RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4019
(109 letters)
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 51.8 bits (125), Expect = 6e-10
Identities = 24/29 (82%), Positives = 25/29 (86%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHG 42
KPYVC CTKRYTDPSSLRKH+KTVHG
Sbjct: 127 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 40.7 bits (96), Expect = 1e-05
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVH-GE 43
KPY+C E C+K +++ S KH H E
Sbjct: 96 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
Score = 34.5 bits (80), Expect = 0.002
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVH-GE 43
KP+ C E C K Y+ +L+ H+++ H GE
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRS-HTGE 95
Score = 31.8 bits (73), Expect = 0.018
Identities = 5/28 (17%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVH 41
+ C++ + L HI + H
Sbjct: 2 TDCRW--DGCSQEFDSQEQLVHHINSEH 27
Score = 29.1 bits (66), Expect = 0.17
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 13 QKPYVCGEENCT---KRYTDPSSLRKHIKTVH-GE 43
+K +VC C+ + + L H++ H GE
Sbjct: 32 RKEFVCHWGGCSRELRPFKAQYMLVVHMRR-HTGE 65
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 41.5 bits (98), Expect = 2e-06
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCY 46
PY C E C KR++ PS L++H K G C
Sbjct: 30 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 62
Score = 30.7 bits (70), Expect = 0.026
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 16 YVCGEENCTKRYTDPSSLRKHIKTVHGE 43
YVC ENC K + + L+ H + +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQ 29
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 39.4 bits (93), Expect = 2e-05
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+ C + CTK + D S++RKH+ T HG
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHT-HGP 32
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+PYVC + C K++ ++L+ HI T
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
Score = 34.0 bits (79), Expect = 0.003
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KP+ C E C KR++ +LR H++ G+
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 90
Score = 30.2 bits (69), Expect = 0.053
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCY 46
+ +VC E C K + + S L++H GE +
Sbjct: 33 RVHVCAE--CGKAFVESSKLKRHQLVHTGEKPF 63
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 39.5 bits (93), Expect = 4e-05
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
K + C + C R+T ++++KH H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNI 100
Score = 39.1 bits (92), Expect = 6e-05
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 13 QKPYVCGEENCTKRYTDPSSLRKHIKTVH-GEHCY 46
Q PY C E C KR++ PS L++H K H G C
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYPCK 165
Score = 33.7 bits (78), Expect = 0.005
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVH-GE 43
KP+ C EE C K +T L +H T H GE
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRHSLT-HTGE 70
Score = 31.8 bits (73), Expect = 0.022
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVH-GE 43
K Y+C +C Y L+ H+ H GE
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCK-HTGE 40
Score = 29.9 bits (68), Expect = 0.098
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 13 QKPYVCGEENCTKRYTDPSSLRKHIKTVH-GE 43
YVC ENC K + + L+ H + H +
Sbjct: 102 ICVYVCHFENCGKAFKKHNQLKVHQFS-HTQQ 132
Score = 29.1 bits (66), Expect = 0.17
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 5/31 (16%)
Query: 13 QKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+K C K + + KH+ H +
Sbjct: 165 KKDDSCSF--VGKTW---TLYLKHVAECHQD 190
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 36.3 bits (85), Expect = 1e-04
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KPY C C R+T +++ HI H E
Sbjct: 14 KPYECYI--CHARFTQSGTMKMHILQKHTE 41
Score = 34.4 bits (80), Expect = 0.001
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 12 SQKPYVCGEENCTKRYTDPSSLRKHIKTVH-GE 43
+ + C +C S L H++ H
Sbjct: 42 NVAKFHC--PHCDTVIARKSDLGVHLRKQHSYS 72
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 37.1 bits (87), Expect = 2e-04
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+P++C C KRY S L+ H + GE
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGE 34
Score = 33.3 bits (77), Expect = 0.004
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KPY C ++C +R++ L++H + G
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Score = 33.3 bits (77), Expect = 0.004
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKT 39
KP+ C +C K++ L +H
Sbjct: 93 KPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 29.0 bits (66), Expect = 0.13
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KP+ C C ++++ L+ H +T GE
Sbjct: 65 KPFQCKT--CQRKFSRSDHLKTHTRTHTGE 92
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 36.4 bits (85), Expect = 2e-04
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 13 QKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
QK + C E C K + L++H+K
Sbjct: 36 QKSFSCPEPACGKSFNFKKHLKEHMKLHSDT 66
Score = 36.0 bits (84), Expect = 2e-04
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVH-GE 43
C C + +++ L H K H +
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQ 36
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 37.3 bits (87), Expect = 2e-04
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKT 39
KP+ C E C +R+ + S +KH+
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMHV 144
Score = 33.8 bits (78), Expect = 0.003
Identities = 5/31 (16%), Positives = 9/31 (29%), Gaps = 2/31 (6%)
Query: 13 QKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
Q C + ++ L H+ H
Sbjct: 23 QLSRPKKS--CDRTFSTMHELVTHVTMEHVG 51
Score = 32.6 bits (75), Expect = 0.009
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVH-GE 43
KP+ C C K + +L+ H +T H GE
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRT-HTGE 118
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 34.6 bits (80), Expect = 4e-04
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYA 47
KP+ C C R++ L +H ++ G
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSG 44
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 35.7 bits (83), Expect = 4e-04
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 8 PLLSSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
P L ++ + C CTK YT S L+ H++T GE
Sbjct: 8 PDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGE 43
Score = 34.1 bits (79), Expect = 0.002
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KPY C E C R+ L +H + G
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Score = 30.7 bits (70), Expect = 0.027
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 13 QKPYVCGEENCTKRYTDPSSLRKHIKT 39
KP+ CG C + ++ L H+K
Sbjct: 73 AKPFQCGV--CNRSFSRSDHLALHMKR 97
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 34.5 bits (80), Expect = 6e-04
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHG 42
K Y C C K +T ++ H+K +H
Sbjct: 39 KVYPCPF--CFKEFTRKDNMTAHVKIIHK 65
Score = 33.3 bits (77), Expect = 0.002
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVH 41
Y C C++ YT S+ +H T H
Sbjct: 9 HTYRCKV--CSRVYTHISNFCRHYVTSH 34
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 34.7 bits (80), Expect = 6e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
S + ++C C K Y S L+ H +T GE
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGE 45
Score = 33.1 bits (76), Expect = 0.002
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 13 QKPYVCGEENCTKRYTDPSSLRKHIKT 39
+KP+ C + C +R+ L +H +T
Sbjct: 45 EKPFSCSWKGCERRFARSDELSRHRRT 71
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 34.7 bits (80), Expect = 6e-04
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+ C E C KR+ P S+ H H
Sbjct: 37 LRFPC--EFCGKRFEKPDSVAAHRSKSHPA 64
Score = 28.1 bits (63), Expect = 0.18
Identities = 5/26 (19%), Positives = 7/26 (26%), Gaps = 2/26 (7%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKT 39
C C +SL H +
Sbjct: 6 SGLQCEI--CGFTCRQKASLNWHQRK 29
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 33.5 bits (77), Expect = 7e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+K ++C + C K Y S LR H++ GE
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 34.7 bits (81), Expect = 9e-04
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+PY C E+C +R++ SL +HI+ G+
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQ 32
Score = 29.7 bits (68), Expect = 0.063
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KP+ C C +++ ++H K +
Sbjct: 61 KPFACDI--CGRKFARSDERKRHTKIHLRQ 88
Score = 29.4 bits (67), Expect = 0.085
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 13 QKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
QKP+ C C + ++ L HI+T GE
Sbjct: 32 QKPFQCRI--CMRNFSRSDHLTTHIRTHTGE 60
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 33.7 bits (78), Expect = 0.001
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVH-GE 43
S KPY+C C K ++ P L HIK VH E
Sbjct: 8 SVGKPYICQS--CGKGFSRPDHLNGHIKQVHTSE 39
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 32.6 bits (75), Expect = 0.002
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KP+ C E C ++ SL KH+++
Sbjct: 11 KPFQCKE--CGMNFSWSCSLFKHLRSHERT 38
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 32.4 bits (73), Expect = 0.003
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KPYVC +C +++ DP +L++H++ GE
Sbjct: 2 KPYVCI--HCQRQFADPGALQRHVRIHTGE 29
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 33.0 bits (76), Expect = 0.003
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 4 NLAYPLLSSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
NL ++ +PY C E+C +R++ L +HI+ G+
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQ 47
Score = 26.9 bits (60), Expect = 0.47
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 13 QKPYVCGEENCTKRYTDPSSLRKHIKT 39
QKP+ C C + ++ L HI+T
Sbjct: 47 QKPFQC--RICMRNFSRSDHLTTHIRT 71
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 33.3 bits (77), Expect = 0.003
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KPY C + C ++ L +H + G
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Score = 29.0 bits (66), Expect = 0.11
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 13 QKPYVCGEENCTKRYTDPSSLRKHIKT 39
+P+ C + C + ++ L H+K
Sbjct: 63 HRPFQCQK--CDRAFSRSDHLALHMKR 87
Score = 29.0 bits (66), Expect = 0.12
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+ C C K YT S L+ H++T GE
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGE 33
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 32.5 bits (75), Expect = 0.003
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVH-GE 43
KPY CG C + +T L +H + +H G
Sbjct: 29 KPYPCGL--CNRAFTRRDLLIRHAQKIHSGN 57
Score = 27.8 bits (63), Expect = 0.16
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVH-GE 43
+ +VC CT+ + L++H ++ H E
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRS-HTNE 28
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 33.2 bits (77), Expect = 0.004
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 12 SQKPYVCGEENCTKRYTDPSSLRKHIKTVH-GE 43
KPY+C C K ++ P L HIK VH G
Sbjct: 62 VGKPYICQS--CGKGFSRPDHLNGHIKQVHSGP 92
Score = 27.5 bits (62), Expect = 0.43
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KPY C C R+ + H+++ G
Sbjct: 34 KPYSCPV--CGLRFKRKDRMSYHVRSHDGS 61
Score = 27.5 bits (62), Expect = 0.49
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
C C K + D L +H + GE
Sbjct: 6 SGVACEI--CGKIFRDVYHLNRHKLSHSGE 33
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 32.9 bits (76), Expect = 0.004
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGEH 44
KPY C C K + L H K H +
Sbjct: 14 KPYACSH--CDKTFRQKQLLDMHFKRYHDPN 42
Score = 29.4 bits (67), Expect = 0.075
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+VC + C K +T +++ +H G
Sbjct: 43 FVPAAFVCSK--CGKTFTRRNTMARHADNCAGP 73
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 32.1 bits (74), Expect = 0.005
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+P+ C C+ PS+L KH+K HG+
Sbjct: 36 RPFKCNY--CSFDTKQPSNLSKHMKKFHGD 63
Score = 31.3 bits (72), Expect = 0.011
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
SS P C E C+ + ++LR H + +
Sbjct: 5 SSGHPEKCSE--CSYSCSSKAALRIHERIHCTD 35
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 31.4 bits (72), Expect = 0.005
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+P++C C KR+T L++H +T GE
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 31.3 bits (72), Expect = 0.006
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KPY C C R+ +L+ H++ G
Sbjct: 10 KPYPCEI--CGTRFRHLQTLKSHLRIHTGS 37
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 30.6 bits (69), Expect = 0.013
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 7 YPLLSSQKPYVCGEENCTKRYTDPSSLRKHIKT 39
Y K + C CTK + ++R HI+T
Sbjct: 10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT 42
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 31.3 bits (72), Expect = 0.015
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KP+ C C +++ ++H
Sbjct: 30 KPFACDI--CGRKFARSDERKRHRDI-QHI 56
Score = 28.2 bits (64), Expect = 0.22
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVH-GE 43
KP+ C C + ++ L HI+T H GE
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRT-HTGE 29
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 30.2 bits (69), Expect = 0.015
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVH-GE 43
KPY C E C K + +SL +H + H GE
Sbjct: 11 KPYECIE--CGKAFIQNTSLIRHWRYYHTGE 39
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 29.8 bits (68), Expect = 0.022
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYA 47
KPY C C R+ + LR H+ G +
Sbjct: 10 KPYKCET--CGARFVQVAHLRAHVLIHTGSGPSS 41
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 30.1 bits (67), Expect = 0.027
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 16 YVCGEENCTKRYTDPSSLRKHIKTVHGEHCY 46
Y+C E C R PS L+KHI+T Y
Sbjct: 2 YICEE--CGIRXKKPSMLKKHIRTHTDVRPY 30
Score = 27.8 bits (61), Expect = 0.23
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+ +PY C C + +L KH+K+
Sbjct: 25 TDVRPYHCTY--CNFSFKTKGNLTKHMKSKAHS 55
>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding;
2.74A {Arabidopsis thaliana}
Length = 358
Score = 31.9 bits (71), Expect = 0.029
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 16 YVCGEENCTKRYTDPSSLRKHIKTVHGEH 44
Y CG + CTK + + KH+K H E
Sbjct: 305 YGCGAKGCTKLFHAAEFVYKHLKLKHTEL 333
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 29.2 bits (66), Expect = 0.043
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
PY+CG+ C K +T SL H ++
Sbjct: 10 TPYLCGQ--CGKSFTQRGSLAVHQRSCSQS 37
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 29.1 bits (66), Expect = 0.045
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYA 47
KPY C + C K ++ SL HI+ G +
Sbjct: 10 KPYRCDQ--CGKAFSQKGSLIVHIRVHTGSGPSS 41
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.059
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+PY+C C K +TD S+L KH K GE
Sbjct: 11 RPYICTV--CGKAFTDRSNLIKHQKIHTGE 38
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 28.6 bits (65), Expect = 0.065
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCY 46
KPYVC E C K + S L H +T GE
Sbjct: 11 KPYVCNE--CGKAFRSKSYLIIHTRTHTGESGP 41
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 29.9 bits (67), Expect = 0.067
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 13 QKPYVCGEENCTKRYTDPSSLRKHIKTVH 41
+ +++C + ++ L H+ H
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.078
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KPY+C E C K +T S+L KH K +
Sbjct: 11 KPYICAE--CGKAFTIRSNLIKHQKIHTKQ 38
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.086
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKH 36
KPY C E C K +TD S+L H
Sbjct: 11 KPYRCAE--CGKAFTDRSNLFTH 31
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.097
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
K + C E C ++ SSLR H GE
Sbjct: 11 KTWKCRE--CDMCFSQASSLRLHQNVHVGE 38
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 28.1 bits (63), Expect = 0.12
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 13 QKPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+KPY C E C + ++D + L +H K +
Sbjct: 8 EKPYSCAE--CKETFSDNNRLVQHQKMHTVK 36
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 28.9 bits (66), Expect = 0.13
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KPY C C D SSL KH++ E
Sbjct: 35 KPYKCKT--CDYAAADSSSLNKHLRIHSDE 62
Score = 27.8 bits (63), Expect = 0.31
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
P+ C C K ++ L+ H++ G
Sbjct: 7 GPHKCEV--CGKCFSRKDKLKTHMRCHTGV 34
Score = 27.4 bits (62), Expect = 0.45
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+P+ C C + S L H+++ G+
Sbjct: 63 RPFKCQI--CPYASRNSSQLTVHLRSHTGD 90
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (63), Expect = 0.14
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCY 46
K + C E C K + S+LR H + GE C
Sbjct: 11 KSHTCDE--CGKNFCYISALRIHQRVHMGEKCS 41
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.14
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KPY C + C K +T S LR H K GE
Sbjct: 11 KPYKCSD--CGKSFTWKSRLRIHQKCHTGE 38
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 29.0 bits (66), Expect = 0.17
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVH-GE 43
PY C C++++ L+ H+ +H G
Sbjct: 93 MPYKCSS--CSQQFMQKKDLQSHMIKLHSGP 121
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 27.6 bits (61), Expect = 0.18
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYA 47
++K C E C K + D L +H + GE Y+
Sbjct: 8 RTRKQVAC--EICGKIFRDVYHLNRHKLSHSGEKPYS 42
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.19
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KP C E C K + S L H +T +
Sbjct: 11 KPCKCTE--CGKAFCWKSQLIMHQRTHVDD 38
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 28.2 bits (64), Expect = 0.19
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVH-GE 43
KPY C C + +L H KTVH GE
Sbjct: 16 KPYKCDR--CQASFRYKGNLASH-KTVHTGE 43
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type
zinc finger, KIAA0530, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 73
Score = 28.0 bits (61), Expect = 0.20
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 2 KLNLAYPLLSSQKPYVCGEENCTKRYTDPSSLRKHIKTVH 41
+ S +PY C + C +T +L H + VH
Sbjct: 14 QSLEFPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVH 53
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 28.1 bits (62), Expect = 0.20
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 12 SQKPYVCGEENCTKRYTDPSSLRKHIKTVH 41
+P C E+C D +S+ HI H
Sbjct: 35 PMEPLACNWEDCDFLGDDTASIVNHINAQH 64
Score = 27.3 bits (60), Expect = 0.38
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 16 YVCGEENCTKRYTDPSSLRKHIKTVH 41
C + C + + L++H+ H
Sbjct: 2 LKCKWKECPESASSLFDLQRHLLKDH 27
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.22
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
P++C E C K +T ++L H K GE
Sbjct: 11 NPFICSE--CGKVFTHKTNLIIHQKIHTGE 38
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA
binding protein; NMR {Escherichia coli} SCOP: k.12.1.1
PDB: 2ab7_A
Length = 29
Score = 26.5 bits (58), Expect = 0.31
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 16 YVCGEENCTKRYTDPSSLRKHIKTVH 41
YVC ENC + + D L +H K +H
Sbjct: 3 YVCHFENCGRSFNDRRKLNRH-KKIH 27
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 26.6 bits (58), Expect = 0.31
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIK 38
KPYVC E C KR+ S L HI+
Sbjct: 1 KPYVC--ERCGKRFVQSSQLANHIR 23
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.36
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKH 36
KPYVC C K + + L +H
Sbjct: 11 KPYVCDY--CGKAFGLSAELVRH 31
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 26.4 bits (58), Expect = 0.47
Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHC 45
+ + P+ C + C + +T + L +H +T +
Sbjct: 8 AGENPFKCSK--CDRVFTQRNYLVQHERTHARKSG 40
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 27.8 bits (63), Expect = 0.49
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KPY C E C K ++ +L H +T G+
Sbjct: 160 KPYKCPE--CGKSFSRRDALNVHQRTHTGK 187
Score = 27.8 bits (63), Expect = 0.50
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKH 36
KPY C E C K ++ + LR H
Sbjct: 104 KPYACPE--CGKSFSQLAHLRAH 124
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.50
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKH 36
KPY CGE C K + ++L +H
Sbjct: 11 KPYRCGE--CGKAFAQKANLTQH 31
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 26.2 bits (57), Expect = 0.51
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 10 LSSQKPYVCGEENCTKRYTDPSSLRKHIK 38
+S KP++C C +R+T+ L H
Sbjct: 1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKH 29
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 25.7 bits (56), Expect = 0.68
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKT 39
+PY C C K + L +H K+
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKS 27
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 25.8 bits (57), Expect = 0.70
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 13 QKPYVCGEENCTKRYTDPSSLRKHIKT 39
KP+ C +C + ++ L H K
Sbjct: 9 IKPFQC--PDCDRSFSRSDHLALHRKR 33
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 25.9 bits (56), Expect = 0.72
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVHG 42
S YVC C K++ LR HI+ VHG
Sbjct: 3 SGSSGYVCAL--CLKKFVSSIRLRSHIREVHG 32
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 24.9 bits (53), Expect = 5.2
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYA 47
K C E C + + S+ +H VH ++ A
Sbjct: 68 KKLTCLE--CMRTFKSSFSIWRHQVEVHNQNNMA 99
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase;
HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 25.1 bits (55), Expect = 6.5
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 21 ENCTKRYTDPSSLRKHIKTVHGEHC 45
C K Y DP R H + V C
Sbjct: 71 PACDKEYRDPLDRRFHAQPVACPEC 95
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 23.1 bits (49), Expect = 6.9
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 16 YVCGEENCTKRYTDPSSLRKHIKT 39
+ C C KR+ +L KHIKT
Sbjct: 3 FACPA--CPKRFMRSDALSKHIKT 24
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 24.5 bits (52), Expect = 6.9
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+VC C ++ SL++HI+
Sbjct: 73 SQFVC--PLCLMPFSSSVSLKQHIRYTEHT 100
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin
polymerization, protein binding; 2.29A {Homo sapiens}
Length = 279
Score = 24.5 bits (52), Expect = 8.5
Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 1/85 (1%)
Query: 8 PLLSSQKPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCYANKKHKGMPSKDKDGLGGASP 67
P L+ PY + K YT+PS K + +K+ + K K+ G S
Sbjct: 132 PPLNILTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDT-EDKRKEKRKQKQKNLDRGGSG 190
Query: 68 SRSDDMPLSAKTASVSSPSIKSEVS 92
S PS +S
Sbjct: 191 GSGGSGGSGGSGGSKRHPSTLPVIS 215
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.125 0.358
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,456,313
Number of extensions: 69553
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 128
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (23.6 bits)