3449999999999999997 48899999999999999999999999999965444
No 6
>KOG1515|consensus
Probab=99.54 E-value=6e-15 Score=107.22 Aligned_cols=62 Identities=32% Similarity=0.477 Sum_probs=52.0
Q ss_pred CCCceeeCCCCCC-CCccEEEEEeCCCccCCCCC--CCC--hHHHhhCCCeEEEEeCCCCCCcccCC
Q psy4014 3 QYPRDFGKVGQPL-QKYPVLIYIHGESFEWNSGN--PYD--GRILASYADFVVITLNYRLGVLVDIT 64 (85)
Q Consensus 3 ~~~~i~~p~~~~~-~~~PVvv~iHGGg~~~g~~~--~~~--~~~la~~~~~ivVsv~YRlap~Gfl~ 64 (85)
+..+||.|..... ..+|+|||||||||+.|+.. .|+ +.+++.+.++++|+|||||||--=+.
T Consensus 74 l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~~P 140 (336)
T KOG1515|consen 74 LPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEHPFP 140 (336)
T ss_pred eEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCCCCC
Confidence 4678999997666 78999999999999999865 344 48888899999999999999975443
No 7
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.24 E-value=1.4e-11 Score=87.18 Aligned_cols=62 Identities=26% Similarity=0.336 Sum_probs=50.5
Q ss_pred CceeeCCCCCCCCccEEEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCCCCCCcccCCCC
Q psy4014 5 PRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYD--GRILASYADFVVITLNYRLGVLVDITLK 66 (85)
Q Consensus 5 ~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~YRlap~Gfl~~~ 66 (85)
.++|.|........|++||+|||||+.|+...++ .+.++...|++|+++||||+|-.-+...
T Consensus 66 ~~~y~p~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~~~p~~ 129 (312)
T COG0657 66 VRVYRPDRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEHPFPAA 129 (312)
T ss_pred EEEECCCCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCCCCCch
Confidence 5788883344556899999999999999998774 4788888899999999999998744333
No 8
>PRK10162 acetyl esterase; Provisional
Probab=99.14 E-value=5.4e-11 Score=85.04 Aligned_cols=55 Identities=29% Similarity=0.412 Sum_probs=45.5
Q ss_pred CCceeeCCCCCCCCccEEEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCCCCCCcc
Q psy4014 4 YPRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYD--GRILASYADFVVITLNYRLGVLV 61 (85)
Q Consensus 4 ~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~YRlap~G 61 (85)
-.++|+|.. ...|++||+|||||..|+...+. .+.++...++.|++++||++|-.
T Consensus 70 ~~~~y~P~~---~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~ 126 (318)
T PRK10162 70 ETRLYYPQP---DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA 126 (318)
T ss_pred EEEEECCCC---CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC
Confidence 457888852 34699999999999999987664 47788778999999999999965
No 9
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=98.95 E-value=2.9e-10 Score=75.60 Aligned_cols=41 Identities=32% Similarity=0.511 Sum_probs=30.3
Q ss_pred EEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCCCCCCcc
Q psy4014 21 LIYIHGESFEWNSGNPYD--GRILASYADFVVITLNYRLGVLV 61 (85)
Q Consensus 21 vv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~YRlap~G 61 (85)
|||||||||+.|+...+. ...++.+.|++|++++|||+|-.
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~~ 43 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPEA 43 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTTS
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeeccccccc
Confidence 799999999999998654 37777767999999999999964
No 10
>KOG4627|consensus
Probab=98.27 E-value=1.2e-06 Score=61.09 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=43.2
Q ss_pred CCceeeCCCCCCCCccEEEEEeCCCccCCCCCC-CChHHHhhCCCeEEEEeCCCCCCcc
Q psy4014 4 YPRDFGKVGQPLQKYPVLIYIHGESFEWNSGNP-YDGRILASYADFVVITLNYRLGVLV 61 (85)
Q Consensus 4 ~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~-~~~~~la~~~~~ivVsv~YRlap~G 61 (85)
..+||.|. ...|++||||||.|..|+... -.....+.+.|+.|++++|-|+|-+
T Consensus 57 ~VDIwg~~----~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q~ 111 (270)
T KOG4627|consen 57 LVDIWGST----NQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQV 111 (270)
T ss_pred EEEEecCC----CCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCccc
Confidence 45778773 456899999999999999864 3345556667999999999999977
No 11
>KOG4388|consensus
Probab=97.66 E-value=5.6e-05 Score=59.31 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=38.9
Q ss_pred CccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCCCCCcc
Q psy4014 17 KYPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYRLGVLV 61 (85)
Q Consensus 17 ~~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YRlap~G 61 (85)
..-.+++.|||||+..+...+.. +..+...|+.+++|+|.|+|-.
T Consensus 395 S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPEa 441 (880)
T KOG4388|consen 395 SRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPEA 441 (880)
T ss_pred CceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCCC
Confidence 34588999999999999888775 7788788999999999999864
No 12
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=97.56 E-value=8.5e-05 Score=49.91 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=36.0
Q ss_pred ceeeCCCCCCCCccEEEEEeCCCccCCCCC-CCChHHHhhCCCeEEEEeCCCC
Q psy4014 6 RDFGKVGQPLQKYPVLIYIHGESFEWNSGN-PYDGRILASYADFVVITLNYRL 57 (85)
Q Consensus 6 ~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~-~~~~~~la~~~~~ivVsv~YRl 57 (85)
-+|.|... ..+.|+||++||++....+.. ...-..++.+.+++|+.++||-
T Consensus 2 ~ly~P~~~-~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g 53 (212)
T TIGR01840 2 YVYVPAGL-TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTS 53 (212)
T ss_pred EEEcCCCC-CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcC
Confidence 36888753 467899999999986543322 1223556666799999999985
No 13
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=97.51 E-value=0.00012 Score=54.41 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=33.4
Q ss_pred CccEEEEEeCCCccCCCCCCCCh---HHHhhCCCeEEEEeCCCCCC---cccCCC
Q psy4014 17 KYPVLIYIHGESFEWNSGNPYDG---RILASYADFVVITLNYRLGV---LVDITL 65 (85)
Q Consensus 17 ~~PVvv~iHGGg~~~g~~~~~~~---~~la~~~~~ivVsv~YRlap---~Gfl~~ 65 (85)
.-||++|+|||||..+.....-. .....-.+..++.+||.|++ .|+.--
T Consensus 121 ~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~~~SILvLDYsLt~~~~~~~~yP 175 (374)
T PF10340_consen 121 SDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLPEVSILVLDYSLTSSDEHGHKYP 175 (374)
T ss_pred CCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcCCCeEEEEeccccccccCCCcCc
Confidence 35999999999999998763211 11111125688889999999 665433
No 14
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.38 E-value=0.00039 Score=54.08 Aligned_cols=53 Identities=32% Similarity=0.518 Sum_probs=34.6
Q ss_pred ceeeCCC-CCCCCccEEEEEeCCCccCCCCC-CCChHHHhhCCCeEEEEeCCCCCC
Q psy4014 6 RDFGKVG-QPLQKYPVLIYIHGESFEWNSGN-PYDGRILASYADFVVITLNYRLGV 59 (85)
Q Consensus 6 ~i~~p~~-~~~~~~PVvv~iHGGg~~~g~~~-~~~~~~la~~~~~ivVsv~YRlap 59 (85)
-++.|.. .+.++.|++||+|||-...-... ....+.++. .|++|+.+|||=+-
T Consensus 381 ~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~-~G~~V~~~n~RGS~ 435 (620)
T COG1506 381 WLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLAS-AGYAVLAPNYRGST 435 (620)
T ss_pred EEecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhc-CCeEEEEeCCCCCC
Confidence 3556654 33445899999999953332222 233466666 59999999999443
No 15
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=96.78 E-value=0.002 Score=45.02 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=34.9
Q ss_pred CCceeeCCCCCCCCccEEEEEeCCCccCCCCCCC----ChHHHhhCCCeEEEEeCCC
Q psy4014 4 YPRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPY----DGRILASYADFVVITLNYR 56 (85)
Q Consensus 4 ~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~----~~~~la~~~~~ivVsv~YR 56 (85)
-..+|.|......+.|+|+++||.+ ++...+ ....++.+.|++||.+|+.
T Consensus 28 ~~~v~~P~~~~~~~~P~vvllHG~~---~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~ 81 (275)
T TIGR02821 28 TFGVFLPPQAAAGPVPVLWYLSGLT---CTHENFMIKAGAQRFAAEHGLALVAPDTS 81 (275)
T ss_pred EEEEEcCCCccCCCCCEEEEccCCC---CCccHHHhhhHHHHHHhhcCcEEEEeCCC
Confidence 3568888753345689999999987 333322 1246666679999999983
No 16
>PLN00021 chlorophyllase
Probab=96.67 E-value=0.0039 Score=45.04 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=34.6
Q ss_pred CCCCceeeCCCCCCCCccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 2 PQYPRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 2 ~~~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
|+-..||+|.. ....|++||+||+++. ...+.. ..++. .|++|+.+|++
T Consensus 38 ~~p~~v~~P~~--~g~~PvVv~lHG~~~~---~~~y~~l~~~Las-~G~~VvapD~~ 88 (313)
T PLN00021 38 PKPLLVATPSE--AGTYPVLLFLHGYLLY---NSFYSQLLQHIAS-HGFIVVAPQLY 88 (313)
T ss_pred CceEEEEeCCC--CCCCCEEEEECCCCCC---cccHHHHHHHHHh-CCCEEEEecCC
Confidence 45567899963 4678999999999753 223332 55555 49999999965
No 17
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=96.57 E-value=0.0021 Score=44.57 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=35.4
Q ss_pred ceeeCCCCCCCCccEEEEEeCCCccCCCCCC-CChHHHhhCCCeEEEEeCC
Q psy4014 6 RDFGKVGQPLQKYPVLIYIHGESFEWNSGNP-YDGRILASYADFVVITLNY 55 (85)
Q Consensus 6 ~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~-~~~~~la~~~~~ivVsv~Y 55 (85)
.+|.|......+.|+||.+||.+-....... ..-..++++.+++|+-++-
T Consensus 4 ~lYvP~~~~~~~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~ 54 (220)
T PF10503_consen 4 RLYVPPGAPRGPVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQ 54 (220)
T ss_pred EEecCCCCCCCCCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccc
Confidence 6899986555578999999999743221111 1226788999999998874
No 18
>PLN02442 S-formylglutathione hydrolase
Probab=96.42 E-value=0.0042 Score=43.79 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=33.2
Q ss_pred CceeeCCCCCCCCccEEEEEeCCCccCCCCCC-CChHHHhhCCCeEEEEeCCC
Q psy4014 5 PRDFGKVGQPLQKYPVLIYIHGESFEWNSGNP-YDGRILASYADFVVITLNYR 56 (85)
Q Consensus 5 ~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~-~~~~~la~~~~~ivVsv~YR 56 (85)
..||.|....+.+.||++++||.+....+... .....+....+++||.+|..
T Consensus 34 ~~vy~P~~~~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~ 86 (283)
T PLN02442 34 FSVYFPPASDSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTS 86 (283)
T ss_pred EEEEcCCcccCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCC
Confidence 46788875445679999999986522211111 11234555679999999864
No 19
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=96.36 E-value=0.0048 Score=45.72 Aligned_cols=40 Identities=38% Similarity=0.573 Sum_probs=25.4
Q ss_pred CCccEEEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCCCCCC
Q psy4014 16 QKYPVLIYIHGESFEWNSGNPYD--GRILASYADFVVITLNYRLGV 59 (85)
Q Consensus 16 ~~~PVvv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~YRlap 59 (85)
.+.|||||-||-| |++..|. +..||.. |+||+++++|-+.
T Consensus 98 ~~~PvvIFSHGlg---g~R~~yS~~~~eLAS~-GyVV~aieHrDgS 139 (379)
T PF03403_consen 98 GKFPVVIFSHGLG---GSRTSYSAICGELASH-GYVVAAIEHRDGS 139 (379)
T ss_dssp S-EEEEEEE--TT-----TTTTHHHHHHHHHT-T-EEEEE---SS-
T ss_pred CCCCEEEEeCCCC---cchhhHHHHHHHHHhC-CeEEEEeccCCCc
Confidence 6799999999987 7777665 4888886 9999999999865
No 20
>PRK10115 protease 2; Provisional
Probab=96.26 E-value=0.012 Score=46.58 Aligned_cols=42 Identities=19% Similarity=0.078 Sum_probs=29.3
Q ss_pred CCCccEEEEEeCCCccCCCCCCCCh-HHHhhCCCeEEEEeCCCC
Q psy4014 15 LQKYPVLIYIHGESFEWNSGNPYDG-RILASYADFVVITLNYRL 57 (85)
Q Consensus 15 ~~~~PVvv~iHGGg~~~g~~~~~~~-~~la~~~~~ivVsv~YRl 57 (85)
..+.|++|++|||......+..... ..++. .|++|+.+|+|=
T Consensus 442 ~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~-rG~~v~~~n~RG 484 (686)
T PRK10115 442 KGHNPLLVYGYGSYGASIDADFSFSRLSLLD-RGFVYAIVHVRG 484 (686)
T ss_pred CCCCCEEEEEECCCCCCCCCCccHHHHHHHH-CCcEEEEEEcCC
Confidence 3456999999997655444443222 44555 599999999994
No 21
>PRK10566 esterase; Provisional
Probab=96.25 E-value=0.0098 Score=40.10 Aligned_cols=46 Identities=28% Similarity=0.324 Sum_probs=30.5
Q ss_pred eeCCCCCCCCccEEEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCCCC
Q psy4014 8 FGKVGQPLQKYPVLIYIHGESFEWNSGNPYD--GRILASYADFVVITLNYRL 57 (85)
Q Consensus 8 ~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~YRl 57 (85)
+.|......+.|++|++||.+ ++...+. ...++. .|+.|+.++||-
T Consensus 17 ~~p~~~~~~~~p~vv~~HG~~---~~~~~~~~~~~~l~~-~G~~v~~~d~~g 64 (249)
T PRK10566 17 AFPAGQRDTPLPTVFFYHGFT---SSKLVYSYFAVALAQ-AGFRVIMPDAPM 64 (249)
T ss_pred EcCCCCCCCCCCEEEEeCCCC---cccchHHHHHHHHHh-CCCEEEEecCCc
Confidence 445433345679999999964 3333333 355554 599999999995
No 22
>KOG3847|consensus
Probab=95.74 E-value=0.016 Score=42.98 Aligned_cols=41 Identities=37% Similarity=0.502 Sum_probs=33.6
Q ss_pred CCCccEEEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCCCCCC
Q psy4014 15 LQKYPVLIYIHGESFEWNSGNPYD--GRILASYADFVVITLNYRLGV 59 (85)
Q Consensus 15 ~~~~PVvv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~YRlap 59 (85)
..+.||+||-||=| |+++.|. +..+|.. |++|.++.+|-..
T Consensus 115 ~~k~PvvvFSHGLg---gsRt~YSa~c~~LASh-G~VVaavEHRD~S 157 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLG---GSRTLYSAYCTSLASH-GFVVAAVEHRDRS 157 (399)
T ss_pred CCCccEEEEecccc---cchhhHHHHhhhHhhC-ceEEEEeecccCc
Confidence 56899999999987 7777765 4777774 9999999999754
No 23
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=94.15 E-value=0.029 Score=32.79 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=33.4
Q ss_pred CCCCceeeCCCCCCCCccEEEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCCC
Q psy4014 2 PQYPRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYD--GRILASYADFVVITLNYR 56 (85)
Q Consensus 2 ~~~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~YR 56 (85)
.++...|.|... .+.+|+++||-+=-.+ .|. ...|+. .|+.|+..|+|
T Consensus 3 ~L~~~~w~p~~~---~k~~v~i~HG~~eh~~---ry~~~a~~L~~-~G~~V~~~D~r 52 (79)
T PF12146_consen 3 KLFYRRWKPENP---PKAVVVIVHGFGEHSG---RYAHLAEFLAE-QGYAVFAYDHR 52 (79)
T ss_pred EEEEEEecCCCC---CCEEEEEeCCcHHHHH---HHHHHHHHHHh-CCCEEEEECCC
Confidence 356678888632 6899999999852222 233 245554 69999999999
No 24
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=93.84 E-value=0.13 Score=39.51 Aligned_cols=51 Identities=10% Similarity=0.036 Sum_probs=34.0
Q ss_pred CCCceeeCCCCCCCCccEEEEEeCCCccCCCC--CCC-ChHHHhhCCCeEEEEeCCC
Q psy4014 3 QYPRDFGKVGQPLQKYPVLIYIHGESFEWNSG--NPY-DGRILASYADFVVITLNYR 56 (85)
Q Consensus 3 ~~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~--~~~-~~~~la~~~~~ivVsv~YR 56 (85)
++.++|.|.. ..+.|+||++||-+...+.. ... ....++. .|+.|+.+|+|
T Consensus 9 L~~~~~~P~~--~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~-~Gy~vv~~D~R 62 (550)
T TIGR00976 9 LAIDVYRPAG--GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVA-QGYAVVIQDTR 62 (550)
T ss_pred EEEEEEecCC--CCCCCEEEEecCCCCchhhccccccccHHHHHh-CCcEEEEEecc
Confidence 4567888864 34789999999876443211 111 2344555 59999999999
No 25
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=93.53 E-value=0.079 Score=32.37 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=25.4
Q ss_pred EEEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCCCCCC
Q psy4014 20 VLIYIHGESFEWNSGNPYD--GRILASYADFVVITLNYRLGV 59 (85)
Q Consensus 20 Vvv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~YRlap 59 (85)
+||++||++. +...+. ...++.. |+.++.++||..-
T Consensus 1 ~vv~~HG~~~---~~~~~~~~~~~l~~~-G~~v~~~~~~~~~ 38 (145)
T PF12695_consen 1 VVVLLHGWGG---SRRDYQPLAEALAEQ-GYAVVAFDYPGHG 38 (145)
T ss_dssp EEEEECTTTT---TTHHHHHHHHHHHHT-TEEEEEESCTTST
T ss_pred CEEEECCCCC---CHHHHHHHHHHHHHC-CCEEEEEecCCCC
Confidence 5899999974 333332 2556665 9999999998543
No 26
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=93.50 E-value=0.13 Score=36.37 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=29.7
Q ss_pred CCceeeCCCCCCCCccEEEEEeCCCccCCCCCC-CC--hHHHhhCCCeEEEEeCCC
Q psy4014 4 YPRDFGKVGQPLQKYPVLIYIHGESFEWNSGNP-YD--GRILASYADFVVITLNYR 56 (85)
Q Consensus 4 ~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~-~~--~~~la~~~~~ivVsv~YR 56 (85)
+...|.|... ....++||++||.+ ++... +. ...++. .|+.|+.+|+|
T Consensus 46 ~~~~~~~~~~-~~~~~~VvllHG~~---~~~~~~~~~~~~~L~~-~Gy~V~~~D~r 96 (330)
T PLN02298 46 FTRSWLPSSS-SPPRALIFMVHGYG---NDISWTFQSTAIFLAQ-MGFACFALDLE 96 (330)
T ss_pred EEEEEecCCC-CCCceEEEEEcCCC---CCcceehhHHHHHHHh-CCCEEEEecCC
Confidence 3345555422 24578999999986 22222 22 234444 59999999999
No 27
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.47 E-value=0.12 Score=37.84 Aligned_cols=44 Identities=27% Similarity=0.387 Sum_probs=32.5
Q ss_pred ceeeCCCCCCCCccEEEEEeCCCccCCCCCC--C--ChHHHhhCCCeEEEEe
Q psy4014 6 RDFGKVGQPLQKYPVLIYIHGESFEWNSGNP--Y--DGRILASYADFVVITL 53 (85)
Q Consensus 6 ~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~--~--~~~~la~~~~~ivVsv 53 (85)
.+|.|...++.+ |+||.+||++ ++... + .=..++.++++.|+-+
T Consensus 50 ~l~vP~g~~~~a-pLvv~LHG~~---~sgag~~~~sg~d~lAd~~gFlV~yP 97 (312)
T COG3509 50 RLYVPPGLPSGA-PLVVVLHGSG---GSGAGQLHGTGWDALADREGFLVAYP 97 (312)
T ss_pred EEEcCCCCCCCC-CEEEEEecCC---CChHHhhcccchhhhhcccCcEEECc
Confidence 467888655444 9999999997 44432 2 2288899999999988
No 28
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=93.39 E-value=0.08 Score=37.95 Aligned_cols=45 Identities=18% Similarity=0.360 Sum_probs=28.7
Q ss_pred ceeeCCCCCCCCccEEEEEeCCCccCCCCCC-CCh--HHHhhCCCeEEEEeCCC
Q psy4014 6 RDFGKVGQPLQKYPVLIYIHGESFEWNSGNP-YDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 6 ~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~-~~~--~~la~~~~~ivVsv~YR 56 (85)
..|.|.. ....|++|++||.+. +... +.. ..++. .|+.|+.+|||
T Consensus 77 ~~~~p~~--~~~~~~iv~lHG~~~---~~~~~~~~~~~~l~~-~g~~v~~~D~~ 124 (349)
T PLN02385 77 KSWLPEN--SRPKAAVCFCHGYGD---TCTFFFEGIARKIAS-SGYGVFAMDYP 124 (349)
T ss_pred EEEecCC--CCCCeEEEEECCCCC---ccchHHHHHHHHHHh-CCCEEEEecCC
Confidence 3455542 245689999999753 2222 222 34444 59999999999
No 29
>COG4099 Predicted peptidase [General function prediction only]
Probab=93.08 E-value=0.1 Score=38.59 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=31.2
Q ss_pred CceeeCCC-CCCCCc-cEEEEEeCCCccCCCCCC--CCh----HHHhhCCCeEEEEeCCC
Q psy4014 5 PRDFGKVG-QPLQKY-PVLIYIHGESFEWNSGNP--YDG----RILASYADFVVITLNYR 56 (85)
Q Consensus 5 ~~i~~p~~-~~~~~~-PVvv~iHGGg~~~g~~~~--~~~----~~la~~~~~ivVsv~YR 56 (85)
-++|+|.+ +++++. |.++|+||+|-...+... +.+ .+...+.+|-|.+++|.
T Consensus 176 Yrly~Pkdy~pdkky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~ 235 (387)
T COG4099 176 YRLYTPKDYAPDKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYN 235 (387)
T ss_pred EEEecccccCCCCccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEccccc
Confidence 46889975 455555 999999999854443321 111 22223445666677665
No 30
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=93.02 E-value=0.039 Score=19.23 Aligned_cols=6 Identities=33% Similarity=0.833 Sum_probs=4.9
Q ss_pred eCCCcc
Q psy4014 25 HGESFE 30 (85)
Q Consensus 25 HGGg~~ 30 (85)
|||+|-
T Consensus 2 hgG~Wg 7 (8)
T PF03991_consen 2 HGGGWG 7 (8)
T ss_pred CCCcCC
Confidence 899984
No 31
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=92.84 E-value=0.056 Score=39.25 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=29.7
Q ss_pred CCCCceeeCCCCCCCCccEEEEEeCCCccCCCCCCCChHHHhhCCCeEEEEeCCC
Q psy4014 2 PQYPRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYDGRILASYADFVVITLNYR 56 (85)
Q Consensus 2 ~~~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~~~~la~~~~~ivVsv~YR 56 (85)
+++..++.|.. ...++|++|.+||-|...+ .......++. .|++++.++-|
T Consensus 68 ~V~g~l~~P~~-~~~~~Pavv~~hGyg~~~~--~~~~~~~~a~-~G~~vl~~d~r 118 (320)
T PF05448_consen 68 RVYGWLYRPKN-AKGKLPAVVQFHGYGGRSG--DPFDLLPWAA-AGYAVLAMDVR 118 (320)
T ss_dssp EEEEEEEEES--SSSSEEEEEEE--TT--GG--GHHHHHHHHH-TT-EEEEE--T
T ss_pred EEEEEEEecCC-CCCCcCEEEEecCCCCCCC--Cccccccccc-CCeEEEEecCC
Confidence 35667888984 3578999999999874422 1222345565 49999999998
No 32
>PHA02857 monoglyceride lipase; Provisional
Probab=92.69 E-value=0.14 Score=34.97 Aligned_cols=47 Identities=13% Similarity=0.257 Sum_probs=31.3
Q ss_pred CCCceeeCCCCCCCCccEEEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCCC
Q psy4014 3 QYPRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYD--GRILASYADFVVITLNYR 56 (85)
Q Consensus 3 ~~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~YR 56 (85)
++..+|.|. ....|+++++||.+ ++...+. ...++. .|+.|+++|+|
T Consensus 13 l~~~~~~~~---~~~~~~v~llHG~~---~~~~~~~~~~~~l~~-~g~~via~D~~ 61 (276)
T PHA02857 13 IYCKYWKPI---TYPKALVFISHGAG---EHSGRYEELAENISS-LGILVFSHDHI 61 (276)
T ss_pred EEEEeccCC---CCCCEEEEEeCCCc---cccchHHHHHHHHHh-CCCEEEEccCC
Confidence 345677774 24568899999975 3333333 255554 49999999999
No 33
>PRK10673 acyl-CoA esterase; Provisional
Probab=90.99 E-value=0.4 Score=31.97 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=25.0
Q ss_pred CCCCccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 14 PLQKYPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 14 ~~~~~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
.....|.||++||.+ ++...+.. ..++ .++-|+.+|.|
T Consensus 12 ~~~~~~~iv~lhG~~---~~~~~~~~~~~~l~--~~~~vi~~D~~ 51 (255)
T PRK10673 12 NPHNNSPIVLVHGLF---GSLDNLGVLARDLV--NDHDIIQVDMR 51 (255)
T ss_pred CCCCCCCEEEECCCC---CchhHHHHHHHHHh--hCCeEEEECCC
Confidence 344568999999974 33333332 3333 36889999998
No 34
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=90.73 E-value=0.38 Score=31.48 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=24.4
Q ss_pred CCccEEEEEeCCCccCCCCCCCCh-HHHhhCCCeEEEEeCCC
Q psy4014 16 QKYPVLIYIHGESFEWNSGNPYDG-RILASYADFVVITLNYR 56 (85)
Q Consensus 16 ~~~PVvv~iHGGg~~~g~~~~~~~-~~la~~~~~ivVsv~YR 56 (85)
...|++|++||.+ ++...+.. ..... .++.|+.+|+|
T Consensus 11 ~~~~~iv~lhG~~---~~~~~~~~~~~~l~-~~~~vi~~D~~ 48 (257)
T TIGR03611 11 ADAPVVVLSSGLG---GSGSYWAPQLDVLT-QRFHVVTYDHR 48 (257)
T ss_pred CCCCEEEEEcCCC---cchhHHHHHHHHHH-hccEEEEEcCC
Confidence 4578999999976 33333332 22222 37999999998
No 35
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=90.64 E-value=0.25 Score=35.21 Aligned_cols=47 Identities=23% Similarity=0.397 Sum_probs=33.2
Q ss_pred CCCCceeeCCCCCCCCccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeC
Q psy4014 2 PQYPRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLN 54 (85)
Q Consensus 2 ~~~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~ 54 (85)
|--+.|+.|+. ....||++|+||=. +.. ..|.. +.++. .|+|||.++
T Consensus 3 p~~l~v~~P~~--~g~yPVv~f~~G~~-~~~--s~Ys~ll~hvAS-hGyIVV~~d 51 (259)
T PF12740_consen 3 PKPLLVYYPSS--AGTYPVVLFLHGFL-LIN--SWYSQLLEHVAS-HGYIVVAPD 51 (259)
T ss_pred CCCeEEEecCC--CCCcCEEEEeCCcC-CCH--HHHHHHHHHHHh-CceEEEEec
Confidence 34467899974 45699999999865 222 22443 66666 599999999
No 36
>PRK10985 putative hydrolase; Provisional
Probab=90.64 E-value=0.27 Score=35.00 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=25.1
Q ss_pred CCccEEEEEeCCCccCCCCCC-CC---hHHHhhCCCeEEEEeCCCC
Q psy4014 16 QKYPVLIYIHGESFEWNSGNP-YD---GRILASYADFVVITLNYRL 57 (85)
Q Consensus 16 ~~~PVvv~iHGGg~~~g~~~~-~~---~~~la~~~~~ivVsv~YRl 57 (85)
...|++|++||.+ |+... +. ...+. +.|+.|+.+|||=
T Consensus 56 ~~~p~vll~HG~~---g~~~~~~~~~~~~~l~-~~G~~v~~~d~rG 97 (324)
T PRK10985 56 RHKPRLVLFHGLE---GSFNSPYAHGLLEAAQ-KRGWLGVVMHFRG 97 (324)
T ss_pred CCCCEEEEeCCCC---CCCcCHHHHHHHHHHH-HCCCEEEEEeCCC
Confidence 3579999999875 32221 21 13344 4699999999993
No 37
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=90.39 E-value=0.18 Score=37.42 Aligned_cols=46 Identities=24% Similarity=0.368 Sum_probs=29.8
Q ss_pred CceeeCCCCCCCCccEEEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCCC
Q psy4014 5 PRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYD--GRILASYADFVVITLNYR 56 (85)
Q Consensus 5 ~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~YR 56 (85)
...|.|.. ....|+||++||.+ ++...+. ...++. .|+.|+.+|+|
T Consensus 125 ~~~~~p~~--~~~~~~Vl~lHG~~---~~~~~~~~~a~~L~~-~Gy~V~~~D~r 172 (395)
T PLN02652 125 CRSWAPAA--GEMRGILIIIHGLN---EHSGRYLHFAKQLTS-CGFGVYAMDWI 172 (395)
T ss_pred EEEecCCC--CCCceEEEEECCch---HHHHHHHHHHHHHHH-CCCEEEEeCCC
Confidence 34566642 34578999999975 2322232 244544 59999999999
No 38
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=89.91 E-value=0.21 Score=34.72 Aligned_cols=59 Identities=8% Similarity=-0.008 Sum_probs=34.4
Q ss_pred CCCceeeCCCCCCCCccEEEEEeCCCccCCCCC---CCChH------HHhhCCCeEEEEeCCCCCCcccCCCC
Q psy4014 3 QYPRDFGKVGQPLQKYPVLIYIHGESFEWNSGN---PYDGR------ILASYADFVVITLNYRLGVLVDITLK 66 (85)
Q Consensus 3 ~~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~---~~~~~------~la~~~~~ivVsv~YRlap~Gfl~~~ 66 (85)
+..+||.|......+.||||..|+=+-...... ..... .++. .|++||.+|-| |+..|+
T Consensus 5 L~adv~~P~~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~-~GY~vV~~D~R----G~g~S~ 72 (272)
T PF02129_consen 5 LAADVYRPGADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAE-RGYAVVVQDVR----GTGGSE 72 (272)
T ss_dssp EEEEEEEE--TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHH-TT-EEEEEE-T----TSTTS-
T ss_pred EEEEEEecCCCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHh-CCCEEEEECCc----ccccCC
Confidence 457899993245678999999988762111111 11111 2555 49999999999 655544
No 39
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=88.58 E-value=0.91 Score=30.02 Aligned_cols=37 Identities=19% Similarity=0.063 Sum_probs=23.2
Q ss_pred ccEEEEEeCCCccCCCCCCCCh-HHHhhCCCeEEEEeCCC
Q psy4014 18 YPVLIYIHGESFEWNSGNPYDG-RILASYADFVVITLNYR 56 (85)
Q Consensus 18 ~PVvv~iHGGg~~~g~~~~~~~-~~la~~~~~ivVsv~YR 56 (85)
.|.+|++||+.... ...+.. ..+....++-|+.+|+|
T Consensus 25 ~~~vl~~hG~~g~~--~~~~~~~~~~l~~~g~~vi~~d~~ 62 (288)
T TIGR01250 25 KIKLLLLHGGPGMS--HEYLENLRELLKEEGREVIMYDQL 62 (288)
T ss_pred CCeEEEEcCCCCcc--HHHHHHHHHHHHhcCCEEEEEcCC
Confidence 57889999975221 122222 33334448999999999
No 40
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=88.52 E-value=0.61 Score=34.97 Aligned_cols=51 Identities=10% Similarity=0.003 Sum_probs=30.4
Q ss_pred CceeeCCCCCCCCccEEEEEeCCCccCCCCCCCChHHHhhC---CCeEEEEeCC
Q psy4014 5 PRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYDGRILASY---ADFVVITLNY 55 (85)
Q Consensus 5 ~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~~~~la~~---~~~ivVsv~Y 55 (85)
..||+|......++||++++||+.|.........-..+..+ ..+++|.++-
T Consensus 196 v~VY~P~~y~~~~~PvlyllDG~~w~~~~~~~~~ld~li~~g~i~P~ivV~id~ 249 (411)
T PRK10439 196 VWIYTTGDAAPEERPLAILLDGQFWAESMPVWPALDSLTHRGQLPPAVYLLIDA 249 (411)
T ss_pred EEEEECCCCCCCCCCEEEEEECHHhhhcCCHHHHHHHHHHcCCCCceEEEEECC
Confidence 45888875334678999999999986432211011222222 2567788864
No 41
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=88.31 E-value=1.1 Score=31.82 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=25.5
Q ss_pred CCccEEEEEeCCCccCCC-CCCCC--hHHHhhCCCeEEEEeCCCC
Q psy4014 16 QKYPVLIYIHGESFEWNS-GNPYD--GRILASYADFVVITLNYRL 57 (85)
Q Consensus 16 ~~~PVvv~iHGGg~~~g~-~~~~~--~~~la~~~~~ivVsv~YRl 57 (85)
...|++|++||-+..... ...+. ...++. .|+.|+.+|||-
T Consensus 23 ~~~~~VlllHG~g~~~~~~~~~~~~la~~La~-~Gy~Vl~~Dl~G 66 (266)
T TIGR03101 23 GPRGVVIYLPPFAEEMNKSRRMVALQARAFAA-GGFGVLQIDLYG 66 (266)
T ss_pred CCceEEEEECCCcccccchhHHHHHHHHHHHH-CCCEEEEECCCC
Confidence 347999999995432221 11111 244544 599999999993
No 42
>KOG2100|consensus
Probab=88.23 E-value=1.1 Score=36.22 Aligned_cols=54 Identities=20% Similarity=0.280 Sum_probs=35.2
Q ss_pred eeeCCC-CCCCCccEEEEEeCCCccCCCCCCC--C-hHHHhhCCCeEEEEeCCCCCCc
Q psy4014 7 DFGKVG-QPLQKYPVLIYIHGESFEWNSGNPY--D-GRILASYADFVVITLNYRLGVL 60 (85)
Q Consensus 7 i~~p~~-~~~~~~PVvv~iHGGg~~~g~~~~~--~-~~~la~~~~~ivVsv~YRlap~ 60 (85)
+..|.+ .+.++.|++|++|||-...-..+.+ + ...++...|++|+.+|||=+.+
T Consensus 514 ~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~ 571 (755)
T KOG2100|consen 514 LILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGG 571 (755)
T ss_pred EecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCC
Confidence 344553 4556899999999997411111111 1 2446677899999999996654
No 43
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=88.11 E-value=0.97 Score=29.09 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 17 KYPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 17 ~~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
..|++|++||-| ++...+.. ..+. .++.|+++|+|
T Consensus 12 ~~~~li~~hg~~---~~~~~~~~~~~~l~--~~~~v~~~d~~ 48 (251)
T TIGR02427 12 GAPVLVFINSLG---TDLRMWDPVLPALT--PDFRVLRYDKR 48 (251)
T ss_pred CCCeEEEEcCcc---cchhhHHHHHHHhh--cccEEEEecCC
Confidence 569999999865 22233332 2332 48999999998
No 44
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=87.53 E-value=0.96 Score=29.06 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=22.2
Q ss_pred ccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 18 YPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 18 ~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
.|.+|++||.+ ++...+.. ..++ .++.|+++++|
T Consensus 4 ~~~iv~~HG~~---~~~~~~~~~~~~l~--~~~~vi~~d~~ 39 (245)
T TIGR01738 4 NVHLVLIHGWG---MNAEVFRCLDEELS--AHFTLHLVDLP 39 (245)
T ss_pred CceEEEEcCCC---CchhhHHHHHHhhc--cCeEEEEecCC
Confidence 46789999854 33333332 3333 36899999998
No 45
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=87.46 E-value=1.1 Score=31.22 Aligned_cols=37 Identities=27% Similarity=0.487 Sum_probs=22.8
Q ss_pred cEEEEEeCC-CccCCCCCCCC--hHHHhhCCCeEEEEeCCC
Q psy4014 19 PVLIYIHGE-SFEWNSGNPYD--GRILASYADFVVITLNYR 56 (85)
Q Consensus 19 PVvv~iHGG-g~~~g~~~~~~--~~~la~~~~~ivVsv~YR 56 (85)
+.+|++||| ++..|+...+. ...++. .|+.++.+|+|
T Consensus 27 ~~vv~i~gg~~~~~g~~~~~~~la~~l~~-~G~~v~~~Dl~ 66 (274)
T TIGR03100 27 TGVLIVVGGPQYRVGSHRQFVLLARRLAE-AGFPVLRFDYR 66 (274)
T ss_pred CeEEEEeCCccccCCchhHHHHHHHHHHH-CCCEEEEeCCC
Confidence 455555654 45555544332 244444 59999999998
No 46
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=87.29 E-value=1.1 Score=31.68 Aligned_cols=41 Identities=22% Similarity=0.399 Sum_probs=25.1
Q ss_pred CCccEEEEEeCCCccCCCCCCC-Ch--HHHhhCCCeEEEEeCCCCC
Q psy4014 16 QKYPVLIYIHGESFEWNSGNPY-DG--RILASYADFVVITLNYRLG 58 (85)
Q Consensus 16 ~~~PVvv~iHGGg~~~g~~~~~-~~--~~la~~~~~ivVsv~YRla 58 (85)
...|++|+|||-+ ......+ .. ..+....++-|+.+||+-.
T Consensus 34 ~~~p~vilIHG~~--~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~ 77 (275)
T cd00707 34 PSRPTRFIIHGWT--SSGEESWISDLRKAYLSRGDYNVIVVDWGRG 77 (275)
T ss_pred CCCCcEEEEcCCC--CCCCCcHHHHHHHHHHhcCCCEEEEEECccc
Confidence 4579999999943 2221222 11 2344446899999999853
No 47
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=86.55 E-value=0.38 Score=32.48 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=21.0
Q ss_pred CceeeCCC-CCCCCccEEEEEeC-CCcc
Q psy4014 5 PRDFGKVG-QPLQKYPVLIYIHG-ESFE 30 (85)
Q Consensus 5 ~~i~~p~~-~~~~~~PVvv~iHG-Gg~~ 30 (85)
..||.|.+ ....+.|||+++|| ++|.
T Consensus 10 ~~VylP~~y~~~~~~PvlylldG~~~~~ 37 (251)
T PF00756_consen 10 VWVYLPPGYDPSKPYPVLYLLDGQSGWF 37 (251)
T ss_dssp EEEEECTTGGTTTTEEEEEEESHTTHHH
T ss_pred EEEEECCCCCCCCCCEEEEEccCCcccc
Confidence 46889986 56778999999999 5555
No 48
>KOG2281|consensus
Probab=86.29 E-value=1.3 Score=35.98 Aligned_cols=55 Identities=25% Similarity=0.305 Sum_probs=39.0
Q ss_pred CCceeeCCC-CCCCCccEEEEEeCCCccCCCCCCCC------hHHHhhCCCeEEEEeCCCCCC
Q psy4014 4 YPRDFGKVG-QPLQKYPVLIYIHGESFEWNSGNPYD------GRILASYADFVVITLNYRLGV 59 (85)
Q Consensus 4 ~~~i~~p~~-~~~~~~PVvv~iHGGg~~~g~~~~~~------~~~la~~~~~ivVsv~YRlap 59 (85)
|.-||.|.+ .+.++.|+++++.||--+---.+.+. -.+|+. .|++||-+|=|=+.
T Consensus 627 YgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~Las-lGy~Vv~IDnRGS~ 688 (867)
T KOG2281|consen 627 YGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLAS-LGYVVVFIDNRGSA 688 (867)
T ss_pred EEEEEccccCCCCCCCceEEEEcCCCceEEeeccccceehhhhhhhhh-cceEEEEEcCCCcc
Confidence 566888875 56778999999999975544333332 145555 59999999999443
No 49
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=86.14 E-value=1.3 Score=30.78 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=25.5
Q ss_pred CCCccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 15 LQKYPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 15 ~~~~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
....|.+|++||.+. +...+.. ..|.. .++-|+.+++|
T Consensus 15 ~~~~p~vvliHG~~~---~~~~w~~~~~~L~~-~g~~vi~~dl~ 54 (273)
T PLN02211 15 NRQPPHFVLIHGISG---GSWCWYKIRCLMEN-SGYKVTCIDLK 54 (273)
T ss_pred cCCCCeEEEECCCCC---CcCcHHHHHHHHHh-CCCEEEEeccc
Confidence 345689999999763 3333433 33443 48999999988
No 50
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=84.57 E-value=1 Score=28.34 Aligned_cols=31 Identities=26% Similarity=0.574 Sum_probs=21.2
Q ss_pred EEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 21 LIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 21 vv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
||++||.+ ++...+.. ..++ .++.|+++|+|
T Consensus 1 vv~~hG~~---~~~~~~~~~~~~l~--~~~~v~~~d~~ 33 (228)
T PF12697_consen 1 VVFLHGFG---GSSESWDPLAEALA--RGYRVIAFDLP 33 (228)
T ss_dssp EEEE-STT---TTGGGGHHHHHHHH--TTSEEEEEECT
T ss_pred eEEECCCC---CCHHHHHHHHHHHh--CCCEEEEEecC
Confidence 68999997 33344443 4453 59999999999
No 51
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=84.50 E-value=1.2 Score=28.44 Aligned_cols=33 Identities=27% Similarity=0.679 Sum_probs=22.8
Q ss_pred cEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 19 PVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 19 PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
|++|++||.+ ++...+.. ..++ .++.|+.+|+|
T Consensus 2 ~~vv~~hG~~---~~~~~~~~~~~~L~--~~~~v~~~d~~ 36 (251)
T TIGR03695 2 PVLVFLHGFL---GSGADWQALIELLG--PHFRCLAIDLP 36 (251)
T ss_pred CEEEEEcCCC---CchhhHHHHHHHhc--ccCeEEEEcCC
Confidence 7899999965 34333433 4444 58999999988
No 52
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=83.86 E-value=1.5 Score=32.83 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=25.0
Q ss_pred eeCCCCCCCCccEEEEEeCCCccCCCC-CCCC--hHHHhhCCCeEEEEeCCC
Q psy4014 8 FGKVGQPLQKYPVLIYIHGESFEWNSG-NPYD--GRILASYADFVVITLNYR 56 (85)
Q Consensus 8 ~~p~~~~~~~~PVvv~iHGGg~~~g~~-~~~~--~~~la~~~~~ivVsv~YR 56 (85)
+.|. ...+.|+||.+||.+ +.. ..+. ...++ ..|+.|+++|+|
T Consensus 186 ~~P~--~~~~~P~Vli~gG~~---~~~~~~~~~~~~~La-~~Gy~vl~~D~p 231 (414)
T PRK05077 186 HLPK--GDGPFPTVLVCGGLD---SLQTDYYRLFRDYLA-PRGIAMLTIDMP 231 (414)
T ss_pred EECC--CCCCccEEEEeCCcc---cchhhhHHHHHHHHH-hCCCEEEEECCC
Confidence 4554 235678877654432 221 1222 23444 459999999999
No 53
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=83.51 E-value=1.5 Score=29.23 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=23.0
Q ss_pred CccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 17 KYPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 17 ~~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
..|++|++||.+ ++...+.. ..++. ++-|+.+|+|
T Consensus 27 ~~~~vv~~hG~~---~~~~~~~~~~~~l~~--~~~vi~~D~~ 63 (278)
T TIGR03056 27 AGPLLLLLHGTG---ASTHSWRDLMPPLAR--SFRVVAPDLP 63 (278)
T ss_pred CCCeEEEEcCCC---CCHHHHHHHHHHHhh--CcEEEeecCC
Confidence 358999999965 33333332 33333 6889999999
No 54
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=82.90 E-value=1.1 Score=29.67 Aligned_cols=33 Identities=24% Similarity=0.502 Sum_probs=22.1
Q ss_pred ccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 18 YPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 18 ~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
.|+||++||.+. +...+.. ..+ .++-|+++|+|
T Consensus 2 ~p~vvllHG~~~---~~~~w~~~~~~l---~~~~vi~~D~~ 36 (242)
T PRK11126 2 LPWLVFLHGLLG---SGQDWQPVGEAL---PDYPRLYIDLP 36 (242)
T ss_pred CCEEEEECCCCC---ChHHHHHHHHHc---CCCCEEEecCC
Confidence 378999999863 3333332 222 37899999998
No 55
>PLN02511 hydrolase
Probab=82.64 E-value=1.3 Score=32.53 Aligned_cols=39 Identities=28% Similarity=0.349 Sum_probs=24.9
Q ss_pred CCccEEEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCCC
Q psy4014 16 QKYPVLIYIHGESFEWNSGNPYD--GRILASYADFVVITLNYR 56 (85)
Q Consensus 16 ~~~PVvv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~YR 56 (85)
...|+||++||.+- ++...+. ......+.|+-|+.+|+|
T Consensus 98 ~~~p~vvllHG~~g--~s~~~y~~~~~~~~~~~g~~vv~~d~r 138 (388)
T PLN02511 98 ADAPVLILLPGLTG--GSDDSYVRHMLLRARSKGWRVVVFNSR 138 (388)
T ss_pred CCCCEEEEECCCCC--CCCCHHHHHHHHHHHHCCCEEEEEecC
Confidence 35699999999752 2222222 122223469999999999
No 56
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=82.17 E-value=1.5 Score=31.97 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=30.6
Q ss_pred CCceeeCCCCCCCCccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 4 YPRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 4 ~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
-+-|++|. .....||++|+||=. .- ...|.. +.++. .|+|||+++--
T Consensus 34 pLlI~tP~--~~G~yPVilF~HG~~--l~-ns~Ys~lL~HIAS-HGfIVVAPQl~ 82 (307)
T PF07224_consen 34 PLLIVTPS--EAGTYPVILFLHGFN--LY-NSFYSQLLAHIAS-HGFIVVAPQLY 82 (307)
T ss_pred CeEEecCC--cCCCccEEEEeechh--hh-hHHHHHHHHHHhh-cCeEEEechhh
Confidence 35677775 356789999999843 22 223333 44444 69999999744
No 57
>PRK10349 carboxylesterase BioH; Provisional
Probab=80.95 E-value=2.1 Score=28.79 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=22.1
Q ss_pred ccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 18 YPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 18 ~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
-|.||++||.+ ++...+.. ..+. ..+-|+++|+|
T Consensus 13 ~~~ivllHG~~---~~~~~w~~~~~~L~--~~~~vi~~Dl~ 48 (256)
T PRK10349 13 NVHLVLLHGWG---LNAEVWRCIDEELS--SHFTLHLVDLP 48 (256)
T ss_pred CCeEEEECCCC---CChhHHHHHHHHHh--cCCEEEEecCC
Confidence 35699999964 33333443 3343 36888999988
No 58
>KOG1455|consensus
Probab=80.68 E-value=1.7 Score=31.90 Aligned_cols=48 Identities=17% Similarity=0.292 Sum_probs=31.2
Q ss_pred CceeeCCCCCCCCccEEEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCCC
Q psy4014 5 PRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYD--GRILASYADFVVITLNYR 56 (85)
Q Consensus 5 ~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~YR 56 (85)
..-|.|.. .+..+..++++||.|-... ..+. ...++. .|+.|.++||+
T Consensus 42 t~~W~p~~-~~~pr~lv~~~HG~g~~~s--~~~~~~a~~l~~-~g~~v~a~D~~ 91 (313)
T KOG1455|consen 42 TQSWLPLS-GTEPRGLVFLCHGYGEHSS--WRYQSTAKRLAK-SGFAVYAIDYE 91 (313)
T ss_pred EEecccCC-CCCCceEEEEEcCCcccch--hhHHHHHHHHHh-CCCeEEEeecc
Confidence 34566653 2367788899999872221 1232 355665 59999999998
No 59
>COG0400 Predicted esterase [General function prediction only]
Probab=80.53 E-value=4 Score=28.05 Aligned_cols=50 Identities=12% Similarity=-0.029 Sum_probs=26.7
Q ss_pred CceeeCCCCCCCCccEEEEEeCCCccCCCCCCCChHHHhhCCCeEEEEeCCCC
Q psy4014 5 PRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYDGRILASYADFVVITLNYRL 57 (85)
Q Consensus 5 ~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~~~~la~~~~~ivVsv~YRl 57 (85)
..+.......+...|++|++||=| |+...+-+..-...-+..+++++=+.
T Consensus 5 ~~~~~i~~~~~p~~~~iilLHG~G---gde~~~~~~~~~~~P~~~~is~rG~v 54 (207)
T COG0400 5 PFIPRIEKPGDPAAPLLILLHGLG---GDELDLVPLPELILPNATLVSPRGPV 54 (207)
T ss_pred cccccccCCCCCCCcEEEEEecCC---CChhhhhhhhhhcCCCCeEEcCCCCc
Confidence 344333334456778999999998 55543333111111245555554433
No 60
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=80.43 E-value=4.4 Score=30.39 Aligned_cols=56 Identities=18% Similarity=0.037 Sum_probs=37.4
Q ss_pred CCCCceeeCCCCCC----CCccEEEEEeCCCccCCCCCCC--ChHHHhhCCCeEEEEeCCCCCCcc
Q psy4014 2 PQYPRDFGKVGQPL----QKYPVLIYIHGESFEWNSGNPY--DGRILASYADFVVITLNYRLGVLV 61 (85)
Q Consensus 2 ~~~~~i~~p~~~~~----~~~PVvv~iHGGg~~~g~~~~~--~~~~la~~~~~ivVsv~YRlap~G 61 (85)
++.+++|.|+.... ..+|++++-||-| ++.+.+ ....++. .|++|..+++--+..|
T Consensus 51 ~~~v~~~~p~~~~~~~~~~~~PlvvlshG~G---s~~~~f~~~A~~lAs-~Gf~Va~~~hpgs~~~ 112 (365)
T COG4188 51 ERPVDLRLPQGGTGTVALYLLPLVVLSHGSG---SYVTGFAWLAEHLAS-YGFVVAAPDHPGSNAG 112 (365)
T ss_pred ccccceeccCCCccccccCcCCeEEecCCCC---CCccchhhhHHHHhh-CceEEEeccCCCcccc
Confidence 35677888885444 4799999999987 333322 2345554 5999998887654444
No 61
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=79.80 E-value=2.1 Score=31.70 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCCC
Q psy4014 17 KYPVLIYIHGESFEWNSGNPYD--GRILASYADFVVITLNYR 56 (85)
Q Consensus 17 ~~PVvv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~YR 56 (85)
..|+||++||.+.. ...+. ...++. ++.|+.+|+|
T Consensus 104 ~~p~vvllHG~~~~---~~~~~~~~~~L~~--~~~vi~~D~r 140 (402)
T PLN02894 104 DAPTLVMVHGYGAS---QGFFFRNFDALAS--RFRVIAIDQL 140 (402)
T ss_pred CCCEEEEECCCCcc---hhHHHHHHHHHHh--CCEEEEECCC
Confidence 45899999998642 22222 133443 6899999999
No 62
>KOG3101|consensus
Probab=79.61 E-value=2.9 Score=29.82 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=31.4
Q ss_pred ceeeCCCCC-CCCccEEEEEeCCCccCCCCCCCC---hHHHhhCCCeEEEEeCC
Q psy4014 6 RDFGKVGQP-LQKYPVLIYIHGESFEWNSGNPYD---GRILASYADFVVITLNY 55 (85)
Q Consensus 6 ~i~~p~~~~-~~~~PVvv~iHGGg~~~g~~~~~~---~~~la~~~~~ivVsv~Y 55 (85)
+||.|...+ .++.|++.|+-|- .....+... -++.|.+.|++||.+|-
T Consensus 31 ~vylPp~a~~~k~~P~lf~LSGL--TCT~~Nfi~Ksg~qq~As~hgl~vV~PDT 82 (283)
T KOG3101|consen 31 GVYLPPDAPRGKRCPVLFYLSGL--TCTHENFIEKSGFQQQASKHGLAVVAPDT 82 (283)
T ss_pred EEecCCCcccCCcCceEEEecCC--cccchhhHhhhhHHHhHhhcCeEEECCCC
Confidence 577776544 4458999998653 233323222 27778889999998864
No 63
>PRK00870 haloalkane dehalogenase; Provisional
Probab=77.63 E-value=3.1 Score=28.88 Aligned_cols=35 Identities=31% Similarity=0.411 Sum_probs=23.5
Q ss_pred ccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 18 YPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 18 ~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
.|.||++||.+ ++...+.. ..|+. .++-|+++|.|
T Consensus 46 ~~~lvliHG~~---~~~~~w~~~~~~L~~-~gy~vi~~Dl~ 82 (302)
T PRK00870 46 GPPVLLLHGEP---SWSYLYRKMIPILAA-AGHRVIAPDLI 82 (302)
T ss_pred CCEEEEECCCC---CchhhHHHHHHHHHh-CCCEEEEECCC
Confidence 57899999964 33333332 34443 48999999998
No 64
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=76.22 E-value=5.9 Score=29.98 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=24.1
Q ss_pred eeeCCCCCCCCccEEEEEeCCCccC----CCCC-------CCC------hHHHhhCCCeEEEEeCCC
Q psy4014 7 DFGKVGQPLQKYPVLIYIHGESFEW----NSGN-------PYD------GRILASYADFVVITLNYR 56 (85)
Q Consensus 7 i~~p~~~~~~~~PVvv~iHGGg~~~----g~~~-------~~~------~~~la~~~~~ivVsv~YR 56 (85)
++.|... ..+.|+|+.+||-|... |-.. .+. ...|+. .|++|+++|-+
T Consensus 105 lLvPd~~-~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk-~GYVvla~D~~ 169 (390)
T PF12715_consen 105 LLVPDGA-KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAK-RGYVVLAPDAL 169 (390)
T ss_dssp EEEETT---S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHT-TTSEEEEE--T
T ss_pred EEecCCC-CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHh-CCCEEEEEccc
Confidence 5667643 67899999999876421 1111 011 245555 59999999843
No 65
>PRK10749 lysophospholipase L2; Provisional
Probab=75.80 E-value=3.5 Score=29.32 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=24.2
Q ss_pred CccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 17 KYPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 17 ~~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
..++|+++||-+ ++...|.. ..++ ..|+.|+.+|+|
T Consensus 53 ~~~~vll~HG~~---~~~~~y~~~~~~l~-~~g~~v~~~D~~ 90 (330)
T PRK10749 53 HDRVVVICPGRI---ESYVKYAELAYDLF-HLGYDVLIIDHR 90 (330)
T ss_pred CCcEEEEECCcc---chHHHHHHHHHHHH-HCCCeEEEEcCC
Confidence 457899999963 33323322 3344 359999999999
No 66
>KOG2564|consensus
Probab=75.39 E-value=6.4 Score=29.10 Aligned_cols=49 Identities=18% Similarity=0.143 Sum_probs=31.8
Q ss_pred ceeeCCCCCCCCccEEEEEeCCCccCCCCCCCChHHHhhCCCeEEEEeCCC
Q psy4014 6 RDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYDGRILASYADFVVITLNYR 56 (85)
Q Consensus 6 ~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~~~~la~~~~~ivVsv~YR 56 (85)
|+|... .+...-|++++.||||...-+... -.+.+.....+.++++|-|
T Consensus 63 n~Y~t~-~~~t~gpil~l~HG~G~S~LSfA~-~a~el~s~~~~r~~a~DlR 111 (343)
T KOG2564|consen 63 NVYLTL-PSATEGPILLLLHGGGSSALSFAI-FASELKSKIRCRCLALDLR 111 (343)
T ss_pred EEEEec-CCCCCccEEEEeecCcccchhHHH-HHHHHHhhcceeEEEeecc
Confidence 444433 224466999999999865544321 1366666677888888888
No 67
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=75.09 E-value=2.5 Score=28.61 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=22.7
Q ss_pred ccEEEEEeCCCccCCCCCC-CC-hHHHhhCCCeEEEEeCCC
Q psy4014 18 YPVLIYIHGESFEWNSGNP-YD-GRILASYADFVVITLNYR 56 (85)
Q Consensus 18 ~PVvv~iHGGg~~~g~~~~-~~-~~~la~~~~~ivVsv~YR 56 (85)
.|.+|++||.+........ +. ...++. .++-|+++|+|
T Consensus 30 ~~~ivllHG~~~~~~~~~~~~~~~~~l~~-~~~~vi~~D~~ 69 (282)
T TIGR03343 30 GEAVIMLHGGGPGAGGWSNYYRNIGPFVD-AGYRVILKDSP 69 (282)
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHHHh-CCCEEEEECCC
Confidence 4679999997532221111 11 123333 48999999998
No 68
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=74.54 E-value=4.9 Score=32.98 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=24.6
Q ss_pred CCccEEEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCCC
Q psy4014 16 QKYPVLIYIHGESFEWNSGNPYD--GRILASYADFVVITLNYR 56 (85)
Q Consensus 16 ~~~PVvv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~YR 56 (85)
...|++|++||=+ ++...+. ...++. .++.|+.+|+|
T Consensus 447 ~g~P~VVllHG~~---g~~~~~~~lA~~La~-~Gy~VIaiDlp 485 (792)
T TIGR03502 447 DGWPVVIYQHGIT---GAKENALAFAGTLAA-AGVATIAIDHP 485 (792)
T ss_pred CCCcEEEEeCCCC---CCHHHHHHHHHHHHh-CCcEEEEeCCC
Confidence 3468999999965 3333332 244443 58999999986
No 69
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=74.07 E-value=5.3 Score=27.93 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=21.1
Q ss_pred ccEEEEEeCCCccCCCCCCCChHHHhhCCCeEEEEeCCC
Q psy4014 18 YPVLIYIHGESFEWNSGNPYDGRILASYADFVVITLNYR 56 (85)
Q Consensus 18 ~PVvv~iHGGg~~~g~~~~~~~~~la~~~~~ivVsv~YR 56 (85)
-+.+|++||+.... ............++-|+.+|+|
T Consensus 27 ~~~lvllHG~~~~~---~~~~~~~~~~~~~~~vi~~D~~ 62 (306)
T TIGR01249 27 GKPVVFLHGGPGSG---TDPGCRRFFDPETYRIVLFDQR 62 (306)
T ss_pred CCEEEEECCCCCCC---CCHHHHhccCccCCEEEEECCC
Confidence 35679999974322 1111222222347889999999
No 70
>PRK03204 haloalkane dehalogenase; Provisional
Probab=73.37 E-value=3.1 Score=28.92 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=21.5
Q ss_pred ccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 18 YPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 18 ~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
.|.+|++||.+ .+...+.. ..+. .++-|+.+|+|
T Consensus 34 ~~~iv~lHG~~---~~~~~~~~~~~~l~--~~~~vi~~D~~ 69 (286)
T PRK03204 34 GPPILLCHGNP---TWSFLYRDIIVALR--DRFRCVAPDYL 69 (286)
T ss_pred CCEEEEECCCC---ccHHHHHHHHHHHh--CCcEEEEECCC
Confidence 47899999975 22222222 2232 36899999999
No 71
>PRK06489 hypothetical protein; Provisional
Probab=73.11 E-value=5.1 Score=28.83 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=22.3
Q ss_pred ccEEEEEeCCCccCCCCCCCC--h--HHH------hhCCCeEEEEeCCC
Q psy4014 18 YPVLIYIHGESFEWNSGNPYD--G--RIL------ASYADFVVITLNYR 56 (85)
Q Consensus 18 ~PVvv~iHGGg~~~g~~~~~~--~--~~l------a~~~~~ivVsv~YR 56 (85)
.|.+|++||.+. +...+. . ..+ ....++-|+++|+|
T Consensus 69 gpplvllHG~~~---~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~ 114 (360)
T PRK06489 69 DNAVLVLHGTGG---SGKSFLSPTFAGELFGPGQPLDASKYFIILPDGI 114 (360)
T ss_pred CCeEEEeCCCCC---chhhhccchhHHHhcCCCCcccccCCEEEEeCCC
Confidence 578999999873 222221 1 111 11247899999999
No 72
>KOG4391|consensus
Probab=72.43 E-value=5.8 Score=28.45 Aligned_cols=41 Identities=22% Similarity=0.404 Sum_probs=29.0
Q ss_pred CCCccEEEEEeCCCccCCCCCCCChHHHhhCCCeEEEEeCCC
Q psy4014 15 LQKYPVLIYIHGESFEWNSGNPYDGRILASYADFVVITLNYR 56 (85)
Q Consensus 15 ~~~~PVvv~iHGGg~~~g~~~~~~~~~la~~~~~ivVsv~YR 56 (85)
++.+|.++|+|+-+--+|..-..- +-+-...++.|..++||
T Consensus 75 E~S~pTlLyfh~NAGNmGhr~~i~-~~fy~~l~mnv~ivsYR 115 (300)
T KOG4391|consen 75 ESSRPTLLYFHANAGNMGHRLPIA-RVFYVNLKMNVLIVSYR 115 (300)
T ss_pred cCCCceEEEEccCCCcccchhhHH-HHHHHHcCceEEEEEee
Confidence 457899999999986666543222 23333458889999999
No 73
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=71.35 E-value=4.7 Score=29.17 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=22.8
Q ss_pred ccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 18 YPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 18 ~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
.|.+|++||.+ ++...+.. ..++ .++-|+.+|+|
T Consensus 88 gp~lvllHG~~---~~~~~w~~~~~~L~--~~~~via~Dl~ 123 (360)
T PLN02679 88 GPPVLLVHGFG---ASIPHWRRNIGVLA--KNYTVYAIDLL 123 (360)
T ss_pred CCeEEEECCCC---CCHHHHHHHHHHHh--cCCEEEEECCC
Confidence 37899999976 33333333 3333 37999999999
No 74
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=71.09 E-value=2.5 Score=28.03 Aligned_cols=47 Identities=19% Similarity=0.114 Sum_probs=27.2
Q ss_pred eeeCCCCCCCCccEEEEEeCCCccCCCCCCC--ChHHHhhCCCeEEEEeCCCCCC
Q psy4014 7 DFGKVGQPLQKYPVLIYIHGESFEWNSGNPY--DGRILASYADFVVITLNYRLGV 59 (85)
Q Consensus 7 i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~--~~~~la~~~~~ivVsv~YRlap 59 (85)
+..|... .+.|+||.+|+-. |-.... ....++.+ |+.|+.+|+--+.
T Consensus 5 ~~~P~~~--~~~~~Vvv~~d~~---G~~~~~~~~ad~lA~~-Gy~v~~pD~f~~~ 53 (218)
T PF01738_consen 5 VARPEGG--GPRPAVVVIHDIF---GLNPNIRDLADRLAEE-GYVVLAPDLFGGR 53 (218)
T ss_dssp EEEETTS--SSEEEEEEE-BTT---BS-HHHHHHHHHHHHT-T-EEEEE-CCCCT
T ss_pred EEeCCCC--CCCCEEEEEcCCC---CCchHHHHHHHHHHhc-CCCEEecccccCC
Confidence 4567643 6789999999864 322211 13666664 9999999975443
No 75
>PLN02965 Probable pheophorbidase
Probab=70.19 E-value=7.2 Score=26.33 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=22.2
Q ss_pred EEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 20 VLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 20 Vvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
.+|++||.+ ++...+.. ..|. ..++-|+++|+|
T Consensus 5 ~vvllHG~~---~~~~~w~~~~~~L~-~~~~~via~Dl~ 39 (255)
T PLN02965 5 HFVFVHGAS---HGAWCWYKLATLLD-AAGFKSTCVDLT 39 (255)
T ss_pred EEEEECCCC---CCcCcHHHHHHHHh-hCCceEEEecCC
Confidence 389999987 33333433 3343 348999999998
No 76
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.57 E-value=7.5 Score=28.55 Aligned_cols=50 Identities=18% Similarity=0.041 Sum_probs=32.2
Q ss_pred CCCceeeCCCCCCCCccEEEEEeCCCccCCCCCCCChHHHhhCCCeEEEEeCCC
Q psy4014 3 QYPRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYDGRILASYADFVVITLNYR 56 (85)
Q Consensus 3 ~~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~~~~la~~~~~ivVsv~YR 56 (85)
|+.-+..|.. .+.++|.+|.+||=+...| .+++.-.++. +|+.++..+.|
T Consensus 69 I~gwlvlP~~-~~~~~P~vV~fhGY~g~~g--~~~~~l~wa~-~Gyavf~MdvR 118 (321)
T COG3458 69 IKGWLVLPRH-EKGKLPAVVQFHGYGGRGG--EWHDMLHWAV-AGYAVFVMDVR 118 (321)
T ss_pred EEEEEEeecc-cCCccceEEEEeeccCCCC--Cccccccccc-cceeEEEEecc
Confidence 4445556763 3478999999998553333 3344444554 48888888888
No 77
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=69.18 E-value=5.2 Score=27.29 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=21.5
Q ss_pred ccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 18 YPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 18 ~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
.|.||++||-+ ++...+.. ..+. .++-|+.+|+|
T Consensus 25 ~~plvllHG~~---~~~~~w~~~~~~L~--~~~~vi~~Dl~ 60 (276)
T TIGR02240 25 LTPLLIFNGIG---ANLELVFPFIEALD--PDLEVIAFDVP 60 (276)
T ss_pred CCcEEEEeCCC---cchHHHHHHHHHhc--cCceEEEECCC
Confidence 36789999954 33333332 3333 36889999998
No 78
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=68.92 E-value=7.8 Score=27.34 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=22.2
Q ss_pred CccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 17 KYPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 17 ~~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
..|.+|++||.+ ++...+.. ..+.. ++-|+.+++|
T Consensus 130 ~~~~vl~~HG~~---~~~~~~~~~~~~l~~--~~~v~~~d~~ 166 (371)
T PRK14875 130 DGTPVVLIHGFG---GDLNNWLFNHAALAA--GRPVIALDLP 166 (371)
T ss_pred CCCeEEEECCCC---CccchHHHHHHHHhc--CCEEEEEcCC
Confidence 357899999754 33333322 33433 4889999988
No 79
>PRK05855 short chain dehydrogenase; Validated
Probab=68.77 E-value=5.6 Score=29.79 Aligned_cols=35 Identities=26% Similarity=0.589 Sum_probs=24.0
Q ss_pred CccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 17 KYPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 17 ~~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
..|.+|++||.+ ++...+.. ..+ ..++-|+.+|+|
T Consensus 24 ~~~~ivllHG~~---~~~~~w~~~~~~L--~~~~~Vi~~D~~ 60 (582)
T PRK05855 24 DRPTVVLVHGYP---DNHEVWDGVAPLL--ADRFRVVAYDVR 60 (582)
T ss_pred CCCeEEEEcCCC---chHHHHHHHHHHh--hcceEEEEecCC
Confidence 368999999986 33333332 334 348999999999
No 80
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=68.52 E-value=13 Score=26.67 Aligned_cols=17 Identities=18% Similarity=0.133 Sum_probs=12.9
Q ss_pred HHHhhCCCeEEEEeCCCC
Q psy4014 40 RILASYADFVVITLNYRL 57 (85)
Q Consensus 40 ~~la~~~~~ivVsv~YRl 57 (85)
..++. .|+.|+.+|+|-
T Consensus 88 ~~L~~-~G~~V~~~D~~g 104 (350)
T TIGR01836 88 RGLLE-RGQDVYLIDWGY 104 (350)
T ss_pred HHHHH-CCCeEEEEeCCC
Confidence 44544 599999999984
No 81
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=67.75 E-value=16 Score=27.33 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=32.7
Q ss_pred CCceeeCCCCCCCCccEEEEEeCCC---ccCCCCCCCC--hHHHhhCCCeEEEEeC
Q psy4014 4 YPRDFGKVGQPLQKYPVLIYIHGES---FEWNSGNPYD--GRILASYADFVVITLN 54 (85)
Q Consensus 4 ~~~i~~p~~~~~~~~PVvv~iHGGg---~~~g~~~~~~--~~~la~~~~~ivVsv~ 54 (85)
++.|+.|.. ......++++|-||. +.....+... ...+|...+.+++.+.
T Consensus 51 ~l~I~vP~~-~~~~~~all~i~gG~~~~~~~~~~~~~~~~~~~~A~~t~siv~~l~ 105 (367)
T PF10142_consen 51 WLTIYVPKN-DKNPDTALLFITGGSNRNWPGPPPDFDDELLQMIARATGSIVAILY 105 (367)
T ss_pred EEEEEECCC-CCCCceEEEEEECCcccCCCCCCCcchHHHHHHHHHhcCCEEEEeC
Confidence 467888975 345668899999998 2222222111 2777778888888773
No 82
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=67.57 E-value=6.1 Score=27.17 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=22.2
Q ss_pred ccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 18 YPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 18 ~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
-|++|++||.+ ++...+.. ..++. .+-|+.+|.|
T Consensus 29 ~~~vlllHG~~---~~~~~w~~~~~~L~~--~~~vi~~Dlp 64 (294)
T PLN02824 29 GPALVLVHGFG---GNADHWRKNTPVLAK--SHRVYAIDLL 64 (294)
T ss_pred CCeEEEECCCC---CChhHHHHHHHHHHh--CCeEEEEcCC
Confidence 37899999975 33333332 44544 4588889888
No 83
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=65.06 E-value=6 Score=26.38 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=11.2
Q ss_pred CceeeCCCCCCCCccEEEEEeCCC
Q psy4014 5 PRDFGKVGQPLQKYPVLIYIHGES 28 (85)
Q Consensus 5 ~~i~~p~~~~~~~~PVvv~iHGGg 28 (85)
+.|..|. ....|++||+||-|
T Consensus 4 ~~i~~~~---~~~~~lvi~LHG~G 24 (216)
T PF02230_consen 4 PRIIEPK---GKAKPLVILLHGYG 24 (216)
T ss_dssp -EEE--S---ST-SEEEEEE--TT
T ss_pred CEEeCCC---CCCceEEEEECCCC
Confidence 4455554 45789999999975
No 84
>PLN02872 triacylglycerol lipase
Probab=64.78 E-value=7.2 Score=29.16 Aligned_cols=41 Identities=29% Similarity=0.250 Sum_probs=25.8
Q ss_pred CccEEEEEeCCCccCCCCC---CCC--hHHHhhCCCeEEEEeCCCCC
Q psy4014 17 KYPVLIYIHGESFEWNSGN---PYD--GRILASYADFVVITLNYRLG 58 (85)
Q Consensus 17 ~~PVvv~iHGGg~~~g~~~---~~~--~~~la~~~~~ivVsv~YRla 58 (85)
..|+++++||.+....... ... ...++. .|+-|+.+|.|=.
T Consensus 73 ~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~-~GydV~l~n~RG~ 118 (395)
T PLN02872 73 RGPPVLLQHGLFMAGDAWFLNSPEQSLGFILAD-HGFDVWVGNVRGT 118 (395)
T ss_pred CCCeEEEeCcccccccceeecCcccchHHHHHh-CCCCccccccccc
Confidence 4688999999764333221 111 123444 6999999999954
No 85
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=61.72 E-value=9.5 Score=28.34 Aligned_cols=35 Identities=20% Similarity=0.469 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 17 KYPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 17 ~~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
..|++|++||.+. +...+.. ..++ .++-|+++|+|
T Consensus 126 ~~~~ivllHG~~~---~~~~w~~~~~~L~--~~~~Via~Dlp 162 (383)
T PLN03084 126 NNPPVLLIHGFPS---QAYSYRKVLPVLS--KNYHAIAFDWL 162 (383)
T ss_pred CCCeEEEECCCCC---CHHHHHHHHHHHh--cCCEEEEECCC
Confidence 3588999999762 2222332 3333 37899999988
No 86
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=61.54 E-value=9.3 Score=27.27 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=28.0
Q ss_pred EEEEEeCCCccCCCCC-CCCh--HHHhhCCCeEEEEeCCCCC
Q psy4014 20 VLIYIHGESFEWNSGN-PYDG--RILASYADFVVITLNYRLG 58 (85)
Q Consensus 20 Vvv~iHGGg~~~g~~~-~~~~--~~la~~~~~ivVsv~YRla 58 (85)
.+|++=||+|+...+. .|.. ..++. .|++|++.-|..+
T Consensus 18 gvihFiGGaf~ga~P~itYr~lLe~La~-~Gy~ViAtPy~~t 58 (250)
T PF07082_consen 18 GVIHFIGGAFVGAAPQITYRYLLERLAD-RGYAVIATPYVVT 58 (250)
T ss_pred EEEEEcCcceeccCcHHHHHHHHHHHHh-CCcEEEEEecCCC
Confidence 5778889998877665 3443 66776 4999999999653
No 87
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=61.44 E-value=5.9 Score=28.34 Aligned_cols=46 Identities=24% Similarity=0.355 Sum_probs=28.5
Q ss_pred CCceeeCCCCCCCCccEEEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCCC
Q psy4014 4 YPRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYD--GRILASYADFVVITLNYR 56 (85)
Q Consensus 4 ~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~YR 56 (85)
+...|.+. .....+||.+||.+ .....|. ...++. .|+.|++.|.|
T Consensus 23 ~~~~~~~~---~~~~g~Vvl~HG~~---Eh~~ry~~la~~l~~-~G~~V~~~D~R 70 (298)
T COG2267 23 RYRTWAAP---EPPKGVVVLVHGLG---EHSGRYEELADDLAA-RGFDVYALDLR 70 (298)
T ss_pred EEEeecCC---CCCCcEEEEecCch---HHHHHHHHHHHHHHh-CCCEEEEecCC
Confidence 34445543 22338999999986 3222222 234444 69999999999
No 88
>PRK07581 hypothetical protein; Validated
Probab=58.28 E-value=15 Score=25.94 Aligned_cols=39 Identities=18% Similarity=0.090 Sum_probs=22.4
Q ss_pred CccEEEEEeCCCccCCCCCCC-Ch-HHHhhCCCeEEEEeCCC
Q psy4014 17 KYPVLIYIHGESFEWNSGNPY-DG-RILASYADFVVITLNYR 56 (85)
Q Consensus 17 ~~PVvv~iHGGg~~~g~~~~~-~~-~~la~~~~~ivVsv~YR 56 (85)
..|++++.||++|........ .. ..+. ..++-|+++|.|
T Consensus 40 ~~~~vll~~~~~~~~~~~~~~~~~~~~l~-~~~~~vi~~D~~ 80 (339)
T PRK07581 40 KDNAILYPTWYSGTHQDNEWLIGPGRALD-PEKYFIIIPNMF 80 (339)
T ss_pred CCCEEEEeCCCCCCcccchhhccCCCccC-cCceEEEEecCC
Confidence 347777777776543322110 11 2333 347999999998
No 89
>PRK13604 luxD acyl transferase; Provisional
Probab=57.91 E-value=17 Score=26.60 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=25.1
Q ss_pred CCCccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCCC
Q psy4014 15 LQKYPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYRL 57 (85)
Q Consensus 15 ~~~~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YRl 57 (85)
..+.+++|+.||=+- ....+.. +.|+ +.|+.|+.+|+|-
T Consensus 34 ~~~~~~vIi~HGf~~---~~~~~~~~A~~La-~~G~~vLrfD~rg 74 (307)
T PRK13604 34 PKKNNTILIASGFAR---RMDHFAGLAEYLS-SNGFHVIRYDSLH 74 (307)
T ss_pred CCCCCEEEEeCCCCC---ChHHHHHHHHHHH-HCCCEEEEecCCC
Confidence 456788999988552 2222222 4444 5699999999763
No 90
>PRK11460 putative hydrolase; Provisional
Probab=55.28 E-value=12 Score=25.46 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=21.5
Q ss_pred CCCccEEEEEeCCCccCCCCCCCCh--HHHhhC-CCeEEEEeC
Q psy4014 15 LQKYPVLIYIHGESFEWNSGNPYDG--RILASY-ADFVVITLN 54 (85)
Q Consensus 15 ~~~~PVvv~iHGGg~~~g~~~~~~~--~~la~~-~~~ivVsv~ 54 (85)
....|++|++||-| ++...+.. ..+... .++.+++++
T Consensus 13 ~~~~~~vIlLHG~G---~~~~~~~~l~~~l~~~~~~~~~i~~~ 52 (232)
T PRK11460 13 KPAQQLLLLFHGVG---DNPVAMGEIGSWFAPAFPDALVVSVG 52 (232)
T ss_pred CCCCcEEEEEeCCC---CChHHHHHHHHHHHHHCCCCEEECCC
Confidence 34568999999987 44443332 444432 245566555
No 91
>PRK03592 haloalkane dehalogenase; Provisional
Probab=55.16 E-value=12 Score=25.63 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=22.0
Q ss_pred ccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 18 YPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 18 ~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
-|.+|++||.+ ++...+.. ..++.. + -|+++|.|
T Consensus 27 g~~vvllHG~~---~~~~~w~~~~~~L~~~-~-~via~D~~ 62 (295)
T PRK03592 27 GDPIVFLHGNP---TSSYLWRNIIPHLAGL-G-RCLAPDLI 62 (295)
T ss_pred CCEEEEECCCC---CCHHHHHHHHHHHhhC-C-EEEEEcCC
Confidence 37899999975 33333332 444443 3 89999988
No 92
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=54.75 E-value=15 Score=26.87 Aligned_cols=50 Identities=24% Similarity=0.446 Sum_probs=30.5
Q ss_pred eeeCCC-CCCCCccEEEEEeCCCccCCCCCC-CChHHHhhC--CCeEEEEeCCC
Q psy4014 7 DFGKVG-QPLQKYPVLIYIHGESFEWNSGNP-YDGRILASY--ADFVVITLNYR 56 (85)
Q Consensus 7 i~~p~~-~~~~~~PVvv~iHGGg~~~g~~~~-~~~~~la~~--~~~ivVsv~YR 56 (85)
+|.|.+ .+..++||++.+||--|..-.+-. .-.+.++.. ..+++|-++|-
T Consensus 86 v~lppgy~~~~k~pvl~~~DG~~~~~~g~i~~~~dsli~~g~i~pai~vgid~~ 139 (299)
T COG2382 86 VYLPPGYNPLEKYPVLYLQDGQDWFRSGRIPRILDSLIAAGEIPPAILVGIDYI 139 (299)
T ss_pred EEeCCCCCccccccEEEEeccHHHHhcCChHHHHHHHHHcCCCCCceEEecCCC
Confidence 455554 566789999999988876554321 111222221 57778877763
No 93
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=53.83 E-value=18 Score=28.65 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=32.4
Q ss_pred CCCceeeCCCCCCCCccEEEEEeCCCccCCC---CCCCCh----HHHhhCCCeEEEEeCCC
Q psy4014 3 QYPRDFGKVGQPLQKYPVLIYIHGESFEWNS---GNPYDG----RILASYADFVVITLNYR 56 (85)
Q Consensus 3 ~~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~---~~~~~~----~~la~~~~~ivVsv~YR 56 (85)
++.|||.|+. ..++||++-.+=.=+...+ ...+.. ..++. .|++||.+|-|
T Consensus 32 L~~dIy~Pa~--~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa-~GYavV~qDvR 89 (563)
T COG2936 32 LAADIYRPAG--AGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAA-QGYAVVNQDVR 89 (563)
T ss_pred EEEEEEccCC--CCCCceeEEeeccccccccccCcchhhcccccceeec-CceEEEEeccc
Confidence 5679999985 3789999988822222221 111111 24555 59999999999
No 94
>KOG3967|consensus
Probab=53.19 E-value=24 Score=25.28 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=13.5
Q ss_pred CCccEEEEEeCCCccCCC
Q psy4014 16 QKYPVLIYIHGESFEWNS 33 (85)
Q Consensus 16 ~~~PVvv~iHGGg~~~g~ 33 (85)
+..-.||.|||.|.+...
T Consensus 99 ~~~kLlVLIHGSGvVrAG 116 (297)
T KOG3967|consen 99 NPQKLLVLIHGSGVVRAG 116 (297)
T ss_pred CccceEEEEecCceEecc
Confidence 344589999999987543
No 95
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=53.14 E-value=20 Score=26.25 Aligned_cols=42 Identities=24% Similarity=0.474 Sum_probs=22.3
Q ss_pred CCccEEEEEeCCCccCCC-CCCCCh---HHHhhC--CCeEEEEeCCCCCC
Q psy4014 16 QKYPVLIYIHGESFEWNS-GNPYDG---RILASY--ADFVVITLNYRLGV 59 (85)
Q Consensus 16 ~~~PVvv~iHGGg~~~g~-~~~~~~---~~la~~--~~~ivVsv~YRlap 59 (85)
..+|++|+||| |.... ...+.. ..+... .+.-|+.||+..+.
T Consensus 69 ~~~pt~iiiHG--w~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a 116 (331)
T PF00151_consen 69 PSKPTVIIIHG--WTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGA 116 (331)
T ss_dssp TTSEEEEEE----TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHH
T ss_pred CCCCeEEEEcC--cCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhc
Confidence 46899999997 55444 222221 223333 58899999987543
No 96
>PLN02578 hydrolase
Probab=52.58 E-value=15 Score=26.33 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=20.8
Q ss_pred cEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 19 PVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 19 PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
|.+|++||-+ ++...+.. ..++ .++-|+.+|+|
T Consensus 87 ~~vvliHG~~---~~~~~w~~~~~~l~--~~~~v~~~D~~ 121 (354)
T PLN02578 87 LPIVLIHGFG---ASAFHWRYNIPELA--KKYKVYALDLL 121 (354)
T ss_pred CeEEEECCCC---CCHHHHHHHHHHHh--cCCEEEEECCC
Confidence 5578999864 23322222 3443 36899999999
No 97
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=49.09 E-value=21 Score=27.55 Aligned_cols=36 Identities=11% Similarity=0.233 Sum_probs=23.7
Q ss_pred ccEEEEEeCCCccCCCCCCCCh---HHHhh--CCCeEEEEeCCC
Q psy4014 18 YPVLIYIHGESFEWNSGNPYDG---RILAS--YADFVVITLNYR 56 (85)
Q Consensus 18 ~PVvv~iHGGg~~~g~~~~~~~---~~la~--~~~~ivVsv~YR 56 (85)
.|.||++||.+ ++...+.. ..++. ..++-|+.+|+|
T Consensus 201 k~~VVLlHG~~---~s~~~W~~~~~~~L~~~~~~~yrVia~Dl~ 241 (481)
T PLN03087 201 KEDVLFIHGFI---SSSAFWTETLFPNFSDAAKSTYRLFAVDLL 241 (481)
T ss_pred CCeEEEECCCC---ccHHHHHHHHHHHHHHHhhCCCEEEEECCC
Confidence 47899999996 33333332 22331 348899999998
No 98
>PF14041 Lipoprotein_21: LppP/LprE lipoprotein
Probab=48.49 E-value=9.8 Score=22.48 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=20.5
Q ss_pred cEEEEEeCCCccCCCCC-CCChHHHhhCCCeEEEEeCCC
Q psy4014 19 PVLIYIHGESFEWNSGN-PYDGRILASYADFVVITLNYR 56 (85)
Q Consensus 19 PVvv~iHGGg~~~g~~~-~~~~~~la~~~~~ivVsv~YR 56 (85)
--+++||.|.|+.-... .+....... .+---|++.||
T Consensus 26 ~~vl~Fh~G~fiGt~t~~p~~~~~v~~-~~~~~V~V~Y~ 63 (89)
T PF14041_consen 26 QQVLFFHDGEFIGTATPDPYGYIDVIR-STDDTVTVQYR 63 (89)
T ss_pred eEEEEEECCEEcccCCccccCceeEEe-eCCCEEEEEEE
Confidence 56778888888755443 443322222 23334566677
No 99
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=48.20 E-value=17 Score=27.70 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=24.1
Q ss_pred ccEEEEEeCCCccCCCCCC----CChHHHhhCCCeEEEEeCCCC
Q psy4014 18 YPVLIYIHGESFEWNSGNP----YDGRILASYADFVVITLNYRL 57 (85)
Q Consensus 18 ~PVvv~iHGGg~~~g~~~~----~~~~~la~~~~~ivVsv~YRl 57 (85)
..+|++|.|-| ++.+. +....+|.+-++++|+|+|--
T Consensus 35 kaIvfiI~GfG---~dan~~~~d~~r~~iA~~fnvv~I~V~YHC 75 (403)
T PF11144_consen 35 KAIVFIIPGFG---ADANSNYLDFMREYIAKKFNVVVISVNYHC 75 (403)
T ss_pred eEEEEEeCCcC---CCcchHHHHHHHHHHHHhCCEEEEEeeeeh
Confidence 34445554444 33332 335788888999999999973
No 100
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.45 E-value=41 Score=23.20 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=26.7
Q ss_pred eeeCCCCCCCCccEEEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCC
Q psy4014 7 DFGKVGQPLQKYPVLIYIHGESFEWNSGNPYD--GRILASYADFVVITLNY 55 (85)
Q Consensus 7 i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~Y 55 (85)
+..|... ...|+||.+|+=. |-..... .++++.+ |++++.++.
T Consensus 18 ~a~P~~~--~~~P~VIv~hei~---Gl~~~i~~~a~rlA~~-Gy~v~~Pdl 62 (236)
T COG0412 18 LARPAGA--GGFPGVIVLHEIF---GLNPHIRDVARRLAKA-GYVVLAPDL 62 (236)
T ss_pred EecCCcC--CCCCEEEEEeccc---CCchHHHHHHHHHHhC-CcEEEechh
Confidence 3455532 2339999999854 3333222 4777775 999888774
No 101
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=46.12 E-value=16 Score=26.38 Aligned_cols=15 Identities=13% Similarity=0.572 Sum_probs=10.4
Q ss_pred CCCCccEEEEEeCCC
Q psy4014 14 PLQKYPVLIYIHGES 28 (85)
Q Consensus 14 ~~~~~PVvv~iHGGg 28 (85)
.....|+++|+.||=
T Consensus 36 ~~~~~Pl~~wlnGGP 50 (415)
T PF00450_consen 36 DPEDDPLILWLNGGP 50 (415)
T ss_dssp GGCSS-EEEEEE-TT
T ss_pred CCCCccEEEEecCCc
Confidence 446789999999994
No 102
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=45.45 E-value=24 Score=23.10 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=12.5
Q ss_pred HHHhhCCCeEEEEeCCCCCC
Q psy4014 40 RILASYADFVVITLNYRLGV 59 (85)
Q Consensus 40 ~~la~~~~~ivVsv~YRlap 59 (85)
+.++ +.|++|+.+|||-+.
T Consensus 8 ~~la-~~Gy~v~~~~~rGs~ 26 (213)
T PF00326_consen 8 QLLA-SQGYAVLVPNYRGSG 26 (213)
T ss_dssp HHHH-TTT-EEEEEE-TTSS
T ss_pred HHHH-hCCEEEEEEcCCCCC
Confidence 3444 469999999999655
No 103
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=43.49 E-value=23 Score=27.05 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=12.1
Q ss_pred CCCCccEEEEEeCCC
Q psy4014 14 PLQKYPVLIYIHGES 28 (85)
Q Consensus 14 ~~~~~PVvv~iHGGg 28 (85)
.....|+++|++||=
T Consensus 73 ~~~~~Pl~lwlnGGP 87 (462)
T PTZ00472 73 GNPEAPVLLWMTGGP 87 (462)
T ss_pred CCCCCCEEEEECCCC
Confidence 345679999999994
No 104
>KOG1552|consensus
Probab=42.99 E-value=19 Score=25.83 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=29.8
Q ss_pred CccEEEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCCCCCCcccCCCC
Q psy4014 17 KYPVLIYIHGESFEWNSGNPYD--GRILASYADFVVITLNYRLGVLVDITLK 66 (85)
Q Consensus 17 ~~PVvv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~YRlap~Gfl~~~ 66 (85)
..++++|.||-+...| +.. -..+....++-+++.||| ||-.+.
T Consensus 59 ~~~~lly~hGNa~Dlg---q~~~~~~~l~~~ln~nv~~~DYS----GyG~S~ 103 (258)
T KOG1552|consen 59 AHPTLLYSHGNAADLG---QMVELFKELSIFLNCNVVSYDYS----GYGRSS 103 (258)
T ss_pred cceEEEEcCCcccchH---HHHHHHHHHhhcccceEEEEecc----cccccC
Confidence 4699999999977666 111 134444469999999999 654444
No 105
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=41.03 E-value=57 Score=23.36 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=12.2
Q ss_pred HHHhhCCCeEEEEeCCC
Q psy4014 40 RILASYADFVVITLNYR 56 (85)
Q Consensus 40 ~~la~~~~~ivVsv~YR 56 (85)
..|+. .|+.|+.+|.|
T Consensus 68 ~~l~~-~G~~V~~~D~r 83 (332)
T TIGR01607 68 ENFNK-NGYSVYGLDLQ 83 (332)
T ss_pred HHHHH-CCCcEEEeccc
Confidence 34444 59999999998
No 106
>PRK11071 esterase YqiA; Provisional
Probab=40.11 E-value=30 Score=22.78 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=21.3
Q ss_pred cEEEEEeCCCccCCCCCCCCh----HHHhh-CCCeEEEEeCCC
Q psy4014 19 PVLIYIHGESFEWNSGNPYDG----RILAS-YADFVVITLNYR 56 (85)
Q Consensus 19 PVvv~iHGGg~~~g~~~~~~~----~~la~-~~~~ivVsv~YR 56 (85)
|.+|++||-+ ++...+.. ..+.. ..++.++.++.|
T Consensus 2 p~illlHGf~---ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~ 41 (190)
T PRK11071 2 STLLYLHGFN---SSPRSAKATLLKNWLAQHHPDIEMIVPQLP 41 (190)
T ss_pred CeEEEECCCC---CCcchHHHHHHHHHHHHhCCCCeEEeCCCC
Confidence 6799999965 34443332 22322 236788888877
No 107
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=39.89 E-value=30 Score=30.64 Aligned_cols=35 Identities=14% Similarity=0.378 Sum_probs=23.0
Q ss_pred CccEEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCC
Q psy4014 17 KYPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 17 ~~PVvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YR 56 (85)
..|++|++||.+ ++...+.. ..+. .++-|+.+|+|
T Consensus 1370 ~~~~vVllHG~~---~s~~~w~~~~~~L~--~~~rVi~~Dl~ 1406 (1655)
T PLN02980 1370 EGSVVLFLHGFL---GTGEDWIPIMKAIS--GSARCISIDLP 1406 (1655)
T ss_pred CCCeEEEECCCC---CCHHHHHHHHHHHh--CCCEEEEEcCC
Confidence 458999999987 33333332 3333 35788889888
No 108
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=37.41 E-value=44 Score=24.05 Aligned_cols=52 Identities=23% Similarity=0.243 Sum_probs=29.6
Q ss_pred ceeeCCCCCCC-CccEEEEEeCCCccCCCCCCCChHHHhhCCCeEEEEeCCCCC
Q psy4014 6 RDFGKVGQPLQ-KYPVLIYIHGESFEWNSGNPYDGRILASYADFVVITLNYRLG 58 (85)
Q Consensus 6 ~i~~p~~~~~~-~~PVvv~iHGGg~~~g~~~~~~~~~la~~~~~ivVsv~YRla 58 (85)
.|.+|...++. +.|| ||+|.|.=+++.........++...-.+.|.+.|+..
T Consensus 26 ~i~~P~~~~~~~~YpV-lY~lDGn~vf~~~~~~~~~~~~~~~~~~iv~iGye~~ 78 (264)
T COG2819 26 FIATPKNYPKPGGYPV-LYMLDGNAVFNALTEIMLRILADLPPPVIVGIGYETI 78 (264)
T ss_pred EecCCCCCCCCCCCcE-EEEecchhhhchHHHHhhhhhhcCCCceEEEeccccc
Confidence 35567643222 3675 5666666666655544445555554556777777753
No 109
>KOG2182|consensus
Probab=36.77 E-value=1.3e+02 Score=23.86 Aligned_cols=43 Identities=21% Similarity=0.113 Sum_probs=31.7
Q ss_pred CCCccEEEEEeCCCccCCCCCCCC---hHHHhhCCCeEEEEeCCCC
Q psy4014 15 LQKYPVLIYIHGESFEWNSGNPYD---GRILASYADFVVITLNYRL 57 (85)
Q Consensus 15 ~~~~PVvv~iHGGg~~~g~~~~~~---~~~la~~~~~ivVsv~YRl 57 (85)
...-|+.++|-|.|=.......+. -..+|.+-|+.|+.+++|.
T Consensus 83 ~~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRF 128 (514)
T KOG2182|consen 83 KPGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRF 128 (514)
T ss_pred cCCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeec
Confidence 456699999988775554332232 3778888999999999995
No 110
>TIGR02806 clostrip clostripain. Clostripain is a cysteine protease characterized from Clostridium histolyticum, and also known from Clostridium perfringens. It is a heterodimer processed from a single precursor polypeptide, specific for Arg-|-Xaa peptide bonds. The older term alpha-clostripain refers to the most active, most reduced form, rather than to the product of one of several different genes. Clostripain belongs to the peptidase family C11, or clostripain family (see pfam03415).
Probab=35.89 E-value=28 Score=27.13 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=13.4
Q ss_pred CCccEEEEEeCCCccCC
Q psy4014 16 QKYPVLIYIHGESFEWN 32 (85)
Q Consensus 16 ~~~PVvv~iHGGg~~~g 32 (85)
...-.|+|-||+||.-.
T Consensus 113 d~Y~LIiwnHG~GW~p~ 129 (476)
T TIGR02806 113 DKYMLIMANHGGGAKDD 129 (476)
T ss_pred cceeEEEEeCCCCCcCC
Confidence 34678899999999843
No 111
>KOG2237|consensus
Probab=35.62 E-value=54 Score=26.81 Aligned_cols=44 Identities=20% Similarity=0.066 Sum_probs=31.3
Q ss_pred CCCccEEEEEeCCCccCCCCCCCChHHHhhCCCeEEEEeCCCCC
Q psy4014 15 LQKYPVLIYIHGESFEWNSGNPYDGRILASYADFVVITLNYRLG 58 (85)
Q Consensus 15 ~~~~PVvv~iHGGg~~~g~~~~~~~~~la~~~~~ivVsv~YRla 58 (85)
....|.++|-|||.-+.-.+..-..+......|++++-.|-|=+
T Consensus 467 dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGG 510 (712)
T KOG2237|consen 467 DGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGG 510 (712)
T ss_pred cCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccC
Confidence 34689999999998666666543343333346999999998954
No 112
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=35.22 E-value=40 Score=18.72 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=7.7
Q ss_pred CCCCccEEEEEeCCC
Q psy4014 14 PLQKYPVLIYIHGES 28 (85)
Q Consensus 14 ~~~~~PVvv~iHGGg 28 (85)
....+|+++..||=.
T Consensus 39 ~~~~k~pVll~HGL~ 53 (63)
T PF04083_consen 39 QNKKKPPVLLQHGLL 53 (63)
T ss_dssp TTTT--EEEEE--TT
T ss_pred cCCCCCcEEEECCcc
Confidence 455689999999853
No 113
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=34.91 E-value=76 Score=22.16 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=31.9
Q ss_pred CCCccEEEEEeCCCccCCCCCC---CChHHHhhCCCeEEEEeCCCC
Q psy4014 15 LQKYPVLIYIHGESFEWNSGNP---YDGRILASYADFVVITLNYRL 57 (85)
Q Consensus 15 ~~~~PVvv~iHGGg~~~g~~~~---~~~~~la~~~~~ivVsv~YRl 57 (85)
...+||.+..|---...|+.+. +.-.....+.|+.++.+|||-
T Consensus 25 ~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRg 70 (210)
T COG2945 25 TPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRG 70 (210)
T ss_pred CCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccc
Confidence 4678999999988887787753 222334445699999999995
No 114
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A.
Probab=34.64 E-value=36 Score=19.87 Aligned_cols=26 Identities=8% Similarity=0.006 Sum_probs=11.9
Q ss_pred CCCceeeCCCCCCCCccEEEEEeCCC
Q psy4014 3 QYPRDFGKVGQPLQKYPVLIYIHGES 28 (85)
Q Consensus 3 ~~~~i~~p~~~~~~~~PVvv~iHGGg 28 (85)
+=+|.|.|--+..-.+|.|+|--+|+
T Consensus 12 ~d~NtW~P~YStEL~kPAMI~cs~~~ 37 (78)
T PF13341_consen 12 VDVNTWVPYYSTELNKPAMIFCSRGG 37 (78)
T ss_dssp --TTT----STT-SSS--EEEE-STT
T ss_pred cCCcccccccccccCCceEEEEeCCC
Confidence 34677888766666789999987764
No 115
>COG0627 Predicted esterase [General function prediction only]
Probab=34.37 E-value=75 Score=23.23 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=26.2
Q ss_pred CCCccEEEEEeCCCccCCCCCC--CC-hHHHhhCCCeEEEEeCC
Q psy4014 15 LQKYPVLIYIHGESFEWNSGNP--YD-GRILASYADFVVITLNY 55 (85)
Q Consensus 15 ~~~~PVvv~iHGGg~~~g~~~~--~~-~~~la~~~~~ivVsv~Y 55 (85)
+.+.||+++.||-.-.- ... .+ -+..+++.++++++.+-
T Consensus 51 ~~~ipV~~~l~G~t~~~--~~~~~~~g~~~~a~~~g~~~~~p~t 92 (316)
T COG0627 51 GRDIPVLYLLSGLTCNE--PNVYLLDGLRRQADESGWAVVTPDT 92 (316)
T ss_pred CCCCCEEEEeCCCCCCC--CceEeccchhhhhhhcCeEEecCCC
Confidence 56789999998865221 222 22 37778888999998743
No 116
>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine []. GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine []. The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology []. ; GO: 0004519 endonuclease activity, 0006298 mismatch repair; PDB: 1ODG_A 1VSR_A 1CW0_A.
Probab=33.96 E-value=51 Score=19.29 Aligned_cols=14 Identities=21% Similarity=0.536 Sum_probs=10.1
Q ss_pred ccEEEEEeCCCccC
Q psy4014 18 YPVLIYIHGESFEW 31 (85)
Q Consensus 18 ~PVvv~iHGGg~~~ 31 (85)
.-+.||+||=.|-.
T Consensus 56 ~k~aIFVdGCFWHg 69 (75)
T PF03852_consen 56 YKIAIFVDGCFWHG 69 (75)
T ss_dssp GTEEEEEE-TTTTT
T ss_pred CCEEEEEecceeCC
Confidence 46889999988753
No 117
>COG1647 Esterase/lipase [General function prediction only]
Probab=33.61 E-value=37 Score=24.16 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=23.1
Q ss_pred cEEEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCCC
Q psy4014 19 PVLIYIHGESFEWNSGNPYD--GRILASYADFVVITLNYR 56 (85)
Q Consensus 19 PVvv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~YR 56 (85)
..++++||= .|++.... .+.+. +.|+.|-.++|+
T Consensus 16 ~AVLllHGF---TGt~~Dvr~Lgr~L~-e~GyTv~aP~yp 51 (243)
T COG1647 16 RAVLLLHGF---TGTPRDVRMLGRYLN-ENGYTVYAPRYP 51 (243)
T ss_pred EEEEEEecc---CCCcHHHHHHHHHHH-HCCceEecCCCC
Confidence 678899973 35544322 34444 459999999998
No 118
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=33.60 E-value=32 Score=23.67 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=11.4
Q ss_pred CCCccEEEEEeCCCc
Q psy4014 15 LQKYPVLIYIHGESF 29 (85)
Q Consensus 15 ~~~~PVvv~iHGGg~ 29 (85)
.....++||+||=..
T Consensus 15 ~~~~~vlvfVHGyn~ 29 (233)
T PF05990_consen 15 SPDKEVLVFVHGYNN 29 (233)
T ss_pred CCCCeEEEEEeCCCC
Confidence 346789999998653
No 119
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=33.20 E-value=25 Score=20.05 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=18.1
Q ss_pred CccEEEEEeCCCccCCCCCCCChHHHhhCCCeEEE
Q psy4014 17 KYPVLIYIHGESFEWNSGNPYDGRILASYADFVVI 51 (85)
Q Consensus 17 ~~PVvv~iHGGg~~~g~~~~~~~~~la~~~~~ivV 51 (85)
..|.|+.+|||.-. ....-....+.+.++.++
T Consensus 30 ~~~~~~lvhGga~~---GaD~iA~~wA~~~gv~~~ 61 (71)
T PF10686_consen 30 RHPDMVLVHGGAPK---GADRIAARWARERGVPVI 61 (71)
T ss_pred hCCCEEEEECCCCC---CHHHHHHHHHHHCCCeeE
Confidence 45889999998621 111113555555566554
No 120
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=32.12 E-value=1.5e+02 Score=21.78 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=30.6
Q ss_pred eeeCCCCCCCCccEEEEEeCCCccCCCCCCCC-hHHHhhCCCeEEEEeCCC
Q psy4014 7 DFGKVGQPLQKYPVLIYIHGESFEWNSGNPYD-GRILASYADFVVITLNYR 56 (85)
Q Consensus 7 i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~-~~~la~~~~~ivVsv~YR 56 (85)
+|+....+++.+..+|=+||.- ||-..+. -+....+.|+-++.+||-
T Consensus 24 ~y~D~~~~gs~~gTVv~~hGsP---GSH~DFkYi~~~l~~~~iR~I~iN~P 71 (297)
T PF06342_consen 24 VYEDSLPSGSPLGTVVAFHGSP---GSHNDFKYIRPPLDEAGIRFIGINYP 71 (297)
T ss_pred EEEecCCCCCCceeEEEecCCC---CCccchhhhhhHHHHcCeEEEEeCCC
Confidence 4565555566677899999863 4433322 144444569999999996
No 121
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=31.99 E-value=55 Score=21.52 Aligned_cols=15 Identities=27% Similarity=0.642 Sum_probs=11.3
Q ss_pred ccEEEEEeCCCccCC
Q psy4014 18 YPVLIYIHGESFEWN 32 (85)
Q Consensus 18 ~PVvv~iHGGg~~~g 32 (85)
.-++||+||=-|-.-
T Consensus 57 y~~viFvHGCFWh~H 71 (150)
T COG3727 57 YRCVIFVHGCFWHGH 71 (150)
T ss_pred ceEEEEEeeeeccCC
Confidence 467899999877543
No 122
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=31.80 E-value=56 Score=20.63 Aligned_cols=14 Identities=36% Similarity=0.804 Sum_probs=11.1
Q ss_pred CccEEEEEeCCCcc
Q psy4014 17 KYPVLIYIHGESFE 30 (85)
Q Consensus 17 ~~PVvv~iHGGg~~ 30 (85)
..-++||+||..|-
T Consensus 55 ~~klaIfVDGcfWH 68 (117)
T TIGR00632 55 EYRCVIFIHGCFWH 68 (117)
T ss_pred CCCEEEEEcccccc
Confidence 45789999998766
No 123
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=31.68 E-value=49 Score=20.47 Aligned_cols=38 Identities=26% Similarity=0.328 Sum_probs=21.8
Q ss_pred ccEEEEEeCCCccCCCCCCCChHHHhhCC-CeEEEEeCCC
Q psy4014 18 YPVLIYIHGESFEWNSGNPYDGRILASYA-DFVVITLNYR 56 (85)
Q Consensus 18 ~PVvv~iHGGg~~~g~~~~~~~~~la~~~-~~ivVsv~YR 56 (85)
.|.++++||.......... ....+.... .+-++.+|.|
T Consensus 21 ~~~i~~~hg~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~ 59 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRP-VFKVLPALAARYRVIAPDLR 59 (282)
T ss_pred CCeEEEeCCCCCchhhhHH-HHHHhhccccceEEEEeccc
Confidence 5589999999844333222 011222221 2788888888
No 124
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=31.01 E-value=71 Score=24.56 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCccCCCCCCCCh---HHHh-hCCCeEEEEeCCC
Q psy4014 17 KYPVLIYIHGESFEWNSGNPYDG---RILA-SYADFVVITLNYR 56 (85)
Q Consensus 17 ~~PVvv~iHGGg~~~g~~~~~~~---~~la-~~~~~ivVsv~YR 56 (85)
..|.+|+|||-+-. +....+.. ..+. .+.++-|+++|++
T Consensus 40 ~~ptvIlIHG~~~s-~~~~~w~~~l~~al~~~~~d~nVI~VDw~ 82 (442)
T TIGR03230 40 ETKTFIVIHGWTVT-GMFESWVPKLVAALYEREPSANVIVVDWL 82 (442)
T ss_pred CCCeEEEECCCCcC-CcchhhHHHHHHHHHhccCCCEEEEEECC
Confidence 57999999997532 22222222 2222 2346888999987
No 125
>KOG1838|consensus
Probab=30.71 E-value=59 Score=24.90 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=27.7
Q ss_pred CCccEEEEEeCCCccCCCCCCCC--hHHHhhCCCeEEEEeCCC
Q psy4014 16 QKYPVLIYIHGESFEWNSGNPYD--GRILASYADFVVITLNYR 56 (85)
Q Consensus 16 ~~~PVvv~iHGGg~~~g~~~~~~--~~~la~~~~~ivVsv~YR 56 (85)
...|.+|++||=. .|+.+.|- -...+.+.|+-+|.+|.|
T Consensus 123 ~~~P~vvilpGlt--g~S~~~YVr~lv~~a~~~G~r~VVfN~R 163 (409)
T KOG1838|consen 123 GTDPIVVILPGLT--GGSHESYVRHLVHEAQRKGYRVVVFNHR 163 (409)
T ss_pred CCCcEEEEecCCC--CCChhHHHHHHHHHHHhCCcEEEEECCC
Confidence 4579999999965 23333332 245566679999999999
No 126
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=28.22 E-value=57 Score=24.42 Aligned_cols=39 Identities=28% Similarity=0.549 Sum_probs=26.1
Q ss_pred CCCccEEEEEeCCCccCCCCC-CCCh--HHHhhCCCeEEEEeCCC
Q psy4014 15 LQKYPVLIYIHGESFEWNSGN-PYDG--RILASYADFVVITLNYR 56 (85)
Q Consensus 15 ~~~~PVvv~iHGGg~~~g~~~-~~~~--~~la~~~~~ivVsv~YR 56 (85)
....|.+|.+||=- |+.. .|-. ..-+.+.|+.+|.+|.|
T Consensus 72 ~~~~P~vVl~HGL~---G~s~s~y~r~L~~~~~~rg~~~Vv~~~R 113 (345)
T COG0429 72 AAKKPLVVLFHGLE---GSSNSPYARGLMRALSRRGWLVVVFHFR 113 (345)
T ss_pred ccCCceEEEEeccC---CCCcCHHHHHHHHHHHhcCCeEEEEecc
Confidence 45679999999964 4433 3321 22333468999999999
No 127
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=27.80 E-value=70 Score=20.85 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=20.8
Q ss_pred EEEEEeCCCccCCCCCCCCh--HHHhhCCCeEEEEeCCCC
Q psy4014 20 VLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYRL 57 (85)
Q Consensus 20 Vvv~iHGGg~~~g~~~~~~~--~~la~~~~~ivVsv~YRl 57 (85)
.++++|+|| |+...|.. +.+... .+.|..+++.-
T Consensus 2 ~lf~~p~~g---G~~~~y~~la~~l~~~-~~~v~~i~~~~ 37 (229)
T PF00975_consen 2 PLFCFPPAG---GSASSYRPLARALPDD-VIGVYGIEYPG 37 (229)
T ss_dssp EEEEESSTT---CSGGGGHHHHHHHTTT-EEEEEEECSTT
T ss_pred eEEEEcCCc---cCHHHHHHHHHhCCCC-eEEEEEEecCC
Confidence 478899987 55555543 333332 36677777663
No 128
>PF03415 Peptidase_C11: Clostripain family This family belongs to family C11 of the peptidase classification.; InterPro: IPR005077 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C11 (clostripain family, clan CD). ; PDB: 3UWS_A.
Probab=27.05 E-value=21 Score=26.73 Aligned_cols=15 Identities=20% Similarity=0.678 Sum_probs=9.5
Q ss_pred CCccEEEEEeCCCcc
Q psy4014 16 QKYPVLIYIHGESFE 30 (85)
Q Consensus 16 ~~~PVvv~iHGGg~~ 30 (85)
.+.-.++|=||+||.
T Consensus 97 ~~y~LIlw~HG~Gw~ 111 (397)
T PF03415_consen 97 DRYGLILWDHGGGWL 111 (397)
T ss_dssp CEEEEEEES-B-TT-
T ss_pred ccEEEEEEECCCCCC
Confidence 345688999999993
No 129
>cd02421 Peptidase_C39_likeD A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this sub-family.
Probab=26.39 E-value=51 Score=19.57 Aligned_cols=17 Identities=6% Similarity=0.065 Sum_probs=13.5
Q ss_pred CCCccEEEEEeCCCccC
Q psy4014 15 LQKYPVLIYIHGESFEW 31 (85)
Q Consensus 15 ~~~~PVvv~iHGGg~~~ 31 (85)
...+|++++.++|.|..
T Consensus 67 ~~~lP~i~~~~~g~~~V 83 (124)
T cd02421 67 TLLLPAILLLKNGRACV 83 (124)
T ss_pred cccCCEEEEEcCCCEEE
Confidence 44689999999988764
No 130
>PRK12472 hypothetical protein; Provisional
Probab=25.42 E-value=2.1e+02 Score=22.61 Aligned_cols=43 Identities=21% Similarity=0.174 Sum_probs=26.8
Q ss_pred EEEeCCCccCCCCCCCCh--------HHHhh--CCCeEEEEeCCCCCCcccCCCC
Q psy4014 22 IYIHGESFEWNSGNPYDG--------RILAS--YADFVVITLNYRLGVLVDITLK 66 (85)
Q Consensus 22 v~iHGGg~~~g~~~~~~~--------~~la~--~~~~ivVsv~YRlap~Gfl~~~ 66 (85)
++|||+.|. |....|+| .+|.. ..|..|+..+...+| +-|++.
T Consensus 123 iaIHGt~~p-G~paSHGCVRLp~aDAkwLFd~V~vGTpVIIt~td~~p-~~~~~~ 175 (508)
T PRK12472 123 IALHGGPLP-GYAASHGCVRMPYGFAEKLFDKTRIGMRVIVSPNDAAP-VDISHP 175 (508)
T ss_pred EEEecCCCC-CCCCCCcccCCCHHHHHHHHhcCCCCCEEEEECCCCCc-cccCCc
Confidence 689999875 55556655 33332 357777777778777 444443
No 131
>COG5140 UFD1 Ubiquitin fusion-degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.12 E-value=69 Score=23.28 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=21.3
Q ss_pred cCCCCchhhhhhhhhhccccccCC
Q psy4014 62 DITLKRKKTKKKKKKKKKKILSQD 85 (85)
Q Consensus 62 fl~~~~~~~~~~~~~~~~~~~~~~ 85 (85)
||...+.+.-=++-++||+.|+.+
T Consensus 134 FLdI~dpkavLEn~LRNfstLt~~ 157 (331)
T COG5140 134 FLDIEDPKAVLENCLRNFSTLTEG 157 (331)
T ss_pred eEeccChHHHHHHHHhhccccccC
Confidence 888999999999999999999763
No 132
>PF03283 PAE: Pectinacetylesterase
Probab=24.40 E-value=96 Score=23.03 Aligned_cols=18 Identities=22% Similarity=0.650 Sum_probs=15.0
Q ss_pred CCccEEEEEeCCCccCCC
Q psy4014 16 QKYPVLIYIHGESFEWNS 33 (85)
Q Consensus 16 ~~~PVvv~iHGGg~~~g~ 33 (85)
...-.|||+-||||+...
T Consensus 48 ~s~~~li~leGGG~C~~~ 65 (361)
T PF03283_consen 48 GSNKWLIFLEGGGWCWDA 65 (361)
T ss_pred CCceEEEEeccchhcCCh
Confidence 456789999999999874
No 133
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=23.17 E-value=1e+02 Score=19.74 Aligned_cols=37 Identities=8% Similarity=0.021 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCccCCCCCCCC-----hHHHhhCCCeEEEEeC
Q psy4014 17 KYPVLIYIHGESFEWNSGNPYD-----GRILASYADFVVITLN 54 (85)
Q Consensus 17 ~~PVvv~iHGGg~~~g~~~~~~-----~~~la~~~~~ivVsv~ 54 (85)
..++||+++.++|+-....... ...+.. .++.++.+.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~-~~v~vv~Is 70 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK-LNAEVLGVS 70 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 4689999999999876654211 134433 466666664
No 134
>KOG1282|consensus
Probab=23.14 E-value=80 Score=24.42 Aligned_cols=19 Identities=11% Similarity=0.238 Sum_probs=14.5
Q ss_pred CCCCccEEEEEeCCCccCC
Q psy4014 14 PLQKYPVLIYIHGESFEWN 32 (85)
Q Consensus 14 ~~~~~PVvv~iHGGg~~~g 32 (85)
.....|+|+|+-||=-+..
T Consensus 69 ~P~~dPlvLWLnGGPGCSS 87 (454)
T KOG1282|consen 69 NPETDPLVLWLNGGPGCSS 87 (454)
T ss_pred CCCCCCEEEEeCCCCCccc
Confidence 3445799999999976654
No 135
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=23.08 E-value=83 Score=22.44 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=23.0
Q ss_pred ccEEEEEeCCCccCCCC--------CCCChH-----HHhhCCCeEEEEeCCCC
Q psy4014 18 YPVLIYIHGESFEWNSG--------NPYDGR-----ILASYADFVVITLNYRL 57 (85)
Q Consensus 18 ~PVvv~iHGGg~~~g~~--------~~~~~~-----~la~~~~~ivVsv~YRl 57 (85)
.|.||++||=+...-.. ..+... .+. ..++-||.+|+|=
T Consensus 31 ~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~-~~~~~vi~~D~~G 82 (351)
T TIGR01392 31 SNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAID-TDRYFVVCSNVLG 82 (351)
T ss_pred CCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcC-CCceEEEEecCCC
Confidence 47899999965422110 022221 222 3589999999993
No 136
>KOG0270|consensus
Probab=22.82 E-value=65 Score=25.02 Aligned_cols=37 Identities=35% Similarity=0.340 Sum_probs=29.2
Q ss_pred CCeEEEEeCCCCCCcccCCCCchhhhhhhhhhccccc
Q psy4014 46 ADFVVITLNYRLGVLVDITLKRKKTKKKKKKKKKKIL 82 (85)
Q Consensus 46 ~~~ivVsv~YRlap~Gfl~~~~~~~~~~~~~~~~~~~ 82 (85)
..+-+..++-|-+.+.++.++...-+|+|+++|+++-
T Consensus 202 p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~ 238 (463)
T KOG0270|consen 202 PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNS 238 (463)
T ss_pred ceeEEeccccccccccceeechhhhhhhhhhcccccc
Confidence 3677889999999999999997777777777666553
No 137
>KOG2948|consensus
Probab=22.76 E-value=49 Score=24.46 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=20.5
Q ss_pred CCccEEEEEeCCCccCCCCCCCChHHHh
Q psy4014 16 QKYPVLIYIHGESFEWNSGNPYDGRILA 43 (85)
Q Consensus 16 ~~~PVvv~iHGGg~~~g~~~~~~~~~la 43 (85)
+.-|-.+|+|-.||+.|+.+.-....+|
T Consensus 290 SgIpgc~FVH~SGFIGgn~T~EgAl~Ma 317 (327)
T KOG2948|consen 290 SGIPGCIFVHASGFIGGNKTREGALEMA 317 (327)
T ss_pred cCCCCeEEEeecccccCcccHHHHHHHH
Confidence 3468899999999999987754444443
No 138
>PLN02209 serine carboxypeptidase
Probab=21.65 E-value=94 Score=23.69 Aligned_cols=15 Identities=27% Similarity=0.631 Sum_probs=11.8
Q ss_pred CCCCccEEEEEeCCC
Q psy4014 14 PLQKYPVLIYIHGES 28 (85)
Q Consensus 14 ~~~~~PVvv~iHGGg 28 (85)
.....|+++|+-||=
T Consensus 64 ~~~~~Pl~lWlnGGP 78 (437)
T PLN02209 64 NPQEDPLIIWLNGGP 78 (437)
T ss_pred CCCCCCEEEEECCCC
Confidence 344679999999993
No 139
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=21.38 E-value=68 Score=17.90 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=24.9
Q ss_pred CCccEEEEEeCCCccCCCCC----CCCh---HHHhhCCCeEEEEeCC
Q psy4014 16 QKYPVLIYIHGESFEWNSGN----PYDG---RILASYADFVVITLNY 55 (85)
Q Consensus 16 ~~~PVvv~iHGGg~~~g~~~----~~~~---~~la~~~~~ivVsv~Y 55 (85)
.+.|++|+++ +.|+..... .... ..+.. .+++.+.++.
T Consensus 16 ~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~ 60 (82)
T PF13899_consen 16 EGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDV 60 (82)
T ss_dssp HTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEET
T ss_pred cCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEc
Confidence 4689999995 667766542 2222 33233 5899999887
No 140
>KOG2853|consensus
Probab=21.25 E-value=88 Score=24.13 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=12.9
Q ss_pred EEEEeCCCccCCCCCCCChHHHhhCCCeEEEEe
Q psy4014 21 LIYIHGESFEWNSGNPYDGRILASYADFVVITL 53 (85)
Q Consensus 21 vv~iHGGg~~~g~~~~~~~~~la~~~~~ivVsv 53 (85)
+|.|-||+ .|+...+--...+...|+-||.+
T Consensus 89 VvIIGGG~--~GsS~AfWLKer~rd~gl~VvVV 119 (509)
T KOG2853|consen 89 VVIIGGGG--SGSSTAFWLKERARDEGLNVVVV 119 (509)
T ss_pred EEEECCCc--cchhhHHHHHHHhhcCCceEEEE
Confidence 44444443 44444333333333344444443
No 141
>PF12923 RRP7: Ribosomal RNA-processing protein 7 (RRP7); InterPro: IPR024326 Ribosomal RNA-processing protein 7 (RRP7) is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly []. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [, ]. This entry includes RRP7 and homologous sequences from other organisms.
Probab=21.10 E-value=1e+02 Score=19.47 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=12.1
Q ss_pred hhCCCeEEEEeCCCC
Q psy4014 43 ASYADFVVITLNYRL 57 (85)
Q Consensus 43 a~~~~~ivVsv~YRl 57 (85)
.++.|+|+|+-..|-
T Consensus 47 ~DEDGwvtVtr~gr~ 61 (131)
T PF12923_consen 47 PDEDGWVTVTRGGRK 61 (131)
T ss_pred CCCCCCEEeecCCcc
Confidence 456799999988776
No 142
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=21.08 E-value=1.5e+02 Score=21.39 Aligned_cols=53 Identities=4% Similarity=-0.082 Sum_probs=32.6
Q ss_pred CCceeeCCCCCCCCccEEEEEeCCCccCCCCCCCCh-HHHhhCCCeEEEEeCCCC
Q psy4014 4 YPRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYDG-RILASYADFVVITLNYRL 57 (85)
Q Consensus 4 ~~~i~~p~~~~~~~~PVvv~iHGGg~~~g~~~~~~~-~~la~~~~~ivVsv~YRl 57 (85)
++-+|.|.. ......++|.+||-|-.-..+..... +.-..+.|+..+++.--.
T Consensus 74 flaL~~~~~-~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~ 127 (310)
T PF12048_consen 74 FLALWRPAN-SAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPD 127 (310)
T ss_pred EEEEEeccc-CCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCC
Confidence 466788873 45678999999998733222222222 333345699888875544
No 143
>cd02417 Peptidase_C39_likeA A sub-family of peptidase C39 which contains Cyclolysin and Hemolysin processing peptidases. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this
Probab=20.70 E-value=73 Score=18.73 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=13.2
Q ss_pred CCCccEEEEEeCCCccC
Q psy4014 15 LQKYPVLIYIHGESFEW 31 (85)
Q Consensus 15 ~~~~PVvv~iHGGg~~~ 31 (85)
.-.+|++++..+|.|..
T Consensus 67 ~~~lP~I~~~~~g~~~V 83 (121)
T cd02417 67 RLPLPALAWDDDGGHFI 83 (121)
T ss_pred cCCCCEEEEccCCCEEE
Confidence 44689999988887764
No 144
>PRK03348 DNA polymerase IV; Provisional
Probab=20.59 E-value=1e+02 Score=23.46 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=18.6
Q ss_pred eCCCccCCCCCCCChHHHhhCCCeEEEEeCCCCCCcc
Q psy4014 25 HGESFEWNSGNPYDGRILASYADFVVITLNYRLGVLV 61 (85)
Q Consensus 25 HGGg~~~g~~~~~~~~~la~~~~~ivVsv~YRlap~G 61 (85)
||-||+.|+. .|++-|.+..|..+-|
T Consensus 401 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 426 (454)
T PRK03348 401 YGHGWVQGAG-----------HGVVTVRFETRTTGPG 426 (454)
T ss_pred CCCcceecCC-----------CeEEEEEeccCCCCCC
Confidence 7888888864 4777777777776656
No 145
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=20.52 E-value=2.3e+02 Score=23.24 Aligned_cols=61 Identities=20% Similarity=0.039 Sum_probs=37.7
Q ss_pred CCCccEEEEEeCCCccCCCCCCCCh-HHHhhCCCeEEEEeCCCCCCcccCCCCchhhhhhhhhhc
Q psy4014 15 LQKYPVLIYIHGESFEWNSGNPYDG-RILASYADFVVITLNYRLGVLVDITLKRKKTKKKKKKKK 78 (85)
Q Consensus 15 ~~~~PVvv~iHGGg~~~g~~~~~~~-~~la~~~~~ivVsv~YRlap~Gfl~~~~~~~~~~~~~~~ 78 (85)
..+.|++++-.|..-..-.+..... -.|.+ .|+|.....-|=+ |.|...=.++.|-.+|||
T Consensus 445 ~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlD-RGfiyAIAHVRGG--gelG~~WYe~GK~l~K~N 506 (682)
T COG1770 445 DGSAPLLLYGYGAYGISMDPSFSIARLSLLD-RGFVYAIAHVRGG--GELGRAWYEDGKLLNKKN 506 (682)
T ss_pred CCCCcEEEEEeccccccCCcCcccceeeeec-CceEEEEEEeecc--cccChHHHHhhhhhhccc
Confidence 4557888888887644444433222 33344 4999888877743 566666666666666665
No 146
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=20.32 E-value=1e+02 Score=23.48 Aligned_cols=15 Identities=27% Similarity=0.631 Sum_probs=11.9
Q ss_pred CCCCccEEEEEeCCC
Q psy4014 14 PLQKYPVLIYIHGES 28 (85)
Q Consensus 14 ~~~~~PVvv~iHGGg 28 (85)
.....|+++|+-||=
T Consensus 62 ~~~~~P~~lWlnGGP 76 (433)
T PLN03016 62 NPKEDPLLIWLNGGP 76 (433)
T ss_pred CcccCCEEEEEcCCC
Confidence 345679999999993
No 147
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=20.21 E-value=29 Score=25.71 Aligned_cols=41 Identities=24% Similarity=0.092 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCccCCCCCCC-ChHHHhhCCCeEEEEeCCCC
Q psy4014 17 KYPVLIYIHGESFEWNSGNPY-DGRILASYADFVVITLNYRL 57 (85)
Q Consensus 17 ~~PVvv~iHGGg~~~g~~~~~-~~~~la~~~~~ivVsv~YRl 57 (85)
.-||++++-|.+=..+..... ....+|.+.+..+|.+++|-
T Consensus 28 ~gpifl~~ggE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRy 69 (434)
T PF05577_consen 28 GGPIFLYIGGEGPIEPFWINNGFMWELAKEFGALVVALEHRY 69 (434)
T ss_dssp TSEEEEEE--SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TT
T ss_pred CCCEEEEECCCCccchhhhcCChHHHHHHHcCCcEEEeehhh
Confidence 378988885554221110011 13678888999999999994
Done!