RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4014
(85 letters)
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 76.8 bits (189), Expect = 2e-18
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 17 KYPVLIYIHGESFEWNSGN--PYDGRILASYADFVVITLNYRLGVL 60
P+LI+I+G F S Y+ I+A+ + +V + YR+G
Sbjct: 140 GLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAF 185
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 76.7 bits (189), Expect = 3e-18
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 17 KYPVLIYIHGESFEWNSGNPYDGRILASYADFVVITLNYRLGVL 60
+ PV+++IHG + + YDG LA++ + VV+T+ YRLG+
Sbjct: 114 RLPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIW 157
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 75.2 bits (185), Expect = 7e-18
Identities = 26/48 (54%), Positives = 34/48 (70%)
Query: 13 QPLQKYPVLIYIHGESFEWNSGNPYDGRILASYADFVVITLNYRLGVL 60
PV++YIHG S+ +GN YDG +LASY + +VIT+NYRLGVL
Sbjct: 126 DSGGPKPVMVYIHGGSYMEGTGNLYDGSVLASYGNVIVITVNYRLGVL 173
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 74.7 bits (184), Expect = 9e-18
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 12 GQPLQKYPVLIYIHGESFEWNSGN--PYDGRILASYADFVVITLNYRLGVL 60
+P PVLI+I+G F + + YDGR LA V++++NYR+G
Sbjct: 106 PRPASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTF 156
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 73.9 bits (182), Expect = 2e-17
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 16 QKYPVLIYIHGESFEWNSGN--PYDGRILASYADFVVITLNYRLGVL 60
+ VLI+I+G F+ + + YDG+ LA +V+++NYR+G L
Sbjct: 105 KNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGAL 151
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 73.2 bits (180), Expect = 3e-17
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 16 QKYPVLIYIHGESFEWNSGN--PYDGRILASYADFVVITLNYRLGVL 60
+ V+++I+G F S Y+G+ LA + V+++L+YR+G
Sbjct: 107 KSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAF 153
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 69.3 bits (170), Expect = 8e-16
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 16 QKYPVLIYIHGESFEWNSGNP--------YDGRILASYADFVVITLNYRLGVL 60
PV+I+I+G +F + YDG +A+ + +V+T NYR+G L
Sbjct: 96 HDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPL 148
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 66.1 bits (162), Expect = 9e-15
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 16 QKYPVLIYIHGESFEWNSGN--PYDGRILASYADFVVITLNYRLGVL 60
Q PV+++IHG +F +G+ YDG LA+ + +V+TLNYRLG
Sbjct: 95 QNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPF 141
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 66.1 bits (162), Expect = 1e-14
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 16 QKYPVLIYIHGESFEWNSGN--PYDGRILASYADFVVITLNYRLGVL 60
+K PVL +IHG +F + SG+ YDG A + D VV+T+NYR+ V
Sbjct: 97 KKRPVLFWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINYRMNVF 143
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 63.9 bits (156), Expect = 7e-14
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 17 KYPVLIYIHGESFEWNSGNPYDGRIL--ASYADFVVITLNYRLGVL 60
K PV ++I G + NS Y+G + AS V +T NYR+G L
Sbjct: 101 KLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGAL 146
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 60.5 bits (147), Expect = 1e-12
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 17 KYPVLIYIHGESFEWNSGNPYDGRILASYA-----DFVVITLNYRLGVL 60
K PV+++I+G +F + S Y G + V +++NYR G
Sbjct: 121 KLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPF 169
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 59.8 bits (145), Expect = 2e-12
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 16 QKYPVLIYIHGESFEWNSGNPYDGRILASYA-----DFVVITLNYRLGVL 60
PV+++I G FE S + + + + + + +NYR+
Sbjct: 112 ANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASW 161
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 55.4 bits (134), Expect = 5e-11
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 13 QPLQKYPVLIYIHGESFEWNSGNP--YDGRILASYADFVVITLNYRLGVL 60
PVL++IHG F + SG+ + L S D +VIT NYRL V
Sbjct: 110 NRFAGLPVLVFIHGGGFAFGSGDSDLHGPEYLVSK-DVIVITFNYRLNVY 158
>3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase,
gibberellin signaling pathway, hydrolase, nucleus,
hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp}
PDB: 3ed1_A*
Length = 365
Score = 43.9 bits (104), Expect = 8e-07
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 16 QKYPVLIYIHG-----ESFEWNSGNPYDG--RILASYADFVVITLNYRL 57
+ +PV+I+ HG S YD R + VV+++NYR
Sbjct: 110 EPFPVIIFFHGGSFVHSSASS---TIYDSLCRRFVKLSKGVVVSVNYRR 155
>2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia
eriantha} PDB: 2o7v_A
Length = 338
Score = 43.5 bits (103), Expect = 9e-07
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 16 QKYPVLIYIHG-----ESFEWNSGNPYDG--RILASYADFVVITLNYRL 57
K P+++Y HG S + +A +A V+ +++YRL
Sbjct: 81 AKLPLVVYFHGGGFILFSAAST---IFHDFCCEMAVHAGVVIASVDYRL 126
>2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor,
gibberellin, gibberellin signaling pathway, hydrolase,
nucleus, receptor, developmental protein; HET: GA3;
1.80A {Arabidopsis thaliana} PDB: 2zsi_A*
Length = 351
Score = 42.8 bits (101), Expect = 2e-06
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
Query: 16 QKYPVLIYIHG-----ESFEWNSGNPYDG--RILASYADFVVITLNYRL 57
PV+++ HG S YD R L VV+++NYR
Sbjct: 111 DIVPVILFFHGGSFAHSSANSA---IYDTLCRRLVGLCKCVVVSVNYRR 156
>2wir_A Pesta, alpha/beta hydrolase fold-3 domain protein; tertiary
alcohol; 2.00A {Pyrobaculum calidifontis} PDB: 2yh2_A
3zwq_A
Length = 313
Score = 40.7 bits (96), Expect = 1e-05
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 17 KYPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYRL 57
+ P ++Y HG F S +D R LA+ + VV++++YRL
Sbjct: 75 RLPAVVYYHGGGFVLGSVETHDHVCRRLANLSGAVVVSVDYRL 117
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO
PSI-2, protein structure initiative, midwest center for
STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Length = 274
Score = 40.2 bits (94), Expect = 1e-05
Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 16 QKYPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYRL 57
+ ++Y+HG + + + + L + + V+ L+Y L
Sbjct: 25 EPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLL 68
>3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured
bacterium} PDB: 3dnm_A
Length = 322
Score = 39.6 bits (93), Expect = 2e-05
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 19 PVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYRL 57
++Y HG + S + + LA + + +L+YRL
Sbjct: 81 AHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRL 121
>3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured
bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A*
3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A
Length = 322
Score = 39.6 bits (93), Expect = 3e-05
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 19 PVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYRL 57
++Y+HG + S N + ++ + + L+YRL
Sbjct: 81 KAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRL 121
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold,
hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A
{Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Length = 303
Score = 39.1 bits (91), Expect = 4e-05
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 13 QPLQKYPVLIYIHGESFEWNSGNPYDGRILASY---ADFVVITLNYRL 57
+ + P+ +++HG W + + + V ++Y L
Sbjct: 77 KTTNQAPLFVFVHGGY--WQEMDMSMSCSIVGPLVRRGYRVAVMDYNL 122
>1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE;
2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2
Length = 311
Score = 38.4 bits (90), Expect = 5e-05
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 14 PLQKYPVLIYIHGESFEWNSGNP--YDG--RILASYADFVVITLNYRL 57
PVL+Y HG + + +D R +A ++ V++++YRL
Sbjct: 75 QKPDSPVLVYYHGGG--FVICSIESHDALCRRIARLSNSTVVSVDYRL 120
>2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A
{Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A
1qz3_A
Length = 310
Score = 38.4 bits (90), Expect = 6e-05
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 19 PVLIYIHGESFEWNSGNP--YDG--RILASYADFVVITLNYRL 57
P L+Y HG S W G+ +D R+LA VV +++YRL
Sbjct: 75 PALVYYHGGS--WVVGDLETHDPVCRVLAKDGRAVVFSVDYRL 115
>3h04_A Uncharacterized protein; protein with unknown function,
structural genomics, MCSG, PS protein structure
initiative; 1.90A {Staphylococcus aureus subsp}
Length = 275
Score = 38.3 bits (89), Expect = 7e-05
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 17 KYPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYRL 57
V++YIHG + N + + + +I L+YRL
Sbjct: 28 TKGVIVYIHGGGLMFGKANDLSPQYIDILT-EHYDLIQLSYRL 69
>3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella
typhimurium}
Length = 326
Score = 38.0 bits (89), Expect = 7e-05
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 19 PVLIYIHGESFEWNSGNP--YDG--RILASYADFVVITLNYRL 57
L Y+HG + GN +D R+LA Y VI ++Y L
Sbjct: 88 ATLYYLHGGG--FILGNLDTHDRIMRLLARYTGCTVIGIDYSL 128
>3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic,
dimer, archaea, R267G, hydro; 1.65A {Sulfolobus
tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A
Length = 323
Score = 37.6 bits (88), Expect = 1e-04
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 17 KYPVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYRL 57
Y VL+Y HG F YD R + + V I+++YRL
Sbjct: 89 PYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRL 131
>2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme,
hydrolase, HSL, alpha/beta hydrolase fold; 2.3A
{Uncultured archaeon}
Length = 311
Score = 37.6 bits (88), Expect = 1e-04
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 18 YPVLIYIHGESFEWNSGNP--YDG--RILASYADFVVITLNYRL 57
P ++Y HG + G+ +D R L+ +D VV++++YRL
Sbjct: 73 LPAVLYYHGGG--FVFGSIETHDHICRRLSRLSDSVVVSVDYRL 114
>3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural
genomics CEN infectious disease, tuberculosis, O LIPW,
heroin esterase; 1.75A {Mycobacterium marinum}
Length = 317
Score = 37.3 bits (87), Expect = 1e-04
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 19 PVLIYIHGESFEWNSGNP--YDG--RILASYADFVVITLNYRL 57
PV++Y H + GN LA A V++++YRL
Sbjct: 86 PVVVYCHAGG--FALGNLDTDHRQCLELARRARCAVVSVDYRL 126
>3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus
subsp}
Length = 326
Score = 36.6 bits (85), Expect = 2e-04
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 19 PVLIYIHGESFEWNSGNPYDG--RILASYADFVVITLNYRL 57
++YIHG + + + V+ Y
Sbjct: 97 KKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPK 137
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure
initiative, PS hydrolase; HET: MSE; 1.85A
{Saccharomyces cerevisiae} SCOP: c.69.1.32
Length = 273
Score = 36.5 bits (84), Expect = 3e-04
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 16 QKYPVLIYIHGESFEWNSGNPYDGRILASY-------ADFVVITLNYRL 57
+IYIHG ++ P D LA+ + ++ YRL
Sbjct: 39 NTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRL 87
>1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP:
c.69.1.2 PDB: 1lzk_A
Length = 323
Score = 36.5 bits (85), Expect = 3e-04
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 19 PVLIYIHGESFEWNSGNP--YDG--RILASYADFVVITLNYRL 57
PVL++IHG + G D +A F V + YRL
Sbjct: 80 PVLLWIHGGG--FAIGTAESSDPFCVEVARELGFAVANVEYRL 120
>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7;
2.10A {Thermoanaerobacterium SP}
Length = 346
Score = 35.2 bits (81), Expect = 9e-04
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 16 QKYPVLIYIHGESFEWNSGNPYDGRILASYADFVVITLNYR 56
K+P LI HG + NSG+ D + A F V+ ++ R
Sbjct: 106 GKHPALIRFHG--YSSNSGDWNDKLNYVA-AGFTVVAMDVR 143
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold,
structural genomics, joint cente structural genomics,
JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Length = 262
Score = 34.1 bits (78), Expect = 0.002
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 16 QKYPVLIYIHGESFEWNSGNPYDGRILASY---ADFVVITLNYRLG 58
+ +++HG W + + LA + V +Y L
Sbjct: 61 TPVGLFVFVHGGY--WMAFDKSSWSHLAVGALSKGWAVAMPSYELC 104
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 33.7 bits (77), Expect = 0.003
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 4 YPRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYDGRILASY---ADFVVITLNYRL 57
Y D + YP++I G F ++SG + +A+ A + LNY+L
Sbjct: 21 YWLDQISDFETAVDYPIMIICPGGGFTYHSGR--EEAPIATRMMAAGMHTVVLNYQL 75
>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR
structure initiative, PSI, joint center for structural
GENO hydrolase; 2.10A {Thermotoga maritima} SCOP:
c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A*
Length = 337
Score = 33.0 bits (75), Expect = 0.005
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 16 QKYPVLIYIHGESFEWNSGNPYDGRILASYADFVVITLNYR 56
+K P ++ G + G P+D S ++ ++ R
Sbjct: 93 EKLPCVVQYIG--YNGGRGFPHDWLFWPS-MGYICFVMDTR 130
>1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A,
alpha/beta hydrolase family; 1.85A {Bacillus subtilis}
SCOP: c.69.1.2
Length = 361
Score = 32.8 bits (75), Expect = 0.006
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 19 PVLIYIHGESFEWNSGNP--YDG--RILASYADFVVITLNYRL 57
P L+Y HG + + + LA+ A VV+ +++R
Sbjct: 110 PGLVYTHGGGMTILTTDNRVHRRWCTDLAA-AGSVVVMVDFRN 151
>2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas
mendocina}
Length = 258
Score = 32.3 bits (73), Expect = 0.008
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 4 YPRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYDGRILASYADFVVITLNYR 56
PRD G+ G +PV+++ +G + S AS+ FVV
Sbjct: 38 RPRDLGQGGVR---HPVILWGNG-TGAGPSTYAGLLSHWASHG-FVVAAAETS 85
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 32.5 bits (74), Expect = 0.009
Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 10/57 (17%)
Query: 5 PRDFGKVGQPLQKYPVLIYIHG-----ESFEWNSGNPYDGRILASYADFVVITLNYR 56
P G + P ++ HG + Y S V +NY
Sbjct: 411 PHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAY----FTS-RGIGVADVNYG 462
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 32.4 bits (74), Expect = 0.010
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 4 YPRDFGKVGQPLQKYPVLIYIHGE------SFEWNSGNPYDGRILASYADFVVITLNYR 56
P F P +KYPV++Y++G + W S +A + V T++ R
Sbjct: 475 MPLHF----DPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQ-KGYAVFTVDSR 528
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 31.3 bits (71), Expect = 0.023
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 10/50 (20%)
Query: 12 GQPLQKYPVLIYIHG-----ESFEWNSGNPYDGRILASYADFVVITLNYR 56
G+ P ++ +HG +S W++ LA+ A F V+ NYR
Sbjct: 354 GRAPTPGPTVVLVHGGPFAEDSDSWDTFAAS----LAA-AGFHVVMPNYR 398
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 30.5 bits (69), Expect = 0.036
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 10/60 (16%)
Query: 2 PQYPRDFGKVGQPLQKYPVLIYIHGESFEWNSGNPYDGRILASY---ADFVVITLNYRLG 58
Q PR +P +I G + + + LA + V+ LNY +
Sbjct: 32 LQNPRQNEN-----YTFPAIIICPGGG--YQHISQRESDPLALAFLAQGYQVLLLNYTVM 84
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 30.2 bits (68), Expect = 0.061
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 4 YPRDFGKVGQPLQKYPVLIYIHGESFE---WNSGNPYDGRILASYADFVVITLNYR 56
P F +KYP+L+ ++ LAS + +V + + R
Sbjct: 492 LPPHF----DKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGR 543
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 29.8 bits (67), Expect = 0.074
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 7/56 (12%)
Query: 4 YPRDFGKVGQPLQKYPVLIYIHGESFE---WNSGNPYDGRILASYADFVVITLNYR 56
P F YP+L+ + G ++ S VV+ + R
Sbjct: 486 KPATF----TDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGR 537
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 29.4 bits (66), Expect = 0.087
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 17 KYPVLIYIHGESFEWNSGNPYDGRILASY-AD--FVVITLNYR 56
P ++++HG G+ + + A + +T + R
Sbjct: 27 GMPGVLFVHG-----WGGSQHHSLVRAREAVGLGCICMTFDLR 64
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.60A {Thermus
thermophilus} SCOP: c.69.1.27
Length = 238
Score = 29.3 bits (65), Expect = 0.10
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 6/45 (13%)
Query: 14 PLQKYPVLIYIHG--ESFEWNSGNPYDGRILASYADFVVITLNYR 56
P +L+ +HG S E A F+++ +
Sbjct: 20 PEAPKALLLALHGLQGSKEHIL---ALLPGYAE-RGFLLLAFDAP 60
>1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha
sandwich, PSI, protein structure initiative; 1.50A
{Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A
3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B*
Length = 318
Score = 28.6 bits (64), Expect = 0.16
Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 16 QKYPVLIYIHGESFEWNSGNPYDGRILASYADFVVITLNYR 56
+P ++ HG + + G ++ A + + R
Sbjct: 80 GPHPAIVKYHGYNASY-DGEIHEMVNWAL-HGYATFGMLVR 118
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 28.5 bits (64), Expect = 0.19
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 4 YPRDFGKVGQPLQKYPVLIYIHGE------SFEWNSGNPYDGRILASYADFVVITLNYR 56
P F P ++YPV +Y++G + W + + +VV +L+ R
Sbjct: 507 KPAGF----DPAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNR 561
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 28.3 bits (63), Expect = 0.23
Identities = 9/46 (19%), Positives = 13/46 (28%), Gaps = 5/46 (10%)
Query: 16 QKYPVLIYIHGESFEWNSGNPYDGRILASY---ADFVVITLNYRLG 58
P +I + G S + LA + L Y L
Sbjct: 48 TNLPAIIIVPGGS--YTHIPVAQAESLAMAFAGHGYQAFYLEYTLL 91
>3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading
enzyme, RICE, virulence, innate immune responses,
pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A
3h2k_A* 3h2h_A 3h2i_A
Length = 397
Score = 27.6 bits (60), Expect = 0.43
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 9/53 (16%)
Query: 13 QPLQKYPVLIYIHGESF-------EWNSGNPYDGRILASYAD--FVVITLNYR 56
+ YP+L + H + D ++ A +VV+ +Y
Sbjct: 74 RCSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDPLVTRLASQGYVVVGSDYL 126
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate
ligase; nucleotide-binding, peptidoglycan synthesis,
MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium
tuberculosis} PDB: 2xja_A*
Length = 535
Score = 26.8 bits (60), Expect = 0.79
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 39 GRILASYADFVVIT 52
GRI A AD VV+T
Sbjct: 433 GRIAAQLADLVVVT 446
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate
ligase; peptidoglycan biosynthesis; HET: KCX UAG API;
2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1
c.72.2.1
Length = 498
Score = 26.4 bits (59), Expect = 1.0
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 39 GRILASYADFVVIT 52
G I +AD V+T
Sbjct: 398 GAIAEEFADVAVVT 411
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 26.3 bits (58), Expect = 1.2
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 4 YPRDFGKVGQPLQKYPVLIYIHGE------SFEWNSGNPYDGRILASYADFVVITLNYR 56
P F +KYP+LI ++G + LAS V+ ++ R
Sbjct: 486 LPPQF----DRSKKYPLLIQVYGGPCSQSVRSVFAVNW---ISYLASKEGMVIALVDGR 537
>2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A
virulence facto LUNG infection; HET: MSE; 1.7A
{Streptococcus pneumoniae}
Length = 263
Score = 26.2 bits (58), Expect = 1.3
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 5 PRDFGKVGQPLQKYPVLIYIHG 26
P + PVL +HG
Sbjct: 28 PDANRVEEPECEDIPVLYLLHG 49
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 26.2 bits (57), Expect = 1.3
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 4/23 (17%)
Query: 4 YPRDFGKVGQPLQKYPVLIYIHG 26
P+D P +KYP+++++HG
Sbjct: 164 VPKDV----NPDRKYPLVVFLHG 182
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function,
zinc finger, metal-binding protein, structural
genomics; NMR {Mus musculus} SCOP: g.41.3.4
Length = 85
Score = 25.4 bits (55), Expect = 1.4
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 66 KRKKTKKKKKKKKKKI 81
+ +K KKK
Sbjct: 2 SSGSSGRKPPPKKKMT 17
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 26.0 bits (57), Expect = 1.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 66 KRKKTKKKKKKKKKKILSQ 84
KKKKKKKK+ Q
Sbjct: 94 GATGKKKKKKKKKRGPKVQ 112
Score = 24.9 bits (54), Expect = 4.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 66 KRKKTKKKKKKKKKK 80
T KKKKKKKKK
Sbjct: 92 GDGATGKKKKKKKKK 106
Score = 24.1 bits (52), Expect = 8.2
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 66 KRKKTKKKKKKKKKKILSQ 84
KKKKKKKKK+
Sbjct: 93 DGATGKKKKKKKKKRGPKV 111
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology,
oxidoreductase; 1.50A {Methanocaldococcus jannaschii}
PDB: 3rhd_A*
Length = 486
Score = 25.6 bits (57), Expect = 1.9
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 9/33 (27%)
Query: 21 LIYIHGESFEWNSG------NPYDGRILASYAD 47
+++I G+ W + NPY ++
Sbjct: 1 VMFIDGK---WINREDMDVINPYSLEVIKKIPA 30
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 25.5 bits (57), Expect = 2.7
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 62 DITLKRKKTKKKKKKKKK 79
DI+ K+K +K+K+ KK+
Sbjct: 557 DISRKKKLLQKQKEGKKR 574
>1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive
mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP:
c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A*
Length = 297
Score = 25.4 bits (55), Expect = 2.7
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 13 QPLQKYPVLIYIHGESFEWNSGNPYDGRI 41
P +KY + +HG N+ D ++
Sbjct: 64 DPNKKYNIFYLMHGGGENENTIFSNDVKL 92
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 25.1 bits (56), Expect = 2.9
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 62 DITLKRKKTKKKKKKKKK 79
D+T K+K + +K+ KK+
Sbjct: 562 DVTRKKKLLENQKEGKKR 579
>3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A
{Pseudoalteromonas haloplanktis}
Length = 280
Score = 24.9 bits (54), Expect = 3.4
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 16 QKYPVLIYIHG 26
K PVL ++ G
Sbjct: 43 NKVPVLYWLSG 53
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune
system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 25.0 bits (54), Expect = 3.5
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 19 PVLIYIHGESFEWNSGNPYDGRI 41
++ ++HGE + Y R
Sbjct: 46 NIIQFVHGEEDLKVQHSSYRQRA 68
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 24.7 bits (54), Expect = 4.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 60 LVDITLKRKKTKKKKKKKKKK 80
L+ + RK KKKKKK K
Sbjct: 364 LLQSSASRKTQKKKKKKASKT 384
>3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR
structure initiative, midwest center for structural
genomic hydrolase; HET: MSE; 1.75A {Oleispira
antarctica} PDB: 3s8y_A
Length = 280
Score = 24.9 bits (54), Expect = 4.4
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 16 QKYPVLIYIHG 26
K PVL ++ G
Sbjct: 45 AKVPVLYWLSG 55
>3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family,
catalytic triad, kinetics, proposed reaction mechanism;
HET: MSE; 2.01A {Agrobacterium tumefaciens}
Length = 278
Score = 24.6 bits (53), Expect = 5.0
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 16 QKYPVLIYIHG 26
+ PV+ Y+ G
Sbjct: 42 EPCPVVWYLSG 52
>3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma,
genetic marker, cytoplasm, cytoplasmic vesicle,
polymorphism, serine esterase; 1.50A {Homo sapiens}
Length = 282
Score = 24.6 bits (53), Expect = 5.3
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 16 QKYPVLIYIHG 26
K P L ++ G
Sbjct: 43 GKCPALYWLSG 53
>3owq_A LIN1025 protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG, unknown FUN; 2.61A {Listeria innocua}
PDB: 3nro_A
Length = 321
Score = 24.3 bits (53), Expect = 5.5
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 64 TLKRKKTKKKKKKKKKKIL 82
T R +TK+KK K++
Sbjct: 2 TETRTETKQKKPSTFTKVM 20
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine
biosynthesis, ATP-binding, nucleotide-binding, OPPF,
PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Length = 255
Score = 24.1 bits (52), Expect = 6.4
Identities = 10/53 (18%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 12 GQPLQKYP-VLIYIHGESFEWNSGNPYDGRILASYADFV--VITLNYRLGVLV 61
++ Y VLI + G + +GN ++ + L A+ + ++ L + +++
Sbjct: 6 HHHMRPYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVI 58
>1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl
esterase, ferulic acid esterase, FAE_XYNZ, XYNZ,
structural genomics; 1.75A {Clostridium thermocellum}
SCOP: c.69.1.2 PDB: 1jt2_A*
Length = 268
Score = 24.0 bits (52), Expect = 7.8
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 13 QPLQKYPVLIYIHG 26
+KY VL +HG
Sbjct: 57 SKDKKYSVLYLLHG 70
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation,
ATP-binding, nucleotid binding, pyrimidine
biosynthesis, transferase; 2.34A {Xanthomonas
campestris PV} PDB: 3ek5_A
Length = 243
Score = 23.7 bits (51), Expect = 9.1
Identities = 6/44 (13%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 20 VLIYIHGESFEWNSGNPYDGRILASYADFV--VITLNYRLGVLV 61
+L+ + GE+ + D +++ A V ++ +++
Sbjct: 12 ILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVI 55
>2q1f_A Chondroitinase; alpha plus beta, lyase; 2.85A {Bacteroides
thetaiotaomicron}
Length = 1022
Score = 24.0 bits (51), Expect = 9.7
Identities = 7/59 (11%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 11 VGQPLQKYPVLIYIHGESFEWNSGNPYDGRILASYADFVVITLNYRLGVLVDITLKRKK 69
+ + PV + + G W ++++ V+ + G ++ L++ +
Sbjct: 961 IDNESGEIPVTVTLKGR---WKVVETPYCKVVSEDKKQTVLRFLCKDGASYEVELEKLE 1016
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 23.7 bits (51), Expect = 9.7
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 66 KRKKTKKKKKKKKKKILSQD 85
K +K+K+ +K LS+D
Sbjct: 56 KSLASKRKEDLQKITFLSRD 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.140 0.412
Gapped
Lambda K H
0.267 0.0586 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,382,595
Number of extensions: 74787
Number of successful extensions: 716
Number of sequences better than 10.0: 1
Number of HSP's gapped: 651
Number of HSP's successfully gapped: 106
Length of query: 85
Length of database: 6,701,793
Length adjustment: 53
Effective length of query: 32
Effective length of database: 5,221,980
Effective search space: 167103360
Effective search space used: 167103360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)