Query psy4018
Match_columns 136
No_of_seqs 102 out of 414
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:18:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k19_A Chemosensory protein CS 100.0 3.7E-52 1.3E-56 302.8 9.5 112 24-135 1-112 (112)
2 2gvs_A Chemosensory protein CS 100.0 3.6E-49 1.2E-53 285.9 10.1 105 24-128 1-107 (109)
3 2vfr_A Xylitol oxidase, aldito 82.8 0.66 2.3E-05 38.5 2.6 32 94-125 386-419 (422)
4 1sz9_A PCF11 protein; RNA poly 64.0 3.8 0.00013 29.6 2.3 63 61-129 77-139 (144)
5 2zs0_D Extracellular giant hem 63.5 8.9 0.0003 27.2 4.2 42 80-121 2-53 (145)
6 2e0i_A 432AA long hypothetical 61.5 2.3 7.7E-05 36.0 0.8 22 107-128 370-391 (440)
7 1x9f_D Globin C, hemoglobin ch 61.4 7.3 0.00025 27.0 3.4 31 81-111 2-39 (140)
8 1np7_A DNA photolyase; protein 61.3 2.1 7.1E-05 36.4 0.5 21 107-127 417-437 (489)
9 1u3d_A Cryptochrome 1 apoprote 59.6 2.4 8.1E-05 36.3 0.6 21 107-127 422-442 (509)
10 1owl_A Photolyase, deoxyribodi 59.2 2.4 8.1E-05 36.1 0.5 21 107-127 411-431 (484)
11 2a2u_A Protein (alpha-2U-globu 58.8 2.8 9.6E-05 29.8 0.8 34 6-40 1-35 (181)
12 1dnp_A DNA photolyase; DNA rep 58.5 2.5 8.6E-05 35.9 0.5 22 107-128 404-425 (471)
13 2km4_A Regulator of TY1 transp 58.2 11 0.00038 26.8 3.9 37 60-96 77-113 (142)
14 2j4d_A Cryptochrome 3, cryptoc 58.1 3.1 0.00011 35.8 1.1 22 107-128 453-474 (525)
15 2zs0_A Extracellular giant hem 58.0 8.5 0.00029 26.8 3.2 31 81-111 2-39 (140)
16 2zs0_C Extracellular giant hem 57.8 8.7 0.0003 26.9 3.3 32 80-111 3-43 (147)
17 1yhu_D Hemoglobin B2 chain; gl 55.6 11 0.00037 26.5 3.5 33 79-111 2-43 (149)
18 2j07_A Deoxyribodipyrimidine p 55.6 4.4 0.00015 33.8 1.6 21 107-127 373-393 (420)
19 2wq7_A RE11660P; lyase-DNA com 54.7 2.8 9.4E-05 36.3 0.2 20 108-127 452-471 (543)
20 4feh_A Oxidoreductase DPRE1; a 54.6 5.1 0.00018 34.1 1.9 31 95-125 446-478 (481)
21 3fy4_A 6-4 photolyase; DNA rep 53.8 3.3 0.00011 36.0 0.5 20 108-127 428-447 (537)
22 1yhu_A Hemoglobin A1 chain; gl 51.9 13 0.00044 26.1 3.4 31 81-111 2-39 (145)
23 1yhu_B Giant hemoglobins B cha 45.1 15 0.00053 25.3 2.9 40 80-120 3-50 (144)
24 2zs0_B Extracellular giant hem 44.0 24 0.00081 24.4 3.7 31 81-111 2-39 (142)
25 3clj_A Protein NRD1; CTD-inter 43.9 13 0.00043 27.6 2.3 41 57-97 88-128 (157)
26 3tvs_A Cryptochrome-1; circadi 43.3 3.1 0.00011 36.1 -1.3 20 108-127 443-462 (538)
27 1yhu_C Hemoglobin B1A chain; g 42.9 23 0.00077 24.7 3.5 33 79-111 2-44 (148)
28 1x9f_B Erythrocruorin, globin 42.7 22 0.00075 24.7 3.4 20 80-99 3-22 (145)
29 2aze_A Transcription factor DP 42.7 8.8 0.0003 28.7 1.3 29 48-76 108-137 (155)
30 2aao_A CDPK, calcium-dependent 42.1 29 0.001 23.1 3.9 51 80-130 5-58 (166)
31 2i0k_A Oxidoreductase; MIX alp 41.6 9.4 0.00032 33.0 1.5 24 102-125 536-559 (561)
32 2wh0_Q Pkcev3, protein kinase 40.2 17 0.00059 19.7 1.9 20 56-75 8-27 (31)
33 1x4o_A Splicing factor 4; stru 39.4 75 0.0026 20.4 5.9 44 83-126 15-68 (78)
34 2dt7_B Splicing factor 3 subun 38.9 82 0.0028 20.8 6.0 46 82-127 28-82 (85)
35 2e60_A SFRS8 protein, splicing 37.5 95 0.0032 21.1 7.0 30 82-111 24-53 (101)
36 4fu3_A Regulation of nuclear P 36.4 10 0.00036 26.2 0.8 39 60-98 75-113 (135)
37 1x9f_C Erythrocruorin, globin 35.2 33 0.0011 24.0 3.3 32 80-111 6-47 (153)
38 2bvf_A 6-hydroxy-D-nicotine ox 34.3 15 0.00053 30.5 1.6 15 104-118 435-449 (459)
39 3js8_A Cholesterol oxidase; ch 31.0 18 0.0006 31.7 1.5 25 101-125 514-538 (540)
40 2x1d_A Acyl-coenzyme A\:6-amin 30.0 85 0.0029 24.6 5.3 38 74-111 36-73 (357)
41 3n54_B Spore germination prote 29.9 10 0.00035 30.3 -0.2 49 63-111 273-325 (350)
42 3g06_A SSPH2 (leucine-rich rep 29.6 22 0.00076 30.9 1.9 37 94-130 544-582 (622)
43 3eq5_A SKI-like protein; TGF-b 29.2 40 0.0014 24.3 2.8 15 73-87 76-90 (125)
44 3c5t_B Exendin-4, exenatide; l 28.0 40 0.0014 18.6 2.1 17 85-101 7-23 (31)
45 1zr6_A Glucooligosaccharide ox 27.4 22 0.00075 30.1 1.4 15 104-118 457-471 (503)
46 2kav_A Sodium channel protein 27.3 27 0.00094 25.0 1.7 16 103-118 44-59 (129)
47 3k2z_A LEXA repressor; winged 27.2 99 0.0034 22.3 4.9 49 82-130 4-53 (196)
48 3umv_A Deoxyribodipyrimidine p 27.0 20 0.00068 30.8 1.1 21 107-127 466-488 (506)
49 1kpt_A KP4 toxin; killer toxin 26.6 36 0.0012 23.7 2.2 29 54-82 54-82 (105)
50 1lba_A T7 lysozyme; hydrolase( 26.4 41 0.0014 23.7 2.5 22 81-102 91-112 (146)
51 2a7o_A Huntingtin interacting 25.3 1.2E+02 0.0041 21.4 4.7 54 51-104 41-103 (112)
52 3tsh_A Pollen allergen PHL P 4 25.2 28 0.00095 29.3 1.6 14 105-118 475-488 (500)
53 1sct_A Hemoglobin II (carbonmo 23.8 55 0.0019 22.7 2.8 19 81-99 10-29 (150)
54 3r8n_O 30S ribosomal protein S 23.6 82 0.0028 21.1 3.5 22 90-111 63-84 (88)
55 1x9f_A Globin IV, extracellula 23.4 71 0.0024 22.2 3.4 20 81-100 7-26 (151)
56 1y8m_A FIS1; mitochondria, unk 23.3 93 0.0032 22.6 4.0 37 40-76 90-126 (144)
57 2vqe_O 30S ribosomal protein S 23.2 75 0.0026 21.3 3.2 23 89-111 63-85 (89)
58 1j2m_A CPI-17, 17-kDa PKC-pote 22.6 65 0.0022 22.3 2.9 30 33-62 53-84 (99)
59 3rja_A Carbohydrate oxidase; p 22.6 31 0.001 29.1 1.4 15 104-118 450-464 (473)
60 1a32_A Ribosomal protein S15; 22.2 81 0.0028 21.1 3.2 22 90-111 63-84 (88)
61 2wdx_A Putative hexose oxidase 21.8 29 0.001 29.6 1.1 15 104-118 502-516 (523)
62 3mkh_A Nitroalkane oxidase; ox 21.4 1.1E+02 0.0038 24.6 4.5 54 82-135 8-67 (438)
63 2y3s_A TAML; oxidoreductase; H 21.4 30 0.001 29.6 1.1 15 104-118 506-520 (530)
64 3u5s_A FAD-linked sulfhydryl o 21.2 2E+02 0.0069 19.9 5.4 44 81-124 42-90 (126)
65 2ipi_A Aclacinomycin oxidoredu 20.9 31 0.0011 29.4 1.1 15 104-118 498-512 (521)
66 2l63_A GLP-2, glucagon-like pe 20.8 71 0.0024 17.8 2.3 18 85-102 15-32 (33)
67 4a5u_B 30S ribosomal protein S 20.4 91 0.0031 20.8 3.2 23 89-111 62-84 (88)
68 3khe_A Calmodulin-like domain 20.4 1.4E+02 0.0049 20.0 4.4 40 77-116 14-54 (191)
69 2pjp_A Selenocysteine-specific 20.3 31 0.001 23.4 0.8 51 82-133 2-52 (121)
70 3k21_A PFCDPK3, calcium-depend 20.2 64 0.0022 22.6 2.5 47 85-131 35-84 (191)
No 1
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A
Probab=100.00 E-value=3.7e-52 Score=302.80 Aligned_cols=112 Identities=45% Similarity=0.889 Sum_probs=109.7
Q ss_pred CCccCCcCccCCHHHHhcCHHHHHHHhhhhcCCCCCChhHHHHHhhhHHHHHhcCccCCHHHHhhHHHHHHHHHhcChHH
Q psy4018 24 GEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQ 103 (136)
Q Consensus 24 ~~~Y~~~~D~iDid~iL~N~rl~~~y~~ClLdkgpCt~~gk~lK~~lpeal~t~C~KCT~kQK~~~~kvi~~l~~~~P~~ 103 (136)
++.|+++||||||++||+|+||+++|++||||+|||||+|++||++|||||+|+|+||||+||+++++|++||++|+|++
T Consensus 1 ee~Yt~kyDniDvd~IL~n~rll~~y~~Clld~gpCtpegk~lK~~lpeAl~t~C~KCTekQK~~~~kvi~~l~~n~P~~ 80 (112)
T 1k19_A 1 EDKYTDKYDNINLDEILANKRLLVAYVNCVMERGKCSPEGKELKEHLQDAIENGCKKCTENQEKGAYRVIEHLIKNEIEI 80 (112)
T ss_dssp CCCCCSSSSCSSHHHHHSCHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHTTTTCTTSCSHHHHHHHHHHHHHHHHHSCH
T ss_pred CCcccccccccCHHHHHcCHHHHHHHHhHHhcCCCCCHHHHHHHHHhHHHHhccCCCCCHHHHHHHHHHHHHHHHcChHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCChhhHHHHHHHHhhcCCCCCCC
Q psy4018 104 WAELEKKFDPNGTYKAKYQKELSDLKAGKPVK 135 (136)
Q Consensus 104 w~~l~~KyDP~~~y~~~~~~~l~~~~~~~~~~ 135 (136)
|++|++||||+|+|+++|++++++.|+.+|++
T Consensus 81 W~~L~~KyDP~g~y~~~y~~~~~~~g~~~~~~ 112 (112)
T 1k19_A 81 WRELTAKYDPTGNWRKKYEDRAKAAGIVIPEE 112 (112)
T ss_dssp HHHHHHSSTTTCSSHHHHHHHHHHHCCCCCCC
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999999985
No 2
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria}
Probab=100.00 E-value=3.6e-49 Score=285.89 Aligned_cols=105 Identities=57% Similarity=1.086 Sum_probs=101.6
Q ss_pred CCccCCcCccCCHHHHhcCHHHHHHHhhhhcCCC--CCChhHHHHHhhhHHHHHhcCccCCHHHHhhHHHHHHHHHhcCh
Q psy4018 24 GEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKG--KCSPDGQELKNKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKP 101 (136)
Q Consensus 24 ~~~Y~~~~D~iDid~iL~N~rl~~~y~~ClLdkg--pCt~~gk~lK~~lpeal~t~C~KCT~kQK~~~~kvi~~l~~~~P 101 (136)
++.|+++||||||++||+|+||+++|++||||+| ||||+|++||++|||||+|+|+||||+||+++++|++||++|+|
T Consensus 1 ee~Yt~kyDniDvd~IL~n~rll~~y~~Clld~g~~pCtpegk~lK~~lpeAl~t~C~KCTekQK~~~~kvi~~l~~n~P 80 (109)
T 2gvs_A 1 EEKYTTKYDNVNLDEILANDRLLNKYVQCLLEDDESNCTADGKELKSVIPDALSNECAKCNEKQKEGTKKVLKHLINHKP 80 (109)
T ss_dssp CCCCCSCSSSCCHHHHHHCHHHHHHHHHHHHSSCCTTCCTTHHHHHHHTTHHHHSTTTTSCHHHHHHHHHHHHHHHHHCH
T ss_pred CCcccccccccCHHHHHcCHHHHHHHHhHHhcCCCCCCCHHHHHHHHHhHHHHhccCCCCCHHHHHHHHHHHHHHHHcCh
Confidence 3579999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCChhhHHHHHHHHhhc
Q psy4018 102 EQWAELEKKFDPNGTYKAKYQKELSDL 128 (136)
Q Consensus 102 ~~w~~l~~KyDP~~~y~~~~~~~l~~~ 128 (136)
++|++|++||||+|+|+++|++++++.
T Consensus 81 ~~W~~L~~KyDP~g~y~~ky~~~~~~~ 107 (109)
T 2gvs_A 81 DVWAQLKAKYDPDGTYSKKYEDREKEL 107 (109)
T ss_dssp HHHHHHHHHHCTTCTTTHHHHTTTCCS
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHc
Confidence 999999999999999999999988653
No 3
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=82.82 E-value=0.66 Score=38.50 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=26.9
Q ss_pred HHHHhcCh--HHHHHHHHhhCCChhhHHHHHHHH
Q psy4018 94 KYLIDNKP--EQWAELEKKFDPNGTYKAKYQKEL 125 (136)
Q Consensus 94 ~~l~~~~P--~~w~~l~~KyDP~~~y~~~~~~~l 125 (136)
+.+.+.|| +.|.++.++|||+|.+...|.+.+
T Consensus 386 ~~~~~~Yp~~~~f~~vk~~~DP~g~f~n~~~~r~ 419 (422)
T 2vfr_A 386 GELRALYPRLADFGALAGALDPAGKFTNAFVRGV 419 (422)
T ss_dssp HHHHTTCTTHHHHHHHHHHHCTTCTTCCHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHhCCCCccCCHHHHHh
Confidence 56777888 589999999999999998886654
No 4
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=64.03 E-value=3.8 Score=29.61 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=44.7
Q ss_pred hhHHHHHhhhHHHHHhcCccCCHHHHhhHHHHHHHHHhcChHHHHHHHHhhCCChhhHHHHHHHHhhcC
Q psy4018 61 PDGQELKNKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKELSDLK 129 (136)
Q Consensus 61 ~~gk~lK~~lpeal~t~C~KCT~kQK~~~~kvi~~l~~~~P~~w~~l~~KyDP~~~y~~~~~~~l~~~~ 129 (136)
+-...|-..||+++...-..+.+.+|..+.++++.-.+..|.. ..-|.| ....+++.+|.+.+
T Consensus 77 ~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~~~~~----~~vF~~--~~l~~i~~~l~~a~ 139 (144)
T 1sz9_A 77 PYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTG----LPLFEG--SALEKIEQFLIKAS 139 (144)
T ss_dssp THHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSGGGCS----SCSSCH--HHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCcccCC----CCCCCH--HHHHHHHHHHHhhh
Confidence 3467888889999988878889999999999999877664432 223333 34555666665544
No 5
>2zs0_D Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2zfo_D* 2zs1_D* 2d2m_D* 2d2n_D*
Probab=63.50 E-value=8.9 Score=27.21 Aligned_cols=42 Identities=7% Similarity=-0.006 Sum_probs=32.6
Q ss_pred cCCHHHHhhHHHHHHHHHhcC----------hHHHHHHHHhhCCChhhHHHH
Q psy4018 80 SCSEKQKEGSKKIFKYLIDNK----------PEQWAELEKKFDPNGTYKAKY 121 (136)
Q Consensus 80 KCT~kQK~~~~kvi~~l~~~~----------P~~w~~l~~KyDP~~~y~~~~ 121 (136)
-||+.||..++..-.-+..+. .+.|..|...|=-...|+..|
T Consensus 2 ~cs~~e~~~V~~sW~~v~~~~~~~~~~~~~g~~~~~rlF~~~P~~k~~F~~~ 53 (145)
T 2zs0_D 2 CCSRGDAEVVISEWDQVFNAAMAGSSESAIGVAIFDVFFTSSGVSPSMFPGG 53 (145)
T ss_dssp TTCHHHHHHHHHHHHHHTCTTTTTTSHHHHHHHHHHHHHHHHCCCGGGSGGG
T ss_pred CCCHHHHHHHHHHHHHHHccccccchHHHHHHHHHHHHHHHCHHHHHhcccC
Confidence 599999999999999998776 778888888883334455544
No 6
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=61.49 E-value=2.3 Score=36.00 Aligned_cols=22 Identities=32% Similarity=0.714 Sum_probs=18.9
Q ss_pred HHHhhCCChhhHHHHHHHHhhc
Q psy4018 107 LEKKFDPNGTYKAKYQKELSDL 128 (136)
Q Consensus 107 l~~KyDP~~~y~~~~~~~l~~~ 128 (136)
-.+||||+|+|.++|.-+|+..
T Consensus 370 q~~kfDp~g~yIr~wvPeL~~~ 391 (440)
T 2e0i_A 370 QQEKFDPEAKFIKEWVEELKDV 391 (440)
T ss_dssp HHHHHCTTCHHHHHHCGGGGGS
T ss_pred HHHHhCCCcHhHHHhCHHhhcc
Confidence 4689999999999998887663
No 7
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=61.43 E-value=7.3 Score=27.00 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=21.6
Q ss_pred CCHHHHhhHHHHHHHHHhc-------ChHHHHHHHHhh
Q psy4018 81 CSEKQKEGSKKIFKYLIDN-------KPEQWAELEKKF 111 (136)
Q Consensus 81 CT~kQK~~~~kvi~~l~~~-------~P~~w~~l~~Ky 111 (136)
||+.||..++....-+..+ =++.|..|...|
T Consensus 2 cs~~~~~~V~~sw~~v~~~~~~~~~~g~~~~~~lF~~~ 39 (140)
T 1x9f_D 2 CLVTESLKVKLQWASAFGHAHERVAFGLELWRDIIDDH 39 (140)
T ss_dssp CCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhC
Confidence 8888888888888887766 334455555554
No 8
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=61.31 E-value=2.1 Score=36.37 Aligned_cols=21 Identities=33% Similarity=0.735 Sum_probs=17.7
Q ss_pred HHHhhCCChhhHHHHHHHHhh
Q psy4018 107 LEKKFDPNGTYKAKYQKELSD 127 (136)
Q Consensus 107 l~~KyDP~~~y~~~~~~~l~~ 127 (136)
-.+||||+|+|.++|--+|+.
T Consensus 417 q~~kfDp~g~yIr~wvPeL~~ 437 (489)
T 1np7_A 417 QSQQYDPQGTYLRHWLPELKN 437 (489)
T ss_dssp HHHHHSTTSHHHHHHCGGGTT
T ss_pred HhhhcCCCCccHHHhCHHhhc
Confidence 347999999999999877765
No 9
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=59.64 E-value=2.4 Score=36.27 Aligned_cols=21 Identities=48% Similarity=0.741 Sum_probs=17.6
Q ss_pred HHHhhCCChhhHHHHHHHHhh
Q psy4018 107 LEKKFDPNGTYKAKYQKELSD 127 (136)
Q Consensus 107 l~~KyDP~~~y~~~~~~~l~~ 127 (136)
-.+||||+|.|.++|--+|+.
T Consensus 422 Q~~kfDp~G~yIrrwvPEL~~ 442 (509)
T 1u3d_A 422 EGYKFDPNGEYVRRWLPELSR 442 (509)
T ss_dssp HHHHHCTTSHHHHHHCGGGTT
T ss_pred HHHhcCCCchhHHHhCHHhhc
Confidence 357999999999999877765
No 10
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=59.17 E-value=2.4 Score=36.07 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=17.8
Q ss_pred HHHhhCCChhhHHHHHHHHhh
Q psy4018 107 LEKKFDPNGTYKAKYQKELSD 127 (136)
Q Consensus 107 l~~KyDP~~~y~~~~~~~l~~ 127 (136)
-.+||||+|.|.++|.-+|+.
T Consensus 411 q~~kfDp~g~yIr~wvPeL~~ 431 (484)
T 1owl_A 411 QAKKFDATATYIKRWLPELRH 431 (484)
T ss_dssp HHHHHSTTCHHHHHHCGGGTT
T ss_pred HhhhcCCCchhHHHhChhhhc
Confidence 468999999999999877765
No 11
>2a2u_A Protein (alpha-2U-globulin); lipid binding protein; 2.50A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 2a2g_A
Probab=58.76 E-value=2.8 Score=29.80 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=9.5
Q ss_pred HHH-HHHHHHHHHHhhccCCCccCCcCccCCHHHHh
Q psy4018 6 SAA-VGLFLAVQLVAGKPAGEKYTTKYDNVDLDQIL 40 (136)
Q Consensus 6 MK~-~i~l~~~~~~~~~~a~~~Y~~~~D~iDid~iL 40 (136)
||+ +++|+++++++++.+.+. ...-+|+|+++++
T Consensus 1 Mk~~~llL~l~l~L~~a~~~~~-~~~~~~fd~~r~~ 35 (181)
T 2a2u_A 1 MKLLLLLLCLGLTLVCGHAEEA-SSTRGNLDVAKLN 35 (181)
T ss_dssp -------------------CCB-CTTTTCCCGGGGC
T ss_pred CchhhHHHHHHHHHHhhccccc-CccccCCCcceee
Confidence 663 333333333443333322 3456788888753
No 12
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=58.50 E-value=2.5 Score=35.90 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=18.4
Q ss_pred HHHhhCCChhhHHHHHHHHhhc
Q psy4018 107 LEKKFDPNGTYKAKYQKELSDL 128 (136)
Q Consensus 107 l~~KyDP~~~y~~~~~~~l~~~ 128 (136)
-.+||||+|.|.++|.-+|+..
T Consensus 404 q~~kfDp~G~YIrrwvPeL~~~ 425 (471)
T 1dnp_A 404 QGEKFDHEGEFIRQWLPELRDV 425 (471)
T ss_dssp HHHHHTTTCHHHHHHCGGGTTS
T ss_pred HHHhcCCCchhHHHhChhhccC
Confidence 4689999999999998777653
No 13
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=58.18 E-value=11 Score=26.78 Aligned_cols=37 Identities=5% Similarity=0.056 Sum_probs=32.8
Q ss_pred ChhHHHHHhhhHHHHHhcCccCCHHHHhhHHHHHHHH
Q psy4018 60 SPDGQELKNKLPDAIATECKSCSEKQKEGSKKIFKYL 96 (136)
Q Consensus 60 t~~gk~lK~~lpeal~t~C~KCT~kQK~~~~kvi~~l 96 (136)
++-...|..+||+++......+.++.+..+.++++.-
T Consensus 77 ~~f~~~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iW 113 (142)
T 2km4_A 77 IQFQDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNIL 113 (142)
T ss_dssp CHHHHHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3557899999999999998889999999999999875
No 14
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=58.11 E-value=3.1 Score=35.80 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=18.8
Q ss_pred HHHhhCCChhhHHHHHHHHhhc
Q psy4018 107 LEKKFDPNGTYKAKYQKELSDL 128 (136)
Q Consensus 107 l~~KyDP~~~y~~~~~~~l~~~ 128 (136)
-.++|||+|.|.++|--+|+..
T Consensus 453 q~kk~Dp~G~YIrrwvPEL~~~ 474 (525)
T 2j4d_A 453 QAQNYDPEGEYVAFWLQQLRRL 474 (525)
T ss_dssp HHHHHCTTCHHHHHHSGGGTTS
T ss_pred HhhhcCCCchhHHHhChhhhcC
Confidence 4789999999999998887664
No 15
>2zs0_A Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_A* 2d2m_A* 2zfo_A* 2zs1_A*
Probab=57.99 E-value=8.5 Score=26.78 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=23.0
Q ss_pred CCHHHHhhHHHHHHHHHhc---Ch----HHHHHHHHhh
Q psy4018 81 CSEKQKEGSKKIFKYLIDN---KP----EQWAELEKKF 111 (136)
Q Consensus 81 CT~kQK~~~~kvi~~l~~~---~P----~~w~~l~~Ky 111 (136)
||+.||..++..-.-+..+ .. +.|..|...|
T Consensus 2 cs~~~~~~v~~sW~~v~~~~~~~~~~g~~~y~rlF~~~ 39 (140)
T 2zs0_A 2 CNRLEQILVKTQWAQSYGEAENRAAFSRDLFSELFNIQ 39 (140)
T ss_dssp CCHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHC
Confidence 9999999999988888776 44 4555555555
No 16
>2zs0_C Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_C* 2d2m_C* 2zfo_C* 2zs1_C*
Probab=57.80 E-value=8.7 Score=26.94 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=25.2
Q ss_pred cCCHHHHhhHHHHHHHHHhcC---------hHHHHHHHHhh
Q psy4018 80 SCSEKQKEGSKKIFKYLIDNK---------PEQWAELEKKF 111 (136)
Q Consensus 80 KCT~kQK~~~~kvi~~l~~~~---------P~~w~~l~~Ky 111 (136)
-||+.||..++....-+..+. ++.|..|...|
T Consensus 3 ~~s~~~~~~v~~sw~~v~~~~~~~~~~~~g~~~~~rlF~~~ 43 (147)
T 2zs0_C 3 CCSSEDRANVMHNWDAAWSAAYSDRRVALAQAVFASLFSRD 43 (147)
T ss_dssp CCCHHHHHHHHHHHHHHCCSSCSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHC
Confidence 489999999999988887777 56666666666
No 17
>1yhu_D Hemoglobin B2 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=55.59 E-value=11 Score=26.48 Aligned_cols=33 Identities=9% Similarity=0.276 Sum_probs=25.6
Q ss_pred ccCCHHHHhhHHHHHHHHHhcC---------hHHHHHHHHhh
Q psy4018 79 KSCSEKQKEGSKKIFKYLIDNK---------PEQWAELEKKF 111 (136)
Q Consensus 79 ~KCT~kQK~~~~kvi~~l~~~~---------P~~w~~l~~Ky 111 (136)
+-||+.||..++....-+..+. ++.|..|...|
T Consensus 2 ~~~s~~~~~~v~~sw~~v~~~~~~~~~~~~g~~~y~rlF~~~ 43 (149)
T 1yhu_D 2 ASCTTEDRREMQLMWGNVWSAQFTGRRIAIAQAVFKDLFANV 43 (149)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSSCSHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHC
Confidence 3589999999999888887776 66666666666
No 18
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=55.57 E-value=4.4 Score=33.81 Aligned_cols=21 Identities=19% Similarity=0.526 Sum_probs=17.5
Q ss_pred HHHhhCCChhhHHHHHHHHhh
Q psy4018 107 LEKKFDPNGTYKAKYQKELSD 127 (136)
Q Consensus 107 l~~KyDP~~~y~~~~~~~l~~ 127 (136)
-.+||||+|+|.++|.-+|+.
T Consensus 373 q~~kfDp~g~yir~w~pel~~ 393 (420)
T 2j07_A 373 QGERHDPEGRWLKRWAPEYPS 393 (420)
T ss_dssp HHHHHSTTSHHHHHHCTTCSS
T ss_pred HHHHhCCCchhHHHhChhhcC
Confidence 478999999999999766654
No 19
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=54.70 E-value=2.8 Score=36.29 Aligned_cols=20 Identities=55% Similarity=0.783 Sum_probs=17.0
Q ss_pred HHhhCCChhhHHHHHHHHhh
Q psy4018 108 EKKFDPNGTYKAKYQKELSD 127 (136)
Q Consensus 108 ~~KyDP~~~y~~~~~~~l~~ 127 (136)
.+||||+|+|.++|.-+|+.
T Consensus 452 ~~kfDp~g~yIr~wvPEL~~ 471 (543)
T 2wq7_A 452 GKKTDPQGHYIRKYVPELSK 471 (543)
T ss_dssp GGGTCTTCHHHHHHSGGGTT
T ss_pred hhhcCCCchhHHHhCHHhhc
Confidence 46999999999999877755
No 20
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A
Probab=54.55 E-value=5.1 Score=34.13 Aligned_cols=31 Identities=19% Similarity=0.521 Sum_probs=24.1
Q ss_pred HHHhcCh--HHHHHHHHhhCCChhhHHHHHHHH
Q psy4018 95 YLIDNKP--EQWAELEKKFDPNGTYKAKYQKEL 125 (136)
Q Consensus 95 ~l~~~~P--~~w~~l~~KyDP~~~y~~~~~~~l 125 (136)
.+.+-|| ++|.++++.+||+|.+...|..-+
T Consensus 446 ~~~~~YP~~~~F~~lr~~~DP~g~F~n~~~rr~ 478 (481)
T 4feh_A 446 TFHAMYPRVDEWISVRRKVDPLRVFASDMARRL 478 (481)
T ss_dssp HHHHHCTTHHHHHHHHHHHCTTCCBCCHHHHHT
T ss_pred HHHHhCcCHHHHHHHHHhhCCccccCCHHHHhh
Confidence 4566777 568888899999999988886543
No 21
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=53.76 E-value=3.3 Score=36.02 Aligned_cols=20 Identities=40% Similarity=0.790 Sum_probs=17.0
Q ss_pred HHhhCCChhhHHHHHHHHhh
Q psy4018 108 EKKFDPNGTYKAKYQKELSD 127 (136)
Q Consensus 108 ~~KyDP~~~y~~~~~~~l~~ 127 (136)
.+||||+|.|.++|--+|+.
T Consensus 428 ~~kfDp~G~yIr~wvPEL~~ 447 (537)
T 3fy4_A 428 GKKYDPDGKYIRHFLPVLKD 447 (537)
T ss_dssp GGGTCTTCHHHHHHCGGGTT
T ss_pred HHHhCCCchHHHHhCHhhcC
Confidence 35999999999999877765
No 22
>1yhu_A Hemoglobin A1 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=51.93 E-value=13 Score=26.07 Aligned_cols=31 Identities=10% Similarity=0.149 Sum_probs=22.1
Q ss_pred CCHHHHhhHHHHHHHHHhc-------ChHHHHHHHHhh
Q psy4018 81 CSEKQKEGSKKIFKYLIDN-------KPEQWAELEKKF 111 (136)
Q Consensus 81 CT~kQK~~~~kvi~~l~~~-------~P~~w~~l~~Ky 111 (136)
||+.||..++....-+..+ =++.|..|...|
T Consensus 2 cs~~~~~~V~~sw~~v~~~~~~~~~~g~~~~~rlF~~~ 39 (145)
T 1yhu_A 2 CAMLERAKVKDEWAKAYGIGAARSKFGDALWRNVFNYA 39 (145)
T ss_dssp CCHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHcC
Confidence 8899999888888888776 334555555554
No 23
>1yhu_B Giant hemoglobins B chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=45.05 E-value=15 Score=25.26 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=25.5
Q ss_pred cCCHHHHhhHHHHHHHHHhc-------ChHHHHHHHHhhCCC-hhhHHH
Q psy4018 80 SCSEKQKEGSKKIFKYLIDN-------KPEQWAELEKKFDPN-GTYKAK 120 (136)
Q Consensus 80 KCT~kQK~~~~kvi~~l~~~-------~P~~w~~l~~KyDP~-~~y~~~ 120 (136)
-||+.||..++....-+..+ -.+.|..|...| |+ ..|+..
T Consensus 3 ~~s~~~~~~v~~sw~~v~~~~~~~~~~g~~~~~~lF~~~-P~~k~~F~~ 50 (144)
T 1yhu_B 3 VCGPLQRLKVKRQWAEAYGSGNSREEFGHFIWSHVFQHS-PAARDMFKR 50 (144)
T ss_dssp CCCHHHHHHHHHHHHHHTCSSSTHHHHHHHHHHHHHHHC-GGGGGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHC-hHHHHhccc
Confidence 48888988888888888765 344455555554 44 334443
No 24
>2zs0_B Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_B* 2d2m_B* 2zfo_B* 2zs1_B*
Probab=43.98 E-value=24 Score=24.38 Aligned_cols=31 Identities=13% Similarity=0.315 Sum_probs=23.1
Q ss_pred CCHHHHhhHHHHHHHHHhc---C----hHHHHHHHHhh
Q psy4018 81 CSEKQKEGSKKIFKYLIDN---K----PEQWAELEKKF 111 (136)
Q Consensus 81 CT~kQK~~~~kvi~~l~~~---~----P~~w~~l~~Ky 111 (136)
||+.||..++....-+..+ . ++.|..|...|
T Consensus 2 cs~~~~~~v~~sw~~v~~~~~~~~~~g~~~~~rlF~~~ 39 (142)
T 2zs0_B 2 CTSLNRLLVKRQWAEAYGEGTNRELLGNRIWEDLFANM 39 (142)
T ss_dssp CCHHHHHHHHHHHHHHHSSSTTHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhC
Confidence 9999999999988888776 2 44555555555
No 25
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=43.88 E-value=13 Score=27.64 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=30.4
Q ss_pred CCCChhHHHHHhhhHHHHHhcCccCCHHHHhhHHHHHHHHH
Q psy4018 57 GKCSPDGQELKNKLPDAIATECKSCSEKQKEGSKKIFKYLI 97 (136)
Q Consensus 57 gpCt~~gk~lK~~lpeal~t~C~KCT~kQK~~~~kvi~~l~ 97 (136)
|.+++.-..+.+++|..+...=..|.+.||..++++++.-+
T Consensus 88 gt~a~~v~~~~e~i~~l~~~~~~~~~~~~k~Ki~klldiW~ 128 (157)
T 3clj_A 88 GTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWD 128 (157)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 44555445677888877776555679999999999997644
No 26
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=43.31 E-value=3.1 Score=36.14 Aligned_cols=20 Identities=45% Similarity=0.873 Sum_probs=16.7
Q ss_pred HHhhCCChhhHHHHHHHHhh
Q psy4018 108 EKKFDPNGTYKAKYQKELSD 127 (136)
Q Consensus 108 ~~KyDP~~~y~~~~~~~l~~ 127 (136)
.+||||+|+|.++|--+|+.
T Consensus 443 ~~kfDp~G~YIrrwvPEL~~ 462 (538)
T 3tvs_A 443 AKRLDPDGTYIKQYVPELMN 462 (538)
T ss_dssp HHHSCTTCTTGGGTCGGGSS
T ss_pred HHHhCCCcchHHHhChhhcC
Confidence 47999999999999776654
No 27
>1yhu_C Hemoglobin B1A chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=42.93 E-value=23 Score=24.73 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=22.9
Q ss_pred ccCCHHHHhhHHHHHHHHHhcC----------hHHHHHHHHhh
Q psy4018 79 KSCSEKQKEGSKKIFKYLIDNK----------PEQWAELEKKF 111 (136)
Q Consensus 79 ~KCT~kQK~~~~kvi~~l~~~~----------P~~w~~l~~Ky 111 (136)
+.||+.||..++....-+..+. ++.|..|...|
T Consensus 2 ~~ls~~~~~~v~~sw~~v~~~~~~~~~~~~~g~~~y~rlF~~~ 44 (148)
T 1yhu_C 2 ANCADAAAAIVQAQWEDVWSAAAAAASRVSAGEEVFAALFKMV 44 (148)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHC
Confidence 3578888888888877776666 55566666555
No 28
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=42.74 E-value=22 Score=24.66 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=15.0
Q ss_pred cCCHHHHhhHHHHHHHHHhc
Q psy4018 80 SCSEKQKEGSKKIFKYLIDN 99 (136)
Q Consensus 80 KCT~kQK~~~~kvi~~l~~~ 99 (136)
-||+.||..++....-+..+
T Consensus 3 ~~s~~~~~~V~~sw~~v~~~ 22 (145)
T 1x9f_B 3 QCGVLEGLKVKSEWGRAYGS 22 (145)
T ss_dssp CCCHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHHcc
Confidence 47888888888777777655
No 29
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=42.72 E-value=8.8 Score=28.69 Aligned_cols=29 Identities=24% Similarity=0.475 Sum_probs=23.2
Q ss_pred HHhhhhcCCCCCChh-HHHHHhhhHHHHHh
Q psy4018 48 NYYNCLLDKGKCSPD-GQELKNKLPDAIAT 76 (136)
Q Consensus 48 ~y~~ClLdkgpCt~~-gk~lK~~lpeal~t 76 (136)
-.+.|=|++|.||++ .+..|.++|.+++.
T Consensus 108 mgl~~gle~g~cs~e~l~~~ks~vP~~l~~ 137 (155)
T 2aze_A 108 MGMACGLESGSCSAEDLKMARSLVPKALEP 137 (155)
T ss_dssp TTTTTTGGGTCCCHHHHHHHHHTSCGGGHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHhCChhhhh
Confidence 344588999999998 66778999988764
No 30
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=42.09 E-value=29 Score=23.10 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=29.7
Q ss_pred cCCHHHHhhHHHHHHHHHhcChHHHHHHHHhhCCChh---hHHHHHHHHhhcCC
Q psy4018 80 SCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGT---YKAKYQKELSDLKA 130 (136)
Q Consensus 80 KCT~kQK~~~~kvi~~l~~~~P~~w~~l~~KyDP~~~---y~~~~~~~l~~~~~ 130 (136)
.|+.-|+..+..+...+.......|..+-..+|++|. =.+.|...+...|.
T Consensus 5 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~ 58 (166)
T 2aao_A 5 AMNKFKKMALRVIAESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGA 58 (166)
T ss_dssp -CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGGGTC
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCC
Confidence 3555566666666666665556667777777777653 23444444544443
No 31
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*
Probab=41.58 E-value=9.4 Score=33.02 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=20.3
Q ss_pred HHHHHHHHhhCCChhhHHHHHHHH
Q psy4018 102 EQWAELEKKFDPNGTYKAKYQKEL 125 (136)
Q Consensus 102 ~~w~~l~~KyDP~~~y~~~~~~~l 125 (136)
++|.++++++||+|.+...|.+.+
T Consensus 536 ~~f~~~r~~~DP~g~F~n~~~~rl 559 (561)
T 2i0k_A 536 DTARARYNQIDPHRVFTNGFMDKL 559 (561)
T ss_dssp HHHHHHHHHHCTTCCSCCHHHHHH
T ss_pred HHHHHHHHhcCCCCccCCHHHHHh
Confidence 579999999999999988886543
No 32
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=40.20 E-value=17 Score=19.75 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=16.3
Q ss_pred CCCCChhHHHHHhhhHHHHH
Q psy4018 56 KGKCSPDGQELKNKLPDAIA 75 (136)
Q Consensus 56 kgpCt~~gk~lK~~lpeal~ 75 (136)
.+||+.+-++|...|..|+.
T Consensus 8 tspcdqeikelennirkals 27 (31)
T 2wh0_Q 8 TSPCDQEIKELENNIRKALS 27 (31)
T ss_pred CCchHHHHHHHHHHHHHHhc
Confidence 47999999998888887764
No 33
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=39.45 E-value=75 Score=20.42 Aligned_cols=44 Identities=25% Similarity=0.356 Sum_probs=34.4
Q ss_pred HHHHhhHHHHHHHHHhcChHHHHHHHHhh----------CCChhhHHHHHHHHh
Q psy4018 83 EKQKEGSKKIFKYLIDNKPEQWAELEKKF----------DPNGTYKAKYQKELS 126 (136)
Q Consensus 83 ~kQK~~~~kvi~~l~~~~P~~w~~l~~Ky----------DP~~~y~~~~~~~l~ 126 (136)
+.++..++++..|+.+|=|+.=..+.++. ||++.|-.-|...+.
T Consensus 15 ~~~~~iIdktA~fVaknG~~fE~~l~~~~~~Np~F~FL~d~~~~~h~YYr~kl~ 68 (78)
T 1x4o_A 15 EEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLD 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHCSSTTTTTCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHHHHH
Confidence 57899999999999999999888888763 677766666654443
No 34
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=38.91 E-value=82 Score=20.75 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=37.5
Q ss_pred CHHHHhhHHHHHHHHHhcChHHHHHHHHhh---------CCChhhHHHHHHHHhh
Q psy4018 82 SEKQKEGSKKIFKYLIDNKPEQWAELEKKF---------DPNGTYKAKYQKELSD 127 (136)
Q Consensus 82 T~kQK~~~~kvi~~l~~~~P~~w~~l~~Ky---------DP~~~y~~~~~~~l~~ 127 (136)
|.++-..+++...|+.+|=++-|..|.++. .|++.|..-|...+.+
T Consensus 28 ~~kdl~iIk~TA~FVArnG~~Fe~~l~~re~~NpqF~FL~p~h~~~~yy~~~v~~ 82 (85)
T 2dt7_B 28 SAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQ 82 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhccHHHHHHHHHhcCCCCceeeCCCCCCchHHHHHHHHH
Confidence 678889999999999999999999999974 5667666666655544
No 35
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.51 E-value=95 Score=21.07 Aligned_cols=30 Identities=10% Similarity=0.024 Sum_probs=26.9
Q ss_pred CHHHHhhHHHHHHHHHhcChHHHHHHHHhh
Q psy4018 82 SEKQKEGSKKIFKYLIDNKPEQWAELEKKF 111 (136)
Q Consensus 82 T~kQK~~~~kvi~~l~~~~P~~w~~l~~Ky 111 (136)
+.+++..++++..|+.+|=|+.-..|..+-
T Consensus 24 ~~~~~~iI~ktA~fVarnG~~FE~~l~~re 53 (101)
T 2e60_A 24 TAKMHAIIERTASFVCRQGAQFEIMLKAKQ 53 (101)
T ss_dssp SHHHHHHHHHHHHHHHHSCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHHHHHHcc
Confidence 357999999999999999999999998874
No 36
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=36.38 E-value=10 Score=26.17 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=32.1
Q ss_pred ChhHHHHHhhhHHHHHhcCccCCHHHHhhHHHHHHHHHh
Q psy4018 60 SPDGQELKNKLPDAIATECKSCSEKQKEGSKKIFKYLID 98 (136)
Q Consensus 60 t~~gk~lK~~lpeal~t~C~KCT~kQK~~~~kvi~~l~~ 98 (136)
++-...|...||+++......+.+.+|+.+.++++.-.+
T Consensus 75 ~~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~ 113 (135)
T 4fu3_A 75 PEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQE 113 (135)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Confidence 466888999999999988777788888899999887554
No 37
>1x9f_C Erythrocruorin, globin III, extracellular, globin C; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_C*
Probab=35.23 E-value=33 Score=24.02 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=21.1
Q ss_pred cCCHHHHhhHHHHHHHHHhcC----------hHHHHHHHHhh
Q psy4018 80 SCSEKQKEGSKKIFKYLIDNK----------PEQWAELEKKF 111 (136)
Q Consensus 80 KCT~kQK~~~~kvi~~l~~~~----------P~~w~~l~~Ky 111 (136)
-||+.||..++....-+..+. .+.|..|...|
T Consensus 6 ~ls~~~~~~V~~sw~~v~~~~~~~~~~~~~g~~~y~rlF~~~ 47 (153)
T 1x9f_C 6 CCSEEDHRIVQKQWDILWRDTESSKIKIGFGRLLLTKLAKDI 47 (153)
T ss_dssp SSCHHHHHHHHHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHC
Confidence 477777777777777776665 44555555554
No 38
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=34.30 E-value=15 Score=30.54 Aligned_cols=15 Identities=20% Similarity=0.776 Sum_probs=12.2
Q ss_pred HHHHHHhhCCChhhH
Q psy4018 104 WAELEKKFDPNGTYK 118 (136)
Q Consensus 104 w~~l~~KyDP~~~y~ 118 (136)
..++.+||||+|.+.
T Consensus 435 L~~iK~kyDP~~vF~ 449 (459)
T 2bvf_A 435 LAAVKREYDPENRFR 449 (459)
T ss_dssp HHHHHHHHCTTCCCC
T ss_pred HHHHHHHhCcccccC
Confidence 456889999999875
No 39
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP}
Probab=30.97 E-value=18 Score=31.69 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=20.7
Q ss_pred hHHHHHHHHhhCCChhhHHHHHHHH
Q psy4018 101 PEQWAELEKKFDPNGTYKAKYQKEL 125 (136)
Q Consensus 101 P~~w~~l~~KyDP~~~y~~~~~~~l 125 (136)
=++|.++++++||+|.+...|.+.+
T Consensus 514 ~~~~~~~~~~~DP~~~F~n~~l~~l 538 (540)
T 3js8_A 514 WDAAKAALAAYDPYRLFSSPLLDSL 538 (540)
T ss_dssp HHHHHHHHHHHCTTCCSCCHHHHHH
T ss_pred HHHHHHHHHhcCCCcccCCHHHHHh
Confidence 4678888999999999998887654
No 40
>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa form; zymogen, NTN-hydrolase, penicillin biosynthesis; 1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A
Probab=30.04 E-value=85 Score=24.65 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=27.8
Q ss_pred HHhcCccCCHHHHhhHHHHHHHHHhcChHHHHHHHHhh
Q psy4018 74 IATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKF 111 (136)
Q Consensus 74 l~t~C~KCT~kQK~~~~kvi~~l~~~~P~~w~~l~~Ky 111 (136)
++..++.=.+.-++.+++++.++++..|+.|++|.-.-
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~eEi~GiA 73 (357)
T 2x1d_A 36 IRGKTKKTDEELKQVLSQLGRVIEERWPKYYEEIRGIA 73 (357)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhChhHHHHHHHHH
Confidence 34445552355677889999999999999999886544
No 41
>3n54_B Spore germination protein B3; A novel fold, lipid binding protein; 2.30A {Bacillus subtilis subsp}
Probab=29.85 E-value=10 Score=30.26 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=36.4
Q ss_pred HHHHHhhhHHHHHhcCccCCHH-HHh---hHHHHHHHHHhcChHHHHHHHHhh
Q psy4018 63 GQELKNKLPDAIATECKSCSEK-QKE---GSKKIFKYLIDNKPEQWAELEKKF 111 (136)
Q Consensus 63 gk~lK~~lpeal~t~C~KCT~k-QK~---~~~kvi~~l~~~~P~~w~~l~~Ky 111 (136)
-+.+.+.+-+.|+..|.+--.+ ||+ -+=-+=.++..+||..|+++.+.|
T Consensus 273 ~~~le~~~~~~i~~~~~~~i~k~Q~~~~~D~~gfG~~~~~~~p~~Wk~~~~~W 325 (350)
T 3n54_B 273 LHRLENIFEKKLERDVKQVMDKLQHEYKTDPVFLSDHIRIQHPDYWNKVKGHW 325 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCHHHHHHHHCHHHHHHHGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHChHHHHHHhchh
Confidence 5778888888888888776654 553 233456778889999999986666
No 42
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=29.56 E-value=22 Score=30.93 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=28.1
Q ss_pred HHHHhcChHHHHHHHHhh--CCChhhHHHHHHHHhhcCC
Q psy4018 94 KYLIDNKPEQWAELEKKF--DPNGTYKAKYQKELSDLKA 130 (136)
Q Consensus 94 ~~l~~~~P~~w~~l~~Ky--DP~~~y~~~~~~~l~~~~~ 130 (136)
.||++.||+.|+.+.++. +=++.|..++.+.++..|.
T Consensus 544 ~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (622)
T 3g06_A 544 RVLERKAPERVNALREKQISDYEETYRMLSDTELRPSGL 582 (622)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSC
T ss_pred HHHHHhChHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 567888999999998776 4457788887777776654
No 43
>3eq5_A SKI-like protein; TGF-beta, SIG protein, structural genomics, SGC stockholm, structural GEN consortium, SGC; 2.45A {Homo sapiens}
Probab=29.16 E-value=40 Score=24.30 Aligned_cols=15 Identities=20% Similarity=0.521 Sum_probs=10.1
Q ss_pred HHHhcCccCCHHHHh
Q psy4018 73 AIATECKSCSEKQKE 87 (136)
Q Consensus 73 al~t~C~KCT~kQK~ 87 (136)
.|.=.|..||+.|=+
T Consensus 76 ~L~I~c~~Ct~eQL~ 90 (125)
T 3eq5_A 76 ELYIYCSRCTSDQLH 90 (125)
T ss_dssp HHTCCCEECCHHHHH
T ss_pred hccceeecCCHHHHH
Confidence 445567888888833
No 44
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=27.96 E-value=40 Score=18.63 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=13.4
Q ss_pred HHhhHHHHHHHHHhcCh
Q psy4018 85 QKEGSKKIFKYLIDNKP 101 (136)
Q Consensus 85 QK~~~~kvi~~l~~~~P 101 (136)
+.+.++.+++||++..+
T Consensus 7 e~~aakdFv~WL~ngk~ 23 (31)
T 3c5t_B 7 EEEAVRLFIEWLKNGGP 23 (31)
T ss_dssp HHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 56788999999996553
No 45
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Probab=27.35 E-value=22 Score=30.15 Aligned_cols=15 Identities=20% Similarity=0.629 Sum_probs=12.6
Q ss_pred HHHHHHhhCCChhhH
Q psy4018 104 WAELEKKFDPNGTYK 118 (136)
Q Consensus 104 w~~l~~KyDP~~~y~ 118 (136)
-.++.+||||+|.+.
T Consensus 457 L~~iK~kyDP~~vF~ 471 (503)
T 1zr6_A 457 LQAIKAKYDPEDVFG 471 (503)
T ss_dssp HHHHHHHHCTTCTTC
T ss_pred HHHHHHHhCchhhcC
Confidence 456899999999876
No 46
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A
Probab=27.33 E-value=27 Score=24.96 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=11.7
Q ss_pred HHHHHHHhhCCChhhH
Q psy4018 103 QWAELEKKFDPNGTYK 118 (136)
Q Consensus 103 ~w~~l~~KyDP~~~y~ 118 (136)
.+.+..++|||+|+-+
T Consensus 44 ~F~~~W~~fDP~aTg~ 59 (129)
T 2kav_A 44 MFYEVWEKFDPDATQF 59 (129)
T ss_dssp HHHHHHHHHCTTCCCE
T ss_pred HHHHHHHhcCCCCceE
Confidence 3556678899998754
No 47
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=27.21 E-value=99 Score=22.31 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=38.2
Q ss_pred CHHHHhhHHHHHHHHHhc-ChHHHHHHHHhhCCChhhHHHHHHHHhhcCC
Q psy4018 82 SEKQKEGSKKIFKYLIDN-KPEQWAELEKKFDPNGTYKAKYQKELSDLKA 130 (136)
Q Consensus 82 T~kQK~~~~kvi~~l~~~-~P~~w~~l~~KyDP~~~y~~~~~~~l~~~~~ 130 (136)
|++|++...-+.+++.++ +|-...+|.+.++=+..-.....+.|.+.|.
T Consensus 4 t~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~ 53 (196)
T 3k2z_A 4 TERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGY 53 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCC
Confidence 899999999999999875 6888999999996544446666667766553
No 48
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=27.03 E-value=20 Score=30.83 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=18.4
Q ss_pred HHHhhCCCh--hhHHHHHHHHhh
Q psy4018 107 LEKKFDPNG--TYKAKYQKELSD 127 (136)
Q Consensus 107 l~~KyDP~~--~y~~~~~~~l~~ 127 (136)
..+||||+| .|..++--+|+.
T Consensus 466 q~~k~Dp~gyi~yir~wvpel~~ 488 (506)
T 3umv_A 466 CKRKFDVDAYISYVKRLAGQSKK 488 (506)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCchHHHHHHhCHHhcC
Confidence 468999999 999999888877
No 49
>1kpt_A KP4 toxin; killer toxin, virally encoded, single subunit, alpha/beta family, LEFT-handed crossover, fungal TOXI; 1.75A {Ustilago maydis} SCOP: d.70.1.1
Probab=26.61 E-value=36 Score=23.74 Aligned_cols=29 Identities=17% Similarity=0.434 Sum_probs=25.3
Q ss_pred cCCCCCChhHHHHHhhhHHHHHhcCccCC
Q psy4018 54 LDKGKCSPDGQELKNKLPDAIATECKSCS 82 (136)
Q Consensus 54 LdkgpCt~~gk~lK~~lpeal~t~C~KCT 82 (136)
+..+.|+--+.+.|..+-..+...|++|-
T Consensus 54 ~Q~t~~~~~g~~~~~~~~~L~~hGCk~CG 82 (105)
T 1kpt_A 54 VQSTNNCISGTEACRHLTNLVNHGCRVCG 82 (105)
T ss_dssp EESSSCCEEHHHHHHHHHHHHHHTCSSCE
T ss_pred EeCCCCCcCHHHHHHHHHHHHhcCccccC
Confidence 55667887899999999999999999994
No 50
>1lba_A T7 lysozyme; hydrolase(acting on linear amides); 2.20A {Enterobacteria phage T7} SCOP: d.118.1.1 PDB: 1aro_L
Probab=26.43 E-value=41 Score=23.72 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=19.5
Q ss_pred CCHHHHhhHHHHHHHHHhcChH
Q psy4018 81 CSEKQKEGSKKIFKYLIDNKPE 102 (136)
Q Consensus 81 CT~kQK~~~~kvi~~l~~~~P~ 102 (136)
=|+.|.+.+..++.+|.+.||.
T Consensus 91 ~t~aq~~al~~Li~~l~~~yp~ 112 (146)
T 1lba_A 91 FTPAQMQSLRSLLVTLLAKYEG 112 (146)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTT
T ss_pred CcHHHHHHHHHHHHHHHHHCCC
Confidence 3689999999999999998874
No 51
>2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens}
Probab=25.34 E-value=1.2e+02 Score=21.36 Aligned_cols=54 Identities=22% Similarity=0.420 Sum_probs=41.5
Q ss_pred hhhcCCCCCChhHHHHHhhhHHHHHh----cCc-----cCCHHHHhhHHHHHHHHHhcChHHH
Q psy4018 51 NCLLDKGKCSPDGQELKNKLPDAIAT----ECK-----SCSEKQKEGSKKIFKYLIDNKPEQW 104 (136)
Q Consensus 51 ~ClLdkgpCt~~gk~lK~~lpeal~t----~C~-----KCT~kQK~~~~kvi~~l~~~~P~~w 104 (136)
+|-+++=.++.+.+.|.+-|--.|-+ .|. .||+.=|..++.+++-++.++-..|
T Consensus 41 ~Ck~GRITs~EDFK~LaRKLTh~V~~KElk~~~~~~~L~~tesVK~Ka~~fi~kYM~K~G~vY 103 (112)
T 2a7o_A 41 DCKVGRITTTEDFKHLARKLTHGVMNKELKYCKNPEDLECNENVKHKTKEYIKKYMQKFGAVY 103 (112)
T ss_dssp TCSSSBCCCHHHHHHHHHHHHHHHHHHHHHHHCCGGGCSCCHHHHHHHHHHHHHHHTTTCSBC
T ss_pred ccccCccccHHHHHHHHHHHHHHHHHHHHHhcCCCcceeechhhHHHHHHHHHHHHHHhCCcc
Confidence 68888888898888887766655543 354 5999999999999998888765543
No 52
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=25.18 E-value=28 Score=29.30 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=11.8
Q ss_pred HHHHHhhCCChhhH
Q psy4018 105 AELEKKFDPNGTYK 118 (136)
Q Consensus 105 ~~l~~KyDP~~~y~ 118 (136)
.++.+||||+|.++
T Consensus 475 ~~IK~kyDP~nvF~ 488 (500)
T 3tsh_A 475 AITKGKVDPTDYFR 488 (500)
T ss_dssp HHHHHHHCTTCCSC
T ss_pred HHHHHHhCcccccC
Confidence 57889999999864
No 53
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=23.84 E-value=55 Score=22.67 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=14.1
Q ss_pred C-CHHHHhhHHHHHHHHHhc
Q psy4018 81 C-SEKQKEGSKKIFKYLIDN 99 (136)
Q Consensus 81 C-T~kQK~~~~kvi~~l~~~ 99 (136)
| |+.||..++....-+..+
T Consensus 10 c~s~~~~~~v~~sw~~v~~~ 29 (150)
T 1sct_A 10 CGSEAIKANLRRSWGVLSAD 29 (150)
T ss_dssp HTCHHHHHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 5 788888887777777655
No 54
>3r8n_O 30S ribosomal protein S15; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* ...
Probab=23.60 E-value=82 Score=21.05 Aligned_cols=22 Identities=18% Similarity=0.534 Sum_probs=18.8
Q ss_pred HHHHHHHHhcChHHHHHHHHhh
Q psy4018 90 KKIFKYLIDNKPEQWAELEKKF 111 (136)
Q Consensus 90 ~kvi~~l~~~~P~~w~~l~~Ky 111 (136)
+++++||.++.++-|..++++.
T Consensus 63 rkLL~YL~~~d~~rY~~li~~L 84 (88)
T 3r8n_O 63 RKLLDYLKRKDVARYTQLIERL 84 (88)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHh
Confidence 5789999999999999888764
No 55
>1x9f_A Globin IV, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_A*
Probab=23.36 E-value=71 Score=22.23 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=11.0
Q ss_pred CCHHHHhhHHHHHHHHHhcC
Q psy4018 81 CSEKQKEGSKKIFKYLIDNK 100 (136)
Q Consensus 81 CT~kQK~~~~kvi~~l~~~~ 100 (136)
||+.||..++....-+..+.
T Consensus 7 ls~~~~~~V~~sw~~v~~~~ 26 (151)
T 1x9f_A 7 CSYEDRREIRHIWDDVWSSS 26 (151)
T ss_dssp CCHHHHHHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHHHHHHHccc
Confidence 55556655555555554443
No 56
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=23.34 E-value=93 Score=22.63 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=31.0
Q ss_pred hcCHHHHHHHhhhhcCCCCCChhHHHHHhhhHHHHHh
Q psy4018 40 LKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIAT 76 (136)
Q Consensus 40 L~N~rl~~~y~~ClLdkgpCt~~gk~lK~~lpeal~t 76 (136)
+.|=..-++|++.+|...|=+..++.||..|-+.+..
T Consensus 90 l~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~i~k 126 (144)
T 1y8m_A 90 LGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQK 126 (144)
T ss_dssp TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3444556789999999999999999999999988753
No 57
>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...
Probab=23.19 E-value=75 Score=21.29 Aligned_cols=23 Identities=26% Similarity=0.690 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcChHHHHHHHHhh
Q psy4018 89 SKKIFKYLIDNKPEQWAELEKKF 111 (136)
Q Consensus 89 ~~kvi~~l~~~~P~~w~~l~~Ky 111 (136)
=+++++||.++.++.|..++++.
T Consensus 63 RrkLL~YLk~~d~~rY~~li~~L 85 (89)
T 2vqe_O 63 RRRLLRYLQREDPERYRALIEKL 85 (89)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHh
Confidence 35789999999999999888765
No 58
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=22.63 E-value=65 Score=22.26 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=23.2
Q ss_pred cCCHHHHhc--CHHHHHHHhhhhcCCCCCChh
Q psy4018 33 NVDLDQILK--NDRLFNNYYNCLLDKGKCSPD 62 (136)
Q Consensus 33 ~iDid~iL~--N~rl~~~y~~ClLdkgpCt~~ 62 (136)
.||||++|. ++..+.+++.=+|-.-||..+
T Consensus 53 eIDiDeLLDl~sdeeR~~~LqelL~~C~~ptE 84 (99)
T 1j2m_A 53 EVNIDELLELESEEERSRKIQGLLKSCTNPTE 84 (99)
T ss_dssp SCCSHHHHCCTTTTHHHHHHHHHHHTTSCCCH
T ss_pred ccCHHHHhcCCcHHHHHHHHHHHHHHcCCCHH
Confidence 799999985 667777777777777777655
No 59
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=22.61 E-value=31 Score=29.09 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=12.1
Q ss_pred HHHHHHhhCCChhhH
Q psy4018 104 WAELEKKFDPNGTYK 118 (136)
Q Consensus 104 w~~l~~KyDP~~~y~ 118 (136)
-.++.+||||+|.++
T Consensus 450 L~~vK~kyDP~n~F~ 464 (473)
T 3rja_A 450 LQKLKAKFDPTDRFY 464 (473)
T ss_dssp HHHHHHHHCTTCTTC
T ss_pred HHHHhhccCchhhCC
Confidence 456788999999875
No 60
>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H
Probab=22.16 E-value=81 Score=21.08 Aligned_cols=22 Identities=18% Similarity=0.558 Sum_probs=18.6
Q ss_pred HHHHHHHHhcChHHHHHHHHhh
Q psy4018 90 KKIFKYLIDNKPEQWAELEKKF 111 (136)
Q Consensus 90 ~kvi~~l~~~~P~~w~~l~~Ky 111 (136)
+++++||.++.++.|..++++.
T Consensus 63 rkLL~YL~~~d~~rY~~li~~L 84 (88)
T 1a32_A 63 RRLLAYLRNKDVARYREIVEKL 84 (88)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHh
Confidence 5788999999999998888764
No 61
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*
Probab=21.76 E-value=29 Score=29.61 Aligned_cols=15 Identities=13% Similarity=0.570 Sum_probs=12.0
Q ss_pred HHHHHHhhCCChhhH
Q psy4018 104 WAELEKKFDPNGTYK 118 (136)
Q Consensus 104 w~~l~~KyDP~~~y~ 118 (136)
-.++.+||||+|.+.
T Consensus 502 L~~iK~kyDP~~vF~ 516 (523)
T 2wdx_A 502 LRKVKAAYDPRNHFH 516 (523)
T ss_dssp HHHHHHHHCTTCCSC
T ss_pred HHHHHHHhCcHhhcC
Confidence 345899999999764
No 62
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}
Probab=21.38 E-value=1.1e+02 Score=24.63 Aligned_cols=54 Identities=7% Similarity=-0.116 Sum_probs=34.6
Q ss_pred CHHHHhhHHHHHHHHHhcChHHHHHHHHhhCCCh-hhH--HHHHHHHhhc---CCCCCCC
Q psy4018 82 SEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNG-TYK--AKYQKELSDL---KAGKPVK 135 (136)
Q Consensus 82 T~kQK~~~~kvi~~l~~~~P~~w~~l~~KyDP~~-~y~--~~~~~~l~~~---~~~~~~~ 135 (136)
|+.|+...+.+-+|+.++.+....+....-|.++ .|- ..+-+.+.+. +..+|++
T Consensus 8 ~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~e 67 (438)
T 3mkh_A 8 SASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPA 67 (438)
T ss_dssp CHHHHHHHHHHHHHHHHTHHHHHHHHTTSCTTCHHHHHTTHHHHHHHHHTTTTGGGSCGG
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHhhccccccCcCCCcHHHHHHHHhCCCCCCCCCcc
Confidence 6788888888889999888776655443335555 552 3444455554 3556654
No 63
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A*
Probab=21.35 E-value=30 Score=29.62 Aligned_cols=15 Identities=13% Similarity=0.640 Sum_probs=12.1
Q ss_pred HHHHHHhhCCChhhH
Q psy4018 104 WAELEKKFDPNGTYK 118 (136)
Q Consensus 104 w~~l~~KyDP~~~y~ 118 (136)
-.++.+||||+|.+.
T Consensus 506 L~~iK~kyDP~nvF~ 520 (530)
T 2y3s_A 506 LQAVKARWDPRNVFR 520 (530)
T ss_dssp HHHHHHHHCTTCCSC
T ss_pred HHHHHHHhCchhhcC
Confidence 345889999999875
No 64
>3u5s_A FAD-linked sulfhydryl oxidase ALR; flavin, liver, oxidoreductase; HET: FAD; 1.50A {Homo sapiens} PDB: 3mbg_A* 3tk0_A* 3o55_A* 3u2m_A* 3u2l_A* 3r7c_A* 1oqc_A*
Probab=21.23 E-value=2e+02 Score=19.91 Aligned_cols=44 Identities=11% Similarity=0.177 Sum_probs=35.2
Q ss_pred CCHHHHhhHHHHHHHHHhcCh-----HHHHHHHHhhCCChhhHHHHHHH
Q psy4018 81 CSEKQKEGSKKIFKYLIDNKP-----EQWAELEKKFDPNGTYKAKYQKE 124 (136)
Q Consensus 81 CT~kQK~~~~kvi~~l~~~~P-----~~w~~l~~KyDP~~~y~~~~~~~ 124 (136)
=|+.||+.+..+|..+...+| +.+.++++++-|+-.=++.|-..
T Consensus 42 Pt~~~k~~~~~fi~~l~~~lPC~~C~~hf~~~l~~~pp~l~SR~~l~~W 90 (126)
T 3u5s_A 42 PTPEQQQDMAQFIHLFSKFYPXEEXAEDLRKRLARNHPDTRTRAAFTQW 90 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHCccccCCHHHHHHH
Confidence 378999999999999999998 56788899998876666666533
No 65
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}
Probab=20.92 E-value=31 Score=29.37 Aligned_cols=15 Identities=13% Similarity=0.660 Sum_probs=12.1
Q ss_pred HHHHHHhhCCChhhH
Q psy4018 104 WAELEKKFDPNGTYK 118 (136)
Q Consensus 104 w~~l~~KyDP~~~y~ 118 (136)
-.++.+||||+|.++
T Consensus 498 L~~iK~kyDP~~vF~ 512 (521)
T 2ipi_A 498 LQKVKARWDPRDVFR 512 (521)
T ss_dssp HHHHHHHHCTTCCSC
T ss_pred HHHHHHHhCCcCEec
Confidence 356889999999874
No 66
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=20.77 E-value=71 Score=17.76 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=14.1
Q ss_pred HHhhHHHHHHHHHhcChH
Q psy4018 85 QKEGSKKIFKYLIDNKPE 102 (136)
Q Consensus 85 QK~~~~kvi~~l~~~~P~ 102 (136)
+...++++++||+..+|.
T Consensus 15 ~~~aak~fl~wL~~~k~~ 32 (33)
T 2l63_A 15 DNLAARDFINWLIQTKIT 32 (33)
T ss_dssp HHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 456788999999987763
No 67
>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...
Probab=20.40 E-value=91 Score=20.83 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcChHHHHHHHHhh
Q psy4018 89 SKKIFKYLIDNKPEQWAELEKKF 111 (136)
Q Consensus 89 ~~kvi~~l~~~~P~~w~~l~~Ky 111 (136)
-+++++||.++.++-|..++++.
T Consensus 62 RrrLL~YLk~~d~~rY~~li~~L 84 (88)
T 4a5u_B 62 RRKLLDYLKRKDVARYTQLIERL 84 (88)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCHHHHHHHHHHh
Confidence 37889999999999998888764
No 68
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=20.38 E-value=1.4e+02 Score=20.02 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=30.9
Q ss_pred cCccCCHHHHhhHHHHHHHH-HhcChHHHHHHHHhhCCChh
Q psy4018 77 ECKSCSEKQKEGSKKIFKYL-IDNKPEQWAELEKKFDPNGT 116 (136)
Q Consensus 77 ~C~KCT~kQK~~~~kvi~~l-~~~~P~~w~~l~~KyDP~~~ 116 (136)
.-..++.-++..+..+...+ ....-..|.++-..||.+|.
T Consensus 14 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~F~~~D~d~~ 54 (191)
T 3khe_A 14 KFQSSQKLAQAAMLFMGSKLTTLEETKELTQIFRQLDNNGD 54 (191)
T ss_dssp HCCCCCHHHHHHHHHHHHHSSCTTTTHHHHHHHHHHCTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHcCCCC
Confidence 45667888888888877777 56667888888999988764
No 69
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=20.33 E-value=31 Score=23.44 Aligned_cols=51 Identities=16% Similarity=0.015 Sum_probs=39.2
Q ss_pred CHHHHhhHHHHHHHHHhcChHHHHHHHHhhCCChhhHHHHHHHHhhcCCCCC
Q psy4018 82 SEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKELSDLKAGKP 133 (136)
Q Consensus 82 T~kQK~~~~kvi~~l~~~~P~~w~~l~~KyDP~~~y~~~~~~~l~~~~~~~~ 133 (136)
++.|.....+++..+.+ .|....++...+.-+.+-...+...+...|..+|
T Consensus 2 ~~~~~~l~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~ 52 (121)
T 2pjp_A 2 SEEQQAIWQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITA 52 (121)
T ss_dssp CHHHHHHHHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 67888889999998865 7778888998888777766777777777775444
No 70
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=20.22 E-value=64 Score=22.60 Aligned_cols=47 Identities=21% Similarity=0.095 Sum_probs=21.2
Q ss_pred HHhhHHHHHHHHHhcChHHHHHHHHhhCCChh---hHHHHHHHHhhcCCC
Q psy4018 85 QKEGSKKIFKYLIDNKPEQWAELEKKFDPNGT---YKAKYQKELSDLKAG 131 (136)
Q Consensus 85 QK~~~~kvi~~l~~~~P~~w~~l~~KyDP~~~---y~~~~~~~l~~~~~~ 131 (136)
|+.....+...+....-+.|.++-..||++|. =.+.|...+...|..
T Consensus 35 ~~~~l~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~ 84 (191)
T 3k21_A 35 QKLAMTIIAQQSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLK 84 (191)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCCC
Confidence 34444444444433444445555555565542 333444444444443
Done!