RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4019
(109 letters)
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 52.6 bits (126), Expect = 1e-11
Identities = 24/29 (82%), Positives = 25/29 (86%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHG 42
KPYVC CTKRYTDPSSLRKH+KTVHG
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG 29
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 37.7 bits (88), Expect = 7e-06
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVH-GEHCY 46
S KPY+C C K ++ P L HIK VH E +
Sbjct: 1 SVGKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPH 35
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 37.3 bits (87), Expect = 1e-05
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KP+ C E C K Y+ +L+ H+++ GE
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 36.9 bits (86), Expect = 1e-05
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKT 39
+PYVC + C K++ ++L+ HI T
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILT 26
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 36.5 bits (85), Expect = 2e-05
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KPY C C R+T +++ HI H E
Sbjct: 7 KPYECYI--CHARFTQSGTMKMHILQKHTE 34
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 36.1 bits (84), Expect = 3e-05
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+P++C C KR+T L++H +T GE
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 35.4 bits (82), Expect = 6e-05
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKT 39
+PY C C K + L +H K+
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKS 27
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 35.0 bits (81), Expect = 8e-05
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKT 39
+PY C E+C +R++ + L +HI+
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRI 26
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 35.0 bits (81), Expect = 8e-05
Identities = 10/30 (33%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KPY C C K + L H K H
Sbjct: 7 KPYACSH--CDKTFRQKQLLDMHFKRYHDP 34
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 34.5 bits (80), Expect = 1e-04
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KPY C E C K ++ S L +H + GE
Sbjct: 6 KPYGCVE--CGKAFSRSSILVQHQRVHTGE 33
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 34.3 bits (79), Expect = 1e-04
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KP+ C E C KR++ +LR H++ G+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 34.3 bits (79), Expect = 2e-04
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 16 YVCGEENCTKRYTDPSSLRKHIKTVHGEHCY 46
+ C E C K + L++H+K Y
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 32
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 32.7 bits (75), Expect = 5e-04
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
K + C E C KR+ L KHIKT +
Sbjct: 1 KKFACPE--CPKRFMRSDHLSKHIKTHQNK 28
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 32.2 bits (74), Expect = 8e-04
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+ +VC CT+ + L++H ++ E
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNE 28
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 31.0 bits (71), Expect = 0.002
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 13 QKPYVCGEENCTKRYTDPSSLRKHIKT 39
QKP+ C C + ++ L HI+T
Sbjct: 1 QKPFQCRI--CMRNFSRSDHLTTHIRT 25
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 31.1 bits (70), Expect = 0.003
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
K + C CTK + ++R HI+T +
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 30.8 bits (69), Expect = 0.003
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 13 QKPYVCGEENCTKRYTDPSSLRKHIKT 39
Q PY C E C KR++ PS L++H K
Sbjct: 1 QLPYECPHEGCDKRFSLPSRLKRHEKV 27
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 29.9 bits (67), Expect = 0.007
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVH 41
KPY+C E C+K +++ S KH H
Sbjct: 1 KPYMCEHEGCSKAFSNASDRAKHQNRTH 28
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 28.9 bits (65), Expect = 0.020
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKT 39
KP+ C +C + ++ L H K
Sbjct: 10 KPFQC--PDCDRSFSRSDHLALHRKR 33
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 28.6 bits (64), Expect = 0.024
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+ Y C E C K ++ S L KH +T GE
Sbjct: 11 RRYKCDE--CGKSFSHSSDLSKHRRTHTGE 38
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 28.5 bits (63), Expect = 0.040
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGEHCY 46
K Y C C K +T S +H+ G Y
Sbjct: 2 KLYPC---QCGKSFTHKSQRDRHMSMHLGLRPY 31
Score = 23.5 bits (50), Expect = 3.0
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 15 PYVCGEENCTKRYTDPSSLRKHIKT 39
PY CG C K++ L H+K
Sbjct: 30 PYGCGV--CGKKFKMKHHLVGHMKI 52
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 26.4 bits (58), Expect = 0.16
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 16 YVCGEENCTKRYTDPSSLRKHIKTVHGE 43
Y+C E C R PS L+KHI+T
Sbjct: 2 YICEE--CGIRAKKPSMLKKHIRTHTDV 27
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 26.3 bits (58), Expect = 0.17
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKT 39
S ++P+VC C +T ++ +H+K
Sbjct: 3 SGKRPFVCRI--CLSAFTTKANCARHLKV 29
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 26.2 bits (57), Expect = 0.18
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
KP+ C EE C K +T L +H T GE
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 30
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 25.6 bits (56), Expect = 0.28
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 10 LSSQKPYVCGEENCTKRYTDPSSLRKHIK 38
+S KP++C C +R+T+ L H
Sbjct: 1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKH 29
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.3 bits (55), Expect = 0.32
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 18 CGEENCTKRYTDPSSLRKHIKTVHG 42
C + CTK + D S++RKH+ T HG
Sbjct: 4 CPHKGCTKMFRDNSAMRKHLHT-HG 27
>d1r53a_ d.258.1.1 (A:) Chorismate synthase, AroC {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 371
Score = 26.9 bits (59), Expect = 0.55
Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 46 YANKKHKGMPSKDKDGLGGASPSRSDDMPLSAKTASVSSPSI-KSEVSVDLD 96
+ +K + GG S+ + S +I + + + D
Sbjct: 275 FYFEKETNRLRTKTNNSGGVQGGISNGENIYFSVPFKSVATISQEQKTATYD 326
>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 32
Score = 24.8 bits (54), Expect = 0.58
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 18 CGEENCTKRYTDPSSLRKHIKTVHGEHCYANK 49
C + C++ + L HI + EH + +
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINS---EHIHGER 32
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 24.3 bits (52), Expect = 0.83
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
K Y C + C R D S+L+ HIKT H +
Sbjct: 1 KTYQC--QYCEFRSADSSNLKTHIKTKHSK 28
>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 23.9 bits (51), Expect = 1.1
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVH 41
K + C + C R+T ++++KH H
Sbjct: 1 KNFTCDSDGCDLRFTTKANMKKHFNRFH 28
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.8 bits (51), Expect = 1.5
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 14 KPYVCGEENCTKRYTDPSSLRKHIKTVHGE 43
+P+ C C+ PS+L KH+K HG+
Sbjct: 1 RPFKC--NYCSFDTKQPSNLSKHMKKFHGD 28
>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 23.9 bits (51), Expect = 2.1
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 11 SSQKPYVCGEENCTKRYTDPSSLRKHIKTVH 41
S +PY C + C +T +L H + VH
Sbjct: 16 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVH 46
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 23.4 bits (50), Expect = 2.5
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 16 YVCGEENCTKRYTDPSSLRKHIKTVHG 42
CG C K +TD + LR+H + HG
Sbjct: 7 LPCG--LCGKVFTDANRLRQH-EAQHG 30
>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 28
Score = 22.8 bits (48), Expect = 3.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 16 YVCGEENCTKRYTDPSSLRKH 36
YVC ENC K + + L+ H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVH 22
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 121
Score = 23.6 bits (51), Expect = 4.1
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 23 CTKRYTDPSSLRKHIKTVHGEHCYANKKHKGM 54
C + + H K H + + G+
Sbjct: 21 CDRLFASAEETFSHCKLEHQFNIDSMVHKHGL 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.125 0.358
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 360,110
Number of extensions: 13609
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 38
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.4 bits)