BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4019
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19538|CI_DROME Transcriptional activator cubitus interruptus OS=Drosophila
melanogaster GN=ci PE=1 SV=2
Length = 1397
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 56/95 (58%), Gaps = 12/95 (12%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKGMPSKDKDGLGGASPSRS 70
S++KPY+C CTKRYTDPSSLRKH+KTVHG YANKKHKG+P D + + SR
Sbjct: 573 SNEKPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLNDANSRLQQNNSRH 632
Query: 71 -------DDMPLS-----AKTASVSSPSIKSEVSV 93
D P S K SSPSIKSE +
Sbjct: 633 NLQEHNIDSSPCSEDSHLGKMLGTSSPSIKSESDI 667
>sp|O77027|CI_DROYA Protein cubitus interruptus (Fragment) OS=Drosophila yakuba GN=ci
PE=3 SV=1
Length = 403
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 54/97 (55%), Gaps = 14/97 (14%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKGMPSKDKD---------G 61
S++KPY+C CTKRYTDPSSLRKH+KTVHG YANKKHKG+P D + G
Sbjct: 53 SNEKPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLDDVNSRLQRDNSQG 112
Query: 62 LGGASPSRSDDMPLS-----AKTASVSSPSIKSEVSV 93
D P S K SSPSIKSE +
Sbjct: 113 RHNLQEHNIDSSPCSEDSHIGKILGTSSPSIKSESDI 149
>sp|Q91690|GLI1_XENLA Zinc finger protein GLI1 (Fragment) OS=Xenopus laevis GN=gli1 PE=2
SV=2
Length = 1360
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 39/57 (68%), Gaps = 6/57 (10%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKGMPSKDKDGLGGASP 67
S++KPYVC CTKRYTDPSSLRKH+KTVHG + KKH+G DG+ A P
Sbjct: 372 SNEKPYVCKIPGCTKRYTDPSSLRKHVKTVHGPEAHITKKHRG------DGMLRAQP 422
>sp|P08151|GLI1_HUMAN Zinc finger protein GLI1 OS=Homo sapiens GN=GLI1 PE=1 SV=1
Length = 1106
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKG 53
S++KPYVC CTKRYTDPSSLRKH+KTVHG + K+H+G
Sbjct: 357 SNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHGPDAHVTKRHRG 399
>sp|P47806|GLI1_MOUSE Zinc finger protein GLI1 OS=Mus musculus GN=Gli1 PE=1 SV=4
Length = 1111
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 16/100 (16%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKG-------------MPSK 57
S++KPYVC CTKRYTDPSSLRKH+KTVHG + K+H+G P +
Sbjct: 360 SNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHGPDAHVTKRHRGDGPLPRAQPLSTVEPKR 419
Query: 58 DKDGLGGASPSRSDDMPLSAKTASVSSPSIKSEVSVDLDP 97
+++G G SR + + SP +S S D P
Sbjct: 420 EREGGSGREESR---LTVPESAMPQQSPGAQSSCSSDHSP 456
>sp|Q61602|GLI3_MOUSE Transcriptional activator GLI3 OS=Mus musculus GN=Gli3 PE=1 SV=2
Length = 1583
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKG 53
S++KPYVC CTKRYTDPSSLRKH+KTVHG + KK +G
Sbjct: 602 SNEKPYVCKIPGCTKRYTDPSSLRKHVKTVHGPEAHVTKKQRG 644
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYA 47
+ +KP+ C E CTK Y+ +L+ H+++ GE Y
Sbjct: 541 TGEKPHKCTFEGCTKAYSRLENLKTHLRSHTGEKPYV 577
>sp|Q5IS56|GLI3_PANTR Transcriptional activator GLI3 OS=Pan troglodytes GN=GLI3 PE=2 SV=1
Length = 1580
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKG 53
S++KPYVC CTKRYTDPSSLRKH+KTVHG + KK +G
Sbjct: 602 SNEKPYVCKIPGCTKRYTDPSSLRKHVKTVHGPEAHVTKKQRG 644
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKG 53
+ +KP+ C E CTK Y+ +L+ H+++ GE Y +H+G
Sbjct: 541 TGEKPHKCTFEGCTKAYSRLENLKTHLRSHTGEKPYVC-EHEG 582
>sp|P10071|GLI3_HUMAN Transcriptional activator GLI3 OS=Homo sapiens GN=GLI3 PE=1 SV=6
Length = 1580
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKG 53
S++KPYVC CTKRYTDPSSLRKH+KTVHG + KK +G
Sbjct: 602 SNEKPYVCKIPGCTKRYTDPSSLRKHVKTVHGPEAHVTKKQRG 644
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKG 53
+ +KP+ C E CTK Y+ +L+ H+++ GE Y +H+G
Sbjct: 541 TGEKPHKCTFEGCTKAYSRLENLKTHLRSHTGEKPYVC-EHEG 582
>sp|Q91660|GLI3_XENLA Zinc finger protein GLI3 OS=Xenopus laevis GN=gli3 PE=2 SV=1
Length = 1569
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKG 53
S++KPYVC CTKRYTDPSSLRKH+KTVHG + KK +G
Sbjct: 607 SNEKPYVCKIPGCTKRYTDPSSLRKHVKTVHGPEAHVTKKQRG 649
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYA 47
+ +KP+ C E C+K Y+ +L+ H+++ GE Y
Sbjct: 546 TGEKPHKCTFEGCSKAYSRLENLKTHLRSHTGEKPYV 582
>sp|Q91661|GLI4_XENLA Zinc finger protein GLI4 OS=Xenopus laevis GN=gli4 PE=2 SV=1
Length = 1361
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 33/42 (78%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHK 52
S++KPY+C CTKRYTDPSSLRKH+KTVHG + KKH+
Sbjct: 411 SNEKPYICKVPGCTKRYTDPSSLRKHVKTVHGPEAHVTKKHR 452
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYA 47
+ +KP+ C E C K Y+ +L+ H+++ GE Y
Sbjct: 350 TGEKPHKCTFEGCFKAYSRLENLKTHLRSHTGEKPYV 386
>sp|Q9IA31|GLI3_CHICK Transcriptional activator GLI3 (Fragment) OS=Gallus gallus GN=GLI3
PE=1 SV=1
Length = 1544
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKG 53
S++KPYVC CTKRYTDPSSLRKH+KTVHG + KK +G
Sbjct: 604 SNEKPYVCKIPGCTKRYTDPSSLRKHVKTVHGPEAHVTKKQRG 646
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKG 53
+ +KP+ C E CTK Y+ +L+ H+++ GE Y +H+G
Sbjct: 543 TGEKPHKCTFEGCTKAYSRLENLKTHLRSHTGEKPYV-CEHEG 584
>sp|P55878|GLI1_CHICK Zinc finger protein GLI1 (Fragment) OS=Gallus gallus GN=GLI1 PE=2
SV=1
Length = 556
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKG 53
S++KPY+C CTKRYTDPSSLRKH+KTVHG + KKH+G
Sbjct: 369 SNEKPYICKIPGCTKRYTDPSSLRKHVKTVHGPDAHVTKKHRG 411
>sp|P10070|GLI2_HUMAN Zinc finger protein GLI2 OS=Homo sapiens GN=GLI2 PE=1 SV=4
Length = 1586
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 32/42 (76%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHK 52
S++KPY+C CTKRYTDPSSLRKH+KTVHG + KK +
Sbjct: 559 SNEKPYICKIPGCTKRYTDPSSLRKHVKTVHGPDAHVTKKQR 600
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKG 53
+ +KP+ C E C+K Y+ +L+ H+++ GE Y +H+G
Sbjct: 498 TGEKPHKCTFEGCSKAYSRLENLKTHLRSHTGEKPYVC-EHEG 539
>sp|Q0VGT2|GLI2_MOUSE Zinc finger protein GLI2 OS=Mus musculus GN=Gli2 PE=1 SV=2
Length = 1544
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 32/42 (76%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHK 52
S++KPY+C CTKRYTDPSSLRKH+KTVHG + KK +
Sbjct: 539 SNEKPYICKIPGCTKRYTDPSSLRKHVKTVHGPDAHVTKKQR 580
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCY 46
+ +KP+ C E C+K Y+ +L+ H+++ GE Y
Sbjct: 478 TGEKPHKCTFEGCSKAYSRLENLKTHLRSHTGEKPY 513
>sp|P55879|GLI2_CHICK Zinc finger protein GLI2 (Fragment) OS=Gallus gallus GN=GLI2 PE=2
SV=1
Length = 663
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 32/42 (76%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHK 52
S++KPYVC CTKRYTDPSSLRKH+KTVHG + KK +
Sbjct: 356 SNEKPYVCKIPGCTKRYTDPSSLRKHVKTVHGPDAHVTKKQR 397
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYA 47
+ +KP+ C E C+K Y+ +L+ H+++ GE Y
Sbjct: 295 TGEKPHKCTFEGCSKAYSRLENLKTHLRSHTGEKPYV 331
>sp|P34708|TRA1_CAEEL Sex-determining transformer protein 1 OS=Caenorhabditis elegans
GN=tra-1 PE=1 SV=1
Length = 1110
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 27/40 (67%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKK 50
S+ KPY C CTK YTDPSSLRKHIK VHG+ Y K
Sbjct: 332 SNLKPYSCQIPQCTKSYTDPSSLRKHIKAVHGDDEYEKAK 371
>sp|Q17308|TRA1_CAEBR Sex-determining transformer protein 1 OS=Caenorhabditis briggsae
GN=tra-1 PE=1 SV=1
Length = 1165
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 26/40 (65%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKK 50
S+ KPY C C K YTDPSSLRKHIK VHG+ Y K
Sbjct: 350 SNLKPYSCQIGGCQKSYTDPSSLRKHIKAVHGDEEYEKAK 389
>sp|Q7K0S9|GLIS2_DROME Zinc finger protein GLIS2 homolog OS=Drosophila melanogaster GN=sug
PE=2 SV=1
Length = 384
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTV-HGEHCYANK 49
S +KPY+C C KRYTDPSSLRKH+KT H H A++
Sbjct: 249 SMEKPYMCKVAGCQKRYTDPSSLRKHVKTFKHSIHLIASQ 288
>sp|Q6XP49|GLIS3_MOUSE Zinc finger protein GLIS3 OS=Mus musculus GN=Glis3 PE=2 SV=2
Length = 780
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 23/37 (62%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKK 50
KPY C CTKRYTDPSSLRKH+K A KK
Sbjct: 470 KPYACQIPGCTKRYTDPSSLRKHVKAHSSREQQARKK 506
>sp|Q8NEA6|GLIS3_HUMAN Zinc finger protein GLIS3 OS=Homo sapiens GN=GLIS3 PE=2 SV=5
Length = 775
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 24/37 (64%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKK 50
KPY C CTKRYTDPSSLRKH+K + A KK
Sbjct: 470 KPYACQIPGCTKRYTDPSSLRKHVKAHSSKEQQARKK 506
>sp|Q8NBF1|GLIS1_HUMAN Zinc finger protein GLIS1 OS=Homo sapiens GN=GLIS1 PE=2 SV=2
Length = 620
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKGMPSKDKDGL 62
KPY C C+KRYTDPSSLRKH+K + KK P + D L
Sbjct: 320 KPYACQIPGCSKRYTDPSSLRKHVKAHSAKEQQVRKKLHAGPDTEADVL 368
>sp|Q98T94|GLIS2_XENLA Zinc finger protein GLIS2 OS=Xenopus laevis GN=glis2 PE=2 SV=1
Length = 492
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHG 42
KPY C C KRYTDPSSLRKHIK HG
Sbjct: 281 KPYYCKMPGCQKRYTDPSSLRKHIK-AHG 308
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKT 39
+ +KPY+C E C KRY++ S KH +T
Sbjct: 248 TGEKPYMCPYEGCNKRYSNSSDRFKHTRT 276
>sp|Q8K1M4|GLIS1_MOUSE Zinc finger protein GLIS1 OS=Mus musculus GN=Glis1 PE=2 SV=2
Length = 789
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKT 39
KPY C C+KRYTDPSSLRKH+K
Sbjct: 491 KPYACQIPGCSKRYTDPSSLRKHVKA 516
>sp|Q9BZE0|GLIS2_HUMAN Zinc finger protein GLIS2 OS=Homo sapiens GN=GLIS2 PE=1 SV=2
Length = 524
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHG 42
KPY C C KRYTDPSSLRKHIK HG
Sbjct: 291 KPYYCKMPGCHKRYTDPSSLRKHIKA-HG 318
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKT 39
+ +KPYVC E C KRY++ S KH +T
Sbjct: 258 TGEKPYVCPYEGCNKRYSNSSDRFKHTRT 286
>sp|Q8VDL9|GLIS2_MOUSE Zinc finger protein GLIS2 OS=Mus musculus GN=Glis2 PE=1 SV=1
Length = 521
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHG 42
KPY C C KRYTDPSSLRKHIK HG
Sbjct: 291 KPYYCKMPGCHKRYTDPSSLRKHIKA-HG 318
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKT 39
+ +KPYVC E C KRY++ S KH +T
Sbjct: 258 TGEKPYVCPYEGCNKRYSNSSDRFKHTRT 286
>sp|Q61467|ZIC4_MOUSE Zinc finger protein ZIC 4 OS=Mus musculus GN=Zic4 PE=1 SV=2
Length = 341
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+S KPY+C C K YT PSSLRKH+K VHG
Sbjct: 266 TSDKPYMCKVRGCDKCYTHPSSLRKHMK-VHGR 297
>sp|Q91853|ZN143_XENLA Zinc finger protein 143 OS=Xenopus laevis GN=znf143 PE=1 SV=2
Length = 565
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+ +KPY C EENCTK + L+KH++T GE
Sbjct: 285 TGEKPYRCSEENCTKSFKTSGDLQKHVRTHTGE 317
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 9 LLSSQKPYVCGEENCTKRYTDPSSLRKH 36
+ + +KPYVC C KR+T+ SSL KH
Sbjct: 373 IHTGEKPYVCTVPGCDKRFTEYSSLYKH 400
>sp|Q58DZ6|ZN143_XENTR Zinc finger protein 143 OS=Xenopus tropicalis GN=znf143 PE=2 SV=2
Length = 567
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+ +KPY C EENCTK + L+KH++T GE
Sbjct: 285 TGEKPYRCSEENCTKSFKTSGDLQKHVRTHTGE 317
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 9 LLSSQKPYVCGEENCTKRYTDPSSLRKH 36
+ + +KPYVC C KR+T+ SSL KH
Sbjct: 373 IHTGEKPYVCTVPGCDKRFTEYSSLYKH 400
>sp|Q8N9L1|ZIC4_HUMAN Zinc finger protein ZIC 4 OS=Homo sapiens GN=ZIC4 PE=1 SV=3
Length = 334
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+S KPY C C K YT PSSLRKH+K VHG
Sbjct: 259 TSDKPYTCKVRGCDKCYTHPSSLRKHMK-VHGR 290
>sp|P39768|OPA_DROME Pair-rule protein odd-paired OS=Drosophila melanogaster GN=opa PE=2
SV=2
Length = 609
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHG 42
+S KPY C C K YT PSSLRKH+K VHG
Sbjct: 346 TSDKPYNCRINGCDKSYTHPSSLRKHMK-VHG 376
>sp|A6QQW0|ZN143_BOVIN Zinc finger protein 143 OS=Bos taurus GN=ZNF143 PE=2 SV=1
Length = 613
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+ +KPY C E+NCTK + L+KHI+T GE
Sbjct: 267 TGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGE 299
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKGMPSK 57
+ +KPYVC C KR+T+ SSL KH VH N H G K
Sbjct: 357 TGEKPYVCTVPGCDKRFTEYSSLYKH-HVVHTHSKPYNCNHCGKTYK 402
>sp|P52747|ZN143_HUMAN Zinc finger protein 143 OS=Homo sapiens GN=ZNF143 PE=1 SV=2
Length = 638
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+ +KPY C E+NCTK + L+KHI+T GE
Sbjct: 292 TGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGE 324
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKGMPSK 57
+ +KPYVC C KR+T+ SSL KH VH N H G K
Sbjct: 382 TGEKPYVCTVPGCDKRFTEYSSLYKH-HVVHTHSKPYNCNHCGKTYK 427
>sp|O70230|ZN143_MOUSE Zinc finger protein 143 OS=Mus musculus GN=Znf143 PE=1 SV=2
Length = 638
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+ +KPY C E+NCTK + L+KHI+T GE
Sbjct: 292 TGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGE 324
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKGMPSK 57
+ +KPYVC C KR+T+ SSL KH VH N H G K
Sbjct: 382 TGEKPYVCTVPGCDKRFTEYSSLYKH-HVVHTHSKPYNCNHCGKTYK 427
>sp|Q5XIU2|ZN143_RAT Zinc finger protein 143 OS=Rattus norvegicus GN=Znf143 PE=2 SV=2
Length = 638
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+ +KPY C E+NCTK + L+KHI+T GE
Sbjct: 292 TGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGE 324
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKGMPSK 57
+ +KPYVC C KR+T+ SSL KH VH N H G K
Sbjct: 382 TGEKPYVCTVPGCDKRFTEYSSLYKH-HVVHTHSKPYNCNHCGKTYK 427
>sp|Q9IB89|ZIC5_XENLA Zinc finger protein ZIC 5 OS=Xenopus laevis GN=zic5 PE=2 SV=1
Length = 515
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHC 45
+S KPY C C K YT PSSLRKH+K HC
Sbjct: 397 TSDKPYYCKVRGCDKSYTHPSSLRKHMKI----HC 427
>sp|P0CG23|ZN853_HUMAN Zinc finger protein 853 OS=Homo sapiens GN=ZNF853 PE=2 SV=1
Length = 659
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEH------CYANKKHKGMPSKDKDGLGG 64
+ ++PY CG +C KR++ S+L +H +T GE C +HK + + L G
Sbjct: 564 TGERPYACG--DCGKRFSVSSNLLRHRRTHSGERPYVCEDCGERFRHKVQIRRHERQLHG 621
Query: 65 ASPSRSDDMPLSAKTASVSSPSIKSEVSVDLDP 97
A SR + +++ A++ P+ + + P
Sbjct: 622 AGRSRGLGLLRASRPAALGGPARAEQAATATAP 654
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYA 47
+ +KPY C C KR+++ S+L +H +T GE YA
Sbjct: 536 TGEKPYAC--SYCAKRFSESSALVQHQRTHTGERPYA 570
>sp|Q7TQ40|ZIC5_MOUSE Zinc finger protein ZIC 5 OS=Mus musculus GN=Zic5 PE=1 SV=1
Length = 622
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHC 45
+S KPY C C K YT PSSLRKH+K HC
Sbjct: 505 TSDKPYYCKIRGCDKSYTHPSSLRKHMKI----HC 535
>sp|Q96T25|ZIC5_HUMAN Zinc finger protein ZIC 5 OS=Homo sapiens GN=ZIC5 PE=1 SV=2
Length = 663
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHC 45
+S KPY C C K YT PSSLRKH+K HC
Sbjct: 546 TSDKPYYCKIRGCDKSYTHPSSLRKHMKI----HC 576
>sp|Q0GGX2|ZN541_MOUSE Zinc finger protein 541 OS=Mus musculus GN=Znf541 PE=1 SV=1
Length = 1363
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHG 42
KP+VC E+ C+K Y D SLR+H + HG
Sbjct: 194 KPFVCIEQGCSKSYCDYRSLRRHYEVQHG 222
>sp|Q9H0D2|ZN541_HUMAN Zinc finger protein 541 OS=Homo sapiens GN=ZNF541 PE=2 SV=2
Length = 1365
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHG 42
KP+VC E+ C+K Y D SLR+H + HG
Sbjct: 194 KPFVCIEQGCSKSYCDYRSLRRHYEVHHG 222
>sp|A0JC51|ZIC4_XENLA Zinc finger protein ZIC 4 OS=Xenopus laevis GN=zic4 PE=2 SV=1
Length = 530
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHC 45
+S KPY C C K YT PSSLRKH+K HC
Sbjct: 414 TSDKPYNCKVRGCDKSYTHPSSLRKHMKV----HC 444
>sp|Q96JL9|ZN333_HUMAN Zinc finger protein 333 OS=Homo sapiens GN=ZNF333 PE=2 SV=3
Length = 665
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYA 47
+ +KPYVC E C + +++PSSLRKH +T G+ YA
Sbjct: 557 TGEKPYVCQE--CGRAFSEPSSLRKHARTHSGKKPYA 591
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+ +KPY C ++C K + PSSLR H++T GE
Sbjct: 445 TGEKPYEC--KDCGKAFNQPSSLRSHVRTHTGE 475
>sp|Q5EAC5|ZN410_BOVIN Zinc finger protein 410 OS=Bos taurus GN=ZNF410 PE=2 SV=1
Length = 467
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 13 QKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+KP+VC E NC K++T +L+ H++ GE
Sbjct: 276 EKPFVCPESNCGKQFTTAGNLKNHLRIHTGE 306
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+ +KP++C + C + + + SSLRKH+ GE
Sbjct: 304 TGEKPFLCEAQGCGRSFAEYSSLRKHLVVHSGE 336
>sp|P41696|AZF1_YEAST Asparagine-rich zinc finger protein AZF1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=AZF1 PE=1
SV=1
Length = 914
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 2 KLNLAYPLLSSQK--PYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYA 47
K NLA L++ QK P+VC ENC K +T +++ H H E A
Sbjct: 661 KGNLAAHLVTHQKLKPFVCKLENCNKTFTQLGNMKAHQNRFHKETLNA 708
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYA 47
KP+VC + C KR+T +LR H + GE Y+
Sbjct: 619 KPFVC--DYCGKRFTQGGNLRTHERLHTGEKPYS 650
>sp|P34694|TF3A_ANAAE Transcription factor IIIA OS=Anaxyrus americanus GN=gtf3a PE=2 SV=1
Length = 339
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 2 KLNLAYPLLSSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKGMPSKDKDG 61
+L + + ++Q+P+ C E C K Y PS L++H KT H G P +
Sbjct: 120 QLKIHQYIHTNQQPFKCSHEGCDKCYASPSRLKRHEKT-----------HAGYPCRKDST 168
Query: 62 LGGASPSRSDDMPLSAKTASVSSPSI 87
+ SD M +A+ S + SI
Sbjct: 169 CPFVGKTWSDYMKHAAELHSEVTCSI 194
>sp|O60481|ZIC3_HUMAN Zinc finger protein ZIC 3 OS=Homo sapiens GN=ZIC3 PE=1 SV=1
Length = 467
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKT 39
+S KPY+C + C K YT PSSLRKH+K
Sbjct: 383 TSDKPYIC--KVCDKSYTHPSSLRKHMKV 409
>sp|Q62521|ZIC3_MOUSE Zinc finger protein ZIC 3 OS=Mus musculus GN=Zic3 PE=1 SV=2
Length = 466
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKT 39
+S KPY+C + C K YT PSSLRKH+K
Sbjct: 382 TSDKPYIC--KVCDKSYTHPSSLRKHMKV 408
>sp|Q6DJQ6|ZIC3_XENTR Zinc finger protein ZIC 3 OS=Xenopus tropicalis GN=zic3 PE=2 SV=1
Length = 441
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKT 39
+S KPY+C + C K YT PSSLRKH+K
Sbjct: 354 TSDKPYIC--KVCDKSYTHPSSLRKHMKV 380
>sp|O57311|ZIC3_XENLA Zinc finger protein ZIC 3 OS=Xenopus laevis GN=zic3 PE=2 SV=3
Length = 441
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKT 39
+S KPY+C + C K YT PSSLRKH+K
Sbjct: 354 TSDKPYIC--KVCDKSYTHPSSLRKHMKV 380
>sp|Q8VHT7|TF3A_MOUSE Transcription factor IIIA OS=Mus musculus GN=Gtf3a PE=2 SV=2
Length = 364
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 9 LLSSQKPYVCGEENCTKRYTDPSSLRKHIKTVHG 42
+ + +KP+VC ++ C +++ S+L+KHI+ HG
Sbjct: 91 IHTGEKPFVCADDGCNQKFNTKSNLKKHIERKHG 124
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.125 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,700,337
Number of Sequences: 539616
Number of extensions: 1555951
Number of successful extensions: 5868
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 454
Number of HSP's that attempted gapping in prelim test: 4623
Number of HSP's gapped (non-prelim): 1757
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)