RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4018
(136 letters)
>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth
(Mamestra brassicae) [TaxId: 55057]}
Length = 101
Score = 147 bits (374), Expect = 4e-48
Identities = 49/100 (49%), Positives = 71/100 (71%)
Query: 26 KYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEKQ 85
KYT KYDN++LD+IL N RL Y NC++++GKCSP+G+ELK L DAI CK C+E Q
Sbjct: 1 KYTDKYDNINLDEILANKRLLVAYVNCVMERGKCSPEGKELKEHLQDAIENGCKKCTENQ 60
Query: 86 KEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKEL 125
++G+ ++ ++LI N+ E W EL K+DP G ++ KY+
Sbjct: 61 EKGAYRVIEHLIKNEIEIWRELTAKYDPTGNWRKKYEDRA 100
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase
{Thermus thermophilus [TaxId: 274]}
Length = 234
Score = 32.6 bits (73), Expect = 0.010
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 109 KKFDPNGTYKAKYQKELSDLKAGKPV 134
++ DP G + ++ E PV
Sbjct: 204 ERHDPEGRWLKRWAPEYPSYAPKDPV 229
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 26.1 bits (57), Expect = 0.60
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 101 PEQWAELEKKFDPNGTYKAKYQKE 124
+Q LE F+ +
Sbjct: 10 EDQVEILEYNFNKVNKHPDPTTLC 33
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain
{Synechocystis sp., pcc 6803 [TaxId: 1143]}
Length = 279
Score = 25.7 bits (55), Expect = 2.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 109 KKFDPNGTYKAKYQKELSDL 128
+++DP GTY + EL +L
Sbjct: 215 QQYDPQGTYLRHWLPELKNL 234
>d1szqa_ e.44.1.1 (A:) 2-methylcitrate dehydratase PrpD {Escherichia
coli [TaxId: 562]}
Length = 473
Score = 25.7 bits (55), Expect = 2.2
Identities = 5/33 (15%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 98 DNKPEQWAELEKKFDPN--GTYKAKYQKELSDL 128
+ + +L KF N + + Q+ + ++
Sbjct: 420 RRRQDGIPKLVDKFKINLARQFPTRQQQRILEV 452
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase
{Escherichia coli [TaxId: 562]}
Length = 269
Score = 25.6 bits (55), Expect = 2.3
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 88 GSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKELSDL 128
G+ + I N Q +KFD G + ++ EL D+
Sbjct: 189 GTDAAPYFRIFNPTTQG----EKFDHEGEFIRQWLPELRDV 225
>d2g9hd1 b.40.2.2 (D:4-86) Enterotoxin type I, SEI {Staphylococcus
aureus [TaxId: 1280]}
Length = 83
Score = 24.0 bits (52), Expect = 4.3
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 27 YTTKYDNVDL------DQILKNDRLFNNYYNCLLDKGKCSPDGQELKNK 69
+ TK+D +DL + N F+ N L+ + + + K K
Sbjct: 9 FYTKHDYIDLKGLIDKNLPSANQLEFSTGINDLISESNNWDEISKFKGK 57
>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689
{Leishmania major [TaxId: 5664]}
Length = 182
Score = 24.5 bits (53), Expect = 5.1
Identities = 5/49 (10%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 64 QELKNKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFD 112
L + + E + ++ ++ ++ +L K F+
Sbjct: 4 AALADATRRELEEEMGRSDKPEQPTPPAGWQ-VVRKPGTCTFDLTKSFE 51
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 23.8 bits (51), Expect = 6.2
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 90 KKIFKYLIDNKPEQWAELEKKFDP 113
+ + K ++ A LEK +P
Sbjct: 116 LDLCDEKLKEKEDKLARLEKAINP 139
>d1y0ba1 c.61.1.1 (A:1-191) Xanthine phosphoribosyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 191
Score = 24.2 bits (52), Expect = 6.8
Identities = 11/47 (23%), Positives = 16/47 (34%)
Query: 30 KYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIAT 76
+ V DQ+LK D N+ + LL + I T
Sbjct: 10 EEGVVLSDQVLKVDSFLNHQIDPLLMQRIGDEFASRFAKDGITKIVT 56
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 133
Score = 23.7 bits (51), Expect = 6.8
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 73 AIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKELSDL 128
+ + K + + G ++ K I+N EQ + P+ +++ Y + L
Sbjct: 2 QASEDVKEIFARARNGKYRLLKISIEN--EQL-VVGSCSPPSDSWEQDYDSFVLPL 54
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 23.8 bits (50), Expect = 7.9
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 40 LKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEKQKEGSKKIFKYLI 97
L++D N + +K C GQ+L ++ EC S ++G K +F I
Sbjct: 125 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC---SALTQKGLKTVFDEAI 179
>d3ejna1 a.118.8.6 (A:32-490) Uncharacterized protein BF3025
{Bacteroides fragilis [TaxId: 817]}
Length = 459
Score = 24.2 bits (51), Expect = 8.2
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 26 KYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIA 75
K + D DQ K R YY+ L + K + + + + A+
Sbjct: 27 KKVIQADGESADQYYKWTRGSFGYYDNLRNVQKMGEEAERVNAPVYTALT 76
>d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD
{Escherichia coli [TaxId: 562]}
Length = 431
Score = 23.9 bits (51), Expect = 8.5
Identities = 3/14 (21%), Positives = 8/14 (57%)
Query: 26 KYTTKYDNVDLDQI 39
+Y+ K+D + +
Sbjct: 50 EYSAKFDKTTVTAL 63
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 22.4 bits (48), Expect = 9.1
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 101 PEQWAELEKKFDPNGTYKAKYQKELS 126
EQ LEK+F+ ++ L+
Sbjct: 10 QEQIEALEKEFERTHYPDVFARERLA 35
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris)
[TaxId: 9615]}
Length = 142
Score = 23.3 bits (50), Expect = 10.0
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 98 DNKPEQWAELEKKFDPNGT----YKAKYQKELSDLKAGKP 133
D KPE W E K DP+ + ++ D +A KP
Sbjct: 13 DQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKP 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.134 0.394
Gapped
Lambda K H
0.267 0.0422 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 529,457
Number of extensions: 24755
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 28
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)