Query psy4020
Match_columns 530
No_of_seqs 336 out of 1516
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 23:22:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1062|consensus 100.0 1E-100 3E-105 808.8 45.1 512 15-530 60-857 (866)
2 KOG1077|consensus 100.0 6.1E-64 1.3E-68 521.6 47.0 502 15-522 64-808 (938)
3 PTZ00429 beta-adaptin; Provisi 100.0 1.4E-58 3.1E-63 511.0 36.6 342 8-363 49-438 (746)
4 PF01602 Adaptin_N: Adaptin N 100.0 3.7E-53 8E-58 462.5 33.7 359 8-378 23-427 (526)
5 KOG1059|consensus 100.0 6E-53 1.3E-57 441.3 30.3 361 1-372 38-456 (877)
6 KOG1061|consensus 100.0 1.3E-46 2.8E-51 400.4 25.1 351 7-372 29-429 (734)
7 KOG1058|consensus 100.0 1.1E-45 2.4E-50 388.0 25.6 352 9-372 38-439 (948)
8 KOG1060|consensus 100.0 1.8E-44 3.9E-49 380.6 28.8 329 6-343 50-449 (968)
9 COG5096 Vesicle coat complex, 100.0 1.4E-37 3E-42 337.5 26.9 331 6-343 34-417 (757)
10 KOG1078|consensus 100.0 2.4E-32 5.2E-37 289.9 24.5 354 14-380 46-444 (865)
11 COG5240 SEC21 Vesicle coat com 100.0 8.9E-31 1.9E-35 268.9 25.3 353 15-380 48-465 (898)
12 PF02883 Alpha_adaptinC2: Adap 99.9 2.3E-23 5E-28 181.6 13.4 106 421-530 1-111 (115)
13 KOG1086|consensus 99.9 7.1E-24 1.5E-28 211.6 8.1 122 406-530 451-582 (594)
14 smart00809 Alpha_adaptinC2 Ada 99.9 6E-21 1.3E-25 163.3 13.9 100 425-530 1-100 (104)
15 KOG1062|consensus 99.4 2.9E-12 6.2E-17 138.2 16.4 309 91-416 101-436 (866)
16 PF01602 Adaptin_N: Adaptin N 99.3 3.5E-11 7.6E-16 131.7 15.1 351 41-413 27-388 (526)
17 PTZ00429 beta-adaptin; Provisi 99.1 4.5E-08 9.8E-13 109.9 26.6 307 8-327 8-338 (746)
18 PRK09687 putative lyase; Provi 99.0 3.7E-08 8.1E-13 99.1 20.5 238 62-333 23-262 (280)
19 PRK09687 putative lyase; Provi 98.9 8.8E-07 1.9E-11 89.2 23.9 248 29-311 27-278 (280)
20 PRK13800 putative oxidoreducta 98.7 2.1E-06 4.6E-11 100.0 25.0 228 63-334 622-849 (897)
21 PRK13800 putative oxidoreducta 98.6 7E-06 1.5E-10 95.7 22.6 258 28-334 624-881 (897)
22 KOG1059|consensus 98.4 0.00021 4.5E-09 77.6 27.3 274 11-289 62-410 (877)
23 PF10508 Proteasom_PSMB: Prote 98.3 0.00065 1.4E-08 74.2 30.0 248 29-278 81-364 (503)
24 PF10508 Proteasom_PSMB: Prote 98.3 0.00048 1E-08 75.3 28.9 283 30-317 43-368 (503)
25 KOG1824|consensus 98.3 0.0001 2.2E-09 81.9 21.8 269 15-296 760-1054(1233)
26 PLN03200 cellulose synthase-in 98.1 0.00071 1.5E-08 82.8 26.1 295 30-335 409-747 (2102)
27 KOG0212|consensus 98.1 0.00072 1.6E-08 71.8 22.4 306 30-341 5-395 (675)
28 PLN03200 cellulose synthase-in 98.1 0.0031 6.7E-08 77.5 30.2 279 26-315 489-811 (2102)
29 PF12717 Cnd1: non-SMC mitotic 98.0 0.00017 3.8E-09 67.6 15.2 105 75-180 1-110 (178)
30 KOG2171|consensus 98.0 0.00096 2.1E-08 76.2 23.2 253 76-334 326-613 (1075)
31 KOG1058|consensus 98.0 0.00045 9.8E-09 75.4 19.0 275 92-378 95-409 (948)
32 KOG0166|consensus 97.9 0.0008 1.7E-08 72.0 19.7 283 28-316 69-394 (514)
33 PF12717 Cnd1: non-SMC mitotic 97.8 0.00028 6.1E-09 66.2 12.8 143 227-372 1-152 (178)
34 COG5240 SEC21 Vesicle coat com 97.8 0.0015 3.4E-08 69.4 18.5 260 44-312 246-552 (898)
35 COG1413 FOG: HEAT repeat [Ener 97.8 0.0016 3.6E-08 67.1 18.7 218 26-303 44-261 (335)
36 PF05804 KAP: Kinesin-associat 97.8 0.016 3.6E-07 65.1 27.5 284 64-369 292-617 (708)
37 KOG2171|consensus 97.7 0.017 3.8E-07 66.3 27.1 114 221-334 396-523 (1075)
38 KOG2259|consensus 97.7 0.01 2.2E-07 64.4 22.5 274 57-334 153-512 (823)
39 KOG1078|consensus 97.5 0.0059 1.3E-07 67.3 18.6 237 71-314 254-531 (865)
40 KOG0212|consensus 97.5 0.056 1.2E-06 57.9 25.0 256 28-287 87-413 (675)
41 PF13646 HEAT_2: HEAT repeats; 97.5 0.00068 1.5E-08 55.2 8.7 75 65-149 2-77 (88)
42 KOG1060|consensus 97.5 0.088 1.9E-06 58.5 26.8 241 66-316 75-351 (968)
43 KOG1077|consensus 97.4 0.013 2.8E-07 64.0 19.8 319 77-412 92-451 (938)
44 KOG2023|consensus 97.4 0.021 4.6E-07 62.0 21.3 251 80-334 376-752 (885)
45 PF04826 Arm_2: Armadillo-like 97.4 0.0098 2.1E-07 59.0 17.6 162 73-241 24-203 (254)
46 KOG0166|consensus 97.3 0.038 8.2E-07 59.4 21.9 209 30-244 157-394 (514)
47 PF04826 Arm_2: Armadillo-like 97.1 0.058 1.3E-06 53.5 19.1 175 100-278 15-203 (254)
48 KOG1248|consensus 97.1 0.18 3.8E-06 58.6 24.9 285 4-296 590-910 (1176)
49 KOG1242|consensus 97.1 0.25 5.5E-06 53.7 24.4 220 15-244 202-445 (569)
50 KOG1061|consensus 97.0 0.3 6.5E-06 54.4 24.3 313 58-376 117-546 (734)
51 KOG1242|consensus 96.9 0.17 3.7E-06 54.9 21.9 287 20-317 129-446 (569)
52 KOG0213|consensus 96.9 0.062 1.3E-06 59.2 18.3 251 63-317 477-747 (1172)
53 PF05918 API5: Apoptosis inhib 96.9 0.11 2.3E-06 56.8 20.4 127 98-238 24-157 (556)
54 COG5096 Vesicle coat complex, 96.9 0.11 2.4E-06 58.4 20.6 263 62-334 55-383 (757)
55 KOG0414|consensus 96.8 0.035 7.6E-07 64.0 16.1 211 62-334 923-1136(1251)
56 KOG1824|consensus 96.8 0.64 1.4E-05 52.9 24.9 283 38-334 832-1152(1233)
57 TIGR02270 conserved hypothetic 96.7 0.78 1.7E-05 48.8 24.3 107 191-314 160-266 (410)
58 cd00020 ARM Armadillo/beta-cat 96.5 0.017 3.6E-07 49.3 8.9 100 215-314 8-119 (120)
59 KOG1241|consensus 96.5 0.23 5E-06 55.1 19.0 235 56-295 49-301 (859)
60 KOG1020|consensus 96.4 0.16 3.4E-06 60.2 17.9 143 191-334 789-939 (1692)
61 TIGR02270 conserved hypothetic 96.3 0.56 1.2E-05 49.9 20.5 221 25-287 54-274 (410)
62 KOG2259|consensus 96.3 0.67 1.5E-05 50.9 20.9 261 67-333 203-526 (823)
63 KOG1248|consensus 96.3 3.4 7.5E-05 48.4 28.9 262 44-319 516-818 (1176)
64 PF05804 KAP: Kinesin-associat 96.2 3.1 6.7E-05 47.3 27.6 280 29-315 294-649 (708)
65 KOG1241|consensus 96.2 2.4 5.2E-05 47.4 24.6 302 28-334 322-730 (859)
66 PF02985 HEAT: HEAT repeat; I 96.1 0.011 2.4E-07 38.4 4.3 30 98-127 1-30 (31)
67 PF12348 CLASP_N: CLASP N term 96.1 0.037 8E-07 53.7 9.8 109 28-136 97-216 (228)
68 PF13513 HEAT_EZ: HEAT-like re 96.0 0.022 4.7E-07 42.2 6.2 49 76-124 1-55 (55)
69 PF12348 CLASP_N: CLASP N term 96.0 0.11 2.4E-06 50.3 12.9 133 191-324 66-215 (228)
70 KOG0213|consensus 96.0 1.4 3E-05 49.2 21.6 123 210-334 837-971 (1172)
71 KOG0414|consensus 96.0 0.036 7.7E-07 63.9 10.1 121 30-150 924-1051(1251)
72 cd00020 ARM Armadillo/beta-cat 96.0 0.026 5.7E-07 48.0 7.3 87 64-150 9-107 (120)
73 KOG1240|consensus 95.9 1.2 2.5E-05 52.2 21.6 86 61-149 425-522 (1431)
74 PF13646 HEAT_2: HEAT repeats; 95.9 0.035 7.6E-07 45.0 7.5 82 30-121 4-87 (88)
75 KOG2160|consensus 95.9 0.21 4.6E-06 51.0 14.2 102 70-171 132-247 (342)
76 KOG1020|consensus 95.8 4.9 0.00011 48.3 26.4 102 65-167 819-924 (1692)
77 COG5215 KAP95 Karyopherin (imp 95.7 4 8.7E-05 44.4 24.5 247 32-283 30-295 (858)
78 KOG4224|consensus 95.7 0.46 1E-05 48.7 15.5 273 30-316 90-406 (550)
79 PF12755 Vac14_Fab1_bd: Vacuol 95.6 0.091 2E-06 44.1 8.8 68 209-277 22-93 (97)
80 COG1413 FOG: HEAT repeat [Ener 95.6 0.73 1.6E-05 47.4 17.5 198 62-313 43-240 (335)
81 PF10363 DUF2435: Protein of u 95.6 0.053 1.1E-06 45.1 7.2 67 64-130 5-76 (92)
82 KOG1240|consensus 95.6 0.68 1.5E-05 54.0 17.9 212 62-281 462-726 (1431)
83 PF14500 MMS19_N: Dos2-interac 95.5 1.6 3.5E-05 43.5 18.9 226 101-335 3-258 (262)
84 KOG4199|consensus 95.5 3.5 7.6E-05 42.1 22.1 287 66-366 81-411 (461)
85 PF05918 API5: Apoptosis inhib 95.5 3.8 8.2E-05 45.0 22.8 103 27-130 25-129 (556)
86 PF12460 MMS19_C: RNAPII trans 95.5 1.2 2.6E-05 47.5 19.1 215 40-259 163-410 (415)
87 KOG2023|consensus 95.2 1.1 2.4E-05 49.3 17.2 190 92-288 85-293 (885)
88 KOG0915|consensus 95.0 3.5 7.6E-05 49.5 21.8 289 29-334 1043-1363(1702)
89 PF10633 NPCBM_assoc: NPCBM-as 95.0 0.093 2E-06 42.0 6.8 74 445-518 5-78 (78)
90 COG5181 HSH155 U2 snRNP splice 94.9 0.65 1.4E-05 50.6 14.4 248 63-317 282-552 (975)
91 PF12755 Vac14_Fab1_bd: Vacuol 94.8 0.15 3.2E-06 42.9 7.7 60 91-150 21-84 (97)
92 KOG1949|consensus 94.8 4.3 9.4E-05 45.1 20.4 188 91-284 167-374 (1005)
93 COG5098 Chromosome condensatio 94.7 0.12 2.5E-06 56.8 8.4 149 30-179 897-1052(1128)
94 KOG0168|consensus 94.6 2 4.4E-05 48.5 17.7 239 81-319 313-633 (1051)
95 COG5215 KAP95 Karyopherin (imp 94.3 5.5 0.00012 43.4 19.4 254 79-333 348-686 (858)
96 KOG1943|consensus 94.0 3.1 6.8E-05 48.3 18.1 227 91-319 335-577 (1133)
97 smart00638 LPD_N Lipoprotein N 93.6 10 0.00022 42.3 21.5 102 194-304 462-567 (574)
98 PF12719 Cnd3: Nuclear condens 93.4 1.7 3.7E-05 44.2 13.8 97 219-315 32-143 (298)
99 KOG1293|consensus 93.3 14 0.0003 40.9 20.8 83 199-281 444-534 (678)
100 KOG4653|consensus 93.3 12 0.00025 42.8 20.6 218 97-317 727-969 (982)
101 PF12231 Rif1_N: Rap1-interact 93.2 7.7 0.00017 40.8 18.7 239 35-273 3-296 (372)
102 PF14796 AP3B1_C: Clathrin-ada 93.2 0.42 9.2E-06 43.0 7.8 71 427-498 65-138 (145)
103 PF01347 Vitellogenin_N: Lipop 93.2 1.5 3.3E-05 49.1 14.3 208 58-306 395-613 (618)
104 PF12719 Cnd3: Nuclear condens 93.1 2.5 5.4E-05 42.9 14.4 60 98-158 28-87 (298)
105 PF12830 Nipped-B_C: Sister ch 92.8 0.95 2.1E-05 42.8 10.1 69 65-133 11-81 (187)
106 COG5218 YCG1 Chromosome conden 92.7 11 0.00024 41.3 18.6 220 42-277 29-263 (885)
107 COG5181 HSH155 U2 snRNP splice 92.7 14 0.0003 40.8 19.2 292 28-334 443-776 (975)
108 KOG4224|consensus 92.3 5.2 0.00011 41.3 14.8 238 72-316 177-447 (550)
109 PF08713 DNA_alkylation: DNA a 92.1 0.97 2.1E-05 43.2 9.4 134 30-171 56-191 (213)
110 PF05004 IFRD: Interferon-rela 91.5 9.3 0.0002 39.1 16.2 174 70-243 51-257 (309)
111 COG5098 Chromosome condensatio 91.2 13 0.00027 41.6 17.2 102 29-130 303-419 (1128)
112 COG5064 SRP1 Karyopherin (impo 91.2 5.6 0.00012 40.7 13.6 208 30-281 248-497 (526)
113 PF08167 RIX1: rRNA processing 91.1 5.5 0.00012 36.7 12.9 69 210-278 21-95 (165)
114 COG5064 SRP1 Karyopherin (impo 91.0 6.6 0.00014 40.2 14.0 278 27-314 73-397 (526)
115 PF10363 DUF2435: Protein of u 90.8 1.2 2.7E-05 36.9 7.4 72 222-294 11-85 (92)
116 KOG0211|consensus 90.7 7.1 0.00015 44.7 15.6 94 226-319 569-670 (759)
117 KOG1525|consensus 90.2 33 0.00071 41.6 21.0 249 52-319 249-527 (1266)
118 KOG1992|consensus 89.7 19 0.00041 41.0 17.3 185 58-245 452-670 (960)
119 COG5218 YCG1 Chromosome conden 89.6 7.6 0.00016 42.5 13.7 136 169-308 43-192 (885)
120 KOG2025|consensus 89.3 43 0.00092 37.8 19.7 58 93-150 81-142 (892)
121 KOG2038|consensus 89.2 39 0.00084 38.4 19.1 225 36-263 281-546 (988)
122 PF08713 DNA_alkylation: DNA a 89.1 0.72 1.6E-05 44.1 5.5 72 67-138 125-196 (213)
123 PF08167 RIX1: rRNA processing 88.8 10 0.00022 35.0 12.7 133 91-259 19-159 (165)
124 PF11698 V-ATPase_H_C: V-ATPas 88.5 1.1 2.4E-05 39.0 5.6 65 215-279 44-114 (119)
125 KOG2025|consensus 88.3 6.6 0.00014 43.8 12.5 87 153-242 60-154 (892)
126 KOG0915|consensus 87.9 24 0.00052 42.9 17.4 250 72-334 1008-1284(1702)
127 KOG1967|consensus 87.4 31 0.00067 39.9 17.3 237 95-336 41-306 (1030)
128 KOG2160|consensus 87.4 38 0.00083 34.9 18.2 70 100-169 127-201 (342)
129 PF14664 RICTOR_N: Rapamycin-i 87.3 22 0.00048 37.3 15.6 129 20-150 18-163 (371)
130 KOG4413|consensus 87.3 31 0.00067 35.4 15.5 245 36-287 53-340 (524)
131 smart00638 LPD_N Lipoprotein N 87.0 5.8 0.00013 44.2 11.8 73 62-135 446-518 (574)
132 cd00256 VATPase_H VATPase_H, r 87.0 28 0.00061 37.3 16.2 65 215-279 354-424 (429)
133 KOG1525|consensus 86.8 36 0.00078 41.3 18.4 249 78-335 164-436 (1266)
134 PF12074 DUF3554: Domain of un 86.6 42 0.00091 34.6 19.1 72 74-145 35-114 (339)
135 KOG2137|consensus 86.4 63 0.0014 36.4 19.2 221 93-317 236-498 (700)
136 cd06561 AlkD_like A new struct 85.6 17 0.00037 34.0 12.7 68 100-169 108-175 (197)
137 PF14664 RICTOR_N: Rapamycin-i 84.7 20 0.00043 37.7 13.6 162 119-286 5-182 (371)
138 KOG2956|consensus 84.4 5.1 0.00011 42.6 8.9 135 6-142 302-491 (516)
139 PF13513 HEAT_EZ: HEAT-like re 84.2 2.8 6.2E-05 30.6 5.2 50 228-277 1-54 (55)
140 PF01603 B56: Protein phosphat 83.9 52 0.0011 35.1 16.7 220 29-255 137-382 (409)
141 KOG0567|consensus 83.8 5.5 0.00012 39.4 8.3 56 63-122 219-276 (289)
142 PF12460 MMS19_C: RNAPII trans 83.8 64 0.0014 34.3 20.4 194 77-282 166-396 (415)
143 KOG2274|consensus 83.7 49 0.0011 38.2 16.5 200 91-295 443-660 (1005)
144 cd06561 AlkD_like A new struct 83.5 2.1 4.6E-05 40.2 5.4 70 71-140 114-184 (197)
145 cd03561 VHS VHS domain family; 81.8 16 0.00034 32.4 10.0 84 191-277 17-109 (133)
146 KOG2213|consensus 81.4 75 0.0016 33.4 17.2 79 101-183 29-107 (460)
147 KOG2062|consensus 81.3 9.8 0.00021 42.7 9.9 159 30-201 524-690 (929)
148 KOG2062|consensus 81.0 4.4 9.4E-05 45.4 7.1 112 34-148 564-679 (929)
149 PF05004 IFRD: Interferon-rela 80.4 72 0.0016 32.6 21.7 171 99-274 45-251 (309)
150 PF08506 Cse1: Cse1; InterPro 80.2 4.6 0.0001 42.4 6.9 64 58-121 301-370 (370)
151 COG5116 RPN2 26S proteasome re 80.1 4.9 0.00011 43.7 6.9 148 30-183 521-673 (926)
152 cd03568 VHS_STAM VHS domain fa 79.7 7.5 0.00016 35.1 7.2 85 191-278 17-108 (144)
153 PF08631 SPO22: Meiosis protei 79.6 70 0.0015 32.0 22.4 226 90-325 7-270 (278)
154 PF12765 Cohesin_HEAT: HEAT re 79.5 2.2 4.7E-05 29.9 2.9 39 237-275 2-42 (42)
155 KOG1967|consensus 78.0 47 0.001 38.5 14.0 199 67-274 801-1018(1030)
156 PF10165 Ric8: Guanine nucleot 77.3 1.1E+02 0.0024 33.0 19.0 187 191-377 45-299 (446)
157 cd03572 ENTH_epsin_related ENT 76.1 9.4 0.0002 33.4 6.5 46 91-136 32-77 (122)
158 PF03224 V-ATPase_H_N: V-ATPas 76.0 50 0.0011 33.6 13.0 112 98-211 106-231 (312)
159 KOG2274|consensus 75.8 1.6E+02 0.0036 34.2 25.5 219 57-281 444-690 (1005)
160 PF13001 Ecm29: Proteasome sta 75.5 25 0.00055 38.5 11.3 127 35-164 295-447 (501)
161 cd03567 VHS_GGA VHS domain fam 75.5 33 0.00071 30.8 10.0 86 191-279 18-115 (139)
162 PF11935 DUF3453: Domain of un 74.1 92 0.002 30.5 14.0 56 105-161 1-69 (239)
163 PF02985 HEAT: HEAT repeat; I 74.1 3 6.4E-05 26.8 2.2 27 64-90 2-28 (31)
164 cd03569 VHS_Hrs_Vps27p VHS dom 73.8 55 0.0012 29.4 11.1 86 191-279 21-113 (142)
165 PF01603 B56: Protein phosphat 73.8 1.3E+02 0.0028 32.1 22.1 201 94-297 130-347 (409)
166 PF13251 DUF4042: Domain of un 73.5 82 0.0018 29.6 13.4 55 191-245 115-176 (182)
167 KOG2956|consensus 73.2 1.4E+02 0.003 32.2 15.5 187 99-299 288-492 (516)
168 PF00790 VHS: VHS domain; Int 72.7 28 0.0006 31.0 9.0 80 46-125 26-117 (140)
169 KOG0168|consensus 72.7 1.9E+02 0.0042 33.6 19.6 175 65-250 170-374 (1051)
170 PF12830 Nipped-B_C: Sister ch 72.4 15 0.00033 34.5 7.6 67 212-281 6-75 (187)
171 KOG0211|consensus 71.5 1.4E+02 0.0031 34.5 16.1 253 64-323 84-353 (759)
172 PF00514 Arm: Armadillo/beta-c 71.4 9.2 0.0002 26.1 4.4 28 98-125 13-40 (41)
173 PF12074 DUF3554: Domain of un 71.1 1.3E+02 0.0028 30.9 22.4 216 77-298 2-256 (339)
174 cd03572 ENTH_epsin_related ENT 71.0 13 0.00027 32.6 6.1 47 237-283 24-70 (122)
175 KOG2137|consensus 70.2 1E+02 0.0023 34.8 14.2 175 152-334 272-475 (700)
176 KOG1822|consensus 70.1 2.8E+02 0.006 35.3 18.4 95 58-152 872-976 (2067)
177 PF12530 DUF3730: Protein of u 70.1 1.1E+02 0.0024 29.8 16.3 89 228-317 98-187 (234)
178 KOG1993|consensus 68.0 1.7E+02 0.0037 33.7 15.2 129 146-277 626-762 (978)
179 PF10521 DUF2454: Protein of u 67.8 91 0.002 31.3 12.5 68 211-278 116-201 (282)
180 PF14500 MMS19_N: Dos2-interac 67.7 1.4E+02 0.003 29.8 20.2 226 34-261 8-256 (262)
181 PF12765 Cohesin_HEAT: HEAT re 67.4 7.9 0.00017 27.0 3.3 24 96-119 17-40 (42)
182 KOG1991|consensus 67.2 2.6E+02 0.0057 32.9 23.0 78 73-150 429-519 (1010)
183 cd00197 VHS_ENTH_ANTH VHS, ENT 66.6 28 0.0006 29.7 7.4 67 213-279 36-114 (115)
184 PF01347 Vitellogenin_N: Lipop 66.2 5.2 0.00011 44.9 3.5 75 59-134 487-561 (618)
185 PF11701 UNC45-central: Myosin 66.1 73 0.0016 29.0 10.4 128 108-240 16-156 (157)
186 KOG1243|consensus 66.0 73 0.0016 35.9 11.9 87 211-297 327-415 (690)
187 cd03567 VHS_GGA VHS domain fam 65.5 74 0.0016 28.5 10.0 78 94-171 35-126 (139)
188 KOG0567|consensus 65.3 20 0.00043 35.6 6.7 57 64-124 189-247 (289)
189 cd03569 VHS_Hrs_Vps27p VHS dom 64.7 32 0.00069 30.9 7.6 67 60-126 39-114 (142)
190 PF10274 ParcG: Parkin co-regu 63.6 21 0.00046 33.5 6.3 50 94-143 77-126 (183)
191 cd03561 VHS VHS domain family; 63.5 74 0.0016 28.0 9.7 69 94-162 34-110 (133)
192 cd07064 AlkD_like_1 A new stru 63.4 1.4E+02 0.0031 28.5 12.9 67 100-169 118-184 (208)
193 KOG1949|consensus 62.7 2.8E+02 0.006 31.7 18.8 72 60-131 172-254 (1005)
194 KOG1293|consensus 62.6 65 0.0014 35.9 10.6 125 36-165 388-534 (678)
195 PLN03076 ARF guanine nucleotid 62.4 4.4E+02 0.0095 33.8 20.6 208 81-292 1119-1395(1780)
196 KOG0946|consensus 62.2 2.6E+02 0.0057 32.2 15.2 71 218-288 126-204 (970)
197 PF11698 V-ATPase_H_C: V-ATPas 61.9 13 0.00027 32.4 4.2 28 99-126 88-115 (119)
198 KOG0946|consensus 61.2 3.1E+02 0.0067 31.7 21.9 113 32-146 30-178 (970)
199 cd03568 VHS_STAM VHS domain fa 61.0 79 0.0017 28.4 9.5 71 93-163 33-109 (144)
200 KOG2933|consensus 60.1 14 0.0003 37.5 4.7 98 28-126 132-234 (334)
201 KOG1820|consensus 60.1 2.8E+02 0.0061 32.4 15.7 187 59-254 250-455 (815)
202 COG5116 RPN2 26S proteasome re 59.9 39 0.00086 37.1 8.2 103 37-150 494-602 (926)
203 PF00790 VHS: VHS domain; Int 58.7 48 0.001 29.5 7.6 72 92-163 37-117 (140)
204 PF11707 Npa1: Ribosome 60S bi 58.0 2.3E+02 0.005 29.2 13.8 82 41-129 42-146 (330)
205 PF12397 U3snoRNP10: U3 small 57.9 72 0.0016 27.4 8.5 99 212-317 4-107 (121)
206 PF10521 DUF2454: Protein of u 54.7 1.8E+02 0.0038 29.2 11.9 40 93-132 115-154 (282)
207 smart00288 VHS Domain present 54.6 1.3E+02 0.0028 26.5 9.6 72 92-163 32-110 (133)
208 KOG2149|consensus 54.2 1.2E+02 0.0027 31.9 10.6 51 100-150 61-115 (393)
209 KOG2149|consensus 54.1 1.6E+02 0.0034 31.1 11.4 101 219-320 63-175 (393)
210 KOG2021|consensus 50.8 4.5E+02 0.0097 30.4 15.7 73 71-144 502-586 (980)
211 PF03224 V-ATPase_H_N: V-ATPas 49.8 2.9E+02 0.0064 28.0 14.5 157 75-242 53-226 (312)
212 PF00514 Arm: Armadillo/beta-c 49.4 33 0.00071 23.3 3.9 24 290-313 16-39 (41)
213 PF10274 ParcG: Parkin co-regu 49.2 2.3E+02 0.005 26.6 10.9 84 97-182 38-127 (183)
214 smart00288 VHS Domain present 49.0 65 0.0014 28.4 6.8 54 191-247 17-70 (133)
215 KOG4653|consensus 48.8 4.3E+02 0.0094 30.9 14.3 63 70-132 735-803 (982)
216 KOG1517|consensus 48.7 3E+02 0.0065 32.9 13.2 132 13-150 495-658 (1387)
217 PF12530 DUF3730: Protein of u 48.0 2.7E+02 0.0059 27.0 17.5 166 58-228 34-217 (234)
218 PF11701 UNC45-central: Myosin 47.5 53 0.0012 29.9 6.2 109 74-182 17-138 (157)
219 KOG2213|consensus 47.0 3.8E+02 0.0082 28.4 18.2 77 30-107 30-106 (460)
220 PF06371 Drf_GBD: Diaphanous G 46.9 30 0.00065 32.0 4.6 27 253-279 160-186 (187)
221 KOG1820|consensus 46.9 4.5E+02 0.0098 30.8 14.6 60 91-150 247-311 (815)
222 KOG4413|consensus 46.7 3.5E+02 0.0076 28.0 17.4 216 91-315 76-333 (524)
223 KOG4535|consensus 46.5 2.4E+02 0.0052 30.7 11.3 112 37-150 24-166 (728)
224 KOG1243|consensus 46.3 19 0.00041 40.3 3.4 87 64-150 332-424 (690)
225 smart00185 ARM Armadillo/beta- 46.3 37 0.00081 22.4 3.8 28 98-125 13-40 (41)
226 COG5231 VMA13 Vacuolar H+-ATPa 46.1 30 0.00065 35.3 4.5 67 214-280 356-428 (432)
227 cd03565 VHS_Tom1 VHS domain fa 45.3 84 0.0018 28.1 7.0 86 191-279 18-114 (141)
228 cd07064 AlkD_like_1 A new stru 45.1 48 0.001 31.8 5.7 67 72-139 125-192 (208)
229 PF03130 HEAT_PBS: PBS lyase H 44.9 42 0.00092 20.7 3.5 25 78-102 1-25 (27)
230 PF07539 DRIM: Down-regulated 44.4 86 0.0019 28.1 6.9 49 95-146 15-63 (141)
231 PF14676 FANCI_S2: FANCI solen 44.0 1.2E+02 0.0025 27.9 7.8 118 117-238 38-156 (158)
232 KOG0413|consensus 43.8 6.4E+02 0.014 30.1 16.5 67 215-281 617-686 (1529)
233 KOG2933|consensus 42.5 1.2E+02 0.0027 30.8 8.2 89 43-134 71-166 (334)
234 PF07539 DRIM: Down-regulated 42.0 1.1E+02 0.0024 27.4 7.2 44 216-262 19-62 (141)
235 PF14631 FancD2: Fanconi anaem 41.5 7.9E+02 0.017 30.9 16.4 270 49-334 232-521 (1426)
236 KOG2759|consensus 41.5 51 0.0011 34.9 5.5 65 215-279 367-437 (442)
237 KOG3723|consensus 41.0 5.5E+02 0.012 28.6 16.3 58 218-276 203-262 (851)
238 PF14764 SPG48: AP-5 complex s 40.8 5E+02 0.011 28.1 13.7 135 154-293 9-154 (459)
239 KOG0889|consensus 40.2 1.2E+03 0.025 32.2 21.8 242 93-334 1122-1416(3550)
240 KOG0891|consensus 39.4 7E+02 0.015 33.0 15.7 93 219-315 486-594 (2341)
241 PF04118 Dopey_N: Dopey, N-ter 39.3 4.4E+02 0.0095 27.0 17.6 169 98-278 55-252 (307)
242 KOG0413|consensus 39.2 1.3E+02 0.0027 35.5 8.4 91 241-331 996-1091(1529)
243 PF08389 Xpo1: Exportin 1-like 38.6 1.3E+02 0.0028 26.1 7.3 35 111-145 2-37 (148)
244 PF09324 DUF1981: Domain of un 37.5 1.4E+02 0.003 24.2 6.5 65 212-276 15-84 (86)
245 PF14961 BROMI: Broad-minded p 37.2 3.7E+02 0.0081 32.6 12.0 66 65-130 164-235 (1296)
246 PF11707 Npa1: Ribosome 60S bi 36.6 3.4E+02 0.0073 27.9 10.8 62 225-295 37-99 (330)
247 KOG1087|consensus 36.5 99 0.0021 33.6 7.0 64 214-277 38-109 (470)
248 cd00256 VATPase_H VATPase_H, r 36.3 5.8E+02 0.012 27.5 20.2 191 76-281 52-259 (429)
249 PF01345 DUF11: Domain of unkn 36.0 1.5E+02 0.0033 22.9 6.5 50 427-476 22-72 (76)
250 KOG1222|consensus 35.8 6.2E+02 0.013 27.7 20.8 49 154-207 483-534 (791)
251 PF02854 MIF4G: MIF4G domain; 35.4 1.4E+02 0.003 27.5 7.3 48 279-326 11-58 (209)
252 PF11622 DUF3251: Protein of u 33.9 1.9E+02 0.0041 26.7 7.3 60 431-498 64-123 (165)
253 COG4912 Predicted DNA alkylati 33.8 1.8E+02 0.0039 28.1 7.5 48 83-130 140-187 (222)
254 KOG2199|consensus 33.4 4.6E+02 0.0099 27.8 10.7 86 45-130 28-125 (462)
255 TIGR01451 B_ant_repeat conserv 33.1 1.1E+02 0.0024 22.3 4.7 34 444-477 11-44 (53)
256 PLN03076 ARF guanine nucleotid 33.0 4.5E+02 0.0097 33.7 12.6 126 191-316 1150-1300(1780)
257 PF08767 CRM1_C: CRM1 C termin 32.7 5.6E+02 0.012 26.2 20.0 236 118-358 6-308 (319)
258 PF08623 TIP120: TATA-binding 32.6 75 0.0016 29.5 4.6 58 194-252 46-103 (169)
259 PF08623 TIP120: TATA-binding 32.6 77 0.0017 29.4 4.7 52 227-279 40-93 (169)
260 PF13001 Ecm29: Proteasome sta 32.0 7.1E+02 0.015 27.2 16.1 191 78-279 220-442 (501)
261 smart00567 EZ_HEAT E-Z type HE 30.3 76 0.0017 19.8 3.1 22 77-98 2-23 (30)
262 PF12397 U3snoRNP10: U3 small 30.2 1.9E+02 0.0041 24.7 6.7 65 62-128 6-76 (121)
263 KOG1517|consensus 29.1 2.1E+02 0.0046 34.1 8.2 99 30-128 604-734 (1387)
264 PF08045 CDC14: Cell division 28.8 2.2E+02 0.0049 28.3 7.5 67 213-279 132-206 (257)
265 PF08569 Mo25: Mo25-like; Int 28.3 4.3E+02 0.0093 27.4 9.9 102 212-313 207-333 (335)
266 PF02854 MIF4G: MIF4G domain; 27.5 4.7E+02 0.01 23.8 11.0 79 64-143 4-83 (209)
267 cd08050 TAF6 TATA Binding Prot 27.2 7.1E+02 0.015 25.7 12.8 130 19-149 172-324 (343)
268 PF08631 SPO22: Meiosis protei 27.1 6.3E+02 0.014 25.1 13.2 97 228-326 80-181 (278)
269 KOG1991|consensus 26.4 1.2E+03 0.025 27.9 29.6 86 44-130 442-536 (1010)
270 PF00553 CBM_2: Cellulose bind 25.9 2.8E+02 0.0061 23.0 6.7 43 433-477 3-45 (101)
271 KOG2973|consensus 25.7 4.1E+02 0.0088 27.3 8.7 84 65-150 6-98 (353)
272 KOG1943|consensus 25.7 1.2E+03 0.027 28.0 19.9 237 92-334 538-811 (1133)
273 PF06685 DUF1186: Protein of u 25.5 6.7E+02 0.014 24.8 10.7 43 100-142 114-158 (249)
274 KOG0392|consensus 24.3 1.4E+03 0.031 28.2 16.1 66 215-280 817-883 (1549)
275 PRK08951 malate synthase; Prov 24.1 1.7E+02 0.0037 27.6 5.3 49 419-477 95-143 (190)
276 KOG3723|consensus 23.9 6.2E+02 0.013 28.2 10.1 81 83-165 183-267 (851)
277 PF05536 Neurochondrin: Neuroc 23.6 7.6E+02 0.017 27.4 11.4 98 217-314 8-127 (543)
278 PF09450 DUF2019: Domain of un 23.6 36 0.00078 29.0 0.8 37 101-140 51-87 (106)
279 COG5656 SXM1 Importin, protein 22.8 1.2E+03 0.027 27.0 23.6 256 75-334 429-733 (970)
280 KOG2038|consensus 22.7 1.2E+03 0.027 27.0 19.2 55 96-150 303-357 (988)
281 PF08568 Kinetochor_Ybp2: Unch 22.3 4.2E+02 0.0092 29.9 9.3 23 312-334 153-176 (633)
282 PF05536 Neurochondrin: Neuroc 22.0 1.1E+03 0.024 26.1 26.3 105 27-132 7-133 (543)
283 KOG0593|consensus 21.9 87 0.0019 32.1 3.2 73 219-306 32-106 (396)
284 PF12612 TFCD_C: Tubulin foldi 21.8 6.6E+02 0.014 23.4 9.7 36 91-126 1-36 (193)
285 PHA03159 hypothetical protein; 21.7 91 0.002 27.3 2.8 51 86-138 1-51 (160)
286 PF06159 DUF974: Protein of un 21.6 4.3E+02 0.0092 26.1 8.1 72 446-520 15-94 (249)
287 PF11355 DUF3157: Protein of u 21.6 2.2E+02 0.0049 27.0 5.6 59 427-500 96-154 (199)
288 PF12726 SEN1_N: SEN1 N termin 21.5 5.8E+02 0.012 29.4 10.3 97 236-334 503-605 (727)
289 KOG2032|consensus 21.4 1.1E+03 0.024 25.8 22.0 104 62-165 255-375 (533)
290 COG5117 NOC3 Protein involved 21.3 1.1E+03 0.023 25.7 12.4 67 78-144 423-505 (657)
291 KOG2153|consensus 21.2 1.2E+03 0.027 26.4 13.7 47 81-127 194-240 (704)
292 PF00927 Transglut_C: Transglu 20.6 2.2E+02 0.0047 23.7 5.1 36 433-468 3-38 (107)
293 PF12333 Ipi1_N: Rix1 complex 20.5 3.4E+02 0.0074 22.7 6.2 38 94-131 8-45 (102)
294 KOG1822|consensus 20.4 1.9E+03 0.042 28.4 16.0 124 211-334 873-1007(2067)
No 1
>KOG1062|consensus
Probab=100.00 E-value=1.3e-100 Score=808.81 Aligned_cols=512 Identities=55% Similarity=0.824 Sum_probs=464.7
Q ss_pred hhhcCCCCCCCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChhh
Q psy4020 15 DTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEM 94 (530)
Q Consensus 15 ~i~mlG~d~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el 94 (530)
||||||||.|||++||+||++|++|.+||+|||++++++++++|+.+|+||+++|||+|+|.+++|+||+++|+|+++||
T Consensus 60 Yi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~Em 139 (866)
T KOG1062|consen 60 YIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEM 139 (866)
T ss_pred HHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcc------------------------
Q psy4020 95 SRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAI------------------------ 150 (530)
Q Consensus 95 ~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V------------------------ 150 (530)
++++.|.|.+++.+++|||||||++|++|++++.|++++.|++...++|+|++|||
T Consensus 140 ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~ 219 (866)
T KOG1062|consen 140 ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD 219 (866)
T ss_pred hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998
Q ss_pred ------------------------------hHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHH
Q psy4020 151 ------------------------------HQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVL 200 (530)
Q Consensus 151 ------------------------------~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~ 200 (530)
+|++|||+|+.|++.|++.++.|.|+|.++.+++++++|+++||+|||++
T Consensus 220 l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~ 299 (866)
T KOG1062|consen 220 LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVR 299 (866)
T ss_pred HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccC
Q psy4020 201 SIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVN 280 (530)
Q Consensus 201 ~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n 280 (530)
+|+.+.++++++++++++|++||.++|.|+||+||..|.+.++.+|.++++|+.+|+.||+|+|.+||++|||++|+|+|
T Consensus 300 TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 300 TIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN 379 (866)
T ss_pred HHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH-----------hhhhhhcchh-----
Q psy4020 281 SANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA-----------NLLGFSNRAL----- 344 (530)
Q Consensus 281 ~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~-----------~~~~~v~~a~----- 344 (530)
++|+..+++||++|+..+|.+||.+++.+|..+|+||+|+..|++|++++.+.. +++++|.+|.
T Consensus 380 ~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~ 459 (866)
T KOG1062|consen 380 ESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHE 459 (866)
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhh
Confidence 999999999999999999999999999999999999999999999999999987 5555555530
Q ss_pred --------------------------------------------------------------------------------
Q psy4020 345 -------------------------------------------------------------------------------- 344 (530)
Q Consensus 345 -------------------------------------------------------------------------------- 344 (530)
T Consensus 460 y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al 539 (866)
T KOG1062|consen 460 YAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTAL 539 (866)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------hhHHHHHHHHHHhhcCcchHHHHHhhccCCCCCCCc-----------------
Q psy4020 345 ---------------------------RDQRRALELSFALVNSANVRSMMKELLIFLEKSEPD----------------- 380 (530)
Q Consensus 345 ---------------------------eiq~~a~e~~~ll~~~p~~r~~ile~l~~l~~~~~~----------------- 380 (530)
|+||||+||..++.++.++|+.++|+||.+|+...+
T Consensus 540 ~KLSsr~~s~~~ri~~lI~~~~~s~~~elQQRa~E~~~l~~~~~~lr~siLe~mp~~e~~~~~~~~~g~~~~~i~~~~~p 619 (866)
T KOG1062|consen 540 LKLSSRFHSSSERIKQLISSYKSSLDTELQQRAVEYNALFAKDKHLRKSILERMPSCEDITVDARLDGNGPAAIEQGAEP 619 (866)
T ss_pred HHHHhhccccHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccccccchHHHHHhccCC
Confidence 899999999999999999999999999988773320
Q ss_pred ----------------------------------cccCCCCCcccccccCCCCcCCcchhhhhhhhc-------------
Q psy4020 381 ----------------------------------FKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA------------- 413 (530)
Q Consensus 381 ----------------------------------l~~~~~~~~~~~~~~~~p~~~~~~~~l~dll~~------------- 413 (530)
++|...+. +.+....+|......+.+.|+++.
T Consensus 620 ~~~~~~~~~~~~l~d~~~~~~~~~~~s~~~~l~~~L~~~~~~-p~~~~~~~p~p~~~~~~~~~I~~~~~s~~~~~~~~~~ 698 (866)
T KOG1062|consen 620 YKSAGESLGVAELSDLLPLDSKETPTSSLNDLEDLLDKDESS-PGASNGAAPVPSEGGNVLQDILGDVLSQSKNSKEKLD 698 (866)
T ss_pred CcccccccccchhhhccCCCCCcCCcccccchhccCCCccCC-CCCCCCCCCCCCCccchhhhhhhccccccccchhccc
Confidence 11111000 011111111111123344444431
Q ss_pred ----------------------------------cCC-C-------CCCceeEEEeCCCcEEEEEeecCCCCCCeEEEEE
Q psy4020 414 ----------------------------------VSE-N-------KDKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTM 451 (530)
Q Consensus 414 ----------------------------------~~~-~-------~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~ 451 (530)
+++ | +..|++++|+++|+++++.+.+.+.++..+++++
T Consensus 699 L~~~~~~~~~~s~a~~~~s~~sp~~s~~~s~l~~l~p~p~~~~~~~~~~~~~~~~dkssl~~~~~~~k~~~n~~~t~i~~ 778 (866)
T KOG1062|consen 699 LAGSLFVGSSSSAAPPAPSGTSPSSSQPFSLLSGLSPDPSKNTLAATDYPSIKAYDKSSLLVELSFTKGPSNKKTTVITL 778 (866)
T ss_pred cccccccccCCCCCCCCcCCCCCcCCCcchhhcccCCCccccccccccCCcceeeecccceeeeeeccCCCCCceeEEEe
Confidence 111 0 0167899999999999999999998888999999
Q ss_pred EEeeCCccc-ccceEEEEeecCceEEEeeCCCCCCCCC--CCCceEEEEEEecCCCCCcceeEEEEEEEEECCeeeeeee
Q psy4020 452 QATNENLTL-VSDFLFQAAVPKTFQLQMLPPSDTNIPP--GSQVTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQDQA 528 (530)
Q Consensus 452 ~~~n~~~~~-i~~~~fq~AVpK~~~l~l~p~Sg~~l~~--~~~itQ~~~i~~~~~~~~~~~~lr~k~~y~~~~~~~~e~~ 528 (530)
+|+|.++.+ +++|+||+||||+++++++|+||+.+|+ ++++||.|+| .|+++++++||.|++|.++|..+.|.+
T Consensus 779 ~~tn~s~~~~l~~F~~~aAv~ks~ql~l~~~ss~~~~~~~~g~~tq~~rv---~n~~~~~l~~r~rl~~~~~G~s~~e~~ 855 (866)
T KOG1062|consen 779 TFTNLSPNTDLTDFHFQAAVPKSLQLQLQPASSNSLPASGGGHITQVLRV---LNPQKSTLKLRLRLSYSLNGSSVLENF 855 (866)
T ss_pred eccCCCCCcchhhhcccccchHHHhhccCCccccccCcCCCCcceeEEEE---ecCCCceEEEEEEEEeecCCchHHhhh
Confidence 999999988 9999999999999999999999999999 6779999999 999999999999999999999998888
Q ss_pred eC
Q psy4020 529 EI 530 (530)
Q Consensus 529 ~v 530 (530)
+|
T Consensus 856 ev 857 (866)
T KOG1062|consen 856 EV 857 (866)
T ss_pred hh
Confidence 75
No 2
>KOG1077|consensus
Probab=100.00 E-value=6.1e-64 Score=521.59 Aligned_cols=502 Identities=27% Similarity=0.454 Sum_probs=410.8
Q ss_pred hhhcCCCCCCCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChhh
Q psy4020 15 DTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEM 94 (530)
Q Consensus 15 ~i~mlG~d~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el 94 (530)
||+|+|||++||++|.++|++|++|++|.+|||+++.+.++++|++-+++|+++|||.+.||...+|||.++++|+..+|
T Consensus 64 yI~llg~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~ 143 (938)
T KOG1077|consen 64 YIYLLGYDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREM 143 (938)
T ss_pred HHHHhcCccccchHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChhhHH--hhHHHHHHhcCCCCCcc--------------------
Q psy4020 95 SRDLASEVERLMKSS--NAYIRKKAALCAYRIILKVPELME--IFLPATRLLLSDKNHAI-------------------- 150 (530)
Q Consensus 95 ~~~l~~~V~~~l~~~--~~yVRK~A~la~~ki~~~~p~~i~--~~i~~l~~lL~d~n~~V-------------------- 150 (530)
++.+.++|-++|.++ .+||||+|++|++|+|++.||++. +|..++..+|+|++-+|
T Consensus 144 ~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk 223 (938)
T KOG1077|consen 144 AEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK 223 (938)
T ss_pred HHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh
Confidence 999999999999986 699999999999999999999986 79999999999998776
Q ss_pred ---------------------------------hHHHHHHHHHhhc-CCChhhHHHHHHHHHHHhhccc--------CCC
Q psy4020 151 ---------------------------------HQVKILKLLRILG-KNDVEASEAMNDILAQVATNTE--------TSK 188 (530)
Q Consensus 151 ---------------------------------~qi~iL~lL~~l~-~~~~~~~~~l~~iL~~~l~~~~--------~~~ 188 (530)
+|++++++|..|- +.||.....++++++.++.... +.+
T Consensus 224 ~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~ 303 (938)
T KOG1077|consen 224 TCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHS 303 (938)
T ss_pred hhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhh
Confidence 8999999999995 4577777888999988886544 234
Q ss_pred CCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccCh--HHHHHHHHHHhhhcc-CCcH
Q psy4020 189 NVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDT--SAVQRHRNTILECLK-DPDV 265 (530)
Q Consensus 189 n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p--~~~~~~~~~i~~~l~-d~d~ 265 (530)
|+.+||+|||++.++++.++++++..|++.|+.||+++++|+||++|+++.+++...+ +.++.|...|+..|+ +.|.
T Consensus 304 na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDv 383 (938)
T KOG1077|consen 304 NAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDV 383 (938)
T ss_pred hhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccch
Confidence 6789999999999999999999999999999999999999999999999999997754 689999999999999 9999
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH-----------
Q psy4020 266 SIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA----------- 334 (530)
Q Consensus 266 ~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~----------- 334 (530)
+||++++|+||.||+.+|++.||.||++|+..+|...|++++-+++.+||||++|.+||||++++++..
T Consensus 384 SirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~ 463 (938)
T KOG1077|consen 384 SIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWY 463 (938)
T ss_pred HHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhhcch-----------------------------------------------------------------------
Q psy4020 335 NLLGFSNRA----------------------------------------------------------------------- 343 (530)
Q Consensus 335 ~~~~~v~~a----------------------------------------------------------------------- 343 (530)
+++|+|.+-
T Consensus 464 RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLt 543 (938)
T KOG1077|consen 464 RVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLT 543 (938)
T ss_pred HhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHH
Confidence 666666650
Q ss_pred ----------------------------hhhHHHHHHHHHHhhcC-cchHHHHHhhccCCCCCCCccc------------
Q psy4020 344 ----------------------------LRDQRRALELSFALVNS-ANVRSMMKELLIFLEKSEPDFK------------ 382 (530)
Q Consensus 344 ----------------------------~eiq~~a~e~~~ll~~~-p~~r~~ile~l~~l~~~~~~l~------------ 382 (530)
.|+||||+||.++...- .++-..++|.||+..+.+..|+
T Consensus 544 TyiKl~nl~PEi~~~v~~vFq~~~n~~D~ElQqRa~EYLql~k~as~dvL~~vleeMPpF~er~ssll~kl~~~~~~~~~ 623 (938)
T KOG1077|consen 544 TYIKLINLFPEIKSNVQKVFQLYSNLIDVELQQRAVEYLQLSKLASTDVLQTVLEEMPPFPERESSLLKKLKKKKPSAIS 623 (938)
T ss_pred HHHHHHhhChhhhHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccchHHHHHHhhCCCCccccchHHHHhhccCCchhc
Confidence 09999999999987543 4788899999995555443211
Q ss_pred --cCC-C---CCcccccccCCC---------------------C----cCCcchhhhhhhhccCCCCC---Cc-------
Q psy4020 383 --AHC-S---SNIVLCAERFAP---------------------N----KRWHLDTLLKVLVAVSENKD---KV------- 421 (530)
Q Consensus 383 --~~~-~---~~~~~~~~~~~p---------------------~----~~~~~~~l~dll~~~~~~~~---~~------- 421 (530)
.+. + +++.+.+..+.| + +.....+..|+|++..++.+ .|
T Consensus 624 l~~~~~~~~~~~~~~~~~~~tp~~v~~~s~st~~~~v~~~p~~n~t~~~~~~~~~~~di~s~~~~~~s~~~~p~~~~~~f 703 (938)
T KOG1077|consen 624 LRAGAGPKTLANPPPVASEPTPSKVSKRSNSTDPLSVPSPPPPNNTISSVNSQIPSVDIFSGLDGYYSRQILPGNAFYGF 703 (938)
T ss_pred cccccCCcccCCCCcccCCCCcccccCCCCCCCcccCCCCCCCCCCccCCCCCCCchhhhcCccccccccCCChhhhhhh
Confidence 000 0 001111111111 1 11112244466666543211 12
Q ss_pred -------eeEEEeCCCcEEEEEeecCCCCCCeEEEEEEEeeCCcccccceEEEEeecCceEEEeeC---CCCCCCCCCCC
Q psy4020 422 -------SVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLP---PSDTNIPPGSQ 491 (530)
Q Consensus 422 -------~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l~l~p---~Sg~~l~~~~~ 491 (530)
.=..|+++-++|-.-..- . .+.=++..+|.|.++.|+++|+=++-=|-..++.|.- |+..++||+..
T Consensus 704 ~r~~~k~~GVLfed~~iQIgvk~e~--r-~~~grl~LfygNkts~~lt~~s~~ii~~~~~~~~L~~~~kpv~~ti~~g~q 780 (938)
T KOG1077|consen 704 TRFCSKDNGVLFEDSLIQIGVKSET--R-NNLGRLYLFYGNKTSVPLTSLSPTIIPPGNLELHLAVQNKPVTATIPPGAQ 780 (938)
T ss_pred hhheeccCcEEeeccceeEEEeeec--c-CcCCeEEEEecccccccccccceeeecCCchhhhhhhcCcccCCCCCccce
Confidence 123456665555443322 1 2223888999999999999999999888777776663 46678999889
Q ss_pred ceEEEEEEecCCCCCcceeEEEEEEEEECCe
Q psy4020 492 VTQTLRVAKANNNVQASLRMRIKVSYNVNGT 522 (530)
Q Consensus 492 itQ~~~i~~~~~~~~~~~~lr~k~~y~~~~~ 522 (530)
+.|...+.+...-...|+ .-++|+.||.
T Consensus 781 vQQ~~~v~~i~d~~d~pi---l~isfk~g~t 808 (938)
T KOG1077|consen 781 VQQSLEVSCIRDFEDPPI---LAISFKFGGT 808 (938)
T ss_pred ecceeeeeeecccccCCe---EEEEEEeCCc
Confidence 999999944442224444 5677888875
No 3
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=1.4e-58 Score=511.04 Aligned_cols=342 Identities=17% Similarity=0.172 Sum_probs=298.7
Q ss_pred HHHHHHhhh--hcCCCCCCCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHH
Q psy4020 8 INDAVERDT--YLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCT 85 (530)
Q Consensus 8 i~~~~~~~i--~mlG~d~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~ 85 (530)
.++|+||.| .++|+|++++|++|+++++|+|+++|||||||++.|++.+||+++|++|+|+||++|+||++||+|||+
T Consensus 49 kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRt 128 (746)
T PTZ00429 49 KKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRT 128 (746)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 456677755 457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH--hhHHHHHHhcCCCCCcc-------------
Q psy4020 86 LGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME--IFLPATRLLLSDKNHAI------------- 150 (530)
Q Consensus 86 l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~--~~i~~l~~lL~d~n~~V------------- 150 (530)
||+|+.+++++.+.++|++++.|++|||||+|++|++|+|+.+|++++ .|++.+.++|.|+|++|
T Consensus 129 Ls~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 129 MMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred HHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999975 79999999999999887
Q ss_pred --------------------------hHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhc
Q psy4020 151 --------------------------HQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMD 204 (530)
Q Consensus 151 --------------------------~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~ 204 (530)
+|+.+|++|..+.+.+.+... +++..+.+...+ .|+||+++|++++++
T Consensus 209 ~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~---~il~~l~~~Lq~---~N~AVVl~Aik~il~ 282 (746)
T PTZ00429 209 YGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAE---TLLTRVLPRMSH---QNPAVVMGAIKVVAN 282 (746)
T ss_pred hCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHH---HHHHHHHHHhcC---CCHHHHHHHHHHHHH
Confidence 799999999888877655444 444444443222 378999999999998
Q ss_pred cCC--ChHHHHHHHHHHHH---hccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhcc
Q psy4020 205 IKS--ESGLRVLAVNILGR---FLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALV 279 (530)
Q Consensus 205 l~~--~~~l~~~~v~~L~~---lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~ 279 (530)
+.. ++++...+..++.. +|.++++|+||++|+++..+++.+|.+|++|. ++|+|+.+++.+||++||++|+.||
T Consensus 283 l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~-~~Ff~~~~Dp~yIK~~KLeIL~~La 361 (746)
T PTZ00429 283 LASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNL-DSFYVRYSDPPFVKLEKLRLLLKLV 361 (746)
T ss_pred hcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHH-HhhhcccCCcHHHHHHHHHHHHHHc
Confidence 875 35566665544432 34678999999999999999999999999984 5666777777899999999999999
Q ss_pred ChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHHhhhhhhcchhhhHHHHHHHHHHhhc
Q psy4020 280 NSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALRDQRRALELSFALVN 359 (530)
Q Consensus 280 n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~~~~~~v~~a~eiq~~a~e~~~ll~~ 359 (530)
|++|+..|++||.+|+.+.|.+|++++|++||.||.||+..++|||++|++++..+.. ++. +..+.+++++++
T Consensus 362 ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~-~v~------e~i~vik~Ilrk 434 (746)
T PTZ00429 362 TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPE-LLP------QVVTAAKDIVRK 434 (746)
T ss_pred CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCch-hHH------HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987432 222 335678999999
Q ss_pred Ccch
Q psy4020 360 SANV 363 (530)
Q Consensus 360 ~p~~ 363 (530)
||+.
T Consensus 435 yP~~ 438 (746)
T PTZ00429 435 YPEL 438 (746)
T ss_pred CccH
Confidence 9985
No 4
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=3.7e-53 Score=462.51 Aligned_cols=359 Identities=34% Similarity=0.511 Sum_probs=312.0
Q ss_pred HHHHHHh--hhhcCCCCCCCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHH
Q psy4020 8 INDAVER--DTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCT 85 (530)
Q Consensus 8 i~~~~~~--~i~mlG~d~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~ 85 (530)
.+++++| |++++|+|++||+++++++++|+|++.||+||+|++.+++.++|+++|++|+++|||+|+||++||+|||+
T Consensus 23 ~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~ 102 (526)
T PF01602_consen 23 KKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRT 102 (526)
T ss_dssp HHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhh
Confidence 3445555 66889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHh-hHHHHHHhcCCCCCcc--------------
Q psy4020 86 LGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEI-FLPATRLLLSDKNHAI-------------- 150 (530)
Q Consensus 86 l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~-~i~~l~~lL~d~n~~V-------------- 150 (530)
+|+++++++++.+.+.|.+++.|++|||||+|++|++++|+.+|+.++. |++.+.++|.|.|++|
T Consensus 103 l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~ 182 (526)
T PF01602_consen 103 LSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEIKCN 182 (526)
T ss_dssp HHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHHHCT
T ss_pred hhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999999988 7999999999999876
Q ss_pred -------------------------hHHHHHHHHHhhcCCChhhH--HHHHHHHHHHhhcccCCCCCcchhHHHHHHHHh
Q psy4020 151 -------------------------HQVKILKLLRILGKNDVEAS--EAMNDILAQVATNTETSKNVGNTILYETVLSIM 203 (530)
Q Consensus 151 -------------------------~qi~iL~lL~~l~~~~~~~~--~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~ 203 (530)
+|++++++|..+++.++... ..+.+.+...+++ .+.+|+|||++++.
T Consensus 183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s------~~~~V~~e~~~~i~ 256 (526)
T PF01602_consen 183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQS------SSPSVVYEAIRLII 256 (526)
T ss_dssp HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhc------cccHHHHHHHHHHH
Confidence 68899999999998888777 5677777776663 37899999999999
Q ss_pred ccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhh
Q psy4020 204 DIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSAN 283 (530)
Q Consensus 204 ~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~N 283 (530)
.+...+.+...+++.|++||.++++|+||++|++|..++..+|..+......++.+..++|.+||++|+++++.++|++|
T Consensus 257 ~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n 336 (526)
T PF01602_consen 257 KLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESN 336 (526)
T ss_dssp HHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH
T ss_pred HhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccc
Confidence 99988888899999999999999999999999999999999966665333334444559999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc-CchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHHhhhhhhcchhhhHHHHHHHHHHhhcCcc
Q psy4020 284 VRSMMKELLIFLEKS-EPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALRDQRRALELSFALVNSAN 362 (530)
Q Consensus 284 v~~Iv~eL~~yl~~~-d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~~~~~~v~~a~eiq~~a~e~~~ll~~~p~ 362 (530)
+..|++||.+|+.+. |.+++++++++|+.+|++|+++.+||++++++++..+-.++..++ ...+.+++.++|+
T Consensus 337 ~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~------~~~i~~ll~~~~~ 410 (526)
T PF01602_consen 337 VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEI------INVIRDLLSNNPE 410 (526)
T ss_dssp HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHH------HHHHHHHHHHSTT
T ss_pred hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchH------HHHHHHHhhcChh
Confidence 999999999999655 888999999999999999999999999999999997433333322 3457888999999
Q ss_pred hHHHHHhhcc-CCCCCC
Q psy4020 363 VRSMMKELLI-FLEKSE 378 (530)
Q Consensus 363 ~r~~ile~l~-~l~~~~ 378 (530)
.++.+++.+. .+++..
T Consensus 411 ~~~~~l~~L~~~l~~~~ 427 (526)
T PF01602_consen 411 LREKILKKLIELLEDIS 427 (526)
T ss_dssp THHHHHHHHHHHHTSSS
T ss_pred hhHHHHHHHHHHHHHhh
Confidence 9998988887 455533
No 5
>KOG1059|consensus
Probab=100.00 E-value=6e-53 Score=441.28 Aligned_cols=361 Identities=29% Similarity=0.477 Sum_probs=328.4
Q ss_pred CchhHHHHHHHHH----------hhhhcCCCCCCCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhh
Q psy4020 1 MSSIRQVINDAVE----------RDTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKND 70 (530)
Q Consensus 1 ~~ei~~ei~~~~~----------~~i~mlG~d~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kD 70 (530)
++|||+|+++... -|+.|+|+|++|.-|++++.|+|+.+..||+||+++..-+....|+++|.+|.++||
T Consensus 38 l~e~r~E~k~~d~~~k~~a~~kl~yl~mlg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlmL~tn~~rkd 117 (877)
T KOG1059|consen 38 LEEIRQELKSDDLNVKSNAVLKLTYLEMLGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLMLTTNLLRKD 117 (877)
T ss_pred HHHHHHHhhchhhhhhHHHHHHHHHHHHHcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 4799999998743 299999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcc
Q psy4020 71 LNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAI 150 (530)
Q Consensus 71 L~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V 150 (530)
++|+|.|-.|+||..||++.+|++++++.++|..+|+|+.|||||+|++.+||+|.+|||.++..+|++.+-|.|.||+|
T Consensus 118 l~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V 197 (877)
T KOG1059|consen 118 LNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSV 197 (877)
T ss_pred hccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -------------------------------------hHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcch
Q psy4020 151 -------------------------------------HQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNT 193 (530)
Q Consensus 151 -------------------------------------~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~a 193 (530)
..++++++|..+.+.+|+.-.++.+-|..++.+| ...+
T Consensus 198 ~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT-----~AmS 272 (877)
T KOG1059|consen 198 VSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMEST-----VAMS 272 (877)
T ss_pred HHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhh-----HHHH
Confidence 6789999999999999999999999888888866 3788
Q ss_pred hHHHHHHHHhccC------CChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHH
Q psy4020 194 ILYETVLSIMDIK------SESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSI 267 (530)
Q Consensus 194 V~~eai~~i~~l~------~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~I 267 (530)
++|||++|++..+ ......++|+.+|..|+.++|+|+||++|-.+.+++..||..++.|..-|+.||+|.|.+|
T Consensus 273 LlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SI 352 (877)
T KOG1059|consen 273 LLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESI 352 (877)
T ss_pred HHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchh
Confidence 9999999998652 3456788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccChhhHHHHHHHHHHHhhhcCc-hhhhhhHHHHHHHHHh----hCCCchhHHHHHHHHHHHhhhhhhcc
Q psy4020 268 RRRALELSFALVNSANVRSMMKELLIFLEKSEP-DFKAHCSSNIVLCAER----FAPNKRWHLDTLLKVLVANLLGFSNR 342 (530)
Q Consensus 268 r~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~-~~~~~~i~~I~~la~k----~~~~~~~~vd~Ll~lL~~~~~~~v~~ 342 (530)
|.+||++++.|++++|+.+|++.|++|+..++. .||.+++.+|..+|.+ |-.+++||+.+++++-... + .+-
T Consensus 353 RlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~--~-~~~ 429 (877)
T KOG1059|consen 353 RLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLE--G-TRH 429 (877)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhcc--c-cch
Confidence 999999999999999999999999999999877 7999999999998864 4579999999999977651 1 111
Q ss_pred hhhhHHHHHHHHHHhhcCcchHHHHHhhcc
Q psy4020 343 ALRDQRRALELSFALVNSANVRSMMKELLI 372 (530)
Q Consensus 343 a~eiq~~a~e~~~ll~~~p~~r~~ile~l~ 372 (530)
+. ..+..+.++..+.|.+|+-.+..|.
T Consensus 430 G~---~I~eQi~Dv~iRV~~iR~fsV~~m~ 456 (877)
T KOG1059|consen 430 GS---LIAEQIIDVAIRVPSIRPFSVSQMS 456 (877)
T ss_pred hh---HHHHHHHHHheechhhhHhHHHHHH
Confidence 11 1245677888888888887776666
No 6
>KOG1061|consensus
Probab=100.00 E-value=1.3e-46 Score=400.44 Aligned_cols=351 Identities=21% Similarity=0.263 Sum_probs=311.0
Q ss_pred HHHHHHHhhh-hc-CCCCCCCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHH
Q psy4020 7 VINDAVERDT-YL-PKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALC 84 (530)
Q Consensus 7 ei~~~~~~~i-~m-lG~d~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr 84 (530)
.-++|.||.| .| +|.|+|..|+|++|++++.|++.|||+|||++.|+..+|+.+++++|++.||..++||.+|++|+|
T Consensus 29 kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlr 108 (734)
T KOG1061|consen 29 KRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALR 108 (734)
T ss_pred hHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhh
Confidence 3456677766 33 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH--hhHHHHHHhcCCCCCcc------------
Q psy4020 85 TLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME--IFLPATRLLLSDKNHAI------------ 150 (530)
Q Consensus 85 ~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~--~~i~~l~~lL~d~n~~V------------ 150 (530)
+++.++.+.+.+++..++.++++|.+|||||+|+.|+.++|..+|++.+ .+++.+.+++.|.||.|
T Consensus 109 tm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 109 TMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIH 188 (734)
T ss_pred ceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999886 69999999999999877
Q ss_pred -----------------------------hHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHH
Q psy4020 151 -----------------------------HQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLS 201 (530)
Q Consensus 151 -----------------------------~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~ 201 (530)
.|+.+++.+..|.+.++...+.+.+.+.+.+++ ++.+|++.++++
T Consensus 189 e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh------~n~avvlsavKv 262 (734)
T KOG1061|consen 189 ESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQH------ANSAVVLSAVKV 262 (734)
T ss_pred HhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhcc------CCcceEeehHHH
Confidence 799999999999998876666666666665553 488999999999
Q ss_pred HhccCC--C---hHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHH
Q psy4020 202 IMDIKS--E---SGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSF 276 (530)
Q Consensus 202 i~~l~~--~---~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~ 276 (530)
+++... . ..+.+....++..++. +.++++|++|+++..+.++.|+.+. +....|+|-+++++|||..|++++.
T Consensus 263 ~l~~~~~~~~~~~~~~~K~~~pl~tlls-~~~e~qyvaLrNi~lil~~~p~~~~-~~~~~Ff~kynDPiYvK~eKleil~ 340 (734)
T KOG1061|consen 263 ILQLVKYLKQVNELLFKKVAPPLVTLLS-SESEIQYVALRNINLILQKRPEILK-VEIKVFFCKYNDPIYVKLEKLEILI 340 (734)
T ss_pred HHHHHHHHHHHHHHHHHHhcccceeeec-ccchhhHHHHhhHHHHHHhChHHHH-hHhHeeeeecCCchhhHHHHHHHHH
Confidence 987642 1 2344455556666654 5559999999999999999999665 4556777999999999999999999
Q ss_pred hccChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHHhhhhhhcchhhhHHHHHHHHHH
Q psy4020 277 ALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALRDQRRALELSFA 356 (530)
Q Consensus 277 ~l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~~~~~~v~~a~eiq~~a~e~~~l 356 (530)
.+++.+|+.+++.||.+|..+.|.+|.+++|++||.+|.|+.+. +-||+++++++..++.|+|+++ .+.++++
T Consensus 341 ~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~------~vvi~di 413 (734)
T KOG1061|consen 341 ELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETKVDYVVQEA------IVVIRDI 413 (734)
T ss_pred HHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhcccceeeeh------hHHHHhh
Confidence 99999999999999999999999999999999999999999876 7899999999999999988865 4678999
Q ss_pred hhcCcchHHHHHhhcc
Q psy4020 357 LVNSANVRSMMKELLI 372 (530)
Q Consensus 357 l~~~p~~r~~ile~l~ 372 (530)
+|+||+..+.++.-++
T Consensus 414 lRkyP~~~~~vv~~l~ 429 (734)
T KOG1061|consen 414 LRKYPNKYESVVAILC 429 (734)
T ss_pred hhcCCCchhhhhhhhc
Confidence 9999999887776666
No 7
>KOG1058|consensus
Probab=100.00 E-value=1.1e-45 Score=387.96 Aligned_cols=352 Identities=19% Similarity=0.286 Sum_probs=309.6
Q ss_pred HHHHHhhhhc--CCCCCCCchHHHHH-hhcCCCCchhHHHHHHHHhhccCCh-----hHHHHHHHHHHhhcCCCChhhhh
Q psy4020 9 NDAVERDTYL--PKYPAHFGQLECLK-LIASSRFTDKRIGYLGAMLLLDERQ-----DVHLLITNSLKNDLNSSTQFVVG 80 (530)
Q Consensus 9 ~~~~~~~i~m--lG~d~sf~~~~vik-l~~S~~~~~Krl~YL~l~~~~~~~~-----e~~~L~~Nsl~kDL~s~n~~vr~ 80 (530)
-+|||+.|.+ .|.+.+..++.|++ .+.|.+.++||+.|+|+....+.++ +.++|+||+++|||+|||||+||
T Consensus 38 IeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG 117 (948)
T KOG1058|consen 38 IEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRG 117 (948)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcc
Confidence 4668887754 49999999999998 8999999999999999999988776 47889999999999999999999
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-------ChhhHHhhHHHHHHhcCCCCCcc---
Q psy4020 81 LALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILK-------VPELMEIFLPATRLLLSDKNHAI--- 150 (530)
Q Consensus 81 lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~-------~p~~i~~~i~~l~~lL~d~n~~V--- 150 (530)
..|||+|++..||+.++++|.|+.||.|+|+||||+|++|++.||+. .||++++|+...++.-+.+|..+
T Consensus 118 ~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~ 197 (948)
T KOG1058|consen 118 STLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLF 197 (948)
T ss_pred hhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 36777777755554444444322
Q ss_pred ------------------------hHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccC
Q psy4020 151 ------------------------HQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIK 206 (530)
Q Consensus 151 ------------------------~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~ 206 (530)
+|..|+++++..+..+|.....+++.+..+++++ +++|.|||+-++..++
T Consensus 198 ~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~st------ssaV~fEaa~tlv~lS 271 (948)
T KOG1058|consen 198 TTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSST------SSAVIFEAAGTLVTLS 271 (948)
T ss_pred hcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcC------CchhhhhhcceEEEcc
Confidence 8999999999999999998888999988888754 7899999999999999
Q ss_pred CChHHHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHH
Q psy4020 207 SESGLRVLAVNILGRFLL-NNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVR 285 (530)
Q Consensus 207 ~~~~l~~~~v~~L~~lL~-s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~ 285 (530)
++|...+.+++.+..++. .+|+|++.+.|+.|..+...+-.+++....++++.|+.+|.++|+++|++.+.|+...|++
T Consensus 272 ~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNve 351 (948)
T KOG1058|consen 272 NDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVE 351 (948)
T ss_pred CCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHH
Confidence 999999999999999885 7999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc-------CchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHHhhhhhhcchhhhHHHHHHHHHHhh
Q psy4020 286 SMMKELLIFLEKS-------EPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALRDQRRALELSFALV 358 (530)
Q Consensus 286 ~Iv~eL~~yl~~~-------d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~~~~~~v~~a~eiq~~a~e~~~ll~ 358 (530)
+|+.-|.+-+.+. ...||+.++++|+.||.+||..+...|..++++|++.. . ..|..+ ...+++.+.
T Consensus 352 div~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N-~--~aas~v---l~FvrE~ie 425 (948)
T KOG1058|consen 352 DIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSN-E--AAASDV---LMFVREAIE 425 (948)
T ss_pred HHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCC-H--HHHHHH---HHHHHHHHH
Confidence 9999999888653 35699999999999999999999999999999999821 1 111111 123478889
Q ss_pred cCcchHHHHHhhcc
Q psy4020 359 NSANVRSMMKELLI 372 (530)
Q Consensus 359 ~~p~~r~~ile~l~ 372 (530)
++|++|..++++|-
T Consensus 426 k~p~Lr~~ii~~l~ 439 (948)
T KOG1058|consen 426 KFPNLRASIIEKLL 439 (948)
T ss_pred hCchHHHHHHHHHH
Confidence 99999999998876
No 8
>KOG1060|consensus
Probab=100.00 E-value=1.8e-44 Score=380.61 Aligned_cols=329 Identities=18% Similarity=0.263 Sum_probs=290.3
Q ss_pred HHHHHHHHhhhhcC--CCCCCCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHH
Q psy4020 6 QVINDAVERDTYLP--KYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLAL 83 (530)
Q Consensus 6 ~ei~~~~~~~i~ml--G~d~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lAL 83 (530)
.|..+||||+|.|+ |.|++-.|++|||.++|++.+.||++|+|+..|++++||+++|.+|++||+|.++|+.+||.||
T Consensus 50 ~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasAL 129 (968)
T KOG1060|consen 50 SLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASAL 129 (968)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHH
Confidence 46789999999764 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcc-------------
Q psy4020 84 CTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAI------------- 150 (530)
Q Consensus 84 r~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V------------- 150 (530)
|.|++|+.|-+++.+.-.|+++..|++|||||.|++|+.|+|..+|+.-..+++.+..||.|+++.|
T Consensus 130 RvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 130 RVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred HHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhch
Confidence 9999999999999999999999999999999999999999999999988899999999999999987
Q ss_pred -----------------------hHHHHHHHHHhhcCC---Chhh------------------------------HHHHH
Q psy4020 151 -----------------------HQVKILKLLRILGKN---DVEA------------------------------SEAMN 174 (530)
Q Consensus 151 -----------------------~qi~iL~lL~~l~~~---~~~~------------------------------~~~l~ 174 (530)
.|+.++.+|.+|++. +|.. ...++
T Consensus 210 erldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL 289 (968)
T KOG1060|consen 210 ERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLL 289 (968)
T ss_pred hHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHH
Confidence 799999999999754 2210 11222
Q ss_pred HHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHH
Q psy4020 175 DILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRN 254 (530)
Q Consensus 175 ~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~ 254 (530)
+-..++++ ++ +++|++.+++++.++.+..+ ...++..|.++|. +.+++||++|+++..+....|.+|.+|..
T Consensus 290 ~stkpLl~----S~--n~sVVmA~aql~y~lAP~~~-~~~i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lK 361 (968)
T KOG1060|consen 290 QSTKPLLQ----SR--NPSVVMAVAQLFYHLAPKNQ-VTKIAKALVRLLR-SNREVQYVVLQNIATISIKRPTLFEPHLK 361 (968)
T ss_pred HhccHHHh----cC--CcHHHHHHHhHHHhhCCHHH-HHHHHHHHHHHHh-cCCcchhhhHHHHHHHHhcchhhhhhhhh
Confidence 22333333 33 78999999999999876543 4567888999875 46889999999999999999999999999
Q ss_pred HHhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 255 TILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 255 ~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
.||-| ..++..+|..||++|..|+|++|+..|++||..|+.+.|.+|....|++||+||.+.-...+.|++.|+.+++.
T Consensus 362 sFfv~-ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llss 440 (968)
T KOG1060|consen 362 SFFVR-SSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSS 440 (968)
T ss_pred ceEee-cCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhc
Confidence 88755 44457899999999999999999999999999999999999999999999999999988889999999999998
Q ss_pred hhhhhhcch
Q psy4020 335 NLLGFSNRA 343 (530)
Q Consensus 335 ~~~~~v~~a 343 (530)
+-..+|.+|
T Consensus 441 hde~Vv~ea 449 (968)
T KOG1060|consen 441 HDELVVAEA 449 (968)
T ss_pred ccchhHHHH
Confidence 644455544
No 9
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.4e-37 Score=337.53 Aligned_cols=331 Identities=17% Similarity=0.204 Sum_probs=270.4
Q ss_pred HHHHHHHHhhhh--cCCCCCCCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHH
Q psy4020 6 QVINDAVERDTY--LPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLAL 83 (530)
Q Consensus 6 ~ei~~~~~~~i~--mlG~d~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lAL 83 (530)
++..+|||+.|. +.|+||+..|++|+|.+++.|.++|||+|+|+..|++.+|++++|++|+++||++|+||++||+||
T Consensus 34 ~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~Al 113 (757)
T COG5096 34 YKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFAL 113 (757)
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHH
Confidence 567899999883 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHh--hHHHHHHhcCCCCCcchHHH-------
Q psy4020 84 CTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEI--FLPATRLLLSDKNHAIHQVK------- 154 (530)
Q Consensus 84 r~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~--~i~~l~~lL~d~n~~V~qi~------- 154 (530)
|+||.++.+++++.++++|+++++|++|||||+|++|+.++|+.+|++..+ ....+..++.|.||-|.-.+
T Consensus 114 R~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 114 RTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEI 193 (757)
T ss_pred HHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998874 67888899999999872111
Q ss_pred ----------------------------------HHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHH
Q psy4020 155 ----------------------------------ILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVL 200 (530)
Q Consensus 155 ----------------------------------iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~ 200 (530)
++..|..+.+.+|...+.+.+.+....+ +.+.+|+.-+++
T Consensus 194 ~~e~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~------~~n~~vl~~av~ 267 (757)
T COG5096 194 DPELAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQ------HNNAEVLLIAVK 267 (757)
T ss_pred chhhhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhh------hCcHHHHHHHHH
Confidence 1111111222222222222222222111 236778888888
Q ss_pred HHhccCC---ChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHh
Q psy4020 201 SIMDIKS---ESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFA 277 (530)
Q Consensus 201 ~i~~l~~---~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~ 277 (530)
.++.+.. ...+....-+++..++..+...+.|+.......+....+..+. +...++.|-+++|.+++.++++++..
T Consensus 268 ~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~-~~~~~f~~~~~~~i~~~lek~~~~t~ 346 (757)
T COG5096 268 VILRLLVFLPSNNLFLISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLD-KVKKLFLIEYNDDIYIKLEKLDQLTR 346 (757)
T ss_pred HHHHHhhhhccccHHHhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHH-HHhhhhhhhccchHHHHHHHHHHHhh
Confidence 8876532 2224445556677776554477888888888888888887765 57788889899999999999999999
Q ss_pred ccChhhHHHHHHHHHHHhhh--cCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHH---Hhhhhhhcch
Q psy4020 278 LVNSANVRSMMKELLIFLEK--SEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLV---ANLLGFSNRA 343 (530)
Q Consensus 278 l~n~~Nv~~Iv~eL~~yl~~--~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~---~~~~~~v~~a 343 (530)
+++.+|...++.|+..|+.+ .|.++.++++++||.++.+.+....-|++.++.++. .+.-|+++++
T Consensus 347 l~~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~lel~~g~~~~~~Yi~~e~ 417 (757)
T COG5096 347 LADDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLEGVWIRGSYIVQEV 417 (757)
T ss_pred cCCchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccchhhccchhhhhh
Confidence 99999999999999999999 899999999999999999998878899999999999 5555655554
No 10
>KOG1078|consensus
Probab=100.00 E-value=2.4e-32 Score=289.85 Aligned_cols=354 Identities=19% Similarity=0.256 Sum_probs=300.3
Q ss_pred hhhhcCCCCCCCc-------hHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHH
Q psy4020 14 RDTYLPKYPAHFG-------QLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTL 86 (530)
Q Consensus 14 ~~i~mlG~d~sf~-------~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l 86 (530)
|.++|+..+.+|+ ||-+.||++|+|..+||++|+++..+..-..|+. +++++++||.+..++.+|+.|||+|
T Consensus 46 kllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedvi-ivtsslmkD~t~~~d~yr~~AiR~L 124 (865)
T KOG1078|consen 46 KLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVI-IVTSSLMKDMTGKEDLYRAAAIRAL 124 (865)
T ss_pred HHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhh-hhhHHHHhhccCCCcchhHHHHHHH
Confidence 4567776666654 5668899999999999999999999987666654 8999999999999999999999999
Q ss_pred hcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcc--------hH------
Q psy4020 87 GAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAI--------HQ------ 152 (530)
Q Consensus 87 ~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V--------~q------ 152 (530)
|+|.+..|+..+.+.+++++.|++|.|+..|....+|++...++.+.+|.+.+++...+.|..+ -|
T Consensus 125 ~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~dr 204 (865)
T KOG1078|consen 125 CSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDR 204 (865)
T ss_pred HhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999999999999999999999999999888877644 01
Q ss_pred HHHHHHHHhhcC---------------------CChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC-ChH
Q psy4020 153 VKILKLLRILGK---------------------NDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKS-ESG 210 (530)
Q Consensus 153 i~iL~lL~~l~~---------------------~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~-~~~ 210 (530)
+.+.+++..+.+ .++.....+.+++..++.+ ...+|.|||++.+..+.. .+.
T Consensus 205 la~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~------K~emV~~EaArai~~l~~~~~r 278 (865)
T KOG1078|consen 205 LAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRH------KSEMVIYEAARAIVSLPNTNSR 278 (865)
T ss_pred HHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhc------hhHHHHHHHHHHHhhccccCHh
Confidence 122333333332 1222223455666666654 378999999999999875 344
Q ss_pred HHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHH
Q psy4020 211 LRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKE 290 (530)
Q Consensus 211 l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~e 290 (530)
....++..|+.|+.+..+-+||.|.+.|++++..+|..+..+..++..++.|.+.+|...|+..+++.++++|++.+++.
T Consensus 279 ~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~q 358 (865)
T KOG1078|consen 279 ELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQ 358 (865)
T ss_pred hcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHH
Confidence 55568999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHHhhhhhhcchhhhHHHHHHH-HHHhhcCcchHHHHHh
Q psy4020 291 LLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALRDQRRALEL-SFALVNSANVRSMMKE 369 (530)
Q Consensus 291 L~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~~~~~~v~~a~eiq~~a~e~-~~ll~~~p~~r~~ile 369 (530)
+..|+.+.+++||...+.+|..+|.+||.....+.+.|.++|.. +|+.|.++..++. ..+++..|+.|+..++
T Consensus 359 I~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~------eGg~e~K~aivd~Ii~iie~~pdsKe~~L~ 432 (865)
T KOG1078|consen 359 ISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLRE------EGGFEFKRAIVDAIIDIIEENPDSKERGLE 432 (865)
T ss_pred HHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHh------ccCchHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 99999999999999999999999999998765555555555554 6788887776654 6777789999999999
Q ss_pred hcc-CCCCCCCc
Q psy4020 370 LLI-FLEKSEPD 380 (530)
Q Consensus 370 ~l~-~l~~~~~~ 380 (530)
+|| |+|+|++.
T Consensus 433 ~LCefIEDce~~ 444 (865)
T KOG1078|consen 433 HLCEFIEDCEFT 444 (865)
T ss_pred HHHHHHHhccch
Confidence 999 99999985
No 11
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.98 E-value=8.9e-31 Score=268.92 Aligned_cols=353 Identities=19% Similarity=0.186 Sum_probs=300.5
Q ss_pred hhhcCCCCCCC-------chHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCCh-hhhhHHHHHH
Q psy4020 15 DTYLPKYPAHF-------GQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQ-FVVGLALCTL 86 (530)
Q Consensus 15 ~i~mlG~d~sf-------~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~-~vr~lALr~l 86 (530)
..+|+..+..| .|+.+.|+++++|..+|+.+|+++..+..-..|+. |.+|+++||++...| .++..|+|+|
T Consensus 48 l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvl-m~tssiMkD~~~g~~~~~kp~AiRsL 126 (898)
T COG5240 48 LFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVL-MGTSSIMKDLNGGVPDDVKPMAIRSL 126 (898)
T ss_pred HHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhh-HHHHHHHHhhccCCccccccHHHHHH
Confidence 45666555555 67889999999999999999999999987776654 999999999999887 9999999999
Q ss_pred hcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCC--------CCcc--------
Q psy4020 87 GAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDK--------NHAI-------- 150 (530)
Q Consensus 87 ~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~--------n~~V-------- 150 (530)
-++...+++.+..+.+.+.+.++++.+|.+|+...||++...-+.+++|.++.++..-|- |.|.
T Consensus 127 ~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~is 206 (898)
T COG5240 127 FSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPIS 206 (898)
T ss_pred HHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHH
Confidence 999999999999999999999999999999999999999988899999999988876541 1111
Q ss_pred -----------------hHHHHHHHHHh-------------------hcCCChhhHHHHHHHHHHHhhcccCCCCCcchh
Q psy4020 151 -----------------HQVKILKLLRI-------------------LGKNDVEASEAMNDILAQVATNTETSKNVGNTI 194 (530)
Q Consensus 151 -----------------~qi~iL~lL~~-------------------l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV 194 (530)
+|.++++.|+. +...+++....|..+|..++++. ..+|
T Consensus 207 qYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k------~emV 280 (898)
T COG5240 207 QYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDK------FEMV 280 (898)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCc------chhh
Confidence 34444444431 12234444456666777776643 7899
Q ss_pred HHHHHHHHhccCC---ChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHH
Q psy4020 195 LYETVLSIMDIKS---ESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRA 271 (530)
Q Consensus 195 ~~eai~~i~~l~~---~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~a 271 (530)
.+|+++.++.++. .++....+++.|..||.+...-.||.|++.|++++..+|+.+.-+...+..++.|.+.+|..-|
T Consensus 281 ~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyA 360 (898)
T COG5240 281 FLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYA 360 (898)
T ss_pred hHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHH
Confidence 9999999998642 4778889999999999999999999999999999999999887778888899999999999999
Q ss_pred HHHHHhccChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHHhhhhhhcchhhhHHHHH
Q psy4020 272 LELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALRDQRRAL 351 (530)
Q Consensus 272 L~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~~~~~~v~~a~eiq~~a~ 351 (530)
+..|++.+|++|++.+++.+-.|+.+..+.||.-+|.++..++.+||.....+++.|.+.|.. +|+.|+++.++
T Consensus 361 ITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~------eGg~eFK~~~V 434 (898)
T COG5240 361 ITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ------EGGLEFKKYMV 434 (898)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh------cccchHHHHHH
Confidence 999999999999999999999999999999999999999999999998766666666655543 68899998888
Q ss_pred HH-HHHhhcCcchHHHHHhhcc-CCCCCCCc
Q psy4020 352 EL-SFALVNSANVRSMMKELLI-FLEKSEPD 380 (530)
Q Consensus 352 e~-~~ll~~~p~~r~~ile~l~-~l~~~~~~ 380 (530)
+. .+++.+.|+.|+.++|.|| |+|+|++.
T Consensus 435 daisd~~~~~p~skEraLe~LC~fIEDcey~ 465 (898)
T COG5240 435 DAISDAMENDPDSKERALEVLCTFIEDCEYH 465 (898)
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHhhcchh
Confidence 65 7899999999999999999 99999984
No 12
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=99.90 E-value=2.3e-23 Score=181.63 Aligned_cols=106 Identities=35% Similarity=0.637 Sum_probs=95.8
Q ss_pred ceeEEEeCCCcEEEEEeecCCCCCCeEEEEEEEeeCCcccccceEEEEeecCceEEEeeCCCCCCCCCCCCceEEEEEEe
Q psy4020 421 VSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPPSDTNIPPGSQVTQTLRVAK 500 (530)
Q Consensus 421 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l~l~p~Sg~~l~~~~~itQ~~~i~~ 500 (530)
|++++|+++||+|.|.+.+ +.+++..++.++|+|+++.+|++|+||+||||+++|+|+|+||++|+|++.++|.|.|
T Consensus 1 ~~~~~ye~~~l~I~~~~~~-~~~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v-- 77 (115)
T PF02883_consen 1 PEGVLYEDNGLQIGFKSEK-SPNPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKV-- 77 (115)
T ss_dssp SEEEEEEETTEEEEEEEEE-CCETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEE--
T ss_pred CCEEEEeCCCEEEEEEEEe-cCCCCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEE--
Confidence 5788999999999999998 4557889999999999999999999999999999999999999999999999999999
Q ss_pred cCC-----CCCcceeEEEEEEEEECCeeeeeeeeC
Q psy4020 501 ANN-----NVQASLRMRIKVSYNVNGTFIQDQAEI 530 (530)
Q Consensus 501 ~~~-----~~~~~~~lr~k~~y~~~~~~~~e~~~v 530 (530)
.+ +.+++++||||++|++||++++|+++|
T Consensus 78 -~~~~~~~~~~~~l~~~~~vsy~~~g~~~~~~~~v 111 (115)
T PF02883_consen 78 -ENSPFSEPTPKPLKPRLRVSYNVGGQPVLELGEV 111 (115)
T ss_dssp -EESS-BSTTSSTTEEEEEEEEEETTEEEEEEEEE
T ss_pred -EEeecccCCCCCcCeEEEEEEEECCEEEEEEeee
Confidence 55 678999999999999999999999986
No 13
>KOG1086|consensus
Probab=99.89 E-value=7.1e-24 Score=211.63 Aligned_cols=122 Identities=26% Similarity=0.488 Sum_probs=110.1
Q ss_pred hhhhhhhccCC--CCCCceeEEEeCCCcEEEEEeecC--CCCCCeEEEEEEEeeCCcccccceEEEEeecCceEEEeeCC
Q psy4020 406 TLLKVLVAVSE--NKDKVSVKAYDNHGVVINLLLDSQ--TPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPP 481 (530)
Q Consensus 406 ~l~dll~~~~~--~~~~~~~~~~~~~~l~i~~~~~~~--~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l~l~p~ 481 (530)
+|-.+..++++ |+..++++||+++|.||-|||+++ ++++++.+++++..|+.++||.+++||+||||+|+++|||+
T Consensus 451 sLa~i~VPlesikPsn~~Pv~vyd~~GfRILlhfaq~~~pg~sdV~v~vlsmlntap~pikdI~lq~avpk~mkvkLQp~ 530 (594)
T KOG1086|consen 451 SLASIAVPLESIKPSNRLPVTVYDSNGFRILLHFAQSDMPGRSDVLVVVLSMLNTAPQPIKDIVLQLAVPKSMKVKLQPP 530 (594)
T ss_pred cccccccchhhcCcCCCCCeEEEccCCcEEEeeeccCCCCCCCceEEEEEEeecCCCcchhhheeeeccccceeeeccCC
Confidence 33344444443 556778999999999999999998 44789999999999999999999999999999999999999
Q ss_pred CCCCCCC------CCCceEEEEEEecCCCCCcceeEEEEEEEEECCeeeeeeeeC
Q psy4020 482 SDTNIPP------GSQVTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQDQAEI 530 (530)
Q Consensus 482 Sg~~l~~------~~~itQ~~~i~~~~~~~~~~~~lr~k~~y~~~~~~~~e~~~v 530 (530)
||+.|++ +.+|||++++ +||.++++|+|||++|+.||++.+|+|+|
T Consensus 531 sgteL~~Fspi~ppaaitqvlll---anp~ke~vrlrykltf~~g~q~~~evgev 582 (594)
T KOG1086|consen 531 SGTELPAFSPIMPPAAITQVLLL---ANPHKEKVRLRYKLTFNQGGQPFSEVGEV 582 (594)
T ss_pred CcccCCCCCCCCChHHHHHHHHh---cCccccceeEEEEEEeecCCccchhcccc
Confidence 9999998 7889999999 99999999999999999999999999997
No 14
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=99.86 E-value=6e-21 Score=163.33 Aligned_cols=100 Identities=36% Similarity=0.714 Sum_probs=93.7
Q ss_pred EEeCCCcEEEEEeecCCCCCCeEEEEEEEeeCCcccccceEEEEeecCceEEEeeCCCCCCCCCCCCceEEEEEEecCCC
Q psy4020 425 AYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPPSDTNIPPGSQVTQTLRVAKANNN 504 (530)
Q Consensus 425 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l~l~p~Sg~~l~~~~~itQ~~~i~~~~~~ 504 (530)
+|+++||+|.|.+.+.+ +.+.+.++|+|.++.+|++|+||+||||+++++|+|+||+.|+|++.++|.+.| .++
T Consensus 1 ~~~~~~l~I~~~~~~~~---~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i---~~~ 74 (104)
T smart00809 1 AYEKNGLQIGFKFERRP---GLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKV---ENP 74 (104)
T ss_pred CccCCCEEEEEEEEcCC---CeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEE---ECC
Confidence 58999999999999863 568999999999999999999999999999999999999999998889999999 887
Q ss_pred CCcceeEEEEEEEEECCeeeeeeeeC
Q psy4020 505 VQASLRMRIKVSYNVNGTFIQDQAEI 530 (530)
Q Consensus 505 ~~~~~~lr~k~~y~~~~~~~~e~~~v 530 (530)
...+++||||++|.+||.+++|++++
T Consensus 75 ~~~~~~~~~~vsy~~~g~~~~~~~~~ 100 (104)
T smart00809 75 GKFPLRLRLRLSYLLGGSAVTEQGDV 100 (104)
T ss_pred CCCCEEEEEEEEEEECCEEEEEEEEe
Confidence 77899999999999999999999875
No 15
>KOG1062|consensus
Probab=99.42 E-value=2.9e-12 Score=138.20 Aligned_cols=309 Identities=27% Similarity=0.334 Sum_probs=208.2
Q ss_pred ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhH
Q psy4020 91 SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEAS 170 (530)
Q Consensus 91 ~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~ 170 (530)
..|+.--+...+++=|+|++-||---|+.++..+ ..||+++.+.|.+.++++.+++.|..-.++-. .++.+..|+..
T Consensus 101 ~qdvllLltNslknDL~s~nq~vVglAL~alg~i--~s~EmardlapeVe~Ll~~~~~~irKKA~Lca-~r~irK~P~l~ 177 (866)
T KOG1062|consen 101 RQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNI--CSPEMARDLAPEVERLLQHRDPYIRKKAALCA-VRFIRKVPDLV 177 (866)
T ss_pred chHHHHHHHHHHHhhccCCCeeehHHHHHHhhcc--CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHH-HHHHHcCchHH
Confidence 4666677889999999999999999998888877 47999999999999999999998854333333 34456678777
Q ss_pred HHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhcc---CCC-----hHHHHHHHHHHHHhcc-----------CCCchhH
Q psy4020 171 EAMNDILAQVATNTETSKNVGNTILYETVLSIMDI---KSE-----SGLRVLAVNILGRFLL-----------NNDKNIR 231 (530)
Q Consensus 171 ~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l---~~~-----~~l~~~~v~~L~~lL~-----------s~d~nir 231 (530)
+.+..--...+... ++.|+..++..+..+ +.+ .++....+.+|..+.. -+||=++
T Consensus 178 e~f~~~~~~lL~ek------~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQ 251 (866)
T KOG1062|consen 178 EHFVIAFRKLLCEK------HHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQ 251 (866)
T ss_pred HHhhHHHHHHHhhc------CCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHH
Confidence 66655444444432 466777777665543 111 1122233334433331 1366667
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHhh-hccCCc------HHHHHHHHHHHHhccChhhHHHH-HHHHHHHhhhcCchhh
Q psy4020 232 YVALNTLLRTVYIDTSAVQRHRNTILE-CLKDPD------VSIRRRALELSFALVNSANVRSM-MKELLIFLEKSEPDFK 303 (530)
Q Consensus 232 y~aL~~L~~l~~~~p~~~~~~~~~i~~-~l~d~d------~~Ir~~aL~ll~~l~n~~Nv~~I-v~eL~~yl~~~d~~~~ 303 (530)
.-.|+.|..+.+.+++.-.. ..+++. .....| -.|=-.+...++.+-.++-.... ++-|-+|+...|...|
T Consensus 252 i~iLrlLriLGq~d~daSd~-M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~Nir 330 (866)
T KOG1062|consen 252 IRILRLLRILGQNDADASDL-MNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIR 330 (866)
T ss_pred HHHHHHHHHhcCCCccHHHH-HHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCcccee
Confidence 77777777777666643221 112221 111111 12444444444444333322222 2444556666666666
Q ss_pred hhhHHHHHHHHHhhCCCchhHHHHHHHHHHHhhhhhhcchhhhHHHHHHHHHHhhcCcchHHHHHhhccCCCCCCCcccc
Q psy4020 304 AHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALRDQRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKA 383 (530)
Q Consensus 304 ~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~~~~~~v~~a~eiq~~a~e~~~ll~~~p~~r~~ile~l~~l~~~~~~l~~ 383 (530)
-..+..+.+....-|.....+=-+++++|.+- -.++|+||.|+...+.+..|+|..+-|.|-|++.++.++++
T Consensus 331 YvaLn~L~r~V~~d~~avqrHr~tIleCL~Dp-------D~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~ 403 (866)
T KOG1062|consen 331 YVALNMLLRVVQQDPTAVQRHRSTILECLKDP-------DVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDFKA 403 (866)
T ss_pred eeehhhHHhhhcCCcHHHHHHHHHHHHHhcCC-------cHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHHHH
Confidence 66666666666555555556666777777751 13799999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCCCCcCCcchhhhhhhhccCC
Q psy4020 384 HCSSNIVLCAERFAPNKRWHLDTLLKVLVAVSE 416 (530)
Q Consensus 384 ~~~~~~~~~~~~~~p~~~~~~~~l~dll~~~~~ 416 (530)
.+++++...+++|||+++||+|+++.||...++
T Consensus 404 ~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~ 436 (866)
T KOG1062|consen 404 DIASKIAELAEKFAPDKRWHIDTMLKVLKTAGD 436 (866)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHhccc
Confidence 999999999999999999999999999986443
No 16
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.29 E-value=3.5e-11 Score=131.68 Aligned_cols=351 Identities=24% Similarity=0.337 Sum_probs=252.0
Q ss_pred hhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC--ChhhHHHHHHHHHHHhcCCCHHHHHHHH
Q psy4020 41 DKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA--SPEMSRDLASEVERLMKSSNAYIRKKAA 118 (530)
Q Consensus 41 ~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~--~~el~~~l~~~V~~~l~~~~~yVRK~A~ 118 (530)
.+|+.|+...-+ +-+ .....+-+-+.++|...+-++--+++.+. +++.+--+.+.+.+-+.|++|++|--|+
T Consensus 27 l~kli~~~~~G~---~~~---~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL 100 (526)
T PF01602_consen 27 LKKLIYLMMLGY---DIS---FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLAL 100 (526)
T ss_dssp HHHHHHHHHTT------G---STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHH
T ss_pred HHHHHHHHHcCC---CCc---hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 455666555443 222 22234555566888888777766666554 6887788899999999999999999999
Q ss_pred HHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHH-HHHHHHHHhhcccCCCCCcchhHHH
Q psy4020 119 LCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEA-MNDILAQVATNTETSKNVGNTILYE 197 (530)
Q Consensus 119 la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~-l~~iL~~~l~~~~~~~n~~~aV~~e 197 (530)
-++.++. .|++++.+.+.+.+++.|+++-|-.-.++-+.+.+ +.+|+..+. +.+.+.+.+... ++.|...
T Consensus 101 ~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~-~~~p~~~~~~~~~~l~~lL~d~------~~~V~~~ 171 (526)
T PF01602_consen 101 RTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIY-RKDPDLVEDELIPKLKQLLSDK------DPSVVSA 171 (526)
T ss_dssp HHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHH-HHCHCCHHGGHHHHHHHHTTHS------SHHHHHH
T ss_pred hhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhhhccCC------cchhHHH
Confidence 9999985 89999999999999999999988443333333332 335655444 677777777543 6789999
Q ss_pred HHHHHhcc-CCCh---HHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHH--HHHHHHHhhhccCCcHHHHHHH
Q psy4020 198 TVLSIMDI-KSES---GLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAV--QRHRNTILECLKDPDVSIRRRA 271 (530)
Q Consensus 198 ai~~i~~l-~~~~---~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~--~~~~~~i~~~l~d~d~~Ir~~a 271 (530)
|+.++..+ .++. .+....+..|.+++...+|-.+...++.+..+....+..- ......+..++++.+.+|...+
T Consensus 172 a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~ 251 (526)
T PF01602_consen 172 ALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEA 251 (526)
T ss_dssp HHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHH
Confidence 99999888 3332 3456677778888888899999999999999888777766 5677778888888999999999
Q ss_pred HHHHHhccChhh-HHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHHhhhhhhcchhhhHHHH
Q psy4020 272 LELSFALVNSAN-VRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALRDQRRA 350 (530)
Q Consensus 272 L~ll~~l~n~~N-v~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~~~~~~v~~a~eiq~~a 350 (530)
..++..+..... +..+++-|..++.+.|.+.|--++..|..++.++++... .....+.++.. ..-.+++.++
T Consensus 252 ~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~------~~d~~Ir~~~ 324 (526)
T PF01602_consen 252 IRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLY------DDDPSIRKKA 324 (526)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHC------SSSHHHHHHH
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhheecC------CCChhHHHHH
Confidence 999999887776 788899999999988888999999999999988733222 22333334442 1123566777
Q ss_pred HHHHHHhhcCcchHHHHHhhccCC-CCCCCccccCCCCCcccccccCCCCcCCcchhhhhhhhc
Q psy4020 351 LELSFALVNSANVRSMMKELLIFL-EKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 413 (530)
Q Consensus 351 ~e~~~ll~~~p~~r~~ile~l~~l-~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~l~dll~~ 413 (530)
+++...+.+..|+...+-+.+.++ +.+++++.......+...+.++++...|..+.+++++..
T Consensus 325 l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~ 388 (526)
T PF01602_consen 325 LDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI 388 (526)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC
T ss_pred HHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh
Confidence 777665656667777666777787 555666554443344556666777777899999988885
No 17
>PTZ00429 beta-adaptin; Provisional
Probab=99.07 E-value=4.5e-08 Score=109.92 Aligned_cols=307 Identities=14% Similarity=0.111 Sum_probs=197.6
Q ss_pred HHHHHHhhhhcCCCCCCCc-------hHHHHHhhcCCCCchhHHHH---HHHHhhccCChhHHHHHHHHHHhhcCCCChh
Q psy4020 8 INDAVERDTYLPKYPAHFG-------QLECLKLIASSRFTDKRIGY---LGAMLLLDERQDVHLLITNSLKNDLNSSTQF 77 (530)
Q Consensus 8 i~~~~~~~i~mlG~d~sf~-------~~~vikl~~S~~~~~Krl~Y---L~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~ 77 (530)
+.+.+++...--|.+-.+. ..|+-+.+.|++-..||-+- ++.+..-. |+..+....+ |-+.++|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~f~~~~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~---DvS~LF~dVv-k~~~S~d~e 83 (746)
T PTZ00429 8 ARERIQRKLEETKTGSKYFAQTRRGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGR---DVSYLFVDVV-KLAPSTDLE 83 (746)
T ss_pred HHHHHHHHhhcCCCccccccccccchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC---CchHHHHHHH-HHhCCCCHH
Confidence 3344444444345554432 25677788887766554442 22222222 3333333333 255677888
Q ss_pred hhhHHHHHHhcCC--ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHH
Q psy4020 78 VVGLALCTLGAIA--SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKI 155 (530)
Q Consensus 78 vr~lALr~l~~i~--~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~i 155 (530)
+|-+.--.+.++. .||.+--.++.+.+=+.|+||+||--|+-++.++ ..|++++..++.+.+++.|+++-|-...+
T Consensus 84 lKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I--r~~~i~e~l~~~lkk~L~D~~pYVRKtAa 161 (746)
T PTZ00429 84 LKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI--RVSSVLEYTLEPLRRAVADPDPYVRKTAA 161 (746)
T ss_pred HHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 8777766666655 4888888899999999999999999999999877 68999999999999999999999955555
Q ss_pred HHHHHhhcCCChhh--HHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCC-hHHH---HHHHHHHHHhccCCCch
Q psy4020 156 LKLLRILGKNDVEA--SEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSE-SGLR---VLAVNILGRFLLNNDKN 229 (530)
Q Consensus 156 L~lL~~l~~~~~~~--~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~-~~l~---~~~v~~L~~lL~s~d~n 229 (530)
+-+++.|. .+|+. ...+.+.|..++.. .++.|+..|+.++.++... ++-. ...+..|...|..-+.=
T Consensus 162 lai~Kly~-~~pelv~~~~~~~~L~~LL~D------~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW 234 (746)
T PTZ00429 162 MGLGKLFH-DDMQLFYQQDFKKDLVELLND------NNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEW 234 (746)
T ss_pred HHHHHHHh-hCcccccccchHHHHHHHhcC------CCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChH
Confidence 55555442 23332 12344445455543 2778999999998887532 2222 23334444444455566
Q ss_pred hHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccCh---hhHHHHHHHHHH---HhhhcCchhh
Q psy4020 230 IRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNS---ANVRSMMKELLI---FLEKSEPDFK 303 (530)
Q Consensus 230 iry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~---~Nv~~Iv~eL~~---yl~~~d~~~~ 303 (530)
.+...|+.|......+..-.......+..+|.+.+.+|...|..+++.+.+. +-++.++..+.. .+...+++.+
T Consensus 235 ~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiq 314 (746)
T PTZ00429 235 GQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQ 314 (746)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHH
Confidence 7777777775543333333344455666778888999999999999998864 333443333322 4455688899
Q ss_pred hhhHHHHHHHHHhhCCCchhHHHH
Q psy4020 304 AHCSSNIVLCAERFAPNKRWHLDT 327 (530)
Q Consensus 304 ~~~i~~I~~la~k~~~~~~~~vd~ 327 (530)
--+++.|..++.++|.-...+++.
T Consensus 315 yvaLr~I~~i~~~~P~lf~~~~~~ 338 (746)
T PTZ00429 315 YIVCKNIHALLVIFPNLLRTNLDS 338 (746)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHh
Confidence 999999999998887544334433
No 18
>PRK09687 putative lyase; Provisional
Probab=99.01 E-value=3.7e-08 Score=99.06 Aligned_cols=238 Identities=15% Similarity=0.097 Sum_probs=169.9
Q ss_pred HHHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhh-HHhhHHHHH
Q psy4020 62 LITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPEL-MEIFLPATR 140 (530)
Q Consensus 62 L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~-i~~~i~~l~ 140 (530)
...+.+.+=|.|+|..+|..|+..|..++.++.. +.+.+++.|.++.||+.|+-++..+-. |+. ....++.+.
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~----~~l~~ll~~~d~~vR~~A~~aLg~lg~--~~~~~~~a~~~L~ 96 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQDVF----RLAIELCSSKNPIERDIGADILSQLGM--AKRCQDNVFNILN 96 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHH----HHHHHHHhCCCHHHHHHHHHHHHhcCC--CccchHHHHHHHH
Confidence 3456677778999999999999999999987655 445567899999999999999998743 221 245666677
Q ss_pred Hh-cCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHH
Q psy4020 141 LL-LSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNIL 219 (530)
Q Consensus 141 ~l-L~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L 219 (530)
.+ +.|.++.| .-.....|..++...+.......+.+...+.. .+.-|.+.++..+..+... .++..|
T Consensus 97 ~l~~~D~d~~V-R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D------~~~~VR~~a~~aLg~~~~~-----~ai~~L 164 (280)
T PRK09687 97 NLALEDKSACV-RASAINATGHRCKKNPLYSPKIVEQSQITAFD------KSTNVRFAVAFALSVINDE-----AAIPLL 164 (280)
T ss_pred HHHhcCCCHHH-HHHHHHHHhcccccccccchHHHHHHHHHhhC------CCHHHHHHHHHHHhccCCH-----HHHHHH
Confidence 66 67777766 34456666666544322122233333333332 2567999999999777543 367888
Q ss_pred HHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcC
Q psy4020 220 GRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSE 299 (530)
Q Consensus 220 ~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d 299 (530)
..+|.++++.+|+.+...|..+....|..+. .++..+.|+|..+|..|+.-|..+.++. .+.-|.+++.+.+
T Consensus 165 ~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~----~L~~~L~D~~~~VR~~A~~aLg~~~~~~----av~~Li~~L~~~~ 236 (280)
T PRK09687 165 INLLKDPNGDVRNWAAFALNSNKYDNPDIRE----AFVAMLQDKNEEIRIEAIIGLALRKDKR----VLSVLIKELKKGT 236 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcCCCCCHHHHH----HHHHHhcCCChHHHHHHHHHHHccCChh----HHHHHHHHHcCCc
Confidence 9999999999999999999998544666543 3667789999999999999999988764 4556666665433
Q ss_pred chhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHH
Q psy4020 300 PDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLV 333 (530)
Q Consensus 300 ~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~ 333 (530)
++..++.++|.+..+ ..+..|..++.
T Consensus 237 --~~~~a~~ALg~ig~~------~a~p~L~~l~~ 262 (280)
T PRK09687 237 --VGDLIIEAAGELGDK------TLLPVLDTLLY 262 (280)
T ss_pred --hHHHHHHHHHhcCCH------hHHHHHHHHHh
Confidence 677788887777653 45677777776
No 19
>PRK09687 putative lyase; Provisional
Probab=98.85 E-value=8.8e-07 Score=89.16 Aligned_cols=248 Identities=14% Similarity=0.123 Sum_probs=177.9
Q ss_pred HHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChhh-HHHHHHHHHHH-h
Q psy4020 29 ECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEM-SRDLASEVERL-M 106 (530)
Q Consensus 29 ~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el-~~~l~~~V~~~-l 106 (530)
+.++++.+++...|.-+--.+..+- .++..-+ +.+-++|+|+.+|-.|...|+.+..+.- .+...+.+... +
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~--~~~~~~~----l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~ 100 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRG--GQDVFRL----AIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL 100 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcC--cchHHHH----HHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh
Confidence 4677889999998888777776553 3444433 3444678999999999999999997543 24455666655 7
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccC
Q psy4020 107 KSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTET 186 (530)
Q Consensus 107 ~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~ 186 (530)
.|+++.||+.|+-++.++....+.-...+++.+..++.|.++.| .......|..++ +++. .+.|...+...
T Consensus 101 ~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~V-R~~a~~aLg~~~--~~~a----i~~L~~~L~d~-- 171 (280)
T PRK09687 101 EDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNV-RFAVAFALSVIN--DEAA----IPLLINLLKDP-- 171 (280)
T ss_pred cCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHH-HHHHHHHHhccC--CHHH----HHHHHHHhcCC--
Confidence 89999999999999998865444334466777888888988877 334455554443 3332 34444555532
Q ss_pred CCCCcchhHHHHHHHHhccCC-ChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcH
Q psy4020 187 SKNVGNTILYETVLSIMDIKS-ESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDV 265 (530)
Q Consensus 187 ~~n~~~aV~~eai~~i~~l~~-~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~ 265 (530)
++.|..+|+..+-.+.. ++ .++..|...|.+.+..+|-.+...|.++. ++.. ...++..+.+++
T Consensus 172 ----~~~VR~~A~~aLg~~~~~~~----~~~~~L~~~L~D~~~~VR~~A~~aLg~~~--~~~a----v~~Li~~L~~~~- 236 (280)
T PRK09687 172 ----NGDVRNWAAFALNSNKYDNP----DIREAFVAMLQDKNEEIRIEAIIGLALRK--DKRV----LSVLIKELKKGT- 236 (280)
T ss_pred ----CHHHHHHHHHHHhcCCCCCH----HHHHHHHHHhcCCChHHHHHHHHHHHccC--ChhH----HHHHHHHHcCCc-
Confidence 56799999999988743 33 35667888888899999999999998864 3444 344667777766
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHHHHHHhh-hcCchhhhhhHHHHH
Q psy4020 266 SIRRRALELSFALVNSANVRSMMKELLIFLE-KSEPDFKAHCSSNIV 311 (530)
Q Consensus 266 ~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~-~~d~~~~~~~i~~I~ 311 (530)
++..+.+-+..+.+++ .+.-|.+.+. ..|.++++.++.++.
T Consensus 237 -~~~~a~~ALg~ig~~~----a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 237 -VGDLIIEAAGELGDKT----LLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhcCCHh----HHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 7889999999999974 4556666665 458888888877664
No 20
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.73 E-value=2.1e-06 Score=99.98 Aligned_cols=228 Identities=17% Similarity=0.178 Sum_probs=163.1
Q ss_pred HHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHh
Q psy4020 63 ITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLL 142 (530)
Q Consensus 63 ~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~l 142 (530)
.++.|..-|.|++|.+|-.|+..|+.+..++.. +.+.+.|.|+++.||..|+-++.++-...|. .+.+..+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~----~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-----~~~L~~~ 692 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPGFG----PALVAALGDGAAAVRRAAAEGLRELVEVLPP-----APALRDH 692 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHH----HHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-----hHHHHHH
Confidence 456778888999999999999999999987644 5566788999999999999999877443222 2355667
Q ss_pred cCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHh
Q psy4020 143 LSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRF 222 (530)
Q Consensus 143 L~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~l 222 (530)
|.+.|+.| +..+++.|..+...++. .+...+.. .+..|..+|++.+..+...+ .|..+
T Consensus 693 L~~~d~~V-R~~A~~aL~~~~~~~~~-------~l~~~L~D------~d~~VR~~Av~aL~~~~~~~--------~l~~~ 750 (897)
T PRK13800 693 LGSPDPVV-RAAALDVLRALRAGDAA-------LFAAALGD------PDHRVRIEAVRALVSVDDVE--------SVAGA 750 (897)
T ss_pred hcCCCHHH-HHHHHHHHHhhccCCHH-------HHHHHhcC------CCHHHHHHHHHHHhcccCcH--------HHHHH
Confidence 78888876 44566777766544432 22233332 26789999999988764432 34566
Q ss_pred ccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcCchh
Q psy4020 223 LLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDF 302 (530)
Q Consensus 223 L~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~ 302 (530)
+.+.++.+|..+...|..+....+..+ ..+..+++|+|+.+|..|+.-|-.+.++..+ ...+...+.+.|..+
T Consensus 751 l~D~~~~VR~~aa~aL~~~~~~~~~~~----~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~---~~~l~~aL~d~d~~V 823 (897)
T PRK13800 751 ATDENREVRIAVAKGLATLGAGGAPAG----DAVRALTGDPDPLVRAAALAALAELGCPPDD---VAAATAALRASAWQV 823 (897)
T ss_pred hcCCCHHHHHHHHHHHHHhccccchhH----HHHHHHhcCCCHHHHHHHHHHHHhcCCcchh---HHHHHHHhcCCChHH
Confidence 788889999999999888866544332 2344677888899999999999888775433 345667777778888
Q ss_pred hhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 303 KAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 303 ~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
|..++.+++.+. + ...++.|+.+|.+
T Consensus 824 R~~Aa~aL~~l~----~--~~a~~~L~~~L~D 849 (897)
T PRK13800 824 RQGAARALAGAA----A--DVAVPALVEALTD 849 (897)
T ss_pred HHHHHHHHHhcc----c--cchHHHHHHHhcC
Confidence 888888887643 1 2355778888876
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.55 E-value=7e-06 Score=95.66 Aligned_cols=258 Identities=15% Similarity=0.096 Sum_probs=156.7
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhc
Q psy4020 28 LECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMK 107 (530)
Q Consensus 28 ~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~ 107 (530)
...++.+.+++...|+.+=..+..+.+ ++ +...|.+-|.++++.||..|+.+|+.+....- -.+.+.+.|.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~--~~----~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---~~~~L~~~L~ 694 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP--PG----FGPALVAALGDGAAAVRRAAAEGLRELVEVLP---PAPALRDHLG 694 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc--hh----HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---chHHHHHHhc
Confidence 356677788888888888776666543 22 34566677788888888888888877632110 1245556777
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCC
Q psy4020 108 SSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETS 187 (530)
Q Consensus 108 ~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~ 187 (530)
+++|.||..|+.++..+-...+ ..+...|.|.|+.|- ...++.|..+.. + + .|...+..
T Consensus 695 ~~d~~VR~~A~~aL~~~~~~~~-------~~l~~~L~D~d~~VR-~~Av~aL~~~~~--~---~----~l~~~l~D---- 753 (897)
T PRK13800 695 SPDPVVRAAALDVLRALRAGDA-------ALFAAALGDPDHRVR-IEAVRALVSVDD--V---E----SVAGAATD---- 753 (897)
T ss_pred CCCHHHHHHHHHHHHhhccCCH-------HHHHHHhcCCCHHHH-HHHHHHHhcccC--c---H----HHHHHhcC----
Confidence 8888888888877776532222 123456778887762 333444444321 1 1 12222332
Q ss_pred CCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHH
Q psy4020 188 KNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSI 267 (530)
Q Consensus 188 ~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~I 267 (530)
.+..|..+++..+..+..... .....|..++.+.|+.+|..++..|..+... +... ..+...|.|+|..+
T Consensus 754 --~~~~VR~~aa~aL~~~~~~~~---~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-~~~~----~~l~~aL~d~d~~V 823 (897)
T PRK13800 754 --ENREVRIAVAKGLATLGAGGA---PAGDAVRALTGDPDPLVRAAALAALAELGCP-PDDV----AAATAALRASAWQV 823 (897)
T ss_pred --CCHHHHHHHHHHHHHhccccc---hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-chhH----HHHHHHhcCCChHH
Confidence 255677788877776654321 1244566777777788888888887776432 1111 22445677777778
Q ss_pred HHHHHHHHHhccChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 268 RRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 268 r~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
|..|++-|..+.+++-+ .-|...+.+.+.+.|..++.+++.+ .......+.|...+++
T Consensus 824 R~~Aa~aL~~l~~~~a~----~~L~~~L~D~~~~VR~~A~~aL~~~-----~~~~~a~~~L~~al~D 881 (897)
T PRK13800 824 RQGAARALAGAAADVAV----PALVEALTDPHLDVRKAAVLALTRW-----PGDPAARDALTTALTD 881 (897)
T ss_pred HHHHHHHHHhccccchH----HHHHHHhcCCCHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHhC
Confidence 88888888777654433 4555566677777788887777775 1122345556666665
No 22
>KOG1059|consensus
Probab=98.41 E-value=0.00021 Score=77.61 Aligned_cols=274 Identities=16% Similarity=0.097 Sum_probs=171.3
Q ss_pred HHHhhhhcCCCCCCCchHHHHHhhcCCCCchhHHHHHHHHhhcc--------------------------------CChh
Q psy4020 11 AVERDTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLD--------------------------------ERQD 58 (530)
Q Consensus 11 ~~~~~i~mlG~d~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~--------------------------------~~~e 58 (530)
++..| -+-++..+|..+||+.-..........++|...-.-.. ..||
T Consensus 62 yl~ml-g~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpd 140 (877)
T KOG1059|consen 62 YLEML-GVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPD 140 (877)
T ss_pred HHHHH-cchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHHHHHHHHHHHhccCccchhhheecccccccCch
Confidence 44555 56667777777777777777777777777654322111 1134
Q ss_pred HHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC--ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhH
Q psy4020 59 VHLLITNSLKNDLNSSTQFVVGLALCTLGAIA--SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFL 136 (530)
Q Consensus 59 ~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~--~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i 136 (530)
++.=..+-+..=|+|+-||+|--|+-.|-++- =||-.++.+|-++..|.|++|-|-.+|+--++-+.+++|.---.+.
T Consensus 141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LA 220 (877)
T KOG1059|consen 141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLA 220 (877)
T ss_pred hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccccc
Confidence 44444455555567899999999999988865 5899999999999999999999999999999999999997554555
Q ss_pred HHHHHhcCCCC---Ccc---------------hHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCC-CcchhHHH
Q psy4020 137 PATRLLLSDKN---HAI---------------HQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKN-VGNTILYE 197 (530)
Q Consensus 137 ~~l~~lL~d~n---~~V---------------~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n-~~~aV~~e 197 (530)
|.+..+|.+++ --+ +=-+++.=|..+...+.. ..-+++.+..++...-.+-. .+.+-+--
T Consensus 221 P~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~A-mSLlYECvNTVVa~s~s~g~~d~~asiqL 299 (877)
T KOG1059|consen 221 PLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVA-MSLLYECVNTVVAVSMSSGMSDHSASIQL 299 (877)
T ss_pred HHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHH-HHHHHHHHHHheeehhccCCCCcHHHHHH
Confidence 66666664431 111 112333333333322211 22445555555443111000 12222323
Q ss_pred HHH---HHhc----------------c-CCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccCh--HHHHHHHHH
Q psy4020 198 TVL---SIMD----------------I-KSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDT--SAVQRHRNT 255 (530)
Q Consensus 198 ai~---~i~~----------------l-~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p--~~~~~~~~~ 255 (530)
|+. .++. + ...+.....--+.+.+.|.+.|.+||.-||+.+..++.... ++++....
T Consensus 300 CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~- 378 (877)
T KOG1059|consen 300 CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMK- 378 (877)
T ss_pred HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHH-
Confidence 332 2221 1 11233333334557778889999999999999999987532 33333222
Q ss_pred HhhhccCCcHHHHHHHHHHHHhccChhhHHHHHH
Q psy4020 256 ILECLKDPDVSIRRRALELSFALVNSANVRSMMK 289 (530)
Q Consensus 256 i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~ 289 (530)
.....++...|..-+.-+..+|..+|..-|.+
T Consensus 379 --~~~~ae~t~yrdell~~II~iCS~snY~~Itd 410 (877)
T KOG1059|consen 379 --HVEKAEGTNYRDELLTRIISICSQSNYQYITD 410 (877)
T ss_pred --HHHhccchhHHHHHHHHHHHHhhhhhhhhhhh
Confidence 23345556899999999999999999987763
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.34 E-value=0.00065 Score=74.25 Aligned_cols=248 Identities=19% Similarity=0.156 Sum_probs=160.4
Q ss_pred HHHHhhcCCCCchhHHHHHHHHhhccCChhHHHH-----HHHHHHhhcCCCChhhhhHHHHHHhcCCC-hhhHHHH----
Q psy4020 29 ECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLL-----ITNSLKNDLNSSTQFVVGLALCTLGAIAS-PEMSRDL---- 98 (530)
Q Consensus 29 ~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L-----~~Nsl~kDL~s~n~~vr~lALr~l~~i~~-~el~~~l---- 98 (530)
.+...+.+++...|+++--.+..+.+.+.....+ +...+..-+.+++..+...|.+.|.++.. +.-.+.+
T Consensus 81 ~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~ 160 (503)
T PF10508_consen 81 FLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSN 160 (503)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcc
Confidence 3556788888888888777777766555432221 22344555678888888888888888863 3344445
Q ss_pred -HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHH
Q psy4020 99 -ASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEA 172 (530)
Q Consensus 99 -~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~ 172 (530)
...+.+++..+++.+|-+++-++.++.+..|+..+ .+++.+.+.|.+.|. .+|...+++|..++.. +...+-
T Consensus 161 ~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDi-Lvqlnalell~~La~~-~~g~~y 238 (503)
T PF10508_consen 161 LLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDI-LVQLNALELLSELAET-PHGLQY 238 (503)
T ss_pred hHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccH-HHHHHHHHHHHHHHcC-hhHHHH
Confidence 67777887777888898888888888888888765 367777777777443 4589999999998874 332221
Q ss_pred -----HHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC--ChHH---HHHHHHHHHHhccCCCchhHHHHHHHHHHHh
Q psy4020 173 -----MNDILAQVATNTETSKNVGNTILYETVLSIMDIKS--ESGL---RVLAVNILGRFLLNNDKNIRYVALNTLLRTV 242 (530)
Q Consensus 173 -----l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~--~~~l---~~~~v~~L~~lL~s~d~niry~aL~~L~~l~ 242 (530)
+.+.|...+.+.....-.+...+...++.+.++.. .+.. .......+-.++.+.|++.+-+|++++..+.
T Consensus 239 L~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 239 LEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIG 318 (503)
T ss_pred HHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh
Confidence 23334344433221110122344444455544432 2222 2344455666678899999999999999987
Q ss_pred ccC----------hHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhc
Q psy4020 243 YID----------TSAVQRHRNTILECLKDPDVSIRRRALELSFAL 278 (530)
Q Consensus 243 ~~~----------p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l 278 (530)
... +..+......++....+....+|.++|+-+..+
T Consensus 319 st~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 319 STVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred CCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 532 122333455666667777788999999988887
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.34 E-value=0.00048 Score=75.28 Aligned_cols=283 Identities=14% Similarity=0.152 Sum_probs=179.0
Q ss_pred HHHhhcCCCCchhHHHHHHHHhhccCC-h-hHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCC-hhh----H--HHHHH
Q psy4020 30 CLKLIASSRFTDKRIGYLGAMLLLDER-Q-DVHLLITNSLKNDLNSSTQFVVGLALCTLGAIAS-PEM----S--RDLAS 100 (530)
Q Consensus 30 vikl~~S~~~~~Krl~YL~l~~~~~~~-~-e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~-~el----~--~~l~~ 100 (530)
+..++++++-+.--+..-.+..++... + ++.-=....+++-|.|+++.||.+|++.++++.. ++. + ..+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 344556654444333333344444332 2 2233455778888999999999999999999753 222 1 56889
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhh-----HHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHH
Q psy4020 101 EVERLMKSSNAYIRKKAALCAYRIILKVPELMEIF-----LPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMND 175 (530)
Q Consensus 101 ~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~-----i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~ 175 (530)
.|..++.|++..|.+.|+-++.++.+..+. .+.+ ...+.+++...|. +..++++.++..++...++..+...+
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~~~L~~l~~~~~~-~vR~Rv~el~v~i~~~S~~~~~~~~~ 200 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPEG-LEQLFDSNLLSKLKSLMSQSSD-IVRCRVYELLVEIASHSPEAAEAVVN 200 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCchh-HHHHhCcchHHHHHHHHhccCH-HHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 999999999999999999999999875443 3333 7778888866444 44788999999998888877655544
Q ss_pred --HHHHHhhcccCCCCCcchhHHHHHHHHhccCCChH----HH-HHHHHHHHHhccC--CCc---hhHHHHH-HHHHHHh
Q psy4020 176 --ILAQVATNTETSKNVGNTILYETVLSIMDIKSESG----LR-VLAVNILGRFLLN--NDK---NIRYVAL-NTLLRTV 242 (530)
Q Consensus 176 --iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~----l~-~~~v~~L~~lL~s--~d~---niry~aL-~~L~~l~ 242 (530)
++..++..... ...-|-..|+.++..+...+. +. ..+++.|..++.+ .|| .+-..+. +-...+.
T Consensus 201 sgll~~ll~eL~~---dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la 277 (503)
T PF10508_consen 201 SGLLDLLLKELDS---DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA 277 (503)
T ss_pred ccHHHHHHHHhcC---ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence 55555543321 133466677777776654322 11 1345667777642 333 2222222 3334454
Q ss_pred ccChHHH-H---HHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHH------------HHHHHHhhhcCchhhhhh
Q psy4020 243 YIDTSAV-Q---RHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMM------------KELLIFLEKSEPDFKAHC 306 (530)
Q Consensus 243 ~~~p~~~-~---~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv------------~eL~~yl~~~d~~~~~~~ 306 (530)
..+|..+ . .....++.++.+.|..++..|+|.+..++...--..++ +.+..+......++|..+
T Consensus 278 ~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~ 357 (503)
T PF10508_consen 278 RVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRA 357 (503)
T ss_pred hcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHH
Confidence 4455433 2 22345566778889999999999999887554433333 333334444567889889
Q ss_pred HHHHHHHHHhh
Q psy4020 307 SSNIVLCAERF 317 (530)
Q Consensus 307 i~~I~~la~k~ 317 (530)
+.+++.+-..-
T Consensus 358 l~al~~il~~~ 368 (503)
T PF10508_consen 358 LHALASILTSG 368 (503)
T ss_pred HHHHHHHHhcC
Confidence 88888885433
No 25
>KOG1824|consensus
Probab=98.29 E-value=0.0001 Score=81.95 Aligned_cols=269 Identities=17% Similarity=0.212 Sum_probs=175.5
Q ss_pred hhhcCCCC-CCCchHHHHHhhcCCCCchh-----HHHHHHHHhhc----cCChhHHHHHHHHHHhhcCC--CChhhhhHH
Q psy4020 15 DTYLPKYP-AHFGQLECLKLIASSRFTDK-----RIGYLGAMLLL----DERQDVHLLITNSLKNDLNS--STQFVVGLA 82 (530)
Q Consensus 15 ~i~mlG~d-~sf~~~~vikl~~S~~~~~K-----rl~YL~l~~~~----~~~~e~~~L~~Nsl~kDL~s--~n~~vr~lA 82 (530)
+..+.+.+ .++.+.....+.+.+.++.- |=+|..+-.+. ..-|+..--.+-.+-+|+++ .|.-++-+|
T Consensus 760 f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa 839 (1233)
T KOG1824|consen 760 FQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFA 839 (1233)
T ss_pred HHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHH
Confidence 44444444 35667777778888876633 23333332221 11223333344567778874 577899999
Q ss_pred HHHHhcCCC---hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHH
Q psy4020 83 LCTLGAIAS---PEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLL 159 (530)
Q Consensus 83 Lr~l~~i~~---~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL 159 (530)
+-++|.++- ..-.+.+...+.+++++++..|+++|..|+..+---+ .+.|+|.+-+.+...-. -|--+|.-|
T Consensus 840 ~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn---l~~yLpfil~qi~sqpk--~QyLLLhSl 914 (1233)
T KOG1824|consen 840 LLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN---LPKYLPFILEQIESQPK--RQYLLLHSL 914 (1233)
T ss_pred HhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc---hHhHHHHHHHHHhcchH--hHHHHHHHH
Confidence 999998873 3335677788899999999999999999999885411 33455544444322110 244445444
Q ss_pred HhhcCC---C--hhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHH
Q psy4020 160 RILGKN---D--VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVA 234 (530)
Q Consensus 160 ~~l~~~---~--~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~a 234 (530)
..+..+ + ....+.++++|..-..+.+- -...|+-||.--++-..++. ...+|...+.+.+++.|-.+
T Consensus 915 kevi~~~svd~~~~~v~~IW~lL~k~cE~~ee---gtR~vvAECLGkL~l~epes-----LlpkL~~~~~S~a~~~rs~v 986 (1233)
T KOG1824|consen 915 KEVIVSASVDGLKPYVEKIWALLFKHCECAEE---GTRNVVAECLGKLVLIEPES-----LLPKLKLLLRSEASNTRSSV 986 (1233)
T ss_pred HHHHHHhccchhhhhHHHHHHHHHHhcccchh---hhHHHHHHHhhhHHhCChHH-----HHHHHHHHhcCCCcchhhhh
Confidence 433211 2 12345666666544433221 23569999998776554432 34567777889999999999
Q ss_pred HHHHHHHhccChH----HHHHHHHHHhhhccCCcHHHHHHHHHHHHhcc--ChhhHHHHHHHHHHHhh
Q psy4020 235 LNTLLRTVYIDTS----AVQRHRNTILECLKDPDVSIRRRALELSFALV--NSANVRSMMKELLIFLE 296 (530)
Q Consensus 235 L~~L~~l~~~~p~----~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~--n~~Nv~~Iv~eL~~yl~ 296 (530)
+..+.-.+..+|. .++++..+++..++|+|..+||.||-.+-.-+ .++=+.++++||+..+-
T Consensus 987 vsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly 1054 (1233)
T KOG1824|consen 987 VSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLY 1054 (1233)
T ss_pred hheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHH
Confidence 9988777776664 45677889999999999999999999988766 34557788888888774
No 26
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.12 E-value=0.00071 Score=82.80 Aligned_cols=295 Identities=13% Similarity=0.048 Sum_probs=199.3
Q ss_pred HHHhhcCCCCchhHHHHHHHHhhccCChhHHH-----HHHHHHHhhcCCCChhhhhHHHHHHhcCC--ChhhH-----HH
Q psy4020 30 CLKLIASSRFTDKRIGYLGAMLLLDERQDVHL-----LITNSLKNDLNSSTQFVVGLALCTLGAIA--SPEMS-----RD 97 (530)
Q Consensus 30 vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~-----L~~Nsl~kDL~s~n~~vr~lALr~l~~i~--~~el~-----~~ 97 (530)
.+.|+.+.+.+.+.=+-.++..+.+.+.|... ..++.|.+-|.++++.++-.|+++++++. +++.. ..
T Consensus 409 LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaG 488 (2102)
T PLN03200 409 LVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAG 488 (2102)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 34455666667777777777777766555322 26788889999999999999999999986 33322 24
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh---hHH--hhHHHHHHhcCCCCCcchHHHHHHHHHhhcC-CChhhHH
Q psy4020 98 LASEVERLMKSSNAYIRKKAALCAYRIILKVPE---LME--IFLPATRLLLSDKNHAIHQVKILKLLRILGK-NDVEASE 171 (530)
Q Consensus 98 l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~---~i~--~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~-~~~~~~~ 171 (530)
.++.+.++|.++++.+|+.|+-++..+....++ .+. ..++.+.++|.+.++.+ |-..+..|..+.. .+++...
T Consensus 489 aIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~-q~~Aa~AL~nLi~~~d~~~I~ 567 (2102)
T PLN03200 489 GIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKG-QEIAAKTLTKLVRTADAATIS 567 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH-HHHHHHHHHHHHhccchhHHH
Confidence 689999999999999999999999999874433 332 46888899998877655 4445555555432 3333222
Q ss_pred HHHHHHHHHhhcccCCCCCcchhHHHHHHH---HhccCCChHHH------HHHHHHHHHhccCCCchhHHHHHHHHHHHh
Q psy4020 172 AMNDILAQVATNTETSKNVGNTILYETVLS---IMDIKSESGLR------VLAVNILGRFLLNNDKNIRYVALNTLLRTV 242 (530)
Q Consensus 172 ~l~~iL~~~l~~~~~~~n~~~aV~~eai~~---i~~l~~~~~l~------~~~v~~L~~lL~s~d~niry~aL~~L~~l~ 242 (530)
.+. .++... +..+...++++ ++.+....+.. ..++..|..+|.+.+.++|--+...|..+.
T Consensus 568 ~Lv----~LLlsd------d~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~ 637 (2102)
T PLN03200 568 QLT----ALLLGD------LPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIF 637 (2102)
T ss_pred HHH----HHhcCC------ChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 222 223321 22233333443 44433332211 236788999999999999999999999998
Q ss_pred ccChHHH-----HHHHHHHhhhccCCcHHHHHHHHHHHHhcc---ChhhHHHH-----HHHHHHHhhhcCchhhhhhHHH
Q psy4020 243 YIDTSAV-----QRHRNTILECLKDPDVSIRRRALELSFALV---NSANVRSM-----MKELLIFLEKSEPDFKAHCSSN 309 (530)
Q Consensus 243 ~~~p~~~-----~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~---n~~Nv~~I-----v~eL~~yl~~~d~~~~~~~i~~ 309 (530)
..+++.. ..-..-++.+|++.+..+++.|---|.++. +++|...+ +.-|.+.++..|.+.+..+..+
T Consensus 638 a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~A 717 (2102)
T PLN03200 638 SSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCA 717 (2102)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHH
Confidence 8766532 233456677888888889999888877776 55554443 3557777877888999999999
Q ss_pred HHHHHHhhCC----CchhHHHHHHHHHHHh
Q psy4020 310 IVLCAERFAP----NKRWHLDTLLKVLVAN 335 (530)
Q Consensus 310 I~~la~k~~~----~~~~~vd~Ll~lL~~~ 335 (530)
+..++..-.. ...-.+..|+++|..+
T Consensus 718 LanLl~~~e~~~ei~~~~~I~~Lv~lLr~G 747 (2102)
T PLN03200 718 LANLLSDPEVAAEALAEDIILPLTRVLREG 747 (2102)
T ss_pred HHHHHcCchHHHHHHhcCcHHHHHHHHHhC
Confidence 9988763211 1123477888888874
No 27
>KOG0212|consensus
Probab=98.09 E-value=0.00072 Score=71.80 Aligned_cols=306 Identities=18% Similarity=0.175 Sum_probs=188.1
Q ss_pred HHHhhcCCCCchhHHHHHHHHhhc-----cCChhHHHHHHHHHHhhc-CCCCh-----hhhhHHHHHHhc-CCChhhHHH
Q psy4020 30 CLKLIASSRFTDKRIGYLGAMLLL-----DERQDVHLLITNSLKNDL-NSSTQ-----FVVGLALCTLGA-IASPEMSRD 97 (530)
Q Consensus 30 vikl~~S~~~~~Krl~YL~l~~~~-----~~~~e~~~L~~Nsl~kDL-~s~n~-----~vr~lALr~l~~-i~~~el~~~ 97 (530)
|.+-++.+-|+-||.+-+-+.-+. +.+.+-+-=++.-+-+|. .+++. ...|+|..++|- ..+....+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 444455555665665555443322 334455556677777776 33332 456777776553 223346788
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH----hhHHHHHHhcCCCCCcc--h--------------------
Q psy4020 98 LASEVERLMKSSNAYIRKKAALCAYRIILKVPELME----IFLPATRLLLSDKNHAI--H-------------------- 151 (530)
Q Consensus 98 l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~----~~i~~l~~lL~d~n~~V--~-------------------- 151 (530)
+.++|..|+.|++.-||=-|+-++|.+.+..-.-+- ...+.+-.+..|.+..| +
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFs 164 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFS 164 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccC
Confidence 999999999999999999999999998876543332 23333444445666555 0
Q ss_pred HHHHHHHHH-hhcCCChhhH----------------------HHHHHHHHHHhhcccCCCCCcchhHHHHHHHHh----c
Q psy4020 152 QVKILKLLR-ILGKNDVEAS----------------------EAMNDILAQVATNTETSKNVGNTILYETVLSIM----D 204 (530)
Q Consensus 152 qi~iL~lL~-~l~~~~~~~~----------------------~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~----~ 204 (530)
--.++.+|+ ++...+|... ..+.+.|...+.. .+..|.--|=.++- +
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD------~s~eVr~~~~t~l~~fL~e 238 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSD------SSDEVRTLTDTLLSEFLAE 238 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcC------CcHHHHHHHHHHHHHHHHH
Confidence 011222222 1111122211 1223333333331 13445433333222 2
Q ss_pred cCCChHH--HHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHH----HHHHHhhhccCCcH-HHHHHHHH---H
Q psy4020 205 IKSESGL--RVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQR----HRNTILECLKDPDV-SIRRRALE---L 274 (530)
Q Consensus 205 l~~~~~l--~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~----~~~~i~~~l~d~d~-~Ir~~aL~---l 274 (530)
+.++|.- ....++.++.-+.++++.+|-.||..+.+++...|..+-. ....++.|+.|.+. +|+..|.. .
T Consensus 239 I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~ 318 (675)
T KOG0212|consen 239 IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGL 318 (675)
T ss_pred HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHH
Confidence 3333322 3356677777788999999999999999999988765543 34557789888877 46655443 4
Q ss_pred HHhccChhhHH------HHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCC----CchhHHHHHHHHHHHhhhhhhc
Q psy4020 275 SFALVNSANVR------SMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAP----NKRWHLDTLLKVLVANLLGFSN 341 (530)
Q Consensus 275 l~~l~n~~Nv~------~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~----~~~~~vd~Ll~lL~~~~~~~v~ 341 (530)
+.+++.+.--+ .|++-|.+|+.+...+-|..+.+-|.-+-.|+|. -.+...++|++-|+++-..+|.
T Consensus 319 l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl 395 (675)
T KOG0212|consen 319 LLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVL 395 (675)
T ss_pred HHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHH
Confidence 66666665544 8999999999988888999999999999988874 3345667777777774433333
No 28
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.07 E-value=0.0031 Score=77.48 Aligned_cols=279 Identities=14% Similarity=0.079 Sum_probs=182.5
Q ss_pred chHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHH-----HHHHHHhhcCCCChhhhhHHHHHHhcCC---ChhhHHH
Q psy4020 26 GQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLL-----ITNSLKNDLNSSTQFVVGLALCTLGAIA---SPEMSRD 97 (530)
Q Consensus 26 ~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L-----~~Nsl~kDL~s~n~~vr~lALr~l~~i~---~~el~~~ 97 (530)
+.+..++|+.+++...|+-+--++..+....++...+ ++..|.+=|++.++..+..|+.+|+++. +++.+
T Consensus 489 aIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I-- 566 (2102)
T PLN03200 489 GIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATI-- 566 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHH--
Confidence 4455677777777777777665666665433332211 2445555666777777777777777763 33322
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh--hH------HhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhh
Q psy4020 98 LASEVERLMKSSNAYIRKKAALCAYRIILKVPE--LM------EIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEA 169 (530)
Q Consensus 98 l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~--~i------~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~ 169 (530)
+++..++.+.++.++..|+-++.++...... .. ...++.+.++|...++.+ +-.....+..|+...++.
T Consensus 567 --~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~i-kk~Aa~iLsnL~a~~~d~ 643 (2102)
T PLN03200 567 --SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEET-QEKAASVLADIFSSRQDL 643 (2102)
T ss_pred --HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHH-HHHHHHHHHHHhcCChHH
Confidence 4455667777777777777777666553221 11 246778888887776654 444456666666665554
Q ss_pred HHHHH-----HHHHHHhhcccCCCCCcchhHHHHHHHHhccCC--ChH----HH-HHHHHHHHHhccCCCchhHHHHHHH
Q psy4020 170 SEAMN-----DILAQVATNTETSKNVGNTILYETVLSIMDIKS--ESG----LR-VLAVNILGRFLLNNDKNIRYVALNT 237 (530)
Q Consensus 170 ~~~l~-----~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~--~~~----l~-~~~v~~L~~lL~s~d~niry~aL~~ 237 (530)
.+.+. ..+-.++++ .+..+..||+.++.++.. +++ +. ..++.+|..+|.++|..++-.++..
T Consensus 644 ~~avv~agaIpPLV~LLss------~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~A 717 (2102)
T PLN03200 644 CESLATDEIINPCIKLLTN------NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCA 717 (2102)
T ss_pred HHHHHHcCCHHHHHHHHhc------CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHH
Confidence 33322 122223332 256799999999887753 222 11 2367889999999999999999999
Q ss_pred HHHHhccChH---HH-HHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHH----------HHHHHHHhhhcCchhh
Q psy4020 238 LLRTVYIDTS---AV-QRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSM----------MKELLIFLEKSEPDFK 303 (530)
Q Consensus 238 L~~l~~~~p~---~~-~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~I----------v~eL~~yl~~~d~~~~ 303 (530)
|..++..... +. ......+...+++.+...|+.|.-.|..||....+++. +.-|..+++..|.+-.
T Consensus 718 LanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~ 797 (2102)
T PLN03200 718 LANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSS 797 (2102)
T ss_pred HHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchh
Confidence 9999875422 22 23356677888998999999999999999977776663 4566667777776655
Q ss_pred h--hhHHHHHHHHH
Q psy4020 304 A--HCSSNIVLCAE 315 (530)
Q Consensus 304 ~--~~i~~I~~la~ 315 (530)
. ++...+..++.
T Consensus 798 ~~~~al~~l~~l~~ 811 (2102)
T PLN03200 798 ATSEALEALALLAR 811 (2102)
T ss_pred hHHHHHHHHHHHHh
Confidence 4 48888888886
No 29
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.03 E-value=0.00017 Score=67.65 Aligned_cols=105 Identities=18% Similarity=0.258 Sum_probs=77.0
Q ss_pred ChhhhhHHHHHHh--cCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHh-hHHHHHHhcCCCCCcch
Q psy4020 75 TQFVVGLALCTLG--AIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEI-FLPATRLLLSDKNHAIH 151 (530)
Q Consensus 75 n~~vr~lALr~l~--~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~-~i~~l~~lL~d~n~~V~ 151 (530)
||.+|..|+.++| .++-|.+++...+.+.++|.|++|+|||.|+.++.++...+.-.++. ++..+..++.|.|+.|.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 6889999999999 56789999999999999999999999999999999999876554443 33666677899999883
Q ss_pred HHHHHHHHHhhcCC-Chh-hHHHHHHHHHHH
Q psy4020 152 QVKILKLLRILGKN-DVE-ASEAMNDILAQV 180 (530)
Q Consensus 152 qi~iL~lL~~l~~~-~~~-~~~~l~~iL~~~ 180 (530)
... ..+|..+... +|+ ....+.+++..+
T Consensus 81 ~~A-~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 81 SLA-RSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHH-HHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 322 2333333322 333 344455555543
No 30
>KOG2171|consensus
Probab=98.02 E-value=0.00096 Score=76.24 Aligned_cols=253 Identities=13% Similarity=0.114 Sum_probs=171.1
Q ss_pred hhhhhHHHHHHh-cCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHh----hHHHHHHhcCCCCCcc
Q psy4020 76 QFVVGLALCTLG-AIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEI----FLPATRLLLSDKNHAI 150 (530)
Q Consensus 76 ~~vr~lALr~l~-~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~----~i~~l~~lL~d~n~~V 150 (530)
..+---||..++ +++-..+++.+++.+...+.+.+++-|++|++|+.-+-.=.++.++. .++.+...|+|.+|-|
T Consensus 326 ~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprV 405 (1075)
T KOG2171|consen 326 YRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRV 405 (1075)
T ss_pred HHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 333344555554 46667888999999999999999999999999999999888888764 5556667789988877
Q ss_pred hHHHHHHHHHhhcCC-ChhhH----HHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC--Ch----HHHHHHHH-H
Q psy4020 151 HQVKILKLLRILGKN-DVEAS----EAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKS--ES----GLRVLAVN-I 218 (530)
Q Consensus 151 ~qi~iL~lL~~l~~~-~~~~~----~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~--~~----~l~~~~v~-~ 218 (530)
+...+..+..+... -|... +.+...|...+..++ +.-|--.|+.++.++.. .. .......+ .
T Consensus 406 -r~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~-----~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~ 479 (1075)
T KOG2171|consen 406 -RYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ-----NVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKK 479 (1075)
T ss_pred -HHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC-----chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 44445555544322 23332 333444444444442 34566666766665532 11 12223334 5
Q ss_pred HHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhcc--------CCcHHHHHHHHHHHHhccCh---hhHHHH
Q psy4020 219 LGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLK--------DPDVSIRRRALELSFALVNS---ANVRSM 287 (530)
Q Consensus 219 L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~--------d~d~~Ir~~aL~ll~~l~n~---~Nv~~I 287 (530)
+..++.++.+.+|-.++.+|..++....+.|.+|...++.+|+ ++....|.+.++.+..++.. +-....
T Consensus 480 l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~ 559 (1075)
T KOG2171|consen 480 LLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPL 559 (1075)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHh
Confidence 6666678899999999999999988776777777666655443 34567888888888776543 334444
Q ss_pred HHHHHHHhhh-------cCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 288 MKELLIFLEK-------SEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 288 v~eL~~yl~~-------~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
..|+.+-+.. .|+-.+...+..++++|.-+.+++.-|..+++.-+-.
T Consensus 560 a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ 613 (1075)
T KOG2171|consen 560 AEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLK 613 (1075)
T ss_pred HHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHH
Confidence 4555554422 3455788899999999999999888888877776554
No 31
>KOG1058|consensus
Probab=97.99 E-value=0.00045 Score=75.38 Aligned_cols=275 Identities=16% Similarity=0.221 Sum_probs=168.7
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHH------HHHHHHHhhcCC
Q psy4020 92 PEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQV------KILKLLRILGKN 165 (530)
Q Consensus 92 ~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi------~iL~lL~~l~~~ 165 (530)
+||+ -+...+.+-|.|+|.|||-...-=++|+ +.||+++.+.|.+.++|..+++-|--- .|.+.+..+.+.
T Consensus 95 ~EMI-Lvcna~RkDLQHPNEyiRG~TLRFLckL--kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pD 171 (948)
T KOG1058|consen 95 HEMI-LVCNAYRKDLQHPNEYIRGSTLRFLCKL--KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPD 171 (948)
T ss_pred HHHH-HHHHHHhhhccCchHhhcchhhhhhhhc--CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCC
Confidence 4444 3678899999999999999887767666 789999999999999999988877211 222333334444
Q ss_pred ChhhHHHH-------------------------HHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHH
Q psy4020 166 DVEASEAM-------------------------NDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILG 220 (530)
Q Consensus 166 ~~~~~~~l-------------------------~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~ 220 (530)
-|+..+.+ .+.+...+...++-...-..|+.|-++-.+. .+|....+-+..+.
T Consensus 172 apeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~--~~p~~~~~~i~~i~ 249 (948)
T KOG1058|consen 172 APELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCL--ANPAEKARYIRCIY 249 (948)
T ss_pred hHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHh--cCHHHhhHHHHHHH
Confidence 44322111 1111111111110000112466666665544 45566667788888
Q ss_pred HhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhc-cCCcHHHHHHHHHHHHhcc--ChhhHHHHHHHHHHHhhh
Q psy4020 221 RFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECL-KDPDVSIRRRALELSFALV--NSANVRSMMKELLIFLEK 297 (530)
Q Consensus 221 ~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l-~d~d~~Ir~~aL~ll~~l~--n~~Nv~~Iv~eL~~yl~~ 297 (530)
.+|.++++.++|-+--+|..+. .+|.+++.-.+.++.|+ +.+|-.+|.--|+.|..+. +++-.++++-.++..+..
T Consensus 250 ~lL~stssaV~fEaa~tlv~lS-~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss 328 (948)
T KOG1058|consen 250 NLLSSTSSAVIFEAAGTLVTLS-NDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSS 328 (948)
T ss_pred HHHhcCCchhhhhhcceEEEcc-CCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCc
Confidence 9999889999999888876663 57999988888888875 4667789999999999887 333334444444555666
Q ss_pred cCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHHhhhhhhcc----hhhhHHHHHH-HHHHhhcCcchHHHHH-hhc
Q psy4020 298 SEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNR----ALRDQRRALE-LSFALVNSANVRSMMK-ELL 371 (530)
Q Consensus 298 ~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~~~~~~v~~----a~eiq~~a~e-~~~ll~~~p~~r~~il-e~l 371 (530)
.|-++|++.+.-...++..- +. .-++.+|..++..-..+ +-+++|--+. +..--.++|+.-+.++ ..|
T Consensus 329 ~dldvr~Ktldi~ldLvssr--Nv----ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll 402 (948)
T KOG1058|consen 329 PDLDVRSKTLDIALDLVSSR--NV----EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLL 402 (948)
T ss_pred ccccHHHHHHHHHHhhhhhc--cH----HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHH
Confidence 78899998877666665432 32 33445555433221111 1122221111 1222247888877777 444
Q ss_pred cCCCCCC
Q psy4020 372 IFLEKSE 378 (530)
Q Consensus 372 ~~l~~~~ 378 (530)
-|+-+..
T Consensus 403 ~fisD~N 409 (948)
T KOG1058|consen 403 DFISDSN 409 (948)
T ss_pred HHhccCC
Confidence 5776654
No 32
>KOG0166|consensus
Probab=97.94 E-value=0.0008 Score=71.95 Aligned_cols=283 Identities=15% Similarity=0.112 Sum_probs=181.3
Q ss_pred HHHHHhhcCCCCchhHHHHHHH-HhhccC-ChhHHHH----HHHHHHhhcC-CCChhhh---hHHHHHHhcCCChhh---
Q psy4020 28 LECLKLIASSRFTDKRIGYLGA-MLLLDE-RQDVHLL----ITNSLKNDLN-SSTQFVV---GLALCTLGAIASPEM--- 94 (530)
Q Consensus 28 ~~vikl~~S~~~~~Krl~YL~l-~~~~~~-~~e~~~L----~~Nsl~kDL~-s~n~~vr---~lALr~l~~i~~~el--- 94 (530)
...+..+-|++...+.-+--.+ ..+..+ +|..... ++..+-.-|. +.+|.++ +.||+-+++..+...
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 3455666777766643332233 333322 3433222 2233334443 4446555 455555555333222
Q ss_pred HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCC-h
Q psy4020 95 SR-DLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSDKNHAIHQVKILKLLRILGKND-V 167 (530)
Q Consensus 95 ~~-~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~-~ 167 (530)
++ ..++...+++.++++.||..|+-|+..+....|+.-. ..++.+..++...+.--+--.+.-.|..+|+.. |
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 22 2456778999999999999999999999988776543 356677777777665222223344556666542 2
Q ss_pred ----hhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCC-hHHHHH-----HHHHHHHhccCCCchhHHHHHHH
Q psy4020 168 ----EASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSE-SGLRVL-----AVNILGRFLLNNDKNIRYVALNT 237 (530)
Q Consensus 168 ----~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~-~~l~~~-----~v~~L~~lL~s~d~niry~aL~~ 237 (530)
+....++..|..++.++ +.-|+-.|+.++.+++.. ++..+. .+..|..+|.+.+++++--+|+.
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~------D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRa 302 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHST------DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRA 302 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhh
Confidence 23345666777777654 667999999999988742 333332 34678899999999999999999
Q ss_pred HHHHhccChH---HH--HHHHHHHhhhcc-CCcHHHHHHHHHHHHhccC--hhhHHH-----HHHHHHHHhhhcCchhhh
Q psy4020 238 LLRTVYIDTS---AV--QRHRNTILECLK-DPDVSIRRRALELSFALVN--SANVRS-----MMKELLIFLEKSEPDFKA 304 (530)
Q Consensus 238 L~~l~~~~p~---~~--~~~~~~i~~~l~-d~d~~Ir~~aL~ll~~l~n--~~Nv~~-----Iv~eL~~yl~~~d~~~~~ 304 (530)
+..|+.-.-. .+ ..-...+..++. ++...||+.|.=++.+++. .+-++. ++..|..-+...|.+.|+
T Consensus 303 iGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rK 382 (514)
T KOG0166|consen 303 IGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRK 382 (514)
T ss_pred ccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHH
Confidence 9998764432 22 223445556666 4555699999999998763 333333 347788888888988999
Q ss_pred hhHHHHHHHHHh
Q psy4020 305 HCSSNIVLCAER 316 (530)
Q Consensus 305 ~~i~~I~~la~k 316 (530)
+++-+|+.++..
T Consensus 383 EAawaIsN~ts~ 394 (514)
T KOG0166|consen 383 EAAWAISNLTSS 394 (514)
T ss_pred HHHHHHHhhccc
Confidence 999999998864
No 33
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.84 E-value=0.00028 Score=66.24 Aligned_cols=143 Identities=18% Similarity=0.229 Sum_probs=106.6
Q ss_pred CchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhH---HHHHHHHHHHhhhcCchhh
Q psy4020 227 DKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANV---RSMMKELLIFLEKSEPDFK 303 (530)
Q Consensus 227 d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv---~~Iv~eL~~yl~~~d~~~~ 303 (530)
+|.+|--++..+..++.++|..+++|...++.||.|+++.+|+.|+-++..|..++-+ ..++.+++..+.+.|+++|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 4778999999999999999999999999999999999999999999999999876433 3444677777788899999
Q ss_pred hhhHHHHHHHHHhhCCCchhHHHHHHHHHHHhhhhhhc----chhhhHHHHHHHHHHhhcCc--chHHHHHhhcc
Q psy4020 304 AHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSN----RALRDQRRALELSFALVNSA--NVRSMMKELLI 372 (530)
Q Consensus 304 ~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~~~~~~v~----~a~eiq~~a~e~~~ll~~~p--~~r~~ile~l~ 372 (530)
..+...+..+..+..+. -..+.+.+++.. +...-+ +....++|...+++++..-+ ..++.+.++++
T Consensus 81 ~~A~~~~~e~~~~~~~~--~i~~~~~e~i~~-l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~ 152 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPN--IIYNNFPELISS-LNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLC 152 (178)
T ss_pred HHHHHHHHHHHHhccch--HHHHHHHHHHHH-HhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 99999999998884222 345556666654 211100 01234455566777776554 56788888887
No 34
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.80 E-value=0.0015 Score=69.42 Aligned_cols=260 Identities=16% Similarity=0.147 Sum_probs=154.2
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC----ChhhHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy4020 44 IGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA----SPEMSRDLASEVERLMKSSNAYIRKKAAL 119 (530)
Q Consensus 44 l~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~----~~el~~~l~~~V~~~l~~~~~yVRK~A~l 119 (530)
++--|...+.+++++...-....+.-=|.+.-+.+.--|-|.+|.+. .++..+..+..++..|.++..-.|=.|+-
T Consensus 246 ~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~R 325 (898)
T COG5240 246 LLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMR 325 (898)
T ss_pred ehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 33445556667777766555555554567777888877888888754 46667777778888888888888888888
Q ss_pred HHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHH----------------------------------HHHHHHHhhcCC
Q psy4020 120 CAYRIILKVPELMEIFLPATRLLLSDKNHAIHQV----------------------------------KILKLLRILGKN 165 (530)
Q Consensus 120 a~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi----------------------------------~iL~lL~~l~~~ 165 (530)
.+-++...+|+.+.-+-+.+.+|++|.|-.+... .+++.++.++-.
T Consensus 326 iln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~ 405 (898)
T COG5240 326 ILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLL 405 (898)
T ss_pred HHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhh
Confidence 8888888999998878888888888887665222 223333333333
Q ss_pred ChhhHHHHHHHHHHHhhcccCCCCCcch---hHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHh
Q psy4020 166 DVEASEAMNDILAQVATNTETSKNVGNT---ILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTV 242 (530)
Q Consensus 166 ~~~~~~~l~~iL~~~l~~~~~~~n~~~a---V~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~ 242 (530)
-|+-...++++|..++-.. . +.- -..+|+.-++. ..|+..+.+...|+.|+.+ -+..-++++.|..+.
T Consensus 406 Fp~k~~s~l~FL~~~L~~e-G----g~eFK~~~Vdaisd~~~--~~p~skEraLe~LC~fIED--cey~~I~vrIL~iLG 476 (898)
T COG5240 406 FPSKKLSYLDFLGSSLLQE-G----GLEFKKYMVDAISDAME--NDPDSKERALEVLCTFIED--CEYHQITVRILGILG 476 (898)
T ss_pred CcHHHHHHHHHHHHHHHhc-c----cchHHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHhh--cchhHHHHHHHHHhc
Confidence 3333344445544443220 0 111 11122222222 2344456677777777753 334455666666665
Q ss_pred ccChHHH--HHHHHHHhhhccCCcHHHHHHHHHHHHhc----cChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHH
Q psy4020 243 YIDTSAV--QRHRNTILECLKDPDVSIRRRALELSFAL----VNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVL 312 (530)
Q Consensus 243 ~~~p~~~--~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l----~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~ 312 (530)
...|..= ..|..+|.+.+-=.+.-||.-|+..|.+. -+.---+.+..-|..++.+.|++.|..+.-.+..
T Consensus 477 ~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~ 552 (898)
T COG5240 477 REGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRN 552 (898)
T ss_pred ccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHh
Confidence 5443221 12333344332223456888888888443 3344445555667778888888888776555443
No 35
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.78 E-value=0.0016 Score=67.13 Aligned_cols=218 Identities=19% Similarity=0.141 Sum_probs=140.9
Q ss_pred chHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHH
Q psy4020 26 GQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERL 105 (530)
Q Consensus 26 ~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~ 105 (530)
..-.+.+++.+++...|.-+..++..+.. .-++..+.+-+.+.++.+|..|...++.+.+++-++.+...+..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~- 116 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGS------EEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN- 116 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhch------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc-
Confidence 34457778888888888777666544422 13567888888999999999999999999999777766665544
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhccc
Q psy4020 106 MKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTE 185 (530)
Q Consensus 106 l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~ 185 (530)
|.+.+||++|+.++.++... ..+..+.+.+.|.++++ +.... ++.
T Consensus 117 --d~~~~vR~~aa~aL~~~~~~------~a~~~l~~~l~~~~~~~-a~~~~---------~~~----------------- 161 (335)
T COG1413 117 --DENEGVRAAAARALGKLGDE------RALDPLLEALQDEDSGS-AAAAL---------DAA----------------- 161 (335)
T ss_pred --CCcHhHHHHHHHHHHhcCch------hhhHHHHHHhccchhhh-hhhhc---------cch-----------------
Confidence 88999999999999887542 22555666677766554 11111 000
Q ss_pred CCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcH
Q psy4020 186 TSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDV 265 (530)
Q Consensus 186 ~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~ 265 (530)
-..+.+.++..+..+... .....+..++.+.+..+|..+...|..+....+.. ...+...+.+++.
T Consensus 162 -----~~~~r~~a~~~l~~~~~~-----~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~----~~~l~~~~~~~~~ 227 (335)
T COG1413 162 -----LLDVRAAAAEALGELGDP-----EAIPLLIELLEDEDADVRRAAASALGQLGSENVEA----ADLLVKALSDESL 227 (335)
T ss_pred -----HHHHHHHHHHHHHHcCCh-----hhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhH----HHHHHHHhcCCCH
Confidence 002444444444444332 23456667777777788888888888776543121 2334556778888
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcCchhh
Q psy4020 266 SIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFK 303 (530)
Q Consensus 266 ~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~ 303 (530)
.+|.+++..+..+..++.... +..++.+.+...+
T Consensus 228 ~vr~~~~~~l~~~~~~~~~~~----l~~~l~~~~~~~~ 261 (335)
T COG1413 228 EVRKAALLALGEIGDEEAVDA----LAKALEDEDVILA 261 (335)
T ss_pred HHHHHHHHHhcccCcchhHHH----HHHHHhccchHHH
Confidence 888888888888777666653 4444444444333
No 36
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.78 E-value=0.016 Score=65.11 Aligned_cols=284 Identities=18% Similarity=0.152 Sum_probs=176.8
Q ss_pred HHHHHhhcCCCChhhhhHHHHHHhcCCC-----hhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH----
Q psy4020 64 TNSLKNDLNSSTQFVVGLALCTLGAIAS-----PEMS-RDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME---- 133 (530)
Q Consensus 64 ~Nsl~kDL~s~n~~vr~lALr~l~~i~~-----~el~-~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~---- 133 (530)
+..|.+=|.+.|+.+..+|+++|.++.. .+|. ..+++.+.+++.+++.-++..|+-.++.+ ..+++.-.
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NL-Sfd~~~R~~mV~ 370 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNL-SFDPELRSQMVS 370 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHh-CcCHHHHHHHHH
Confidence 3445555678899999999999999883 3444 34788899999999999999888877776 34565433
Q ss_pred -hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHH-----HHHHHHH-HhhcccCCCCCcchhHHHHHHHHhccC
Q psy4020 134 -IFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEA-----MNDILAQ-VATNTETSKNVGNTILYETVLSIMDIK 206 (530)
Q Consensus 134 -~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~-----l~~iL~~-~l~~~~~~~n~~~aV~~eai~~i~~l~ 206 (530)
.++|.+..+|.+.+.. -..+++|..++..+.. ... ....+.+ ++.+. +..+-.|.+-+.++++
T Consensus 371 ~GlIPkLv~LL~d~~~~---~val~iLy~LS~dd~~-r~~f~~TdcIp~L~~~Ll~~~------~~~v~~eliaL~iNLa 440 (708)
T PF05804_consen 371 LGLIPKLVELLKDPNFR---EVALKILYNLSMDDEA-RSMFAYTDCIPQLMQMLLENS------EEEVQLELIALLINLA 440 (708)
T ss_pred CCCcHHHHHHhCCCchH---HHHHHHHHHhccCHhh-HHHHhhcchHHHHHHHHHhCC------CccccHHHHHHHHHHh
Confidence 5789999999887653 2356666666654322 111 1222222 23322 3456667777777777
Q ss_pred CChHHHHHHHH--HHHHh----ccCCCchhHHHHHHHHHHHhccCh---HHHHHHHHHHhhhccC-CcHHHHHHHHHHHH
Q psy4020 207 SESGLRVLAVN--ILGRF----LLNNDKNIRYVALNTLLRTVYIDT---SAVQRHRNTILECLKD-PDVSIRRRALELSF 276 (530)
Q Consensus 207 ~~~~l~~~~v~--~L~~l----L~s~d~niry~aL~~L~~l~~~~p---~~~~~~~~~i~~~l~d-~d~~Ir~~aL~ll~ 276 (530)
.++...+..+. .|..+ +..+|+ +.+..+..+.++.+ ..|.++...+..++.+ ++.+..-.+|-+|.
T Consensus 441 ~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLa 516 (708)
T PF05804_consen 441 LNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILA 516 (708)
T ss_pred cCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 66543332221 12222 234443 34455555665553 3567788888777664 46788888999998
Q ss_pred hccCh-hhHHHHHHH--HHHHhhh------cCchhhhhhHHHHHHHHHhhCCCc-----hhHHHHHHHHHHHhhhhhhcc
Q psy4020 277 ALVNS-ANVRSMMKE--LLIFLEK------SEPDFKAHCSSNIVLCAERFAPNK-----RWHLDTLLKVLVANLLGFSNR 342 (530)
Q Consensus 277 ~l~n~-~Nv~~Iv~e--L~~yl~~------~d~~~~~~~i~~I~~la~k~~~~~-----~~~vd~Ll~lL~~~~~~~v~~ 342 (530)
++.-+ -++..++++ |..|+.+ +++++.-++|.-+|.+|.. +..+ .-.++.++++|...- +
T Consensus 517 NL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-~~~A~lL~~sgli~~Li~LL~~kq-----e 590 (708)
T PF05804_consen 517 NLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-PECAPLLAKSGLIPTLIELLNAKQ-----E 590 (708)
T ss_pred hcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-HHHHHHHHhCChHHHHHHHHHhhC-----c
Confidence 88744 488888865 6677754 3567888888888877631 1122 235788888887632 1
Q ss_pred hhhh-HHHHHHHHHHhhcCcchHHHHHh
Q psy4020 343 ALRD-QRRALELSFALVNSANVRSMMKE 369 (530)
Q Consensus 343 a~ei-q~~a~e~~~ll~~~p~~r~~ile 369 (530)
-.|+ -|....|..++ .++.-|+.+++
T Consensus 591 DdE~VlQil~~f~~ll-~h~~tr~~ll~ 617 (708)
T PF05804_consen 591 DDEIVLQILYVFYQLL-FHEETREVLLK 617 (708)
T ss_pred hHHHHHHHHHHHHHHH-cChHHHHHHHh
Confidence 1232 23334444444 56777776664
No 37
>KOG2171|consensus
Probab=97.74 E-value=0.017 Score=66.31 Aligned_cols=114 Identities=17% Similarity=0.216 Sum_probs=70.1
Q ss_pred HhccCCCchhHHHHHHHHHHHhccChHHH-HHHHHHHhh----hccCC-cHHHHHHHHHHHHhc---cChhhHHHHHHHH
Q psy4020 221 RFLLNNDKNIRYVALNTLLRTVYIDTSAV-QRHRNTILE----CLKDP-DVSIRRRALELSFAL---VNSANVRSMMKEL 291 (530)
Q Consensus 221 ~lL~s~d~niry~aL~~L~~l~~~~p~~~-~~~~~~i~~----~l~d~-d~~Ir~~aL~ll~~l---~n~~Nv~~Iv~eL 291 (530)
.+|.+++|-+||.|+..+.++....+.-+ +.|...+.. .+++. .+-+...|-.-+.+. |..+-+...++.|
T Consensus 396 ~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~l 475 (1075)
T KOG2171|consen 396 NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGL 475 (1075)
T ss_pred hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34567888899999999999987654334 444444432 22332 234554444444432 3334444444444
Q ss_pred HH----Hhh-hcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 292 LI----FLE-KSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 292 ~~----yl~-~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
++ .+. +..+..+..++.+|+.+|.--...+.-|.|.++.+|..
T Consensus 476 m~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~ 523 (1075)
T KOG2171|consen 476 MEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKN 523 (1075)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 44 222 23566788899999999876656666788999988885
No 38
>KOG2259|consensus
Probab=97.67 E-value=0.01 Score=64.39 Aligned_cols=274 Identities=13% Similarity=0.116 Sum_probs=161.8
Q ss_pred hhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChh-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhh
Q psy4020 57 QDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPE-----MSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPEL 131 (530)
Q Consensus 57 ~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~e-----l~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~ 131 (530)
+.-..+..+.=++-.+......|-.++.+...++.+. -.+.+...+.....+.++-||+.|+-+++.+.. --.+
T Consensus 153 ~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL 231 (823)
T KOG2259|consen 153 DIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GFKL 231 (823)
T ss_pred hhHHHHHhhhHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cccc
Confidence 3334444444444444444456667777777666422 235556667788889999999999999988866 3333
Q ss_pred HHhhHHHHHHhcCCCCCcc--hHHHHHHHHHhhcC--CChh-hHHHHHH-HHHHHhhcccCCCCCcchhHHHHHHHHhcc
Q psy4020 132 MEIFLPATRLLLSDKNHAI--HQVKILKLLRILGK--NDVE-ASEAMND-ILAQVATNTETSKNVGNTILYETVLSIMDI 205 (530)
Q Consensus 132 i~~~i~~l~~lL~d~n~~V--~qi~iL~lL~~l~~--~~~~-~~~~l~~-iL~~~l~~~~~~~n~~~aV~~eai~~i~~l 205 (530)
-........++++|.+..| ..++++-+....++ .+.+ ..+++.+ ...++..-. +..+-.|..||++.+-.+
T Consensus 232 ~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v---~D~sl~VRV~AaK~lG~~ 308 (823)
T KOG2259|consen 232 SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAV---RDRSLSVRVEAAKALGEF 308 (823)
T ss_pred cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHH---hcCceeeeehHHHHhchH
Confidence 4456777888899998888 34444444444442 1111 1112221 222221100 012445777777776554
Q ss_pred CC-ChHHHHHHH-HHH---------------------------------------------------HHhc---cCCCch
Q psy4020 206 KS-ESGLRVLAV-NIL---------------------------------------------------GRFL---LNNDKN 229 (530)
Q Consensus 206 ~~-~~~l~~~~v-~~L---------------------------------------------------~~lL---~s~d~n 229 (530)
.. +.+++.+.. +++ |.|+ .+.=.+
T Consensus 309 ~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~E 388 (823)
T KOG2259|consen 309 EQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYE 388 (823)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHH
Confidence 32 111111110 011 1121 111257
Q ss_pred hHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccCh-----hhHHHHH--------------HH
Q psy4020 230 IRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNS-----ANVRSMM--------------KE 290 (530)
Q Consensus 230 iry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~-----~Nv~~Iv--------------~e 290 (530)
+|-.|..++..++...|..-......+.+.++|+...+|.+|+.-+..+++. +-...|+ .|
T Consensus 389 VR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~e 468 (823)
T KOG2259|consen 389 VRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRE 468 (823)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8999999999999999987777777778888999889999999888877643 2222222 23
Q ss_pred HHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 291 LLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 291 L~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
|+...+-.|.+.-..++.++...-.|||.|.+.....+.++-+.
T Consensus 469 lL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGqn 512 (823)
T KOG2259|consen 469 LLKNARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQN 512 (823)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhcc
Confidence 33333333555566778888888888988877666666665544
No 39
>KOG1078|consensus
Probab=97.52 E-value=0.0059 Score=67.31 Aligned_cols=237 Identities=16% Similarity=0.170 Sum_probs=149.5
Q ss_pred cCCCChhh---hhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCC
Q psy4020 71 LNSSTQFV---VGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKN 147 (530)
Q Consensus 71 L~s~n~~v---r~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n 147 (530)
+.|..+.+ .|.|+..+.+....++.+ ....++-++.++.+-.|=+|...+.++...+|+.+...-..+.++++|.|
T Consensus 254 l~~K~emV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~N 332 (865)
T KOG1078|consen 254 LRHKSEMVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSN 332 (865)
T ss_pred HhchhHHHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccc
Confidence 45566655 456666666655555555 66777888888999999999999999999999999877778888888888
Q ss_pred CcchHHHHHHH----------------------------------HHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcch
Q psy4020 148 HAIHQVKILKL----------------------------------LRILGKNDVEASEAMNDILAQVATNTETSKNVGNT 193 (530)
Q Consensus 148 ~~V~qi~iL~l----------------------------------L~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~a 193 (530)
-++.-.+|-.+ ++.++..-|.-..-++..|..++.. +..- .-..
T Consensus 333 rsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~-eGg~-e~K~ 410 (865)
T KOG1078|consen 333 RSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLRE-EGGF-EFKR 410 (865)
T ss_pred cchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHh-ccCc-hHHH
Confidence 77633332222 2223322333333444555554442 1000 0001
Q ss_pred hHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHH--HHHHHHHhhhccCCcHHHHHHH
Q psy4020 194 ILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAV--QRHRNTILECLKDPDVSIRRRA 271 (530)
Q Consensus 194 V~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~--~~~~~~i~~~l~d~d~~Ir~~a 271 (530)
-.++|+-.++. .+++....+...|+.|+. |.+.+.++.+.|..+....|..- ..|...|.+..-=.+..+|--|
T Consensus 411 aivd~Ii~iie--~~pdsKe~~L~~LCefIE--Dce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaA 486 (865)
T KOG1078|consen 411 AIVDAIIDIIE--ENPDSKERGLEHLCEFIE--DCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAA 486 (865)
T ss_pred HHHHHHHHHHH--hCcchhhHHHHHHHHHHH--hccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHH
Confidence 22333333332 223334455566777775 45677788887777776555322 2344445443322346799999
Q ss_pred HHHHHhcc--ChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHH
Q psy4020 272 LELSFALV--NSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCA 314 (530)
Q Consensus 272 L~ll~~l~--n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la 314 (530)
+..+.+.+ ++.--..|..-|..++.+.|++.|..+.-+...+-
T Consensus 487 v~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 487 VSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 99999988 77777788888899999999999887766655544
No 40
>KOG0212|consensus
Probab=97.51 E-value=0.056 Score=57.93 Aligned_cols=256 Identities=16% Similarity=0.144 Sum_probs=149.5
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHhhccC-ChhH---HHHHHHHHHhhcCCCChhhhhHH---HHHHhcCCChhh----HH
Q psy4020 28 LECLKLIASSRFTDKRIGYLGAMLLLDE-RQDV---HLLITNSLKNDLNSSTQFVVGLA---LCTLGAIASPEM----SR 96 (530)
Q Consensus 28 ~~vikl~~S~~~~~Krl~YL~l~~~~~~-~~e~---~~L~~Nsl~kDL~s~n~~vr~lA---Lr~l~~i~~~el----~~ 96 (530)
+.++.+++.+|...|--+.-.+-..++- +.++ .-.+--.+.|=..+++..+||.| =|.+-.|.+++- .+
T Consensus 87 ~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~ 166 (675)
T KOG0212|consen 87 PPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLP 166 (675)
T ss_pred HHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHH
Confidence 5577888888877665443333332221 1111 11223445555667778888877 355555555443 46
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhh-----HHhhHHHHHHhcCCCCCcc---------------------
Q psy4020 97 DLASEVERLMKSSNAYIRKKAALCAYRIILKVPEL-----MEIFLPATRLLLSDKNHAI--------------------- 150 (530)
Q Consensus 97 ~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~-----i~~~i~~l~~lL~d~n~~V--------------------- 150 (530)
.++|-+..-+...+|+.|.--+-=+. +....|++ ++.+++-+..+|.|.++.|
T Consensus 167 ~~ipLL~eriy~~n~~tR~flv~Wl~-~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 167 EFIPLLRERIYVINPMTRQFLVSWLY-VLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHH-HHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 77787888888889999986444444 44446653 2467788888888887766
Q ss_pred --------------------hHHHHHHHHHhhcCCChhh-HHHHHHHHHHHhhcccCCCCCcchhHHHHHHH----Hhcc
Q psy4020 151 --------------------HQVKILKLLRILGKNDVEA-SEAMNDILAQVATNTETSKNVGNTILYETVLS----IMDI 205 (530)
Q Consensus 151 --------------------~qi~iL~lL~~l~~~~~~~-~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~----i~~l 205 (530)
+|.+.+.-++.+.+..+.. .-.+-+++..+++..+.+ ...-.+++... ++.+
T Consensus 246 ~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~---e~~~i~~~a~~~n~~l~~l 322 (675)
T KOG0212|consen 246 MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDT---EEMSIKEYAQMVNGLLLKL 322 (675)
T ss_pred cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCC---ccccHHHHHHHHHHHHHHH
Confidence 2333333333332221110 001112222222221111 11112222221 2222
Q ss_pred CCCh-----HHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHh----hhccCCcHHHHHHHHHHHH
Q psy4020 206 KSES-----GLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTIL----ECLKDPDVSIRRRALELSF 276 (530)
Q Consensus 206 ~~~~-----~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~----~~l~d~d~~Ir~~aL~ll~ 276 (530)
-.++ --....++.|.+.+.++.-+.|..+|+.+..+..++|.-+-.|...|| .-|.|++..+-.++|+++.
T Consensus 323 ~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla 402 (675)
T KOG0212|consen 323 VSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLA 402 (675)
T ss_pred HhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHH
Confidence 1111 112356788889998888999999999999999999977666666555 3466888889999999999
Q ss_pred hccChhhHHHH
Q psy4020 277 ALVNSANVRSM 287 (530)
Q Consensus 277 ~l~n~~Nv~~I 287 (530)
.+|+++|....
T Consensus 403 ~i~~s~~~~~~ 413 (675)
T KOG0212|consen 403 SICSSSNSPNL 413 (675)
T ss_pred HHhcCcccccH
Confidence 99988876433
No 41
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.48 E-value=0.00068 Score=55.23 Aligned_cols=75 Identities=28% Similarity=0.300 Sum_probs=57.5
Q ss_pred HHHHhhc-CCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhc
Q psy4020 65 NSLKNDL-NSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLL 143 (530)
Q Consensus 65 Nsl~kDL-~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL 143 (530)
..+.+-| +++|+.+|..|+++|+.+..++. .+.+.+.+.|+++.||..|+.++.++- . ++.++.+.+++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~i~--~----~~~~~~L~~~l 71 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPEA----IPALIELLKDEDPMVRRAAARALGRIG--D----PEAIPALIKLL 71 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHH----HHHHHHHHTSSSHHHHHHHHHHHHCCH--H----HHTHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHcCCCHHHHHHHHHHHHHhC--C----HHHHHHHHHHH
Confidence 3566667 89999999999999999987744 566666779999999999999999873 2 34666677777
Q ss_pred CCCCCc
Q psy4020 144 SDKNHA 149 (530)
Q Consensus 144 ~d~n~~ 149 (530)
.+.+..
T Consensus 72 ~~~~~~ 77 (88)
T PF13646_consen 72 QDDDDE 77 (88)
T ss_dssp TC-SSH
T ss_pred cCCCcH
Confidence 665543
No 42
>KOG1060|consensus
Probab=97.48 E-value=0.088 Score=58.47 Aligned_cols=241 Identities=18% Similarity=0.205 Sum_probs=136.8
Q ss_pred HHHhhcCCCChhhhhHHHHHHhcCC--ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhc
Q psy4020 66 SLKNDLNSSTQFVVGLALCTLGAIA--SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLL 143 (530)
Q Consensus 66 sl~kDL~s~n~~vr~lALr~l~~i~--~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL 143 (530)
...|...+.|..++-|----|-+.+ .|+++---+..+++.|.|+|+.+|-.|+-.+..| +.|-+++..+-.++++.
T Consensus 75 ~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsI--Rvp~IaPI~llAIk~~~ 152 (968)
T KOG1060|consen 75 AVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSI--RVPMIAPIMLLAIKKAV 152 (968)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhc--chhhHHHHHHHHHHHHh
Confidence 3444445555555444433333333 2333333344555555555555555555554443 34444445555555555
Q ss_pred CCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCC-hHHHHHHHHHHHHh
Q psy4020 144 SDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSE-SGLRVLAVNILGRF 222 (530)
Q Consensus 144 ~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~-~~l~~~~v~~L~~l 222 (530)
.|..+-|-+.... .+.++..-+|+...++.+++..++... ++-|+=.|+-++-.+-++ -+++-.=..+|+++
T Consensus 153 ~D~s~yVRk~AA~-AIpKLYsLd~e~k~qL~e~I~~LLaD~------splVvgsAv~AF~evCPerldLIHknyrklC~l 225 (968)
T KOG1060|consen 153 TDPSPYVRKTAAH-AIPKLYSLDPEQKDQLEEVIKKLLADR------SPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRL 225 (968)
T ss_pred cCCcHHHHHHHHH-hhHHHhcCChhhHHHHHHHHHHHhcCC------CCcchhHHHHHHHHhchhHHHHhhHHHHHHHhh
Confidence 5555555443322 233445557777778888888887643 344555555444333222 22333334456666
Q ss_pred ccCCCchhHHHHHHHHHHHhcc---ChHH--------------------------HHH-H---HHHHhhhccCCcHHHHH
Q psy4020 223 LLNNDKNIRYVALNTLLRTVYI---DTSA--------------------------VQR-H---RNTILECLKDPDVSIRR 269 (530)
Q Consensus 223 L~s~d~niry~aL~~L~~l~~~---~p~~--------------------------~~~-~---~~~i~~~l~d~d~~Ir~ 269 (530)
|-+=|.==+-+.+.+|.+.+.. .|.. ..+ | ....=.||.+.++++-.
T Consensus 226 l~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVm 305 (968)
T KOG1060|consen 226 LPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVM 305 (968)
T ss_pred ccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHH
Confidence 6433333455566666555432 1210 000 1 11122356688889999
Q ss_pred HHHHHHHhccChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHh
Q psy4020 270 RALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAER 316 (530)
Q Consensus 270 ~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k 316 (530)
-+-.+.+.++-..-+..|++-|+.-++ ...+.+......|+.++.+
T Consensus 306 A~aql~y~lAP~~~~~~i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~ 351 (968)
T KOG1060|consen 306 AVAQLFYHLAPKNQVTKIAKALVRLLR-SNREVQYVVLQNIATISIK 351 (968)
T ss_pred HHHhHHHhhCCHHHHHHHHHHHHHHHh-cCCcchhhhHHHHHHHHhc
Confidence 999999999988888889999998665 4778888899999999876
No 43
>KOG1077|consensus
Probab=97.45 E-value=0.013 Score=63.99 Aligned_cols=319 Identities=20% Similarity=0.290 Sum_probs=183.6
Q ss_pred hhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCC--cchHHH
Q psy4020 77 FVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNH--AIHQVK 154 (530)
Q Consensus 77 ~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~--~V~qi~ 154 (530)
.+==+++..|-+ .+.++...+...|++=|.+++|.----|+.|+..+-. -|..+.|-+.+..+|...+. .|-|-.
T Consensus 92 qIGYl~is~L~n-~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~~DI~KlLvS~~~~~~vkqka 168 (938)
T KOG1077|consen 92 QIGYLFISLLLN-ENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFADDIPKLLVSGSSMDYVKQKA 168 (938)
T ss_pred HHhHHHHHHHHh-cchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhhhhHHHHhCCcchHHHHHHH
Confidence 333456666655 4588899999999999999998888888888887754 34667788888888876554 355655
Q ss_pred HHHHHHhhcCCChhh--HHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccC-CChH----HHHHHHHHHHHhccCCC
Q psy4020 155 ILKLLRILGKNDVEA--SEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIK-SESG----LRVLAVNILGRFLLNND 227 (530)
Q Consensus 155 iL~lL~~l~~~~~~~--~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~-~~~~----l~~~~v~~L~~lL~s~d 227 (530)
.|-+|+.|-. .|+. ...-.+.+..++... ...|+..++..|-.+. .+++ ..-.++..|.+.....+
T Consensus 169 ALclL~L~r~-spDl~~~~~W~~riv~LL~D~------~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~ 241 (938)
T KOG1077|consen 169 ALCLLRLFRK-SPDLVNPGEWAQRIVHLLDDQ------HMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVG 241 (938)
T ss_pred HHHHHHHHhc-CccccChhhHHHHHHHHhCcc------ccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcc
Confidence 5555555533 2332 112222333344432 2345555555443321 1221 12234444444332111
Q ss_pred c---hhH-------HHHHHHHHHHhccC-----hH---HHHHHHHHHhhhccCCc-----------HHHHHHHHHHHHhc
Q psy4020 228 K---NIR-------YVALNTLLRTVYID-----TS---AVQRHRNTILECLKDPD-----------VSIRRRALELSFAL 278 (530)
Q Consensus 228 ~---nir-------y~aL~~L~~l~~~~-----p~---~~~~~~~~i~~~l~d~d-----------~~Ir~~aL~ll~~l 278 (530)
. +.- |+... +.++.+.+ |. .+.+....|+.-..+++ ..|--.|+.+...+
T Consensus 242 t~~qdYTyy~vP~PWL~vK-l~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~ 320 (938)
T KOG1077|consen 242 TSLQDYTYYFVPAPWLQVK-LLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHL 320 (938)
T ss_pred cchhhceeecCCChHHHHH-HHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHc
Confidence 1 000 11111 11111111 11 11122223332222111 12333455555555
Q ss_pred cChhh-HHHHHHHHHHHhhhcCchhhhhhHHHHHHHHH-hhCC-CchhHHHHHHHHHHHhhhhhhcchhhhHHHHHHHHH
Q psy4020 279 VNSAN-VRSMMKELLIFLEKSEPDFKAHCSSNIVLCAE-RFAP-NKRWHLDTLLKVLVANLLGFSNRALRDQRRALELSF 355 (530)
Q Consensus 279 ~n~~N-v~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~-k~~~-~~~~~vd~Ll~lL~~~~~~~v~~a~eiq~~a~e~~~ 355 (530)
=.+.+ +..-++.|-.|+...+..+|-.....++.+|. +|+- .-+.+.|+++..|.+. .-++++|||+++.-
T Consensus 321 D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkte------rDvSirrravDLLY 394 (938)
T KOG1077|consen 321 DSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTE------RDVSIRRRAVDLLY 394 (938)
T ss_pred CCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccc------cchHHHHHHHHHHH
Confidence 43333 33445666667766666777777777777664 4442 2346677777777741 23478999999987
Q ss_pred HhhcCcchHHHHHhhccCCCCCCCccccCCCCCcccccccCCCCcCCcchhhhhhhh
Q psy4020 356 ALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLV 412 (530)
Q Consensus 356 ll~~~p~~r~~ile~l~~l~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~l~dll~ 412 (530)
.+--..|.+..+-|.|-|++.+++-...+...+.+..+++||+.-.|..|.++.++.
T Consensus 395 ~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLir 451 (938)
T KOG1077|consen 395 AMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIR 451 (938)
T ss_pred HHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 776677888888899999999999887777777788999999988899997776554
No 44
>KOG2023|consensus
Probab=97.44 E-value=0.021 Score=62.04 Aligned_cols=251 Identities=20% Similarity=0.208 Sum_probs=147.8
Q ss_pred hHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-----hhhHHhhHHHHHHhcCCCCCcc----
Q psy4020 80 GLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKV-----PELMEIFLPATRLLLSDKNHAI---- 150 (530)
Q Consensus 80 ~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~-----p~~i~~~i~~l~~lL~d~n~~V---- 150 (530)
+.||..|+++--.++.+.+.|.+++.|.+..-.||-++++|+..|..-. |. +.+++|.+.++|+|+.+.|
T Consensus 376 AAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~-LpeLip~l~~~L~DKkplVRsIT 454 (885)
T KOG2023|consen 376 AAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPH-LPELIPFLLSLLDDKKPLVRSIT 454 (885)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccc-hHHHHHHHHHHhccCccceeeee
Confidence 5679999999999999999999999999999999999999999886632 32 3367788888899988766
Q ss_pred ------------------hHHHHH-HHHHhhcCCChhh---------------HHHHHHHHHHHhhcc------cCCCCC
Q psy4020 151 ------------------HQVKIL-KLLRILGKNDVEA---------------SEAMNDILAQVATNT------ETSKNV 190 (530)
Q Consensus 151 ------------------~qi~iL-~lL~~l~~~~~~~---------------~~~l~~iL~~~l~~~------~~~~n~ 190 (530)
.-..+| .+++++...+... .+++...+..++++. =+. .
T Consensus 455 CWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~--K 532 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQK--K 532 (885)
T ss_pred eeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhh--c
Confidence 111111 2233332222111 112222222222110 001 1
Q ss_pred cchhHHHHHHHHhc----------------------------------------------c-----CCChHHHHHHHHHH
Q psy4020 191 GNTILYETVLSIMD----------------------------------------------I-----KSESGLRVLAVNIL 219 (530)
Q Consensus 191 ~~aV~~eai~~i~~----------------------------------------------l-----~~~~~l~~~~v~~L 219 (530)
|--|+|.|+.++.+ + .-.+.+.+.|.+.+
T Consensus 533 NLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il 612 (885)
T KOG2023|consen 533 NLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRIL 612 (885)
T ss_pred ceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHH
Confidence 33455555554321 0 01123445566555
Q ss_pred HHhc------------cCCCchhHHHHHHHHHHHhcc---C--hHHHHHHHH-HHhhhccCCcHHHHHHHHHHHHhccCh
Q psy4020 220 GRFL------------LNNDKNIRYVALNTLLRTVYI---D--TSAVQRHRN-TILECLKDPDVSIRRRALELSFALVNS 281 (530)
Q Consensus 220 ~~lL------------~s~d~niry~aL~~L~~l~~~---~--p~~~~~~~~-~i~~~l~d~d~~Ir~~aL~ll~~l~n~ 281 (530)
++-+ ...|.+.-.++|+.+.-+++- + |-+.+.... -++.|+.|.-+.+|.-+..++..++-.
T Consensus 613 ~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~ 692 (885)
T KOG2023|consen 613 QKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKA 692 (885)
T ss_pred HHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 5322 123556666778888777652 2 222233333 446799999999999999999987754
Q ss_pred hhHHHHHHHHHHHhh----hcCc---hhhhhhHHHHHHHHHhhCCCch-hHHHHHHHHHHH
Q psy4020 282 ANVRSMMKELLIFLE----KSEP---DFKAHCSSNIVLCAERFAPNKR-WHLDTLLKVLVA 334 (530)
Q Consensus 282 ~Nv~~Iv~eL~~yl~----~~d~---~~~~~~i~~I~~la~k~~~~~~-~~vd~Ll~lL~~ 334 (530)
= .+.+...+-.|+. .-++ ....-++-+||.+|.|+..+.. |.-.++.+++..
T Consensus 693 c-~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~i 752 (885)
T KOG2023|consen 693 C-FEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITI 752 (885)
T ss_pred H-HHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHH
Confidence 1 3333333333332 1233 3456788899999999976544 444455554443
No 45
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.43 E-value=0.0098 Score=58.99 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=105.2
Q ss_pred CCChhhhhHHHHHHhcCCChhhHHH------HHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--ChhhHHhhHHHHHHhcC
Q psy4020 73 SSTQFVVGLALCTLGAIASPEMSRD------LASEVERLMKSSNAYIRKKAALCAYRIILK--VPELMEIFLPATRLLLS 144 (530)
Q Consensus 73 s~n~~vr~lALr~l~~i~~~el~~~------l~~~V~~~l~~~~~yVRK~A~la~~ki~~~--~p~~i~~~i~~l~~lL~ 144 (530)
+.+|++++.|+-++++.......++ ..+.|...+.+++|-||.+|+-|+..+--. +.+.++.+++.+-+...
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 4679999999999999886444444 346688999999999999999999876443 23455667776665443
Q ss_pred C-CCCcchHHHHHHHHHhhcCCChh---hHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHH-----
Q psy4020 145 D-KNHAIHQVKILKLLRILGKNDVE---ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLA----- 215 (530)
Q Consensus 145 d-~n~~V~qi~iL~lL~~l~~~~~~---~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~----- 215 (530)
. .-.+-.|..-|++|+.+...+.. ....+-+++ .++... +.-+-+.+.+++++++.++.+.+..
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll-~LL~~G------~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~ 176 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLL-SLLSSG------SEKTKVQVLKVLVNLSENPDMTRELLSAQV 176 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHH-HHHHcC------ChHHHHHHHHHHHHhccCHHHHHHHHhccc
Confidence 3 22223699999999998755422 222222332 334432 4458889999999999887654432
Q ss_pred HHHHHHhccC-CCchhHHHHHHHHHHH
Q psy4020 216 VNILGRFLLN-NDKNIRYVALNTLLRT 241 (530)
Q Consensus 216 v~~L~~lL~s-~d~niry~aL~~L~~l 241 (530)
...+..++.. .+.++-.-+|..+..|
T Consensus 177 ~~~~~~Lf~~~~~~~~l~~~l~~~~ni 203 (254)
T PF04826_consen 177 LSSFLSLFNSSESKENLLRVLTFFENI 203 (254)
T ss_pred hhHHHHHHccCCccHHHHHHHHHHHHH
Confidence 2344455543 3455555555555554
No 46
>KOG0166|consensus
Probab=97.35 E-value=0.038 Score=59.42 Aligned_cols=209 Identities=14% Similarity=0.151 Sum_probs=143.8
Q ss_pred HHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHH-----HHHHhhcCCCCh--hhh--hHHHHHHhcCCC--h--hhHH
Q psy4020 30 CLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLIT-----NSLKNDLNSSTQ--FVV--GLALCTLGAIAS--P--EMSR 96 (530)
Q Consensus 30 vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~-----Nsl~kDL~s~n~--~vr--~lALr~l~~i~~--~--el~~ 96 (530)
.++|++|++...+.-+-.++...+...++..-.+. ..+..-++.+++ +.| ..+|+-||+-.+ | +-+.
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~ 236 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA 236 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 48899999999999999999999988876533322 223333444443 443 345666666553 2 5578
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHH
Q psy4020 97 DLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASE 171 (530)
Q Consensus 97 ~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~ 171 (530)
.+.+.+.+++.|.+++|..-|+-|+..+-...+|.+. ...+++.++|....+.| +.-.||.+......+....+
T Consensus 237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v-~~PaLRaiGNIvtG~d~QTq 315 (514)
T KOG0166|consen 237 PILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKV-VTPALRAIGNIVTGSDEQTQ 315 (514)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCccc-ccHHHhhccceeeccHHHHH
Confidence 8999999999999999999999999988877777665 45788999998877766 45567777666555554444
Q ss_pred HHH-----HHHHHHhhcccCCCCCcchhHHHHHHHHhccCC-ChHHHHHH-----HHHHHHhccCCCchhHHHHHHHHHH
Q psy4020 172 AMN-----DILAQVATNTETSKNVGNTILYETVLSIMDIKS-ESGLRVLA-----VNILGRFLLNNDKNIRYVALNTLLR 240 (530)
Q Consensus 172 ~l~-----~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~-~~~l~~~~-----v~~L~~lL~s~d~niry~aL~~L~~ 240 (530)
.++ ..+..++++. ....+.-||+.+|.++.. +++-++.+ +..|..+|.+.+..+|--|...+..
T Consensus 316 ~vi~~~~L~~l~~ll~~s-----~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN 390 (514)
T KOG0166|consen 316 VVINSGALPVLSNLLSSS-----PKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISN 390 (514)
T ss_pred HHHhcChHHHHHHHhccC-----cchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHh
Confidence 333 3344444422 244588899999988865 33333332 2356667777777777777777776
Q ss_pred Hhcc
Q psy4020 241 TVYI 244 (530)
Q Consensus 241 l~~~ 244 (530)
+...
T Consensus 391 ~ts~ 394 (514)
T KOG0166|consen 391 LTSS 394 (514)
T ss_pred hccc
Confidence 6543
No 47
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.11 E-value=0.058 Score=53.51 Aligned_cols=175 Identities=15% Similarity=0.162 Sum_probs=112.6
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHh--hChhhHH--hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHH
Q psy4020 100 SEVERLMKS-SNAYIRKKAALCAYRIIL--KVPELME--IFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMN 174 (530)
Q Consensus 100 ~~V~~~l~~-~~~yVRK~A~la~~ki~~--~~p~~i~--~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~ 174 (530)
..+..+|.. .+|+++.+|..++...-. ...+.+. ..++.+.++|.+.++.+ +.+.+..+..+....+.. ..+-
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~v-r~~AL~aL~Nls~~~en~-~~Ik 92 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSV-REKALNALNNLSVNDENQ-EQIK 92 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHH-HHHHHHHHHhcCCChhhH-HHHH
Confidence 444556664 589999999999887532 2335555 35888999999999987 567788887776554332 2233
Q ss_pred HHHHHHhhcccCCCCCcchhHHHHHHHHhccCCCh---HHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChH----
Q psy4020 175 DILAQVATNTETSKNVGNTILYETVLSIMDIKSES---GLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTS---- 247 (530)
Q Consensus 175 ~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~---~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~---- 247 (530)
..+.++...+.+ ..-+..+-..+.+.+.+++... .+....+..+..+|.+++.++|.-+|+.|..+.. +|.
T Consensus 93 ~~i~~Vc~~~~s-~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np~~~~~ 170 (254)
T PF04826_consen 93 MYIPQVCEETVS-SPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NPDMTRE 170 (254)
T ss_pred HHHHHHHHHHhc-CCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc-CHHHHHH
Confidence 344444443221 1235678889999999887543 4455566667788888899999999999988875 343
Q ss_pred HHHH-HHHHHhhhccC-CcHHHHHHHHHHHHhc
Q psy4020 248 AVQR-HRNTILECLKD-PDVSIRRRALELSFAL 278 (530)
Q Consensus 248 ~~~~-~~~~i~~~l~d-~d~~Ir~~aL~ll~~l 278 (530)
++.. -...++.+++. .+..+-.++|.+.-++
T Consensus 171 Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni 203 (254)
T PF04826_consen 171 LLSAQVLSSFLSLFNSSESKENLLRVLTFFENI 203 (254)
T ss_pred HHhccchhHHHHHHccCCccHHHHHHHHHHHHH
Confidence 3322 22334443433 2456666666665544
No 48
>KOG1248|consensus
Probab=97.10 E-value=0.18 Score=58.56 Aligned_cols=285 Identities=15% Similarity=0.141 Sum_probs=165.4
Q ss_pred hHHHHHHHHHhhhhcCCCCCCCchHHHHHhhcCCCCchhHHHHHHHHhh------ccCChhHHHHHHHHHHh-hcCCCCh
Q psy4020 4 IRQVINDAVERDTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLL------LDERQDVHLLITNSLKN-DLNSSTQ 76 (530)
Q Consensus 4 i~~ei~~~~~~~i~mlG~d~sf~~~~vikl~~S~~~~~Krl~YL~l~~~------~~~~~e~~~L~~Nsl~k-DL~s~n~ 76 (530)
++.++.....+|++.-+.|+.-.+.+.+...++..- ....-..+++.+ ....++-.+-..+++.. +.++.+.
T Consensus 590 ~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~-~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~ 668 (1176)
T KOG1248|consen 590 RSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLD-ESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSST 668 (1176)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccch-hhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccH
Confidence 456666666689998899988777777765555331 222222222221 11122222222234444 4455577
Q ss_pred hhhhHHHHHHhcCC--------ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh----hhHHhhHHHHHHhcC
Q psy4020 77 FVVGLALCTLGAIA--------SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVP----ELMEIFLPATRLLLS 144 (530)
Q Consensus 77 ~vr~lALr~l~~i~--------~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p----~~i~~~i~~l~~lL~ 144 (530)
-++-=|-|.|..+. ...-++++...+.+.+.+...+.|+.++-|+-++++..| +++...++++.=.++
T Consensus 669 ~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~K 748 (1176)
T KOG1248|consen 669 KVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLK 748 (1176)
T ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcc
Confidence 77766655444433 234456777777777777899999999999999999998 555555655554444
Q ss_pred CCCCcchH--HHHHHHHH------hhcCCCh--hhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC--ChHHH
Q psy4020 145 DKNHAIHQ--VKILKLLR------ILGKNDV--EASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKS--ESGLR 212 (530)
Q Consensus 145 d~n~~V~q--i~iL~lL~------~l~~~~~--~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~--~~~l~ 212 (530)
+.|..--| -.+|..+. ..+. +| ...+.++.+|..-+.+.+ .++.+.. ++....++.+.+. +.+..
T Consensus 749 e~n~~aR~~Af~lL~~i~~i~~~~d~g~-e~~~~~lnefl~~Isagl~gd~-~~~~as~-Ivai~~il~e~~~~ld~~~l 825 (1176)
T KOG1248|consen 749 EVNVKARRNAFALLVFIGAIQSSLDDGN-EPASAILNEFLSIISAGLVGDS-TRVVASD-IVAITHILQEFKNILDDETL 825 (1176)
T ss_pred cccHHHHhhHHHHHHHHHHHHhhhcccc-cchHHHHHHHHHHHHhhhcccH-HHHHHHH-HHHHHHHHHHHhccccHHHH
Confidence 43322211 11222222 2221 22 122334444433222211 1111222 2222222333322 34556
Q ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHH-HHHHHH----HHhhhccCCcHHHHHHHHHHHHhccChhhHHHH
Q psy4020 213 VLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSA-VQRHRN----TILECLKDPDVSIRRRALELSFALVNSANVRSM 287 (530)
Q Consensus 213 ~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~-~~~~~~----~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~I 287 (530)
...++.+..+|.++.++++-.|+.-+..++...|+. +++|.. .++....|...++|.+.--++-.|+-.--++
T Consensus 826 ~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~-- 903 (1176)
T KOG1248|consen 826 EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAE-- 903 (1176)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHH--
Confidence 677888899999999999999999999999999964 466764 4455556767899999888888887655554
Q ss_pred HHHHHHHhh
Q psy4020 288 MKELLIFLE 296 (530)
Q Consensus 288 v~eL~~yl~ 296 (530)
+|..|+.
T Consensus 904 --eLe~~~p 910 (1176)
T KOG1248|consen 904 --ELESFLP 910 (1176)
T ss_pred --HHHhhCH
Confidence 5555555
No 49
>KOG1242|consensus
Probab=97.05 E-value=0.25 Score=53.69 Aligned_cols=220 Identities=14% Similarity=0.043 Sum_probs=129.2
Q ss_pred hhhcCCCCCCCc----hHHHHHhhcCCCCchhHHHHHHHHhhccCChh-----HHHHHHHHHHhhcCCCChhhhhHHHHH
Q psy4020 15 DTYLPKYPAHFG----QLECLKLIASSRFTDKRIGYLGAMLLLDERQD-----VHLLITNSLKNDLNSSTQFVVGLALCT 85 (530)
Q Consensus 15 ~i~mlG~d~sf~----~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e-----~~~L~~Nsl~kDL~s~n~~vr~lALr~ 85 (530)
++..+|-+..-. ++.+...+.+..-..|+.+--++....+.-+. +..=.+.++..+ .=......--.|..
T Consensus 202 ~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~ 280 (569)
T KOG1242|consen 202 AQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGA 280 (569)
T ss_pred HHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHH
Confidence 556678665533 45677788888888888888887776654332 222223333333 11222222233455
Q ss_pred HhcCCChh---hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--ChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHH
Q psy4020 86 LGAIASPE---MSRDLASEVERLMKSSNAYIRKKAALCAYRIILK--VPELMEIFLPATRLLLSDKNHAIHQVKILKLLR 160 (530)
Q Consensus 86 l~~i~~~e---l~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~--~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~ 160 (530)
|+..+... ..+.++|.+.+.+.|.+|-|||+|.-|+.++... +|| +..++|.+.+.+.|....+ ...++.|.
T Consensus 281 m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~~~~--~e~~~~L~ 357 (569)
T KOG1242|consen 281 MADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPSCYT--PECLDSLG 357 (569)
T ss_pred HHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCcccch--HHHHHhhc
Confidence 55555433 3578889999999999999999999999998764 566 7789999999999977433 11122221
Q ss_pred h--h-cCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHh---ccCCChH----HHHHHHHHHHHhccCCCchh
Q psy4020 161 I--L-GKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIM---DIKSESG----LRVLAVNILGRFLLNNDKNI 230 (530)
Q Consensus 161 ~--l-~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~---~l~~~~~----l~~~~v~~L~~lL~s~d~ni 230 (530)
. + ..-++.....|..+|.+-+... +...--.++..+- .+-.++. ........+..-+....|++
T Consensus 358 ~ttFV~~V~~psLalmvpiL~R~l~eR------st~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEv 431 (569)
T KOG1242|consen 358 ATTFVAEVDAPSLALMVPILKRGLAER------STSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEV 431 (569)
T ss_pred ceeeeeeecchhHHHHHHHHHHHHhhc------cchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhH
Confidence 1 1 1123333345555555443321 2223333333322 2222322 12233344444455568999
Q ss_pred HHHHHHHHHHHhcc
Q psy4020 231 RYVALNTLLRTVYI 244 (530)
Q Consensus 231 ry~aL~~L~~l~~~ 244 (530)
|+++.+.|..+..+
T Consensus 432 R~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 432 RAVAARALGALLER 445 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887764
No 50
>KOG1061|consensus
Probab=96.95 E-value=0.3 Score=54.35 Aligned_cols=313 Identities=15% Similarity=0.130 Sum_probs=179.2
Q ss_pred hHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC--ChhhH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh---
Q psy4020 58 DVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA--SPEMS--RDLASEVERLMKSSNAYIRKKAALCAYRIILKVPE--- 130 (530)
Q Consensus 58 e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~--~~el~--~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~--- 130 (530)
.+.--.++-+++-+++.+|++|--|--+.+++. +++++ ..+.+.++.++.|.+|-|--+|+-++.-|....|+
T Consensus 117 ~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 117 KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 355567889999999999999988877777765 46665 44888899999999999999999999988887763
Q ss_pred ------hHHhhHHHH---------------------------------HHhcCCCCCcc---------------------
Q psy4020 131 ------LMEIFLPAT---------------------------------RLLLSDKNHAI--------------------- 150 (530)
Q Consensus 131 ------~i~~~i~~l---------------------------------~~lL~d~n~~V--------------------- 150 (530)
++..++..+ ...|...|++|
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~ 276 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNEL 276 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHH
Confidence 122222111 11112223333
Q ss_pred ------------------hHHHHHHHHHh----------------hcCC-Chhh-HHHHHHHH---------HHHhhc-c
Q psy4020 151 ------------------HQVKILKLLRI----------------LGKN-DVEA-SEAMNDIL---------AQVATN-T 184 (530)
Q Consensus 151 ------------------~qi~iL~lL~~----------------l~~~-~~~~-~~~l~~iL---------~~~l~~-~ 184 (530)
.|-..|+=+.. |++. ||-. +.+=.+++ .+++.. .
T Consensus 277 ~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~ 356 (734)
T KOG1061|consen 277 LFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELK 356 (734)
T ss_pred HHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 11111111110 1111 1110 00001111 111110 0
Q ss_pred cCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCC-
Q psy4020 185 ETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDP- 263 (530)
Q Consensus 185 ~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~- 263 (530)
+.....+...+-+++++|-++...-+-...|+..|..++.-+-.-+---+...+..+...+|+..+......-.++++=
T Consensus 357 eYatevD~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~ 436 (734)
T KOG1061|consen 357 EYATEVDVDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQ 436 (734)
T ss_pred HhhhhhCHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccC
Confidence 0011235567788888887765322212568888888876433333333444455566667765433222222223221
Q ss_pred cHHHHHHHHH-HHHhcc-ChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHHhhhhhhc
Q psy4020 264 DVSIRRRALE-LSFALV-NSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSN 341 (530)
Q Consensus 264 d~~Ir~~aL~-ll~~l~-n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~~~~~~v~ 341 (530)
++. .|.++- |+..-+ .=+|...+++.+++-+.+.+.+.+-++..++.++-.++|+..+..+..++..=.. + +
T Consensus 437 epe-ak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~---d--~ 510 (734)
T KOG1061|consen 437 EPE-AKAALIWILGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPLATA---D--T 510 (734)
T ss_pred ChH-HHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhc---c--c
Confidence 233 344554 554444 3478888888888888877888999999999999999988666665555543221 1 1
Q ss_pred chhhhHHHHHHHHHHhhcCcchH-HHHHhhccCCCC
Q psy4020 342 RALRDQRRALELSFALVNSANVR-SMMKELLIFLEK 376 (530)
Q Consensus 342 ~a~eiq~~a~e~~~ll~~~p~~r-~~ile~l~~l~~ 376 (530)
+--+++.|+..|..++...|.+- +.++..+|.+..
T Consensus 511 ~~~dlrDr~l~Y~RlLs~~~~~a~~v~~~~kP~is~ 546 (734)
T KOG1061|consen 511 DNPDLRDRGLIYWRLLSEDPLIAKDVVLAEKPLISE 546 (734)
T ss_pred cChhhhhhHHHHHHHhhcCHHHHHHHHhcCCCcccc
Confidence 23467888899988887767664 444466675443
No 51
>KOG1242|consensus
Probab=96.94 E-value=0.17 Score=54.93 Aligned_cols=287 Identities=14% Similarity=0.149 Sum_probs=164.0
Q ss_pred CCCCCCchHHHHHhhcCCCCchhHHHHHHHHhhccCCh---hHHHHHHHHHHhhcCCCChhh----hhHHH----HHHhc
Q psy4020 20 KYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQ---DVHLLITNSLKNDLNSSTQFV----VGLAL----CTLGA 88 (530)
Q Consensus 20 G~d~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~---e~~~L~~Nsl~kDL~s~n~~v----r~lAL----r~l~~ 88 (530)
|++.+....+..+++.+.++..++=+=-.+-.+.+... +.-......+.+-..+.+.+. .++|. ..|+.
T Consensus 129 ~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~ 208 (569)
T KOG1242|consen 129 GLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP 208 (569)
T ss_pred ccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC
Confidence 66666666778889998888876655333333333321 111123344444444443332 23332 33443
Q ss_pred CCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHhhHHHHHHhcCCCCCcc-hHHHHHHHHHhhcCCC
Q psy4020 89 IASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKV-PELMEIFLPATRLLLSDKNHAI-HQVKILKLLRILGKND 166 (530)
Q Consensus 89 i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~-p~~i~~~i~~l~~lL~d~n~~V-~qi~iL~lL~~l~~~~ 166 (530)
-..|.++ .+.+.|..+..|..++||.+|..|+-.+.+.. +..++.+++.+..-+.+. .+ -....++++..+....
T Consensus 209 ~~EPyiv-~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~--kWrtK~aslellg~m~~~a 285 (569)
T KOG1242|consen 209 PFEPYIV-PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA--KWRTKMASLELLGAMADCA 285 (569)
T ss_pred CCCchHH-hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH--hhhhHHHHHHHHHHHHHhc
Confidence 4445444 57789999999999999999998887776654 445666666544433332 22 1234455565555444
Q ss_pred hhhHH----HHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccC---CChHHHHHHHHHHHHhccCCCchhHHHHHHHHH
Q psy4020 167 VEASE----AMNDILAQVATNTETSKNVGNTILYETVLSIMDIK---SESGLRVLAVNILGRFLLNNDKNIRYVALNTLL 239 (530)
Q Consensus 167 ~~~~~----~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~---~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~ 239 (530)
|...+ .+...+..++.++ ..-|.-.+..++..+. .+++ +...++.|+.-+.+....+ --++..|.
T Consensus 286 p~qLs~~lp~iiP~lsevl~DT------~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~~~~-~e~~~~L~ 357 (569)
T KOG1242|consen 286 PKQLSLCLPDLIPVLSEVLWDT------KPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPSCYT-PECLDSLG 357 (569)
T ss_pred hHHHHHHHhHhhHHHHHHHccC------CHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCcccch-HHHHHhhc
Confidence 44322 2333444444433 3456655666665553 3554 5566777777665433122 22233332
Q ss_pred HHh---ccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhcc----ChhhHHHHHHHHHHHhh----hcCchhhhhhHH
Q psy4020 240 RTV---YIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALV----NSANVRSMMKELLIFLE----KSEPDFKAHCSS 308 (530)
Q Consensus 240 ~l~---~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~----n~~Nv~~Iv~eL~~yl~----~~d~~~~~~~i~ 308 (530)
.-. ...+..+.--...+-+-+.+.+.+++|++..++-+|| ++..+...+.+|+.-++ +.++|.|..+.+
T Consensus 358 ~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaar 437 (569)
T KOG1242|consen 358 ATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAAR 437 (569)
T ss_pred ceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHH
Confidence 211 1233333333333445677888999999888776654 66677777776666654 347899999999
Q ss_pred HHHHHHHhh
Q psy4020 309 NIVLCAERF 317 (530)
Q Consensus 309 ~I~~la~k~ 317 (530)
+++.+-++-
T Consensus 438 AL~~l~e~~ 446 (569)
T KOG1242|consen 438 ALGALLERL 446 (569)
T ss_pred HHHHHHHHH
Confidence 998877654
No 52
>KOG0213|consensus
Probab=96.91 E-value=0.062 Score=59.23 Aligned_cols=251 Identities=10% Similarity=0.112 Sum_probs=154.4
Q ss_pred HHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChh----hHHhhHH
Q psy4020 63 ITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSS-NAYIRKKAALCAYRIILKVPE----LMEIFLP 137 (530)
Q Consensus 63 ~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~-~~yVRK~A~la~~ki~~~~p~----~i~~~i~ 137 (530)
.+.+++-|..+.+||||.-.-|..+-+.+.-=++.+.+.++....++ +.--|.+.+-|+-+|.-...- -+..+++
T Consensus 477 mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ 556 (1172)
T KOG0213|consen 477 MISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVK 556 (1172)
T ss_pred HHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHH
Confidence 56799999999999999999999888887777788999999988887 777788877777776654321 1345778
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCCh---HHHHH
Q psy4020 138 ATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSES---GLRVL 214 (530)
Q Consensus 138 ~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~---~l~~~ 214 (530)
.+...|.|.+..|-.+..+.+-...-...|--.+.|..++..+-+...+++...-+-.+.|+..++.+.... ..-+.
T Consensus 557 ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTre 636 (1172)
T KOG0213|consen 557 IIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTRE 636 (1172)
T ss_pred HHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHH
Confidence 888889998887733222222111112233334555556655444333344445566677777766654321 11222
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHhccC---hHHH-HHHHHHHhhhccCC--------cHHHHHHHHHHHHhccChh
Q psy4020 215 AVNILGRFLLNNDKNIRYVALNTLLRTVYID---TSAV-QRHRNTILECLKDP--------DVSIRRRALELSFALVNSA 282 (530)
Q Consensus 215 ~v~~L~~lL~s~d~niry~aL~~L~~l~~~~---p~~~-~~~~~~i~~~l~d~--------d~~Ir~~aL~ll~~l~n~~ 282 (530)
+.-++.+=..+.|.+++-++|..+.+.+... |..+ ......||++.... ...+-..+.++.-+++...
T Consensus 637 vmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~ 716 (1172)
T KOG0213|consen 637 VMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDP 716 (1172)
T ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchH
Confidence 3334444457899999999999999998643 4433 23345555544321 1223345556655655555
Q ss_pred hHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhh
Q psy4020 283 NVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERF 317 (530)
Q Consensus 283 Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~ 317 (530)
-+..++.+ +.+....||......+.++..+.
T Consensus 717 ~v~R~v~~----lkde~e~yrkm~~etv~ri~~~l 747 (1172)
T KOG0213|consen 717 IVSRVVLD----LKDEPEQYRKMVAETVSRIVGRL 747 (1172)
T ss_pred HHHHHhhh----hccccHHHHHHHHHHHHHHHhcc
Confidence 55544444 44555567766666655555443
No 53
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.91 E-value=0.11 Score=56.83 Aligned_cols=127 Identities=21% Similarity=0.214 Sum_probs=83.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHH
Q psy4020 98 LASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDIL 177 (530)
Q Consensus 98 l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL 177 (530)
-+..|..... .++-+++-|+-=+.|.|+.+|++.+..++.+.+|..|.|..| .+..++-|..+|+.+|+...++.|+|
T Consensus 24 ~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~i-R~~aik~lp~~ck~~~~~v~kvaDvL 101 (556)
T PF05918_consen 24 DYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQI-RKQAIKGLPQLCKDNPEHVSKVADVL 101 (556)
T ss_dssp HHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHH-HHHHHHHGGGG--T--T-HHHHHHHH
T ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHH-HHHHHHhHHHHHHhHHHHHhHHHHHH
Confidence 4555666655 478899999999999999999999999999999999999886 66778999999999998888999999
Q ss_pred HHHhhcccCCCCCcchhHHHHHH----HHhccCCChHHHHHHHHHHHHhcc---CCCchhHHHHHHHH
Q psy4020 178 AQVATNTETSKNVGNTILYETVL----SIMDIKSESGLRVLAVNILGRFLL---NNDKNIRYVALNTL 238 (530)
Q Consensus 178 ~~~l~~~~~~~n~~~aV~~eai~----~i~~l~~~~~l~~~~v~~L~~lL~---s~d~niry~aL~~L 238 (530)
.++++. ...+.+.+++ .++...+... ...+...+. +.|..+|.-+|.-|
T Consensus 102 ~QlL~t-------dd~~E~~~v~~sL~~ll~~d~k~t-----L~~lf~~i~~~~~~de~~Re~~lkFl 157 (556)
T PF05918_consen 102 VQLLQT-------DDPVELDAVKNSLMSLLKQDPKGT-----LTGLFSQIESSKSGDEQVRERALKFL 157 (556)
T ss_dssp HHHTT----------HHHHHHHHHHHHHHHHH-HHHH-----HHHHHHHHH---HS-HHHHHHHHHHH
T ss_pred HHHHhc-------ccHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhcccCchHHHHHHHHHH
Confidence 999874 2334444444 3443322222 222222232 46777888877766
No 54
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.87 E-value=0.11 Score=58.45 Aligned_cols=263 Identities=15% Similarity=0.132 Sum_probs=155.3
Q ss_pred HHHHHHHhhcCCCChhhhhHH---HHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHH
Q psy4020 62 LITNSLKNDLNSSTQFVVGLA---LCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPA 138 (530)
Q Consensus 62 L~~Nsl~kDL~s~n~~vr~lA---Lr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~ 138 (530)
...+-+-|-..+.|..++-+- |.-.+.. .|+.+--.++.+.+=+.|+||++|-.|+-.+..+ ..+++++.+++.
T Consensus 55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~-~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l--~~~el~~~~~~~ 131 (757)
T COG5096 55 SLFPDVIKNVATRDVELKRLLYLYLERYAKL-KPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL--RVKELLGNIIDP 131 (757)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc--ChHHHHHHHHHH
Confidence 444555555555555443333 3333443 4566667788999999999999999999888876 689999999999
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhhc--------------------CCChhhH-----------HH--------HHHHHHH
Q psy4020 139 TRLLLSDKNHAIHQVKILKLLRILG--------------------KNDVEAS-----------EA--------MNDILAQ 179 (530)
Q Consensus 139 l~~lL~d~n~~V~qi~iL~lL~~l~--------------------~~~~~~~-----------~~--------l~~iL~~ 179 (530)
+++++.|+++-|-+-.++-++..|. ..||... ++ ....+.+
T Consensus 132 ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~ 211 (757)
T COG5096 132 IKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQ 211 (757)
T ss_pred HHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhh
Confidence 9999999999883333333322221 1122110 00 0000000
Q ss_pred -------------------HhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhcc-CCCchhHHHHHHHHH
Q psy4020 180 -------------------VATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLL-NNDKNIRYVALNTLL 239 (530)
Q Consensus 180 -------------------~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~-s~d~niry~aL~~L~ 239 (530)
.+....... .+.++.++..-+......++.+...+++.+.+++. -.+.|..-.....+.
T Consensus 212 l~~~~~~~~~~~~~~~~le~L~~~~~~~-~~s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~ 290 (757)
T COG5096 212 LDLLSLSVSTEWLLLIILEVLTERVPTT-PDSAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLV 290 (757)
T ss_pred ccchhhhhhHHHHHHHHHHHHHccCCCC-CCcHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHH
Confidence 000000000 12344444433333333445566667777777663 345555555555555
Q ss_pred HHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhh----cCchhhhhhHHHHHHHHH
Q psy4020 240 RTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEK----SEPDFKAHCSSNIVLCAE 315 (530)
Q Consensus 240 ~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~----~d~~~~~~~i~~I~~la~ 315 (530)
.+....+...+ .++.....-+.+.+-++++...++..-.+...++..|..-... .+..+.+.+.+++..+++
T Consensus 291 ~Ll~~~~~~~~----~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~ 366 (757)
T COG5096 291 TLLAKPESLIQ----YVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIYYIAE 366 (757)
T ss_pred HHHcCCHHHHH----HHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhh
Confidence 55544423322 2233333346778889999999999999999888666554432 245566788899999998
Q ss_pred hhCCCchhHHHHHHHHHHH
Q psy4020 316 RFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 316 k~~~~~~~~vd~Ll~lL~~ 334 (530)
.+ .....|+..++.|+.
T Consensus 367 ~~--~~~e~v~~~ik~lgd 383 (757)
T COG5096 367 NH--IDAEMVSEAIKALGD 383 (757)
T ss_pred cc--ccHHHHHHHHHHHHh
Confidence 63 233677788887776
No 55
>KOG0414|consensus
Probab=96.80 E-value=0.035 Score=63.97 Aligned_cols=211 Identities=18% Similarity=0.213 Sum_probs=137.5
Q ss_pred HHHHHHHhhcCCCChhhhhHHHHHHhcCC--ChhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHhhHHH
Q psy4020 62 LITNSLKNDLNSSTQFVVGLALCTLGAIA--SPEMSRDLASEVERLMK-SSNAYIRKKAALCAYRIILKVPELMEIFLPA 138 (530)
Q Consensus 62 L~~Nsl~kDL~s~n~~vr~lALr~l~~i~--~~el~~~l~~~V~~~l~-~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~ 138 (530)
++.-.-++--..+||.++..|--++|++. +.++++.=.+.+...+. +++|-||.++++|+.-+.-.+|.+++.|.+.
T Consensus 923 iv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~ 1002 (1251)
T KOG0414|consen 923 IVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEH 1002 (1251)
T ss_pred HHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHH
Confidence 34444444446678999998888888865 68889998999999998 8899999999999999988899999999999
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHH
Q psy4020 139 TRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNI 218 (530)
Q Consensus 139 l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~ 218 (530)
++..|.|.++.|---. +-.+..+ ++..+++ -...+.|.+++|.+ .+++....|-+.
T Consensus 1003 Ly~rL~D~~~~vRkta-~lvlshL-------------ILndmiK--------VKGql~eMA~cl~D--~~~~IsdlAk~F 1058 (1251)
T KOG0414|consen 1003 LYRRLRDESPSVRKTA-LLVLSHL-------------ILNDMIK--------VKGQLSEMALCLED--PNAEISDLAKSF 1058 (1251)
T ss_pred HHHHhcCccHHHHHHH-HHHHHHH-------------HHhhhhH--------hcccHHHHHHHhcC--CcHHHHHHHHHH
Confidence 9999999999872211 1122222 1222222 12567788877754 233322222222
Q ss_pred HHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhhc
Q psy4020 219 LGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKS 298 (530)
Q Consensus 219 L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~ 298 (530)
..++..+. +.+=+...+|+.-|.|.+ ..++....|++.|++++++.
T Consensus 1059 -------------------F~Els~k~-n~iynlLPdil~~Ls~~~--------------l~~~~~~~vm~~li~~ikkd 1104 (1251)
T KOG0414|consen 1059 -------------------FKELSSKG-NTIYNLLPDILSRLSNGN--------------LEEESYKTVMEFLIGLIKKD 1104 (1251)
T ss_pred -------------------HHHhhhcc-cchhhhchHHHHhhccCc--------------ccchhhHHHHHHHHHHhccc
Confidence 22222221 122223455666666652 45778889999999999874
Q ss_pred CchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 299 EPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 299 d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
+-|. ..++.+.|.++.+-.+.-+..+++++..
T Consensus 1105 -erf~---~~~~~rycl~~l~~~e~~~kk~~~~f~~ 1136 (1251)
T KOG0414|consen 1105 -ERFS---ADRIERYCLSLLTTTERGSKKLKDLFTA 1136 (1251)
T ss_pred -cccc---ccccchhhhcccccchhhhhhHHHHHHH
Confidence 3343 3346667777766555566666666654
No 56
>KOG1824|consensus
Probab=96.75 E-value=0.64 Score=52.93 Aligned_cols=283 Identities=17% Similarity=0.144 Sum_probs=162.5
Q ss_pred CCchhHHHHHHHHhhccCC-----hhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCC--C
Q psy4020 38 RFTDKRIGYLGAMLLLDER-----QDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSS--N 110 (530)
Q Consensus 38 ~~~~Krl~YL~l~~~~~~~-----~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~--~ 110 (530)
+-..|-.+.|.+..+-... +|.- .++-+-++||++.+++.|=-+||++..-.+ +...|.+..-+.+. .
T Consensus 832 ~~~ikvfa~LslGElgr~~~~s~~~e~~----~~iieaf~sp~edvksAAs~ALGsl~vgnl-~~yLpfil~qi~sqpk~ 906 (1233)
T KOG1824|consen 832 SDSIKVFALLSLGELGRRKDLSPQNELK----DTIIEAFNSPSEDVKSAASYALGSLAVGNL-PKYLPFILEQIESQPKR 906 (1233)
T ss_pred chhHHHHHHhhhhhhccCCCCCcchhhH----HHHHHHcCCChHHHHHHHHHHhhhhhcCch-HhHHHHHHHHHhcchHh
Confidence 4556667777777766443 2333 267788899999999999999999886222 23334444444332 2
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCC----CCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccC
Q psy4020 111 AYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDK----NHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTET 186 (530)
Q Consensus 111 ~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~----n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~ 186 (530)
.|.-=.+..-+. -+..++.....++.+-++|... ..|. --.+-+.|.+++-.+|+ .+..-|...+.+..
T Consensus 907 QyLLLhSlkevi--~~~svd~~~~~v~~IW~lL~k~cE~~eegt-R~vvAECLGkL~l~epe---sLlpkL~~~~~S~a- 979 (1233)
T KOG1824|consen 907 QYLLLHSLKEVI--VSASVDGLKPYVEKIWALLFKHCECAEEGT-RNVVAECLGKLVLIEPE---SLLPKLKLLLRSEA- 979 (1233)
T ss_pred HHHHHHHHHHHH--HHhccchhhhhHHHHHHHHHHhcccchhhh-HHHHHHHhhhHHhCChH---HHHHHHHHHhcCCC-
Confidence 232222211111 1122333333444444444221 1122 11234667777777775 33444444443321
Q ss_pred CCCCcchhHHHHHHHHhccCCC--hHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhcc---
Q psy4020 187 SKNVGNTILYETVLSIMDIKSE--SGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLK--- 261 (530)
Q Consensus 187 ~~n~~~aV~~eai~~i~~l~~~--~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~--- 261 (530)
....+.+..|+|.-+...+. ..+.++.+.....++.+.|.++|-++|..++..+...|.++.....+++..|+
T Consensus 980 --~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eT 1057 (1233)
T KOG1824|consen 980 --SNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSET 1057 (1233)
T ss_pred --cchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhh
Confidence 11335666777655544332 23344444444455679999999999999999999899888777777766654
Q ss_pred -------------------CCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhhc--C-chhhhhhHHHHHHHHHhhCC
Q psy4020 262 -------------------DPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKS--E-PDFKAHCSSNIVLCAERFAP 319 (530)
Q Consensus 262 -------------------d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~--d-~~~~~~~i~~I~~la~k~~~ 319 (530)
|+...+|+.|.|.+|.|.+.--=..=+.+++.+++.. | .++|-..-.-..++|..-|.
T Consensus 1058 kvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~DhydiKmlt~l~l~rLa~lcPs 1137 (1233)
T KOG1824|consen 1058 KVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDHYDIKMLTFLMLARLADLCPS 1137 (1233)
T ss_pred hhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchhhHHHHHHHHHHHHHHhhCcH
Confidence 3446799999999999875321111123555555442 3 23333333334567777776
Q ss_pred CchhHHHHHHHHHHH
Q psy4020 320 NKRWHLDTLLKVLVA 334 (530)
Q Consensus 320 ~~~~~vd~Ll~lL~~ 334 (530)
.--..+|.++.=|..
T Consensus 1138 ~VlqrlD~l~EpLr~ 1152 (1233)
T KOG1824|consen 1138 AVLQRLDRLVEPLRK 1152 (1233)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666778888877775
No 57
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.66 E-value=0.78 Score=48.81 Aligned_cols=107 Identities=14% Similarity=0.060 Sum_probs=53.8
Q ss_pred cchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHH
Q psy4020 191 GNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRR 270 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~ 270 (530)
++.|.-+|++++-.+.... +...|...+.+.++.+|..++..+..+.. +..+.. +.....+++...+..
T Consensus 160 d~~Vra~A~raLG~l~~~~-----a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~~----l~~~~~~~g~~~~~~ 228 (410)
T TIGR02270 160 DALVRAAALRALGELPRRL-----SESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAWGV----CRRFQVLEGGPHRQR 228 (410)
T ss_pred CHHHHHHHHHHHHhhcccc-----chHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHHH----HHHHHhccCccHHHH
Confidence 5567777777766654321 22334444667777777777777766643 333321 112223344444443
Q ss_pred HHHHHHhccChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHH
Q psy4020 271 ALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCA 314 (530)
Q Consensus 271 aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la 314 (530)
...++-...++ .++.-|...+++ ...++..+.++|.+.
T Consensus 229 l~~~lal~~~~----~a~~~L~~ll~d--~~vr~~a~~AlG~lg 266 (410)
T TIGR02270 229 LLVLLAVAGGP----DAQAWLRELLQA--AATRREALRAVGLVG 266 (410)
T ss_pred HHHHHHhCCch----hHHHHHHHHhcC--hhhHHHHHHHHHHcC
Confidence 33333222222 444445544443 236666666666543
No 58
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.50 E-value=0.017 Score=49.27 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=74.9
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHhccChHH----HH-HHHHHHhhhccCCcHHHHHHHHHHHHhccChhh--HHH-
Q psy4020 215 AVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSA----VQ-RHRNTILECLKDPDVSIRRRALELSFALVNSAN--VRS- 286 (530)
Q Consensus 215 ~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~----~~-~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~N--v~~- 286 (530)
+++.+..++.++++.+|..++..|..+....|.. ++ .....+..++.++|..++..++..+..++.... ...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 5667888888888899999999999998765533 22 345667778889999999999999999986542 121
Q ss_pred ----HHHHHHHHhhhcCchhhhhhHHHHHHHH
Q psy4020 287 ----MMKELLIFLEKSEPDFKAHCSSNIVLCA 314 (530)
Q Consensus 287 ----Iv~eL~~yl~~~d~~~~~~~i~~I~~la 314 (530)
++..|.+++.+.+.+.++.++..+..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3566777777667778887777777665
No 59
>KOG1241|consensus
Probab=96.47 E-value=0.23 Score=55.09 Aligned_cols=235 Identities=14% Similarity=0.166 Sum_probs=153.7
Q ss_pred ChhH-HHHHHHHHHhhcCCCChhh-hhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-Chh-h
Q psy4020 56 RQDV-HLLITNSLKNDLNSSTQFV-VGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILK-VPE-L 131 (530)
Q Consensus 56 ~~e~-~~L~~Nsl~kDL~s~n~~v-r~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~-~p~-~ 131 (530)
+++. .+++-=.|++-|.+++|.. .+..=|.+ --.+|.=+.+-..+++.|.++.|+++..|+-|+..|... -|. .
T Consensus 49 ~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl--~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~ 126 (859)
T KOG1241|consen 49 SSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL--QLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQ 126 (859)
T ss_pred CcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhh
Confidence 3444 4444456677787777644 45566666 235678888889999999999999999999999998653 121 1
Q ss_pred HHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCC-Chhh-HHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhcc---C
Q psy4020 132 MEIFLPATRLLLSDKNHAIHQVKILKLLRILGKN-DVEA-SEAMNDILAQVATNTETSKNVGNTILYETVLSIMDI---K 206 (530)
Q Consensus 132 i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~-~~~~-~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l---~ 206 (530)
=++++..+.+...+..++-+.-..++.+...|.+ +|+. .+..+++|..++...... ..+++|.+.|.+++++- .
T Consensus 127 wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~-e~s~~vRLaa~~aL~nsLef~ 205 (859)
T KOG1241|consen 127 WPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKE-ETSAAVRLAALNALYNSLEFT 205 (859)
T ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhcccc-CCchhHHHHHHHHHHHHHHHH
Confidence 1234555566666666653344557777777754 6664 455677888776532111 12567999999988641 1
Q ss_pred C----ChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHH-Hh----hhccCCcHHHHHHHHHHHHh
Q psy4020 207 S----ESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNT-IL----ECLKDPDVSIRRRALELSFA 277 (530)
Q Consensus 207 ~----~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~-i~----~~l~d~d~~Ir~~aL~ll~~ 277 (530)
. +..-+.-..+..+.--.++|..+|-.++.+|.+|..-+.+.+++|... +| ...++++..|+..++|.=..
T Consensus 206 ~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWst 285 (859)
T KOG1241|consen 206 KANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWST 285 (859)
T ss_pred HHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1 111111112222333357899999999999999999888777766554 22 23457788999999999999
Q ss_pred ccChhhHHHHHHHHHHHh
Q psy4020 278 LVNSANVRSMMKELLIFL 295 (530)
Q Consensus 278 l~n~~Nv~~Iv~eL~~yl 295 (530)
+|.|++ ++.-|..+..
T Consensus 286 iceEEi--D~~~e~~e~~ 301 (859)
T KOG1241|consen 286 ICEEEI--DLAIEYGEAV 301 (859)
T ss_pred HHHHHH--HHHHHHHHHh
Confidence 998884 3444444444
No 60
>KOG1020|consensus
Probab=96.37 E-value=0.16 Score=60.20 Aligned_cols=143 Identities=15% Similarity=0.061 Sum_probs=113.8
Q ss_pred cchhHHHHHHHHhcc-CCChH---HHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHH--HHHHHHhhhccCCc
Q psy4020 191 GNTILYETVLSIMDI-KSESG---LRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQ--RHRNTILECLKDPD 264 (530)
Q Consensus 191 ~~aV~~eai~~i~~l-~~~~~---l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~--~~~~~i~~~l~d~d 264 (530)
+.-+.++.++.|..+ ....+ ......+.+..+|..+..++|--||++|..++..+|.++. ..+..+-.-+.|..
T Consensus 789 s~~~d~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Dss 868 (1692)
T KOG1020|consen 789 SRFADDDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSS 868 (1692)
T ss_pred CccccchhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccch
Confidence 344778888876532 22211 2344566677778888999999999999999999998763 34556667778889
Q ss_pred HHHHHHHHHHHHh--ccChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 265 VSIRRRALELSFA--LVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 265 ~~Ir~~aL~ll~~--l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
.++|.-|+|++.. ++.++-+.+.-+.+.+-+.+.....|..+|+-+..+|+.+| +....++.+.++|..
T Consensus 869 asVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~p-df~~i~~~cakmlrR 939 (1692)
T KOG1020|consen 869 ASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETP-DFSKIVDMCAKMLRR 939 (1692)
T ss_pred hHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHH
Confidence 9999999999984 67889899888888888888888999999999999999995 577888999998885
No 61
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.29 E-value=0.56 Score=49.86 Aligned_cols=221 Identities=16% Similarity=0.063 Sum_probs=135.5
Q ss_pred CchHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHH
Q psy4020 25 FGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVER 104 (530)
Q Consensus 25 f~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~ 104 (530)
-+...++..+....-...+........ ..++++ ++..+.+-|.++++.+|.-|.+.|+.+..+... +.+..
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~-~~~~~~----~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~----~~L~~ 124 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL-AQEDAL----DLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAE----PWLEP 124 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh-ccCChH----HHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHH----HHHHH
Confidence 355567778865544444444332222 122222 478888999999999999999999999998665 45566
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcc
Q psy4020 105 LMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNT 184 (530)
Q Consensus 105 ~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~ 184 (530)
.+.|.+|.||..++ ++..... ++ -.+.+..+|+|.++.| ....++.|..++..+. . ..|...+..
T Consensus 125 ~L~~~~p~vR~aal-~al~~r~--~~----~~~~L~~~L~d~d~~V-ra~A~raLG~l~~~~a--~----~~L~~al~d- 189 (410)
T TIGR02270 125 LLAASEPPGRAIGL-AALGAHR--HD----PGPALEAALTHEDALV-RAAALRALGELPRRLS--E----STLRLYLRD- 189 (410)
T ss_pred HhcCCChHHHHHHH-HHHHhhc--cC----hHHHHHHHhcCCCHHH-HHHHHHHHHhhccccc--h----HHHHHHHcC-
Confidence 78999999999777 4444433 22 2345667778888887 4455677777664321 1 123333332
Q ss_pred cCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCc
Q psy4020 185 ETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPD 264 (530)
Q Consensus 185 ~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d 264 (530)
.++.|...|+..+..++.. .+...+..+......-.+.. +..+..+. ..+..+ ..+...+.+++
T Consensus 190 -----~~~~VR~aA~~al~~lG~~-----~A~~~l~~~~~~~g~~~~~~-l~~~lal~-~~~~a~----~~L~~ll~d~~ 253 (410)
T TIGR02270 190 -----SDPEVRFAALEAGLLAGSR-----LAWGVCRRFQVLEGGPHRQR-LLVLLAVA-GGPDAQ----AWLRELLQAAA 253 (410)
T ss_pred -----CCHHHHHHHHHHHHHcCCH-----hHHHHHHHHHhccCccHHHH-HHHHHHhC-CchhHH----HHHHHHhcChh
Confidence 2678999999888777553 23445555544333333222 22222222 223332 33445566654
Q ss_pred HHHHHHHHHHHHhccChhhHHHH
Q psy4020 265 VSIRRRALELSFALVNSANVRSM 287 (530)
Q Consensus 265 ~~Ir~~aL~ll~~l~n~~Nv~~I 287 (530)
++.-++..+-.+.+..-+..+
T Consensus 254 --vr~~a~~AlG~lg~p~av~~L 274 (410)
T TIGR02270 254 --TRREALRAVGLVGDVEAAPWC 274 (410)
T ss_pred --hHHHHHHHHHHcCCcchHHHH
Confidence 899999999999988866644
No 62
>KOG2259|consensus
Probab=96.28 E-value=0.67 Score=50.86 Aligned_cols=261 Identities=17% Similarity=0.118 Sum_probs=159.0
Q ss_pred HHhhcCCCChhhhhHHHHHHhcCCC-hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh----------hHHhh
Q psy4020 67 LKNDLNSSTQFVVGLALCTLGAIAS-PEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPE----------LMEIF 135 (530)
Q Consensus 67 l~kDL~s~n~~vr~lALr~l~~i~~-~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~----------~i~~~ 135 (530)
+-.=..+.++-||.-|+..|-.+.+ -.+...++..-.+.+.|...-|||.|+-.+.-.-+.+|- +.+..
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~a 282 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAA 282 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHH
Confidence 3333456677788888777555543 455677888899999999999999998877766666641 22234
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhhcCCChh-----hHHHHHHHHHH----------HhhcccCCCCC----------
Q psy4020 136 LPATRLLLSDKNHAIHQVKILKLLRILGKNDVE-----ASEAMNDILAQ----------VATNTETSKNV---------- 190 (530)
Q Consensus 136 i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~-----~~~~l~~iL~~----------~l~~~~~~~n~---------- 190 (530)
...+-+.++|..-+| -+..-++|..+..-..+ ..++++.-+.+ ..++.+.++..
T Consensus 283 F~~vC~~v~D~sl~V-RV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee 361 (823)
T KOG2259|consen 283 FSSVCRAVRDRSLSV-RVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEE 361 (823)
T ss_pred HHHHHHHHhcCceee-eehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhh
Confidence 556667788877665 00111111111111110 01111110100 11122111100
Q ss_pred ------------------------cchhHHHHHHHHhccC-CChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccC
Q psy4020 191 ------------------------GNTILYETVLSIMDIK-SESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYID 245 (530)
Q Consensus 191 ------------------------~~aV~~eai~~i~~l~-~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~ 245 (530)
-.-|.-.|+-.++.+. +.|+....+...|...+++....+|.-++..|..|..+
T Consensus 362 ~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~- 440 (823)
T KOG2259|consen 362 DDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH- 440 (823)
T ss_pred ccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-
Confidence 0124444555555554 34566667778888888777778899998888888754
Q ss_pred hHHHHHHHHHHhhhccCCcHHHHHHHHHHHHh--ccChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchh
Q psy4020 246 TSAVQRHRNTILECLKDPDVSIRRRALELSFA--LVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRW 323 (530)
Q Consensus 246 p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~--l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~ 323 (530)
-.+=+.....|+.+|.|....||....++|.. +.+.+=+...+.+|+..+..-+ .=|.++...++.++.+.+. .
T Consensus 441 l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyP-qDrd~i~~cm~~iGqnH~~---l 516 (823)
T KOG2259|consen 441 LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYP-QDRDEILRCMGRIGQNHRR---L 516 (823)
T ss_pred heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCC-CCcHHHHHHHHHHhccChh---h
Confidence 22225667888999999999999888888764 3455566667788888887643 3366788888888887644 4
Q ss_pred HHHHHHHHHH
Q psy4020 324 HLDTLLKVLV 333 (530)
Q Consensus 324 ~vd~Ll~lL~ 333 (530)
.+..+-.|+.
T Consensus 517 v~s~m~rfl~ 526 (823)
T KOG2259|consen 517 VLSNMGRFLE 526 (823)
T ss_pred HHHHHHHHHH
Confidence 5555666663
No 63
>KOG1248|consensus
Probab=96.28 E-value=3.4 Score=48.39 Aligned_cols=262 Identities=16% Similarity=0.138 Sum_probs=143.4
Q ss_pred HHHHHHHhhc--cCChhHHHHHHHHHHhhcCCC---ChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCC------CHH
Q psy4020 44 IGYLGAMLLL--DERQDVHLLITNSLKNDLNSS---TQFVVGLALCTLGAIASPEMSRDLASEVERLMKSS------NAY 112 (530)
Q Consensus 44 l~YL~l~~~~--~~~~e~~~L~~Nsl~kDL~s~---n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~------~~y 112 (530)
.+|++-.+.. ..++|+..-+||+|+--++.+ ++.. -..-.+++-.... .+-....-..+ ..-
T Consensus 516 F~~la~~l~~al~~~~elr~~Ic~sL~~Lv~~n~~~~~a~--e~~e~~s~~Aknf-----L~~lfn~ytq~~~~~~~~l~ 588 (1176)
T KOG1248|consen 516 FTDLAPILGAALLKRPELRETICNSLRMLVEQNKPSSDAA--ENKEVLSNDAKNF-----LPRLFNVYTQTVAAGRKILA 588 (1176)
T ss_pred HHHHHHHHHHHHhcchHhHHHHHHHHHHHHHcCCCcchHH--HHHHHHhhhhhHH-----HHHHHHHhcCCCccccccHH
Confidence 3444444433 345566666677776666554 2222 2222333333332 22222333332 233
Q ss_pred HHHHHHHHHH-HHHhhCh-hhHHhhHHHHHHhcCCCCCcc---hHHHHHHHHHhhcCCChh-hHHHHHHHHHHHhhcccC
Q psy4020 113 IRKKAALCAY-RIILKVP-ELMEIFLPATRLLLSDKNHAI---HQVKILKLLRILGKNDVE-ASEAMNDILAQVATNTET 186 (530)
Q Consensus 113 VRK~A~la~~-ki~~~~p-~~i~~~i~~l~~lL~d~n~~V---~qi~iL~lL~~l~~~~~~-~~~~l~~iL~~~l~~~~~ 186 (530)
.|+.-+..+. ..+...| |+...+.+.+.++..+.|.++ .+..+|.++..+++.-++ ....++.+. ...+
T Consensus 589 ~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~----~~~e- 663 (1176)
T KOG1248|consen 589 SRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVD----PEFE- 663 (1176)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhh----HHhh-
Confidence 4444444444 2233333 555678888888888887777 566777777777655332 222333222 2111
Q ss_pred CCCCcchhHHHHHHHHhccCCC---hHH----HHHHHHHHHHhccCCCchhHHHHHHHHHHHhccCh----HHHHHHHHH
Q psy4020 187 SKNVGNTILYETVLSIMDIKSE---SGL----RVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDT----SAVQRHRNT 255 (530)
Q Consensus 187 ~~n~~~aV~~eai~~i~~l~~~---~~l----~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p----~~~~~~~~~ 255 (530)
++.++.+--.+-+.+-.+... ..+ ...+-+.|..-..+.+.-.|+-.|.+|..|.+.++ .++..-+..
T Consensus 664 -~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 664 -NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE 742 (1176)
T ss_pred -ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 122455655555554443221 111 22333445554566677789999999988888777 455556666
Q ss_pred HhhhccCCcHHHHHHHHHHHHhcc---------ChhhHHHHHHHHHHHhhhc--Cch--hhhhhHHHHHHHHHhhCC
Q psy4020 256 ILECLKDPDVSIRRRALELSFALV---------NSANVRSMMKELLIFLEKS--EPD--FKAHCSSNIVLCAERFAP 319 (530)
Q Consensus 256 i~~~l~d~d~~Ir~~aL~ll~~l~---------n~~Nv~~Iv~eL~~yl~~~--d~~--~~~~~i~~I~~la~k~~~ 319 (530)
++-++++.|.+-|+.|.++|+.++ ++. ...++++++.-+... ..+ .+.--|-++..+...|..
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN 818 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 776779999999999999999998 222 234555555544332 222 222226777777777753
No 64
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.21 E-value=3.1 Score=47.26 Aligned_cols=280 Identities=18% Similarity=0.204 Sum_probs=147.5
Q ss_pred HHHHhhcCCCCchhHHHHHHHHhhc--cCChhHHH--HHHHHHHhhcCCCChhhhhHHHHHHhcCCC-hhhHHH-----H
Q psy4020 29 ECLKLIASSRFTDKRIGYLGAMLLL--DERQDVHL--LITNSLKNDLNSSTQFVVGLALCTLGAIAS-PEMSRD-----L 98 (530)
Q Consensus 29 ~vikl~~S~~~~~Krl~YL~l~~~~--~~~~e~~~--L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~-~el~~~-----l 98 (530)
-.++++.+++.+..-++.-++..+. .++.+.+. =++..+.|.+.++|+..+-.|||.|.|+.. +++-.. +
T Consensus 294 ~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~Gl 373 (708)
T PF05804_consen 294 LLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGL 373 (708)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCC
Confidence 3667888888887777777766655 23333221 266778899999999999999999999984 333222 5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCC-CCCcc----------------------
Q psy4020 99 ASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSD-KNHAI---------------------- 150 (530)
Q Consensus 99 ~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d-~n~~V---------------------- 150 (530)
+|.+..++.+++ .|-.|.-.++++.. +.+.-. +.++.+.+++.. .++.+
T Consensus 374 IPkLv~LL~d~~--~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~ 450 (708)
T PF05804_consen 374 IPKLVELLKDPN--FREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMC 450 (708)
T ss_pred cHHHHHHhCCCc--hHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHH
Confidence 578888887654 34344444454433 222111 345555554433 22222
Q ss_pred ---------------hHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCCh----HH
Q psy4020 151 ---------------HQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSES----GL 211 (530)
Q Consensus 151 ---------------~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~----~l 211 (530)
---.++++++.+..+++.....+.+.+..++.-.... .+...+.||+-++-+++... .+
T Consensus 451 ~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~--~~ee~~vE~LGiLaNL~~~~ld~~~l 528 (708)
T PF05804_consen 451 EGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSG--DSEEFVVECLGILANLTIPDLDWAQL 528 (708)
T ss_pred hcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhcccCCcCHHHH
Confidence 0113456777777776555555555554443221111 25678888888888776321 12
Q ss_pred HH--HHHHHHHHhccC--CCchhHHHHHHHHHHHhccChH---HH-----HHHHHHHhhhccCCcHHHHHHHHHHHHhcc
Q psy4020 212 RV--LAVNILGRFLLN--NDKNIRYVALNTLLRTVYIDTS---AV-----QRHRNTILECLKDPDVSIRRRALELSFALV 279 (530)
Q Consensus 212 ~~--~~v~~L~~lL~s--~d~niry~aL~~L~~l~~~~p~---~~-----~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~ 279 (530)
.+ ..+..|.+.|.. .+..+..-+.-.+..++ .+|. .+ -+....++....++| .+-.+.+-.++.+.
T Consensus 529 l~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla-~d~~~A~lL~~sgli~~Li~LL~~kqeDd-E~VlQil~~f~~ll 606 (708)
T PF05804_consen 529 LQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA-SDPECAPLLAKSGLIPTLIELLNAKQEDD-EIVLQILYVFYQLL 606 (708)
T ss_pred HHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH-CCHHHHHHHHhCChHHHHHHHHHhhCchH-HHHHHHHHHHHHHH
Confidence 21 345556666642 23333333333333333 2332 11 112223333333433 44445555555543
Q ss_pred -ChhhHHHHHH--HHHHHh----hhcCchhhhhhHHHHHHHHH
Q psy4020 280 -NSANVRSMMK--ELLIFL----EKSEPDFKAHCSSNIVLCAE 315 (530)
Q Consensus 280 -n~~Nv~~Iv~--eL~~yl----~~~d~~~~~~~i~~I~~la~ 315 (530)
.+++.+.++. +...|+ .+.+.+.|+.+=.++-.+++
T Consensus 607 ~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 607 FHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred cChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4555554442 333333 44456666655555555554
No 65
>KOG1241|consensus
Probab=96.17 E-value=2.4 Score=47.45 Aligned_cols=302 Identities=14% Similarity=0.148 Sum_probs=172.2
Q ss_pred HHHHHhhcCC-------CCchhHHHHHHHHhhccCC-hhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCC-------h
Q psy4020 28 LECLKLIASS-------RFTDKRIGYLGAMLLLDER-QDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIAS-------P 92 (530)
Q Consensus 28 ~~vikl~~S~-------~~~~Krl~YL~l~~~~~~~-~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~-------~ 92 (530)
+..++++..+ +...-+.+=..+++++... .|.+-.+...++..++++|=..|-.|.-+++++-. .
T Consensus 322 P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt 401 (859)
T KOG1241|consen 322 PVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLT 401 (859)
T ss_pred HHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhh
Confidence 4455666552 2344566666667776543 45566888889999999999999999888888763 3
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH------hhHHHHHHhcCCCCCcc---hHHHHHHHH---H
Q psy4020 93 EMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME------IFLPATRLLLSDKNHAI---HQVKILKLL---R 160 (530)
Q Consensus 93 el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~------~~i~~l~~lL~d~n~~V---~qi~iL~lL---~ 160 (530)
-+++...+.+.+.+.|++-.||.+|+-+++|++...|+.+. ..+..+.+-|+| .|.| ..+.+..+. -
T Consensus 402 ~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~ 480 (859)
T KOG1241|consen 402 PIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAY 480 (859)
T ss_pred HHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999887552 223333333444 3333 122222222 1
Q ss_pred hhcCCC----hhhHHHHHHHHHHHhhcccCCC-CC--cchhHHHHHHHHhccCCCh------------------------
Q psy4020 161 ILGKND----VEASEAMNDILAQVATNTETSK-NV--GNTILYETVLSIMDIKSES------------------------ 209 (530)
Q Consensus 161 ~l~~~~----~~~~~~l~~iL~~~l~~~~~~~-n~--~~aV~~eai~~i~~l~~~~------------------------ 209 (530)
.-.+.. |.. ..+..++..++..++... |. -.+-.|||...++..+...
T Consensus 481 eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~ 559 (859)
T KOG1241|consen 481 EAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQI 559 (859)
T ss_pred HhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111211 111 234445555554433211 11 1234455554443322110
Q ss_pred ----------HH----------------------HHHHHHHHHHhccCCC----chhHHHHHHHHHHHhccChHHHHHHH
Q psy4020 210 ----------GL----------------------RVLAVNILGRFLLNND----KNIRYVALNTLLRTVYIDTSAVQRHR 253 (530)
Q Consensus 210 ----------~l----------------------~~~~v~~L~~lL~s~d----~niry~aL~~L~~l~~~~p~~~~~~~ 253 (530)
++ .....+.+.+.+.+++ ++--+.+..++..-+ ..-|..|.
T Consensus 560 l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~L---g~~F~kym 636 (859)
T KOG1241|consen 560 LSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESL---GKGFAKYM 636 (859)
T ss_pred ccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHH---hHhHHHHH
Confidence 00 0111111222222211 112222222222211 12244455
Q ss_pred HHHhhh----c-cCCcHHHHHHHHHHHHhccChh--hH----HHHHHHHHHHhhh--cCchhhhhhHHHHHHHHHhhCCC
Q psy4020 254 NTILEC----L-KDPDVSIRRRALELSFALVNSA--NV----RSMMKELLIFLEK--SEPDFKAHCSSNIVLCAERFAPN 320 (530)
Q Consensus 254 ~~i~~~----l-~d~d~~Ir~~aL~ll~~l~n~~--Nv----~~Iv~eL~~yl~~--~d~~~~~~~i~~I~~la~k~~~~ 320 (530)
..|..+ | +-.+..+..-+..+...+++.= ++ +.++..|.+.+.+ .+.++|..++...|.+|.....+
T Consensus 637 ~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~ 716 (859)
T KOG1241|consen 637 PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGAD 716 (859)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHh
Confidence 544433 3 3445678888888888887643 22 3344555555544 36778888999999999988888
Q ss_pred chhHHHHHHHHHHH
Q psy4020 321 KRWHLDTLLKVLVA 334 (530)
Q Consensus 321 ~~~~vd~Ll~lL~~ 334 (530)
++.|++..+.++..
T Consensus 717 F~~Yl~~vm~llq~ 730 (859)
T KOG1241|consen 717 FEPYLEMVMPLLQQ 730 (859)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998875
No 66
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.14 E-value=0.011 Score=38.44 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q psy4020 98 LASEVERLMKSSNAYIRKKAALCAYRIILK 127 (530)
Q Consensus 98 l~~~V~~~l~~~~~yVRK~A~la~~ki~~~ 127 (530)
+.|.+.+++.|+++.||..|+.|+..+.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 468899999999999999999999998764
No 67
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.09 E-value=0.037 Score=53.71 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=53.4
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCC------h-----hhHH
Q psy4020 28 LECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIAS------P-----EMSR 96 (530)
Q Consensus 28 ~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~------~-----el~~ 96 (530)
...++.+.+++-..+.-+.-++..+...-+=..-+....+..-++|.|+.+|..++.++..+.. + ...+
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 176 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLK 176 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHH
Confidence 3345556665555666666666655554430111224455555666666666666655554321 1 1124
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhH
Q psy4020 97 DLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFL 136 (530)
Q Consensus 97 ~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i 136 (530)
.+.+.+.+++.|++|-||+.|--|+..+++..|+..+.++
T Consensus 177 ~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 177 QLVKALVKLLSDADPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp HHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 5666666666666666666666666666666666555443
No 68
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.04 E-value=0.022 Score=42.16 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=39.9
Q ss_pred hhhhhHHHHHHhcCCC--hh----hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q psy4020 76 QFVVGLALCTLGAIAS--PE----MSRDLASEVERLMKSSNAYIRKKAALCAYRI 124 (530)
Q Consensus 76 ~~vr~lALr~l~~i~~--~e----l~~~l~~~V~~~l~~~~~yVRK~A~la~~ki 124 (530)
|.+|..|+.+|+++.. ++ ..+.+++.+.+++.|+++.||.+|+.|+.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5689999999998762 33 3467888888999999999999999998754
No 69
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.04 E-value=0.11 Score=50.29 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=86.6
Q ss_pred cchhHHHHHHHHhccC----CC-hHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHH-HHHHhhhccCCc
Q psy4020 191 GNTILYETVLSIMDIK----SE-SGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRH-RNTILECLKDPD 264 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~----~~-~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~-~~~i~~~l~d~d 264 (530)
..+|.-+|+.++-.+. .. .......+..|.+.+.++...++-.+-.+|..+....+ ...+. ...+.....+.+
T Consensus 66 Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn 144 (228)
T PF12348_consen 66 RSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKN 144 (228)
T ss_dssp ---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCC
Confidence 4567777777765442 22 22345667777777777778899999999999988655 11111 233445678889
Q ss_pred HHHHHHHHHHHHhccChhh-----------HHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhH
Q psy4020 265 VSIRRRALELSFALVNSAN-----------VRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWH 324 (530)
Q Consensus 265 ~~Ir~~aL~ll~~l~n~~N-----------v~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~ 324 (530)
+.+|..+++.+..+.+.-+ ++.+++-+...+.+.+++.|..+-..+..+...||..+++.
T Consensus 145 ~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~ 215 (228)
T PF12348_consen 145 PQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESI 215 (228)
T ss_dssp HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH---
T ss_pred HHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccc
Confidence 9999999999998876665 46688888888899999999999888888888887765444
No 70
>KOG0213|consensus
Probab=96.00 E-value=1.4 Score=49.19 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccCh-----HHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccCh---
Q psy4020 210 GLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDT-----SAVQRHRNTILECLKDPDVSIRRRALELSFALVNS--- 281 (530)
Q Consensus 210 ~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p-----~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~--- 281 (530)
.++..+-..|-..|...+|++--.+|..+..|+.... ..++.....+...|++...-|....++++..+|+.
T Consensus 837 ~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE 916 (1172)
T KOG0213|consen 837 KLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPE 916 (1172)
T ss_pred HHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcc
Confidence 3444445555566666677777666666666655331 11334445555566666666777777777776543
Q ss_pred ----hhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 282 ----ANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 282 ----~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
..|-.|.=||++-+.....++|+.++...|.+|.-..|- ..+++|++-|..
T Consensus 917 ~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq--dVLatLlnnLkv 971 (1172)
T KOG0213|consen 917 YVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ--DVLATLLNNLKV 971 (1172)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH--HHHHHHHhcchH
Confidence 567777778888777777788888888888887766442 456666665554
No 71
>KOG0414|consensus
Probab=95.98 E-value=0.036 Score=63.92 Aligned_cols=121 Identities=18% Similarity=0.105 Sum_probs=97.4
Q ss_pred HHHhh----cCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcC-CCChhhhhHHHHHHhcCC--ChhhHHHHHHHH
Q psy4020 30 CLKLI----ASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLN-SSTQFVVGLALCTLGAIA--SPEMSRDLASEV 102 (530)
Q Consensus 30 vikl~----~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~-s~n~~vr~lALr~l~~i~--~~el~~~l~~~V 102 (530)
+++.+ ..+|.++.+.+||++.-+..-+.+..--.-..|..=++ +|+|.+|+++.-.+|.+. -|.+++...+++
T Consensus 924 v~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~L 1003 (1251)
T KOG0414|consen 924 VVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHL 1003 (1251)
T ss_pred HHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHH
Confidence 56666 44567889999999998877666554433444555554 899999999999999865 699999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcc
Q psy4020 103 ERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAI 150 (530)
Q Consensus 103 ~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V 150 (530)
.+-|.|.++-|||+|++.+.+++..+-=-++..+....-+|.|.|..+
T Consensus 1004 y~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~I 1051 (1251)
T KOG0414|consen 1004 YRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEI 1051 (1251)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHH
Confidence 999999999999999999999987654445677888888899988865
No 72
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.98 E-value=0.026 Score=48.04 Aligned_cols=87 Identities=20% Similarity=0.103 Sum_probs=61.6
Q ss_pred HHHHHhhcCCCChhhhhHHHHHHhcCCC--hhh----HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH---
Q psy4020 64 TNSLKNDLNSSTQFVVGLALCTLGAIAS--PEM----SR-DLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME--- 133 (530)
Q Consensus 64 ~Nsl~kDL~s~n~~vr~lALr~l~~i~~--~el----~~-~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~--- 133 (530)
++.+.+=+.++++.+|-.|+.+++++.. ++. .+ .+.+.+.+++.++++.||+.|+.++.++....|+..+
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 4455555667778888888888888875 232 33 5677888889999999999999999999876654332
Q ss_pred --hhHHHHHHhcCCCCCcc
Q psy4020 134 --IFLPATRLLLSDKNHAI 150 (530)
Q Consensus 134 --~~i~~l~~lL~d~n~~V 150 (530)
.+++.+.+++.+.+..+
T Consensus 89 ~~g~l~~l~~~l~~~~~~~ 107 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDI 107 (120)
T ss_pred HCCChHHHHHHHhcCCHHH
Confidence 25666666666654433
No 73
>KOG1240|consensus
Probab=95.93 E-value=1.2 Score=52.20 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=58.2
Q ss_pred HHHHHHHHhhcCCCChhhhhHHHHH---Hhc-CCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhh-----
Q psy4020 61 LLITNSLKNDLNSSTQFVVGLALCT---LGA-IASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPEL----- 131 (530)
Q Consensus 61 ~L~~Nsl~kDL~s~n~~vr~lALr~---l~~-i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~----- 131 (530)
-+++.+|+.= ...+ -+-.||+. ++. +.++..++-+.|.+..++.|+.+-||-.|+.++.++....-++
T Consensus 425 s~lts~IR~l-k~~~--tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 425 SVLTSCIRAL-KTIQ--TKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHhh-hcch--hHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 3566666543 2222 23334333 333 3456667889999999999999999999999999987643221
Q ss_pred --H-HhhHHHHHHhcCCCCCc
Q psy4020 132 --M-EIFLPATRLLLSDKNHA 149 (530)
Q Consensus 132 --i-~~~i~~l~~lL~d~n~~ 149 (530)
. +=++|.+..++.|.+..
T Consensus 502 niF~eYlfP~L~~l~~d~~~~ 522 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQ 522 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccc
Confidence 1 23578999999995543
No 74
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.92 E-value=0.035 Score=44.95 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=60.8
Q ss_pred HHHhh-cCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcC
Q psy4020 30 CLKLI-ASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKS 108 (530)
Q Consensus 30 vikl~-~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~ 108 (530)
.++.+ .+++...|.-+.-++..+. +++ +.+.+.+=++|+|+.+|-.|+.+|+.+++++.. +.+.+.+.+
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~~--~~~----~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~~~----~~L~~~l~~ 73 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGELG--DPE----AIPALIELLKDEDPMVRRAAARALGRIGDPEAI----PALIKLLQD 73 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCCT--HHH----HHHHHHHHHTSSSHHHHHHHHHHHHCCHHHHTH----HHHHHHHTC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcC--CHh----HHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHH----HHHHHHHcC
Confidence 45666 7778888888777777542 223 356666777899999999999999999877644 555566666
Q ss_pred -CCHHHHHHHHHHH
Q psy4020 109 -SNAYIRKKAALCA 121 (530)
Q Consensus 109 -~~~yVRK~A~la~ 121 (530)
.+..||..|+-++
T Consensus 74 ~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 74 DDDEVVREAAAEAL 87 (88)
T ss_dssp -SSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhc
Confidence 5778899888776
No 75
>KOG2160|consensus
Probab=95.88 E-value=0.21 Score=51.05 Aligned_cols=102 Identities=23% Similarity=0.285 Sum_probs=80.9
Q ss_pred hcCCCChhhhhHHHHHHhcCC--ChhhHHHHH-----HHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHhhH-----
Q psy4020 70 DLNSSTQFVVGLALCTLGAIA--SPEMSRDLA-----SEVERLMKS-SNAYIRKKAALCAYRIILKVPELMEIFL----- 136 (530)
Q Consensus 70 DL~s~n~~vr~lALr~l~~i~--~~el~~~l~-----~~V~~~l~~-~~~yVRK~A~la~~ki~~~~p~~i~~~i----- 136 (530)
-++++++.+|.+|.+.++... +|..-+.++ +.+.+++.+ .+-.+|+||..|++.++|.+|.....|.
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~ 211 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGY 211 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCH
Confidence 678999999999999999865 565554443 455666665 4677899999999999999998887765
Q ss_pred HHHHHhcCCCCCcc-hHHHHHHHHHhhcCCChhhHH
Q psy4020 137 PATRLLLSDKNHAI-HQVKILKLLRILGKNDVEASE 171 (530)
Q Consensus 137 ~~l~~lL~d~n~~V-~qi~iL~lL~~l~~~~~~~~~ 171 (530)
..+.+.+.+.+..+ +|.+++-++..+...++...+
T Consensus 212 ~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d 247 (342)
T KOG2160|consen 212 QVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED 247 (342)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence 46888999988888 899999999988776655443
No 76
>KOG1020|consensus
Probab=95.83 E-value=4.9 Score=48.34 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=77.5
Q ss_pred HHHHhhcCCCChhhhhHHHHHHhcCCC--hhhH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHH
Q psy4020 65 NSLKNDLNSSTQFVVGLALCTLGAIAS--PEMS--RDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATR 140 (530)
Q Consensus 65 Nsl~kDL~s~n~~vr~lALr~l~~i~~--~el~--~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~ 140 (530)
+.|.--|..+-+-+|.-|||+++.|.. |.+. +.+-..|..-+.|++.-||-+|+--+.|....+||++..+.+.+.
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~ 898 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQII 898 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHH
Confidence 444445567778899999999999874 4443 567778888889999999999999999888889999999988888
Q ss_pred HhcCCCCCcchHHHHHHHHHhhcCCCh
Q psy4020 141 LLLSDKNHAIHQVKILKLLRILGKNDV 167 (530)
Q Consensus 141 ~lL~d~n~~V~qi~iL~lL~~l~~~~~ 167 (530)
+.+.|..-.| --+++|.++..|...|
T Consensus 899 erIlDtgvsV-RKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 899 ERILDTGVSV-RKRVIKILRDICEETP 924 (1692)
T ss_pred hhcCCCchhH-HHHHHHHHHHHHHhCC
Confidence 8887766665 2245566665555444
No 77
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.71 E-value=4 Score=44.39 Aligned_cols=247 Identities=16% Similarity=0.159 Sum_probs=157.5
Q ss_pred HhhcCCCCchhHHHHHHHHhhccC--ChhHHHHHHHHHHhhcCCCCh-hhhhHHHHHHhcCCChhhHHHHHHHHHHHhcC
Q psy4020 32 KLIASSRFTDKRIGYLGAMLLLDE--RQDVHLLITNSLKNDLNSSTQ-FVVGLALCTLGAIASPEMSRDLASEVERLMKS 108 (530)
Q Consensus 32 kl~~S~~~~~Krl~YL~l~~~~~~--~~e~~~L~~Nsl~kDL~s~n~-~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~ 108 (530)
+-+++.||. +-++-+. ..+.+. +++..+++-=++++.|...+| .-.|.+=|.++ ..+|.-+.+-.-.++.|.+
T Consensus 30 ~~l~~~dF~-qf~~ll~-qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~--~~~E~k~qvK~~al~aL~s 105 (858)
T COG5215 30 LELQSGDFE-QFISLLV-QVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLG--MRHESKEQVKGMALRALKS 105 (858)
T ss_pred HHhccccHH-HHHHHHH-HHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHhcC
Confidence 344555553 2333333 334443 345565566667777766655 45678888888 6678888888899999999
Q ss_pred CCHHHHHHHHHHHHHHHhh-Chh-hHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcC-CChh-hHHHHHHHHHHHhhcc
Q psy4020 109 SNAYIRKKAALCAYRIILK-VPE-LMEIFLPATRLLLSDKNHAIHQVKILKLLRILGK-NDVE-ASEAMNDILAQVATNT 184 (530)
Q Consensus 109 ~~~yVRK~A~la~~ki~~~-~p~-~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~-~~~~-~~~~l~~iL~~~l~~~ 184 (530)
+.|-.-..|+-.+..|.+. -|. .-+++...+.....|..|.-+.+.-+..+...|. .+|+ .....+.++..+....
T Consensus 106 ~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga 185 (858)
T COG5215 106 PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGA 185 (858)
T ss_pred CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhh
Confidence 9998888888777777653 121 1224455555666777776556666667766664 3563 3344455555554322
Q ss_pred cCCCCCcchhHHHHHHHHhc-c---C---CChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHh
Q psy4020 185 ETSKNVGNTILYETVLSIMD-I---K---SESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTIL 257 (530)
Q Consensus 185 ~~~~n~~~aV~~eai~~i~~-l---~---~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~ 257 (530)
.. .....+|.+.+.+++++ + . ...+-+.-..+..+..-.++|.+++-.+.-++.+|..-+.+.++.+....+
T Consensus 186 ~k-~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL 264 (858)
T COG5215 186 LK-NETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENAL 264 (858)
T ss_pred cc-cCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11267899999999875 1 1 111112222233334446789999999999999999877766665544333
Q ss_pred -----hhccCCcHHHHHHHHHHHHhccChhh
Q psy4020 258 -----ECLKDPDVSIRRRALELSFALVNSAN 283 (530)
Q Consensus 258 -----~~l~d~d~~Ir~~aL~ll~~l~n~~N 283 (530)
...++++..|+..++|.-.-+|.|++
T Consensus 265 ~alt~~~mks~nd~va~qavEfWsticeEei 295 (858)
T COG5215 265 AALTGRFMKSQNDEVAIQAVEFWSTICEEEI 295 (858)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHh
Confidence 24578888999999999888887776
No 78
>KOG4224|consensus
Probab=95.68 E-value=0.46 Score=48.67 Aligned_cols=273 Identities=15% Similarity=0.124 Sum_probs=168.8
Q ss_pred HHHhhcCCCCchhHHHHHHHHhhccCChh----HHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChh-----hHHH-HH
Q psy4020 30 CLKLIASSRFTDKRIGYLGAMLLLDERQD----VHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPE-----MSRD-LA 99 (530)
Q Consensus 30 vikl~~S~~~~~Krl~YL~l~~~~~~~~e----~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~e-----l~~~-l~ 99 (530)
+.-+.+|.+-...+.|--++..++-.... +.++-..-+...++.++-.+++.|..++.++.+-+ ++.. -.
T Consensus 90 vl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL 169 (550)
T KOG4224|consen 90 VLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGAL 169 (550)
T ss_pred HHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccch
Confidence 55588888888888888888876633221 11122223555667777889999999999988643 2222 23
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHh---hChhhHH-hhHHHHHHhcCCCCCcchHHHHHHHHHh----------hcCC
Q psy4020 100 SEVERLMKSSNAYIRKKAALCAYRIIL---KVPELME-IFLPATRLLLSDKNHAIHQVKILKLLRI----------LGKN 165 (530)
Q Consensus 100 ~~V~~~l~~~~~yVRK~A~la~~ki~~---~~p~~i~-~~i~~l~~lL~d~n~~V~qi~iL~lL~~----------l~~~ 165 (530)
.++.++.++++--||+.|.-++..+-. ....++. .-+|-+.+++...|+.| |-+.-..+.. +...
T Consensus 170 ~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dv-qyycttaisnIaVd~~~Rk~Laqa 248 (550)
T KOG4224|consen 170 EPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDV-QYYCTTAISNIAVDRRARKILAQA 248 (550)
T ss_pred hhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhH-HHHHHHHhhhhhhhHHHHHHHHhc
Confidence 456668888899999998776665533 3334443 46788899999988877 3333333322 3334
Q ss_pred ChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHH-----HHHHHHhccCCCchhHHHHHHHHHH
Q psy4020 166 DVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLA-----VNILGRFLLNNDKNIRYVALNTLLR 240 (530)
Q Consensus 166 ~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~-----v~~L~~lL~s~d~niry~aL~~L~~ 240 (530)
+|..-..+. ++.... ++-|-..|...+-.+.++.+...-+ ...+.++|.++ -...+ +.....
T Consensus 249 ep~lv~~Lv----~Lmd~~------s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~--~~pli-lasVaC 315 (550)
T KOG4224|consen 249 EPKLVPALV----DLMDDG------SDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSP--MGPLI-LASVAC 315 (550)
T ss_pred ccchHHHHH----HHHhCC------ChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCc--chhHH-HHHHHH
Confidence 444333333 333322 4457788888877776654433322 33466777432 22222 222222
Q ss_pred H--hccChH---HH--HHHHHHHhhhccC-CcHHHHHHHHHHHHhccC--hhhHHHHH-----HHHHHHhhhcCchhhhh
Q psy4020 241 T--VYIDTS---AV--QRHRNTILECLKD-PDVSIRRRALELSFALVN--SANVRSMM-----KELLIFLEKSEPDFKAH 305 (530)
Q Consensus 241 l--~~~~p~---~~--~~~~~~i~~~l~d-~d~~Ir~~aL~ll~~l~n--~~Nv~~Iv-----~eL~~yl~~~d~~~~~~ 305 (530)
| ...||- .+ +.+..-+.+.|+- ++..|+..|.+.|-.|+. +.|+..|. ..|.+.+.+.+.+|+.+
T Consensus 316 IrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqse 395 (550)
T KOG4224|consen 316 IRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSE 395 (550)
T ss_pred HhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHH
Confidence 3 233441 11 2223333444442 345699999999999985 77888775 67888888999999999
Q ss_pred hHHHHHHHHHh
Q psy4020 306 CSSNIVLCAER 316 (530)
Q Consensus 306 ~i~~I~~la~k 316 (530)
+--+|..++..
T Consensus 396 isac~a~Lal~ 406 (550)
T KOG4224|consen 396 ISACIAQLALN 406 (550)
T ss_pred HHHHHHHHHhc
Confidence 99999988753
No 79
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.61 E-value=0.091 Score=44.12 Aligned_cols=68 Identities=22% Similarity=0.236 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhh----ccCCcHHHHHHHHHHHHh
Q psy4020 209 SGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILEC----LKDPDVSIRRRALELSFA 277 (530)
Q Consensus 209 ~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~----l~d~d~~Ir~~aL~ll~~ 277 (530)
.......+.++...+.+.|..+||.+.+.|..++...+..+-+|..+||.. ..|+|..||.-| ++|-+
T Consensus 22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDR 93 (97)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHH
Confidence 344566777888888999999999999999999988776666677777753 468899998776 54443
No 80
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.59 E-value=0.73 Score=47.38 Aligned_cols=198 Identities=18% Similarity=0.171 Sum_probs=122.2
Q ss_pred HHHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHH
Q psy4020 62 LITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRL 141 (530)
Q Consensus 62 L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~ 141 (530)
-....+.+.+.++++.+|..|...++.+...+. .+.+.+.+.|.++.||..|+.++.++ .+|+.++.++..+..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~a----v~~l~~~l~d~~~~vr~~a~~aLg~~--~~~~a~~~li~~l~~ 116 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEEA----VPLLRELLSDEDPRVRDAAADALGEL--GDPEAVPPLVELLEN 116 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHHH----HHHHHHHhcCCCHHHHHHHHHHHHcc--CChhHHHHHHHHHHc
Confidence 356788888889999999999999988887744 46667789999999999999988766 455655555544443
Q ss_pred hcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHH
Q psy4020 142 LLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGR 221 (530)
Q Consensus 142 lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~ 221 (530)
|.|..|. ....+.|..+.. +.... .++.. ++.. ...+ +.-.. .+
T Consensus 117 ---d~~~~vR-~~aa~aL~~~~~--~~a~~---~l~~~-l~~~------~~~~---a~~~~-----~~------------ 160 (335)
T COG1413 117 ---DENEGVR-AAAARALGKLGD--ERALD---PLLEA-LQDE------DSGS---AAAAL-----DA------------ 160 (335)
T ss_pred ---CCcHhHH-HHHHHHHHhcCc--hhhhH---HHHHH-hccc------hhhh---hhhhc-----cc------------
Confidence 5666552 233334433332 22111 22211 1211 1111 11000 00
Q ss_pred hccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcCch
Q psy4020 222 FLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPD 301 (530)
Q Consensus 222 lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~ 301 (530)
..-++|+.+...+..+.. |..+ ..+...+.+.+..+|..+..-+..+..+. ..+...+...+.+.+..
T Consensus 161 ----~~~~~r~~a~~~l~~~~~--~~~~----~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 161 ----ALLDVRAAAAEALGELGD--PEAI----PLLIELLEDEDADVRRAAASALGQLGSEN--VEAADLLVKALSDESLE 228 (335)
T ss_pred ----hHHHHHHHHHHHHHHcCC--hhhh----HHHHHHHhCchHHHHHHHHHHHHHhhcch--hhHHHHHHHHhcCCCHH
Confidence 011577777777766643 3322 22345567777799999999999988766 56667777777776777
Q ss_pred hhhhhHHHHHHH
Q psy4020 302 FKAHCSSNIVLC 313 (530)
Q Consensus 302 ~~~~~i~~I~~l 313 (530)
.|...+.+++..
T Consensus 229 vr~~~~~~l~~~ 240 (335)
T COG1413 229 VRKAALLALGEI 240 (335)
T ss_pred HHHHHHHHhccc
Confidence 777776666543
No 81
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.58 E-value=0.053 Score=45.06 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=57.5
Q ss_pred HHHHHhhcCCCChhhhhHHHHHHhcCCC-h----hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh
Q psy4020 64 TNSLKNDLNSSTQFVVGLALCTLGAIAS-P----EMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPE 130 (530)
Q Consensus 64 ~Nsl~kDL~s~n~~vr~lALr~l~~i~~-~----el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~ 130 (530)
.+...+|++++.+.+||-||..|.++.. . .-.+.+..-....+.|.++||-=+|+-|+..+...+|+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3567789999999999999999998652 2 22467788888999999999999999999999999998
No 82
>KOG1240|consensus
Probab=95.55 E-value=0.68 Score=54.00 Aligned_cols=212 Identities=18% Similarity=0.188 Sum_probs=117.3
Q ss_pred HHHHHHHhhcCCCChhhhhHHHHHHhcCCC----------hhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChh
Q psy4020 62 LITNSLKNDLNSSTQFVVGLALCTLGAIAS----------PEMSRDLASEVERLMKS-SNAYIRKKAALCAYRIILKVPE 130 (530)
Q Consensus 62 L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~----------~el~~~l~~~V~~~l~~-~~~yVRK~A~la~~ki~~~~p~ 130 (530)
-+..-+..-++++...||+.||.+|+.+-. --+.+++.|.+..++.| ...+||=+=|-|+..+.+.
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t--- 538 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT--- 538 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH---
Confidence 477788888899999999999999987542 12348899999999999 6788888777777766542
Q ss_pred hHHhhHHHHHH-----hcCCCCCcc------------hHHHHHHHHHhhcC-CChhhHHHHHHHHHHHh-hcccCCCCCc
Q psy4020 131 LMEIFLPATRL-----LLSDKNHAI------------HQVKILKLLRILGK-NDVEASEAMNDILAQVA-TNTETSKNVG 191 (530)
Q Consensus 131 ~i~~~i~~l~~-----lL~d~n~~V------------~qi~iL~lL~~l~~-~~~~~~~~l~~iL~~~l-~~~~~~~n~~ 191 (530)
+..|++..++ ++++.|..- +...+-+....+.. .+|-.+..+++-|..+. ... +-.+
T Consensus 539 -A~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG---k~ks 614 (1431)
T KOG1240|consen 539 -AYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG---KEKS 614 (1431)
T ss_pred -HHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh---hccc
Confidence 3344433332 344433311 11111122222222 22223333322222211 100 0012
Q ss_pred chhHHHHHHHHhccCCChHH--------------------HHHHHHHHHHhccCCCchhHHHHHHHHHHHhccC---hHH
Q psy4020 192 NTILYETVLSIMDIKSESGL--------------------RVLAVNILGRFLLNNDKNIRYVALNTLLRTVYID---TSA 248 (530)
Q Consensus 192 ~aV~~eai~~i~~l~~~~~l--------------------~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~---p~~ 248 (530)
+-+++.-.-++++=. +..| -+.....|+.=|.+.+.-+---||.++.-|.+.+ ...
T Consensus 615 ND~iLshLiTfLNDk-Dw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~ 693 (1431)
T KOG1240|consen 615 NDVILSHLITFLNDK-DWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPA 693 (1431)
T ss_pred ccchHHHHHHHhcCc-cHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHH
Confidence 233333333333221 1111 1222333444445566666667777777766532 233
Q ss_pred HHHHHHHHhhhccCCcHHHHHHHHHHHHhccCh
Q psy4020 249 VQRHRNTILECLKDPDVSIRRRALELSFALVNS 281 (530)
Q Consensus 249 ~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~ 281 (530)
+.+...++..+|-.|+..||+.++.+++..++.
T Consensus 694 v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 694 VKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 444556666677899999999999999987643
No 83
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.53 E-value=1.6 Score=43.54 Aligned_cols=226 Identities=18% Similarity=0.191 Sum_probs=120.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChh-h-----HHhhHHHHHHhcCCCCCcchHHHHHHHHHhhc---CCChhhHH
Q psy4020 101 EVERLMKSSNAYIRKKAALCAYRIILKVPE-L-----MEIFLPATRLLLSDKNHAIHQVKILKLLRILG---KNDVEASE 171 (530)
Q Consensus 101 ~V~~~l~~~~~yVRK~A~la~~ki~~~~p~-~-----i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~---~~~~~~~~ 171 (530)
.+...|++.++-+|.+|..++..+....|. . +.-+++-..+.|. |+..++-. ++.+..+. ...++...
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~-l~gl~~L~~~~~~~~~~~~ 79 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPA-LKGLLALVKMKNFSPESAV 79 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHH-HHHHHHHHhCcCCChhhHH
Confidence 455678888999999999999888877663 1 2223333444453 33332222 33333332 22333333
Q ss_pred HHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCC--hHHHH---HHHHHHHHhc-cCCCchhHHHHHHHHHHHhccC
Q psy4020 172 AMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSE--SGLRV---LAVNILGRFL-LNNDKNIRYVALNTLLRTVYID 245 (530)
Q Consensus 172 ~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~--~~l~~---~~v~~L~~lL-~s~d~niry~aL~~L~~l~~~~ 245 (530)
+++..+.++..... -.-+..+.+-+.+-.+-.+ ..+.. ..+..+...+ ..+||.--.++.+.+..+.+..
T Consensus 80 ---~i~~~l~~~~~~q~-~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 80 ---KILRSLFQNVDVQS-LPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred ---HHHHHHHHhCChhh-hhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 33333333221110 0223444444433322111 12221 2223333344 3689988888888888777665
Q ss_pred hHHHHHHHHHHh---hhcc--------CCcHHHHHHHHH--HHHhc-cChhhHHHHHHHHHHHhhhcCchhhhhhHHHHH
Q psy4020 246 TSAVQRHRNTIL---ECLK--------DPDVSIRRRALE--LSFAL-VNSANVRSMMKELLIFLEKSEPDFKAHCSSNIV 311 (530)
Q Consensus 246 p~~~~~~~~~i~---~~l~--------d~d~~Ir~~aL~--ll~~l-~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~ 311 (530)
+- .++..++| .|.. +++..|.+.-|. +.--+ +++.=....+.-|++-+.......|.++.+.+.
T Consensus 156 ~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~ 233 (262)
T PF14500_consen 156 DI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLK 233 (262)
T ss_pred cc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 42 33333333 3321 112123333332 22223 355556777888888888888889999999999
Q ss_pred HHHHhhCC-CchhHHHHHHHHHHHh
Q psy4020 312 LCAERFAP-NKRWHLDTLLKVLVAN 335 (530)
Q Consensus 312 ~la~k~~~-~~~~~vd~Ll~lL~~~ 335 (530)
.|+.+|+. .-..|+..+.+-|..+
T Consensus 234 ~c~~~y~~~~~~~~~~~iw~~lk~E 258 (262)
T PF14500_consen 234 ACIENYGADSLSPHWSTIWNALKFE 258 (262)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 99999975 3456666666655543
No 84
>KOG4199|consensus
Probab=95.47 E-value=3.5 Score=42.12 Aligned_cols=287 Identities=18% Similarity=0.174 Sum_probs=153.3
Q ss_pred HHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-hhHHHHHHhcC
Q psy4020 66 SLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-IFLPATRLLLS 144 (530)
Q Consensus 66 sl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-~~i~~l~~lL~ 144 (530)
.+.+-|.+ +--.++|-|+++.=... ...++...+ +..+++.-+-++++-++.++....|++.. .-...+.++|.
T Consensus 81 ~ll~~l~d--~ck~~~A~r~la~~~ga--~~~~it~~~-la~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~ 155 (461)
T KOG4199|consen 81 ELLEQLAD--ECKKSLAHRVLAGKNGA--HDALITLLE-LAESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLA 155 (461)
T ss_pred HHHHHHHH--HHhhhHHHHHHhccCCC--cchhhhHHH-HhhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHh
Confidence 34444442 66778888888764432 112222222 46778889999999999999999999886 44555666665
Q ss_pred CCCCcc-hHHHHHHHHHhhcCCChhhHH-----HHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCCh---------
Q psy4020 145 DKNHAI-HQVKILKLLRILGKNDVEASE-----AMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSES--------- 209 (530)
Q Consensus 145 d~n~~V-~qi~iL~lL~~l~~~~~~~~~-----~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~--------- 209 (530)
++-..- +.+.-++.++.-|.......+ ...+++.+++... + ..-++.|....|.-+..+.
T Consensus 156 ~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~--g---k~~~VRel~~a~r~l~~dDDiRV~fg~a 230 (461)
T KOG4199|consen 156 LKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNRE--G---KTRTVRELYDAIRALLTDDDIRVVFGQA 230 (461)
T ss_pred cccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHccc--C---ccHHHHHHHHHHHHhcCCCceeeecchh
Confidence 542211 222334444444433222222 2234455555432 1 1125545444443322111
Q ss_pred --HHH--------HHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHH-----HHHHHHhhhccCC-c---HHHHHH
Q psy4020 210 --GLR--------VLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQ-----RHRNTILECLKDP-D---VSIRRR 270 (530)
Q Consensus 210 --~l~--------~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~-----~~~~~i~~~l~d~-d---~~Ir~~ 270 (530)
..+ ...+..+..++ ||++---.+-+|..++-++ ++.+ .=...+++|+.|. + ...-+.
T Consensus 231 h~hAr~ia~e~~l~~L~Eal~A~~---dp~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~ 306 (461)
T KOG4199|consen 231 HGHARTIAKEGILTALTEALQAGI---DPDSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKT 306 (461)
T ss_pred hHHHHHHHHhhhHHHHHHHHHccC---CccHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHH
Confidence 111 11223333333 5777766667777765432 2221 2256788898873 2 346689
Q ss_pred HHHHHHhccChhhHHHH-H-----HHHHHHhhh--cCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHHhhhhhhcc
Q psy4020 271 ALELSFALVNSANVRSM-M-----KELLIFLEK--SEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNR 342 (530)
Q Consensus 271 aL~ll~~l~n~~Nv~~I-v-----~eL~~yl~~--~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~~~~~~v~~ 342 (530)
++.+|-+++..+.++.- | +.+..-+.. .|+..-.+..-.|..+|.+-|..+...++.=..-+.-.-..---.
T Consensus 307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~ 386 (461)
T KOG4199|consen 307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV 386 (461)
T ss_pred HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH
Confidence 99999999876666543 3 233333322 366677888888889999988776666553222221100000000
Q ss_pred hhhhHHHHH-HHHHHhhcCcchHHH
Q psy4020 343 ALRDQRRAL-ELSFALVNSANVRSM 366 (530)
Q Consensus 343 a~eiq~~a~-e~~~ll~~~p~~r~~ 366 (530)
+.-+|+-|+ .++++..+..+.|..
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~ 411 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTI 411 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccch
Confidence 224555555 346666555444433
No 85
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.47 E-value=3.8 Score=45.05 Aligned_cols=103 Identities=13% Similarity=0.092 Sum_probs=77.6
Q ss_pred hHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC--ChhhHHHHHHHHHH
Q psy4020 27 QLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA--SPEMSRDLASEVER 104 (530)
Q Consensus 27 ~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~--~~el~~~l~~~V~~ 104 (530)
+-.++.... .+...||++-=++.-|+..=|++.--++|++..-+.+.+..||-.|+|.|..++ +++.+.-+..-+.+
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~Q 103 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQ 103 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHH
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHH
Confidence 445666555 468999999999999999999999999999999999999999999999999998 58999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhChh
Q psy4020 105 LMKSSNAYIRKKAALCAYRIILKVPE 130 (530)
Q Consensus 105 ~l~~~~~yVRK~A~la~~ki~~~~p~ 130 (530)
+|...++-.+..+=-++..+++.+|.
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k 129 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPK 129 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcH
Confidence 99988776665555556666666775
No 86
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.47 E-value=1.2 Score=47.51 Aligned_cols=215 Identities=16% Similarity=0.135 Sum_probs=121.2
Q ss_pred chhHHHHHHHHhhccCChhHH-----HHHHHHHHhhcCCCChhhhhHHHHHHhcCCCh----hhHHHHHHHHHHHh-cCC
Q psy4020 40 TDKRIGYLGAMLLLDERQDVH-----LLITNSLKNDLNSSTQFVVGLALCTLGAIASP----EMSRDLASEVERLM-KSS 109 (530)
Q Consensus 40 ~~Krl~YL~l~~~~~~~~e~~-----~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~----el~~~l~~~V~~~l-~~~ 109 (530)
..+++.+++...+..-+++.. -++...+.-=+++.++..|..|++.+|.+.+. +..+.+.......+ ...
T Consensus 163 ~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~ 242 (415)
T PF12460_consen 163 QQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSE 242 (415)
T ss_pred ccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccC
Confidence 678888888888775554432 23333333334566799999999999988765 23344444444444 334
Q ss_pred CHHHHHHHHHHHHHHH-----hhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChh-------------hHH
Q psy4020 110 NAYIRKKAALCAYRII-----LKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVE-------------ASE 171 (530)
Q Consensus 110 ~~yVRK~A~la~~ki~-----~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~-------------~~~ 171 (530)
.+--|..++-...-+. |.+|. ...+++.+.++|.+...|..- -+.|..+....+. .++
T Consensus 243 ~~~~~~~~~~~~~Wi~KaLv~R~~~~-~~~~~~~L~~lL~~~~~g~~a---A~~f~il~~d~~~~l~~~~~a~vklLykQ 318 (415)
T PF12460_consen 243 DSELRPQALEILIWITKALVMRGHPL-ATELLDKLLELLSSPELGQQA---AKAFGILLSDSDDVLNKENHANVKLLYKQ 318 (415)
T ss_pred CcchhHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHhCChhhHHHH---HHHHhhHhcCcHHhcCccccchhhhHHhH
Confidence 5555666665554433 34554 557888888888885544422 2333333222111 133
Q ss_pred HHHHH-HHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHH----HHHHHHHHHhccCCCchhHHHHHHHHHHHhccCh
Q psy4020 172 AMNDI-LAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR----VLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDT 246 (530)
Q Consensus 172 ~l~~i-L~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~----~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p 246 (530)
++... +-.+++.-..+.+.....-+.|.-.++.--+. .+. ......|..-|..+|++++..+|++|..++...|
T Consensus 319 R~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~-~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 319 RFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPK-SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence 33332 22222221111100112334455444442222 221 1233334444567888999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy4020 247 SAVQRHRNTILEC 259 (530)
Q Consensus 247 ~~~~~~~~~i~~~ 259 (530)
+.+.+|...++..
T Consensus 398 ~~i~~hl~sLI~~ 410 (415)
T PF12460_consen 398 ELISEHLSSLIPR 410 (415)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 87
>KOG2023|consensus
Probab=95.18 E-value=1.1 Score=49.33 Aligned_cols=190 Identities=16% Similarity=0.136 Sum_probs=107.6
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhH
Q psy4020 92 PEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVP-ELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEAS 170 (530)
Q Consensus 92 ~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p-~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~ 170 (530)
++...++-..+.+++.|++|.||-+.=.-+.-|+...- .-=++.++.+.++|...+... |--.+..|++.+...++..
T Consensus 85 ~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~-~EgA~~AL~KIcEDsa~~l 163 (885)
T KOG2023|consen 85 SEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNT-CEGAFGALQKICEDSAQFL 163 (885)
T ss_pred hHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccc-cchhHHHHHHHHhhhHHHH
Confidence 35556666666677777777777665555544443210 001234455566665544322 1122444455554433221
Q ss_pred ---------HHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccC--CChHHHHHHHHHHHH---hccCCCchhHHHHHH
Q psy4020 171 ---------EAMNDILAQVATNTETSKNVGNTILYETVLSIMDIK--SESGLRVLAVNILGR---FLLNNDKNIRYVALN 236 (530)
Q Consensus 171 ---------~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~--~~~~l~~~~v~~L~~---lL~s~d~niry~aL~ 236 (530)
+.|+.-+.+..++ .++.+.-+|+.++-++- .+..+....=+.|.. +-.+.++++|--+.+
T Consensus 164 ds~~~~rpl~~mipkfl~f~~h------~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~ 237 (885)
T KOG2023|consen 164 DSDVLTRPLNIMIPKFLQFFKH------PSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCR 237 (885)
T ss_pred hhhcccCchHHhHHHHHHHHhC------CChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 1222222223332 24445555555443221 222233222222222 225678999999999
Q ss_pred HHHHHhccChHHHHHHHHHHhhh----ccCCcHHHHHHHHHHHHhccChhhHHHHH
Q psy4020 237 TLLRTVYIDTSAVQRHRNTILEC----LKDPDVSIRRRALELSFALVNSANVRSMM 288 (530)
Q Consensus 237 ~L~~l~~~~p~~~~~~~~~i~~~----l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv 288 (530)
.+..+...+|+-+.+|...|+.. -.|.|..+...|=|...++|...-.+.++
T Consensus 238 alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L 293 (885)
T KOG2023|consen 238 ALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVL 293 (885)
T ss_pred HHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHH
Confidence 99999999999888888777643 34889999999999999999877555554
No 88
>KOG0915|consensus
Probab=95.02 E-value=3.5 Score=49.55 Aligned_cols=289 Identities=14% Similarity=0.083 Sum_probs=165.6
Q ss_pred HHHHhhcCCCCchhHHHHHHHHhhccCChh--H------HHHHHHHHHhhcCCCChhhhhHHHHHHhcCCC---------
Q psy4020 29 ECLKLIASSRFTDKRIGYLGAMLLLDERQD--V------HLLITNSLKNDLNSSTQFVVGLALCTLGAIAS--------- 91 (530)
Q Consensus 29 ~vikl~~S~~~~~Krl~YL~l~~~~~~~~e--~------~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~--------- 91 (530)
|.+..+.++-...|--.+|++.-++...+- + ..-+.=-.+.|...+--..--.|.+++++++.
T Consensus 1043 eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~ 1122 (1702)
T KOG0915|consen 1043 ELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGA 1122 (1702)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcc
Confidence 345577888889999999999998866531 1 11122233456654433333345777777542
Q ss_pred --hhhHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhChhhHH----hhHHHHHHhcCCCCCcchHHHHHHHHHhhcC
Q psy4020 92 --PEMSRDLASEVE-RLMKSSNAYIRKKAALCAYRIILKVPELME----IFLPATRLLLSDKNHAIHQVKILKLLRILGK 164 (530)
Q Consensus 92 --~el~~~l~~~V~-~~l~~~~~yVRK~A~la~~ki~~~~p~~i~----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~ 164 (530)
.+.+..+.|.+. +.+.|.-+-|||-++-.+.++.+.+|..+. ++++.+.+..+.-.|.|+-.-.+|+
T Consensus 1123 ~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~------ 1196 (1702)
T KOG0915|consen 1123 KGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL------ 1196 (1702)
T ss_pred cHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh------
Confidence 345555666655 455577899999999999999999988765 4555666666677777744333333
Q ss_pred CChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccC-CCchhHHHHHHHHHHHhc
Q psy4020 165 NDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLN-NDKNIRYVALNTLLRTVY 243 (530)
Q Consensus 165 ~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s-~d~niry~aL~~L~~l~~ 243 (530)
+....+.+.+.-.... -++=.+|++.-.++.- +..+....+..+..++.+ =.-+.|--+-.-+..+++
T Consensus 1197 -~~~e~ealDt~R~s~a---------ksspmmeTi~~ci~~i-D~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~ 1265 (1702)
T KOG0915|consen 1197 -INIETEALDTLRASAA---------KSSPMMETINKCINYI-DISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQ 1265 (1702)
T ss_pred -hhhHHHHHHHHHHhhh---------cCCcHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHH
Confidence 2222233333222222 2345778888666543 334556677777777642 223334333333444444
Q ss_pred cChHHHHHH----HHHHhhhccCCcHHHHHH---HHHHHHhccChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHh
Q psy4020 244 IDTSAVQRH----RNTILECLKDPDVSIRRR---ALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAER 316 (530)
Q Consensus 244 ~~p~~~~~~----~~~i~~~l~d~d~~Ir~~---aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k 316 (530)
+.+.-..++ ....|..++|.+.++|+. |.-.|.+...++-.+..+.++...+-..+...+...+..|..++..
T Consensus 1266 r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~ 1345 (1702)
T KOG0915|consen 1266 RLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANY 1345 (1702)
T ss_pred HhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHh
Confidence 433222222 333444567888888874 5556667778878888888777754333333334444444444443
Q ss_pred hCCCchhHHHHHHHHHHH
Q psy4020 317 FAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 317 ~~~~~~~~vd~Ll~lL~~ 334 (530)
-++..+-|-+.++.++..
T Consensus 1346 s~e~Lkn~asaILPLiFL 1363 (1702)
T KOG0915|consen 1346 SQEMLKNYASAILPLIFL 1363 (1702)
T ss_pred hHHHHHhhHHHHHHHHHH
Confidence 333344455566665544
No 89
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.00 E-value=0.093 Score=41.99 Aligned_cols=74 Identities=20% Similarity=0.409 Sum_probs=46.0
Q ss_pred CeEEEEEEEeeCCcccccceEEEEeecCceEEEeeCCCCCCCCCCCCceEEEEEEecCCCCCcceeEEEEEEEE
Q psy4020 445 SVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPPSDTNIPPGSQVTQTLRVAKANNNVQASLRMRIKVSYN 518 (530)
Q Consensus 445 ~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l~l~p~Sg~~l~~~~~itQ~~~i~~~~~~~~~~~~lr~k~~y~ 518 (530)
+...+++.++|....++.++.+.+.+|.+.+..-.|.+...|+|++..+-.+.|.-..+-......++++++|+
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~a~y~ 78 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYTVTVTARYT 78 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEEEEEEEE--
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEEEEEEEEeC
Confidence 46889999999999999999999999999998788888779999887777777722222224567778888874
No 90
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.90 E-value=0.65 Score=50.56 Aligned_cols=248 Identities=14% Similarity=0.108 Sum_probs=149.3
Q ss_pred HHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChh----hHHhhHH
Q psy4020 63 ITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSS-NAYIRKKAALCAYRIILKVPE----LMEIFLP 137 (530)
Q Consensus 63 ~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~-~~yVRK~A~la~~ki~~~~p~----~i~~~i~ 137 (530)
.+.+++-|..|.+||+|.-.=|..+-..+.-=++.+.+.+..+..++ +.--|.+.+-|+-+|.....- -+..++.
T Consensus 282 ~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ 361 (975)
T COG5181 282 SVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLK 361 (975)
T ss_pred eeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHH
Confidence 35678899999999999999998888877777788899999888886 777788877777777654321 1235778
Q ss_pred HHHHhcCCCCCcc--hHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC-C--hHHH
Q psy4020 138 ATRLLLSDKNHAI--HQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKS-E--SGLR 212 (530)
Q Consensus 138 ~l~~lL~d~n~~V--~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~-~--~~l~ 212 (530)
.+.++|.|+...| .....+..+..+. .|--.+.|..++..+-....+++...-+-.+.|+-.++-+-. + ...-
T Consensus 362 ci~~~l~D~~~~vRi~tA~alS~lae~~--~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~t 439 (975)
T COG5181 362 CISKLLKDRSRFVRIDTANALSYLAELV--GPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDT 439 (975)
T ss_pred HHHHHhhccceeeeehhHhHHHHHHHhc--CCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhH
Confidence 8889999988777 2222233333321 233345666666655443333333334445566655544322 1 1122
Q ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHHhc---cChHHH-HHHHHHHhhhccCCcHHHHHHHH---------HHHHhcc
Q psy4020 213 VLAVNILGRFLLNNDKNIRYVALNTLLRTVY---IDTSAV-QRHRNTILECLKDPDVSIRRRAL---------ELSFALV 279 (530)
Q Consensus 213 ~~~v~~L~~lL~s~d~niry~aL~~L~~l~~---~~p~~~-~~~~~~i~~~l~d~d~~Ir~~aL---------~ll~~l~ 279 (530)
+.....+.+.+.++|.+.+-..|.-...-.. ..|..+ .+....+|.|.- .|+-|. ..-.-++
T Consensus 440 re~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw-----~rr~A~dr~~~k~v~~ttvilA 514 (975)
T COG5181 440 REHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFW-----RRRSAGDRRSYKQVVLTTVILA 514 (975)
T ss_pred HHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHH-----HhhhcccccccceeehhHHHHH
Confidence 3455667777788888877766655544433 345433 333445554431 222222 2222223
Q ss_pred ChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhh
Q psy4020 280 NSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERF 317 (530)
Q Consensus 280 n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~ 317 (530)
..---..+++.+++|+.+...-||...+....++..+.
T Consensus 515 k~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~l 552 (975)
T COG5181 515 KMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRL 552 (975)
T ss_pred HHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhc
Confidence 33344567788999998877667776655555544443
No 91
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.83 E-value=0.15 Score=42.89 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=49.8
Q ss_pred ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH----hhHHHHHHhcCCCCCcc
Q psy4020 91 SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME----IFLPATRLLLSDKNHAI 150 (530)
Q Consensus 91 ~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~----~~i~~l~~lL~d~n~~V 150 (530)
..+..+.+.++|.+++.|+++-||-.|+-|++.+.+...+.+- +..+.+..++.|.|+.|
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~V 84 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENV 84 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhH
Confidence 4667789999999999999999999999999999988765443 44556667778888887
No 92
>KOG1949|consensus
Probab=94.80 E-value=4.3 Score=45.14 Aligned_cols=188 Identities=20% Similarity=0.174 Sum_probs=118.7
Q ss_pred ChhhHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHhh-Chhh----H----HhhHHHHHHhcCCCCCcchHHHHHHHHH
Q psy4020 91 SPEMSRDLA-SEVERLMKSSNAYIRKKAALCAYRIILK-VPEL----M----EIFLPATRLLLSDKNHAIHQVKILKLLR 160 (530)
Q Consensus 91 ~~el~~~l~-~~V~~~l~~~~~yVRK~A~la~~ki~~~-~p~~----i----~~~i~~l~~lL~d~n~~V~qi~iL~lL~ 160 (530)
..+|.-.+. |.+.+.|.-+|..||.+|+.-....|.. +||. + +.=...+.++|.|..|.|--..+..+.+
T Consensus 167 Veeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k 246 (1005)
T KOG1949|consen 167 VEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCK 246 (1005)
T ss_pred HHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 456655544 4555888899999999999999988864 6765 2 2234568899999999984444444333
Q ss_pred hhc---CC-Chhh-HHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhc---cCCChHHHHHHHHHHHHhccCCCchhHH
Q psy4020 161 ILG---KN-DVEA-SEAMNDILAQVATNTETSKNVGNTILYETVLSIMD---IKSESGLRVLAVNILGRFLLNNDKNIRY 232 (530)
Q Consensus 161 ~l~---~~-~~~~-~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~---l~~~~~l~~~~v~~L~~lL~s~d~niry 232 (530)
... .- .|.+ .+-|-.+...+...+ ...|.....+.+-. -.....+.+.....++-.|.++..-+|-
T Consensus 247 ~~s~fWe~iP~~i~~~ll~kI~d~~a~dt------~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRv 320 (1005)
T KOG1949|consen 247 ITSKFWEMIPPTILIDLLKKITDELAFDT------SSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRV 320 (1005)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHhhhcc------chheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHH
Confidence 221 11 1222 222223333333222 33565555555443 3334456777777888888888888999
Q ss_pred HHHHHHHHHhccCh-HHHHH-HHHHHhhhccCCcHHHHHHHHHHHHhccChhhH
Q psy4020 233 VALNTLLRTVYIDT-SAVQR-HRNTILECLKDPDVSIRRRALELSFALVNSANV 284 (530)
Q Consensus 233 ~aL~~L~~l~~~~p-~~~~~-~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv 284 (530)
...+.|.+|-.... .+..- -..+++..|..++..+.|+-+.+++..+=+.|=
T Consensus 321 A~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k 374 (1005)
T KOG1949|consen 321 AFVDMLLKIKAVRAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNK 374 (1005)
T ss_pred HHHHHHHHHHhhhhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCC
Confidence 99999988865432 22111 145666777877888999989999887766554
No 93
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.71 E-value=0.12 Score=56.80 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=96.9
Q ss_pred HHHhhcC----CCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcC-CCChhhhhHHHHHHhcCC--ChhhHHHHHHHH
Q psy4020 30 CLKLIAS----SRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLN-SSTQFVVGLALCTLGAIA--SPEMSRDLASEV 102 (530)
Q Consensus 30 vikl~~S----~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~-s~n~~vr~lALr~l~~i~--~~el~~~l~~~V 102 (530)
|.+..++ +|-++.+.+||.+.-+.--..+...---..+-.-+. +|+|.+|+.|.-.|+.+. --.+++.....+
T Consensus 897 VeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yL 976 (1128)
T COG5098 897 VEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYL 976 (1128)
T ss_pred HHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHH
Confidence 3445555 567788889998876543333222211222223333 899999999998888755 356678888889
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q psy4020 103 ERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQ 179 (530)
Q Consensus 103 ~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~ 179 (530)
.+-|.|.+..|||++.+.+.-+....-=-++.-++.+..+|.|.|.++--+ .-.++..++..|.....-++|+...
T Consensus 977 yrrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~deda~Isdm-ar~fft~~a~KdNt~yn~fidifs~ 1052 (1128)
T COG5098 977 YRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEISDM-ARHFFTQIAKKDNTMYNGFIDIFST 1052 (1128)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhccCCcchHHHH-HHHHHHHHHhcccchhhhhHHHHHH
Confidence 999999999999999999987766443335567778888888988876111 1123344455554444444454433
No 94
>KOG0168|consensus
Probab=94.59 E-value=2 Score=48.54 Aligned_cols=239 Identities=15% Similarity=0.140 Sum_probs=133.8
Q ss_pred HHHHHHhcCC----C--hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh---hChhhHH-----hhHHHHHHhcCCC
Q psy4020 81 LALCTLGAIA----S--PEMSRDLASEVERLMKSSNAYIRKKAALCAYRIIL---KVPELME-----IFLPATRLLLSDK 146 (530)
Q Consensus 81 lALr~l~~i~----~--~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~---~~p~~i~-----~~i~~l~~lL~d~ 146 (530)
-||.+.+|++ + +..+-+..|.+.++|.+.+.-+--.+++|+.|+.. ++|+.++ +++...++||.-.
T Consensus 313 ~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt 392 (1051)
T KOG0168|consen 313 VALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVT 392 (1051)
T ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcC
Confidence 4444444433 3 44566778888999998887778889999999864 5787776 5788888888765
Q ss_pred CCcc---hHHHHHHHHHhhcCCChhhHHH-----HHHHHHHHhhcccCCC--------CCcchhHHHHHHHHhccCC-Ch
Q psy4020 147 NHAI---HQVKILKLLRILGKNDVEASEA-----MNDILAQVATNTETSK--------NVGNTILYETVLSIMDIKS-ES 209 (530)
Q Consensus 147 n~~V---~qi~iL~lL~~l~~~~~~~~~~-----l~~iL~~~l~~~~~~~--------n~~~aV~~eai~~i~~l~~-~~ 209 (530)
.+.. .-+-++++|..++-..|..... +-+.+..++.....+. +..++=+||-...++.+-. .+
T Consensus 393 ~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p 472 (1051)
T KOG0168|consen 393 PTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLP 472 (1051)
T ss_pred cccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCc
Confidence 4433 3456677887777665543322 2233444443221111 1245677888887765421 11
Q ss_pred -H--------HHHHH---------------------HHHHHHhcc--CCCchh-----HHHHHHHHHHHhccChHHHHHH
Q psy4020 210 -G--------LRVLA---------------------VNILGRFLL--NNDKNI-----RYVALNTLLRTVYIDTSAVQRH 252 (530)
Q Consensus 210 -~--------l~~~~---------------------v~~L~~lL~--s~d~ni-----ry~aL~~L~~l~~~~p~~~~~~ 252 (530)
+ +..-. .+...+.+. +.|+.. +-...+.=..++...|+.++.+
T Consensus 473 ~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F 552 (1051)
T KOG0168|consen 473 VEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSF 552 (1051)
T ss_pred ccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHH
Confidence 0 00000 111222221 111111 1111122234555678888887
Q ss_pred HHHHhhhcc-----CCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhh---------cCchhhhhhHHHHHHHHHhhC
Q psy4020 253 RNTILECLK-----DPDVSIRRRALELSFALVNSANVRSMMKELLIFLEK---------SEPDFKAHCSSNIVLCAERFA 318 (530)
Q Consensus 253 ~~~i~~~l~-----d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~---------~d~~~~~~~i~~I~~la~k~~ 318 (530)
..+++..|. .-+++||.++|..|.+++-=.|.+.|..-|.+.... -|..+..-+..---.+++|||
T Consensus 553 ~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlp 632 (1051)
T KOG0168|consen 553 GKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLP 632 (1051)
T ss_pred HHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhH
Confidence 777776553 457899999999999998777766554433332211 133333333333345666766
Q ss_pred C
Q psy4020 319 P 319 (530)
Q Consensus 319 ~ 319 (530)
.
T Consensus 633 d 633 (1051)
T KOG0168|consen 633 D 633 (1051)
T ss_pred H
Confidence 5
No 95
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=94.29 E-value=5.5 Score=43.38 Aligned_cols=254 Identities=14% Similarity=0.144 Sum_probs=137.4
Q ss_pred hhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh------hHHhhHHHHHHhcCCCCCcc--
Q psy4020 79 VGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPE------LMEIFLPATRLLLSDKNHAI-- 150 (530)
Q Consensus 79 r~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~------~i~~~i~~l~~lL~d~n~~V-- 150 (530)
.|..|...+......+.+++...|.+.+.+.+..=|-.|++|...+.. -|+ ++...+|-+..+.+|.--.|
T Consensus 348 A~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~-gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ 426 (858)
T COG5215 348 ASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMH-GPCEDCLTKIVPQALPGIENEMSDSCLWVKS 426 (858)
T ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhc-CccHHHHHhhHHhhhHHHHHhcccceeehhh
Confidence 445577777788888889999999999999999999999999888764 222 23344555555555432111
Q ss_pred -------------------------------------------hHHHHHHHHHhhcCCC---hh-hHHHHHHHHHHHhhc
Q psy4020 151 -------------------------------------------HQVKILKLLRILGKND---VE-ASEAMNDILAQVATN 183 (530)
Q Consensus 151 -------------------------------------------~qi~iL~lL~~l~~~~---~~-~~~~l~~iL~~~l~~ 183 (530)
-.+....+...+.+.+ ++ ....+..++..++..
T Consensus 427 ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~ 506 (858)
T COG5215 427 TTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKG 506 (858)
T ss_pred HHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHH
Confidence 1122222322232222 11 223445566666554
Q ss_pred ccCCCCC--cchhHHHHHHHHhccCCCh--H----H-------HHHHHHHHHHhccCCC----chhHHHHHHHHHHHhcc
Q psy4020 184 TETSKNV--GNTILYETVLSIMDIKSES--G----L-------RVLAVNILGRFLLNND----KNIRYVALNTLLRTVYI 244 (530)
Q Consensus 184 ~~~~~n~--~~aV~~eai~~i~~l~~~~--~----l-------~~~~v~~L~~lL~s~d----~niry~aL~~L~~l~~~ 244 (530)
++..-|- ..+-.|+|.-+++.+.++. + . ...+++.++..|...| .+++--.+..|..++.+
T Consensus 507 t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~ 586 (858)
T COG5215 507 TELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRT 586 (858)
T ss_pred HHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4432232 2347789988887775542 1 1 1223344443332111 22332233334444444
Q ss_pred Ch---HHHHHHHHH-HhhhccCC-cHHHHHHHHHHHHhccC--hhhHHHHHHHHHHHhhh----cCchhhhhhHHHHHHH
Q psy4020 245 DT---SAVQRHRNT-ILECLKDP-DVSIRRRALELSFALVN--SANVRSMMKELLIFLEK----SEPDFKAHCSSNIVLC 313 (530)
Q Consensus 245 ~p---~~~~~~~~~-i~~~l~d~-d~~Ir~~aL~ll~~l~n--~~Nv~~Iv~eL~~yl~~----~d~~~~~~~i~~I~~l 313 (530)
.| +-+.+.... +++.+... +..+-...+.-+.+|.+ ++-.+.-+..+.-|+.+ .|..+-..++--+|.+
T Consensus 587 ~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdl 666 (858)
T COG5215 587 RRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDL 666 (858)
T ss_pred cCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 33 234443333 33455544 33444455555555555 33445555555555544 3555566777778888
Q ss_pred HHhhCCCchhHHHHHHHHHH
Q psy4020 314 AERFAPNKRWHLDTLLKVLV 333 (530)
Q Consensus 314 a~k~~~~~~~~vd~Ll~lL~ 333 (530)
|.....+..-|-|.++.-|-
T Consensus 667 antl~~df~~y~d~~ms~Lv 686 (858)
T COG5215 667 ANTLGTDFNIYADVLMSSLV 686 (858)
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 88877777777776665443
No 96
>KOG1943|consensus
Probab=94.05 E-value=3.1 Score=48.28 Aligned_cols=227 Identities=15% Similarity=0.116 Sum_probs=116.6
Q ss_pred ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHhhHHHHHHhcCCCC-Ccc--hHHHHHHHHHhhcCCC
Q psy4020 91 SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVP-ELMEIFLPATRLLLSDKN-HAI--HQVKILKLLRILGKND 166 (530)
Q Consensus 91 ~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p-~~i~~~i~~l~~lL~d~n-~~V--~qi~iL~lL~~l~~~~ 166 (530)
.|+++|.+..++...++|.+..||..||-++.|+....| ++++..+....++++--+ ++. +-+-+|--+..=+---
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 368899999999999999999999999999999998876 566777777777665433 222 2222232222222223
Q ss_pred hhhHHHHHHHHHHHhhcccCC--CCCcchhHHHHHHHHhccC--CChH----HHH-HHHHHHHHhccCCCchhHHHHHHH
Q psy4020 167 VEASEAMNDILAQVATNTETS--KNVGNTILYETVLSIMDIK--SESG----LRV-LAVNILGRFLLNNDKNIRYVALNT 237 (530)
Q Consensus 167 ~~~~~~l~~iL~~~l~~~~~~--~n~~~aV~~eai~~i~~l~--~~~~----l~~-~~v~~L~~lL~s~d~niry~aL~~ 237 (530)
|+..+.+..++..-+...... ...+..|.=.|+-.+-.+. .++. +.. .+-..|+.-+=+++-|.|+.|--.
T Consensus 415 ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 433334444443333221100 1123334333332222221 1221 222 222233333347889999999999
Q ss_pred HHHHhccChHHHHHHHHHHhhhccCCcHHHHH-HHHHHHHhcc-ChhhHHHHHHHHHHH-hhhcCchhhhhhHHHHHHHH
Q psy4020 238 LLRTVYIDTSAVQRHRNTILECLKDPDVSIRR-RALELSFALV-NSANVRSMMKELLIF-LEKSEPDFKAHCSSNIVLCA 314 (530)
Q Consensus 238 L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~-~aL~ll~~l~-n~~Nv~~Iv~eL~~y-l~~~d~~~~~~~i~~I~~la 314 (530)
+.+.+-++++. +|=..+..-.+.-....|. .=+++-..++ .+.=.+.++++|..- +.-=|...|.....++..++
T Consensus 495 lqE~VGR~~n~--p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls 572 (1133)
T KOG1943|consen 495 LQENVGRQGNF--PHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLS 572 (1133)
T ss_pred HHHHhccCCCC--CCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 99988775432 0101111111110011111 1122222222 222233444444332 22236677777777777777
Q ss_pred HhhCC
Q psy4020 315 ERFAP 319 (530)
Q Consensus 315 ~k~~~ 319 (530)
..+|+
T Consensus 573 ~~~pk 577 (1133)
T KOG1943|consen 573 LTEPK 577 (1133)
T ss_pred HhhHH
Confidence 77665
No 97
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.59 E-value=10 Score=42.26 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=68.1
Q ss_pred hHHHHHHHHhccCCChHHHHHHHHHHHHhcc---CCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHH
Q psy4020 194 ILYETVLSIMDIKSESGLRVLAVNILGRFLL---NNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRR 270 (530)
Q Consensus 194 V~~eai~~i~~l~~~~~l~~~~v~~L~~lL~---s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~ 270 (530)
...-++++|-+++... ++..+..++. ..++.+|..|+..|.+++..+|..+++....++. -.+.|..+|-.
T Consensus 462 ~~~~~LkaLGN~g~~~-----~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~-n~~e~~EvRia 535 (574)
T smart00638 462 EIQLYLKALGNAGHPS-----SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYL-NRAEPPEVRMA 535 (574)
T ss_pred heeeHHHhhhccCChh-----HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHc-CCCCChHHHHH
Confidence 3444556666655432 3445556664 2356799999999999998899988876666652 23567899999
Q ss_pred HHHHHHhccChhhHHHHHHHHHHHhhhc-Cchhhh
Q psy4020 271 ALELSFALVNSANVRSMMKELLIFLEKS-EPDFKA 304 (530)
Q Consensus 271 aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~-d~~~~~ 304 (530)
|+.+++. ++++ ..++..+..++... +.+++.
T Consensus 536 A~~~lm~-t~P~--~~~l~~ia~~l~~E~~~QV~s 567 (574)
T smart00638 536 AVLVLME-TKPS--VALLQRIAELLNKEPNLQVAS 567 (574)
T ss_pred HHHHHHh-cCCC--HHHHHHHHHHHhhcCcHHHHH
Confidence 9999998 5555 45566666666542 344443
No 98
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.42 E-value=1.7 Score=44.16 Aligned_cols=97 Identities=23% Similarity=0.323 Sum_probs=78.4
Q ss_pred HHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccC--------h-------hh
Q psy4020 219 LGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVN--------S-------AN 283 (530)
Q Consensus 219 L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n--------~-------~N 283 (530)
+..-+.++++.+|-.|+++|....-.+.+.-.+|...++.++..++..+|-.|+..++.+.- . ..
T Consensus 32 I~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 32 ILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 33445688999999999999999888888888888888888877788999999998886522 1 23
Q ss_pred HHHHHHHHHHHhhhcCchhhhhhHHHHHHHHH
Q psy4020 284 VRSMMKELLIFLEKSEPDFKAHCSSNIVLCAE 315 (530)
Q Consensus 284 v~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~ 315 (530)
...+++-+.+++.+.+++.+..++.+++++-.
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 46788888999988888999999999988654
No 99
>KOG1293|consensus
Probab=93.32 E-value=14 Score=40.95 Aligned_cols=83 Identities=23% Similarity=0.290 Sum_probs=59.3
Q ss_pred HHHHhccCC--ChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHH-----HHHH-HHHhhhccCCcHHHHHH
Q psy4020 199 VLSIMDIKS--ESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAV-----QRHR-NTILECLKDPDVSIRRR 270 (530)
Q Consensus 199 i~~i~~l~~--~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~-----~~~~-~~i~~~l~d~d~~Ir~~ 270 (530)
++..+++++ +.-+....++.+..++.+.|+|+|-.+++.|..+.-...+.+ .+.- ..+..+.+|+|..|...
T Consensus 444 ~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq 523 (678)
T KOG1293|consen 444 CNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQ 523 (678)
T ss_pred HHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHH
Confidence 344556654 233444678888899999999999999999988876543322 2221 23444568999999999
Q ss_pred HHHHHHhccCh
Q psy4020 271 ALELSFALVNS 281 (530)
Q Consensus 271 aL~ll~~l~n~ 281 (530)
++.++-+++..
T Consensus 524 ~fqllRNl~c~ 534 (678)
T KOG1293|consen 524 CFQLLRNLTCN 534 (678)
T ss_pred HHHHHHHhhcC
Confidence 99999998874
No 100
>KOG4653|consensus
Probab=93.32 E-value=12 Score=42.84 Aligned_cols=218 Identities=17% Similarity=0.173 Sum_probs=123.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-Ch-hhH--HhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHH
Q psy4020 97 DLASEVERLMKSSNAYIRKKAALCAYRIILK-VP-ELM--EIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEA 172 (530)
Q Consensus 97 ~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~-~p-~~i--~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~ 172 (530)
+........+.|+-+.+|-.|+.-+.|++++ .+ .++ +..+....+.|.|.|+.| -...++.+..+|...|+ +.
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdedsyv-yLnaI~gv~~Lcevy~e--~i 803 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYV-YLNAIRGVVSLCEVYPE--DI 803 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCcee-eHHHHHHHHHHHHhcch--hh
Confidence 4455666677888899999999999999983 22 222 467888889999999988 23446655566644332 22
Q ss_pred HHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCC--hHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccCh----
Q psy4020 173 MNDILAQVATNTETSKNVGNTILYETVLSIMDIKSE--SGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDT---- 246 (530)
Q Consensus 173 l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~--~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p---- 246 (530)
+-+..+...+.+...+...-..+=||+--++.-..+ .+.....++...+-+.++|...|...+.++..+++...
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vs 883 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVS 883 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhh
Confidence 333444444433221111223445665433321111 22223333333333445667779999999999887543
Q ss_pred HHHHHHHHHHhhhcc-CCcHHHHHHHHHHHHhccChhh----------HHHHHHHHHHHhhhcCch-hh---hhhHHHHH
Q psy4020 247 SAVQRHRNTILECLK-DPDVSIRRRALELSFALVNSAN----------VRSMMKELLIFLEKSEPD-FK---AHCSSNIV 311 (530)
Q Consensus 247 ~~~~~~~~~i~~~l~-d~d~~Ir~~aL~ll~~l~n~~N----------v~~Iv~eL~~yl~~~d~~-~~---~~~i~~I~ 311 (530)
+.|-+....|+.... |+..-+||-|..++-.+-+..- ..+...++..|++..|.+ +| ...+..|-
T Consensus 884 d~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 884 DFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 233333333443333 5567899999999887665221 113445666666654444 33 33444444
Q ss_pred HHHHhh
Q psy4020 312 LCAERF 317 (530)
Q Consensus 312 ~la~k~ 317 (530)
...++|
T Consensus 964 a~l~n~ 969 (982)
T KOG4653|consen 964 AALEND 969 (982)
T ss_pred HHHHhc
Confidence 444444
No 101
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.23 E-value=7.7 Score=40.80 Aligned_cols=239 Identities=13% Similarity=0.071 Sum_probs=117.4
Q ss_pred cCCCCchhHHHHHHHHhhccCC---h------hHHHHHHHHHHhhcCC-------CChhhhhHHHHHHhcCC-ChhhH--
Q psy4020 35 ASSRFTDKRIGYLGAMLLLDER---Q------DVHLLITNSLKNDLNS-------STQFVVGLALCTLGAIA-SPEMS-- 95 (530)
Q Consensus 35 ~S~~~~~Krl~YL~l~~~~~~~---~------e~~~L~~Nsl~kDL~s-------~n~~vr~lALr~l~~i~-~~el~-- 95 (530)
++.+-+.|.=+|+.+...++.. | +-+-+.+..+++|+.+ .+..+..-|||+++.+- .|+++
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~ 82 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVST 82 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhh
Confidence 5667777888899888776433 2 2356889999999987 35567788999999854 45554
Q ss_pred ------HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHH-hhHHHHHHhcC---C-CCCcchHHHHHHHHHhhc
Q psy4020 96 ------RDLASEVERLMKSS-NAYIRKKAALCAYRIILKVPELME-IFLPATRLLLS---D-KNHAIHQVKILKLLRILG 163 (530)
Q Consensus 96 ------~~l~~~V~~~l~~~-~~yVRK~A~la~~ki~~~~p~~i~-~~i~~l~~lL~---d-~n~~V~qi~iL~lL~~l~ 163 (530)
..++.+....+.++ .|=.--++.+.+.+.-+..|..+. .....+...+. + -....+...-|.+++++.
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll 162 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLL 162 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Confidence 33444445555444 222222333444444344444332 23333333332 2 222224555566666666
Q ss_pred CCChhh-----HHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHh-------------ccCC-ChHHHHHHHHHHHHhcc
Q psy4020 164 KNDVEA-----SEAMNDILAQVATNTETSKNVGNTILYETVLSIM-------------DIKS-ESGLRVLAVNILGRFLL 224 (530)
Q Consensus 164 ~~~~~~-----~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~-------------~l~~-~~~l~~~~v~~L~~lL~ 224 (530)
..-|+. ..-+-.++..++.....-+....++..++.+++- +-.. +..+.....+.|..++.
T Consensus 163 ~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~ 242 (372)
T PF12231_consen 163 SQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIK 242 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHh
Confidence 555542 1122233444333211001112233334433221 1000 01344445556666665
Q ss_pred CCCchhHHHHHHH-HHHHhcc----ChHHHHHHHHHHhhhccCCcHHHHHHHHH
Q psy4020 225 NNDKNIRYVALNT-LLRTVYI----DTSAVQRHRNTILECLKDPDVSIRRRALE 273 (530)
Q Consensus 225 s~d~niry~aL~~-L~~l~~~----~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ 273 (530)
+++...--.-+.. +..+... +-+.+..-......|++++|+.+|..|+.
T Consensus 243 ~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~ 296 (372)
T PF12231_consen 243 SKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFK 296 (372)
T ss_pred CcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHH
Confidence 5333322221222 2222221 12334444444556888888888888876
No 102
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=93.22 E-value=0.42 Score=43.02 Aligned_cols=71 Identities=17% Similarity=0.376 Sum_probs=56.0
Q ss_pred eCCCcEEEEEeecCCC--CCCeEEEEEEEeeCCcccccceEEEEee-cCceEEEeeCCCCCCCCCCCCceEEEEE
Q psy4020 427 DNHGVVINLLLDSQTP--GDSVTIVTMQATNENLTLVSDFLFQAAV-PKTFQLQMLPPSDTNIPPGSQVTQTLRV 498 (530)
Q Consensus 427 ~~~~l~i~~~~~~~~~--~~~~~~~~~~~~n~~~~~i~~~~fq~AV-pK~~~l~l~p~Sg~~l~~~~~itQ~~~i 498 (530)
..+||.+++.|.|.+- .+.-+.|.+.|+|++..+|+|++.---- |.+++++=.|+-+. |+|++.+|=.|-|
T Consensus 65 ~G~GL~v~Y~F~RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~-L~pg~s~t~~lgI 138 (145)
T PF14796_consen 65 NGKGLSVEYRFSRQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIES-LEPGASVTVSLGI 138 (145)
T ss_pred CCCceeEEEEEccCCcCCCCCcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccc-cCCCCeEEEEEEE
Confidence 6889999999999743 3456889999999999999999764433 55888888777766 8887777766655
No 103
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.15 E-value=1.5 Score=49.15 Aligned_cols=208 Identities=13% Similarity=0.081 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHhhcCCCChhhhhHHHHHHhc---CCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHh
Q psy4020 58 DVHLLITNSLKNDLNSSTQFVVGLALCTLGA---IASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEI 134 (530)
Q Consensus 58 e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~---i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~ 134 (530)
+-+.++.+.|+++=-++.+.. .+|..+.. -.++++++.+..-++.--...++++|.+|++++..+.+++-..-+.
T Consensus 395 ~av~~i~~~I~~~~~~~~ea~--~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~ 472 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTDDEAA--QLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDS 472 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHHHH--HHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHcCCCCHHHHH--HHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccc
Confidence 334455566666322222322 23333332 3456666655555544434467899999999988886642111111
Q ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhH----HHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChH
Q psy4020 135 FLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEAS----EAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESG 210 (530)
Q Consensus 135 ~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~----~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~ 210 (530)
+ .+.++ ...... +.+.+.+....+.. +.--..-++++|-+++..
T Consensus 473 ~--------~~~~~----------------~~~~~~~~~~~~l~~~l~~~~~~~------~~~~~~~~LkaLgN~g~~-- 520 (618)
T PF01347_consen 473 A--------EFCDP----------------CSRCIIEKYVPYLEQELKEAVSRG------DEEEKIVYLKALGNLGHP-- 520 (618)
T ss_dssp --------------------------------SS--GGGTHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHT-G--
T ss_pred c--------ccccc----------------cchhhHHHHHHHHHHHHHHHhhcc------CHHHHHHHHHHhhccCCc--
Confidence 1 00000 011111 11222222111111 223344455555555432
Q ss_pred HHHHHHHHHHHhccCC---CchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHH
Q psy4020 211 LRVLAVNILGRFLLNN---DKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSM 287 (530)
Q Consensus 211 l~~~~v~~L~~lL~s~---d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~I 287 (530)
.++..|..++.+. +..+|..|+..|.+++...|+.+.+....|+.= ...|..||-.|+.+|+. ++++ ..+
T Consensus 521 ---~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n-~~e~~EvRiaA~~~lm~-~~P~--~~~ 593 (618)
T PF01347_consen 521 ---ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMN-TTEDPEVRIAAYLILMR-CNPS--PSV 593 (618)
T ss_dssp ---GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH--TTS-HHHHHHHHHHHHH-T-----HHH
T ss_pred ---hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcC-CCCChhHHHHHHHHHHh-cCCC--HHH
Confidence 2455666777544 678999999999999888898777666666532 24467899999999988 6666 666
Q ss_pred HHHHHHHhhhc-Cchhhhhh
Q psy4020 288 MKELLIFLEKS-EPDFKAHC 306 (530)
Q Consensus 288 v~eL~~yl~~~-d~~~~~~~ 306 (530)
++.+..++... +.+++.-+
T Consensus 594 l~~i~~~l~~E~~~QV~sfv 613 (618)
T PF01347_consen 594 LQRIAQSLWNEPSNQVASFV 613 (618)
T ss_dssp HHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHhhCchHHHHHHH
Confidence 77777777543 34444433
No 104
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.05 E-value=2.5 Score=42.92 Aligned_cols=60 Identities=25% Similarity=0.195 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHH
Q psy4020 98 LASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKL 158 (530)
Q Consensus 98 l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~l 158 (530)
+..-|...+.+.++.||+.|+-|+.-..-.+++...++++.+...+... +..+++..++.
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~-~~~v~~~al~~ 87 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKD-DEEVKITALKA 87 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 3355558999999999999999998888888888888888777777443 33334433333
No 105
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.77 E-value=0.95 Score=42.75 Aligned_cols=69 Identities=23% Similarity=0.099 Sum_probs=60.1
Q ss_pred HHHHhhcCCCChhhhhHHHHHHhcCCChhhHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH
Q psy4020 65 NSLKNDLNSSTQFVVGLALCTLGAIASPEMSRD--LASEVERLMKSSNAYIRKKAALCAYRIILKVPELME 133 (530)
Q Consensus 65 Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~--l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~ 133 (530)
+.+.+-+.+++..+|-.|++.+..+....++.+ .+|.+..+..|+++++|++|.-.+-.++.++|++++
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 345556678999999999999999887777654 679999999999999999999999999999999886
No 106
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.71 E-value=11 Score=41.27 Aligned_cols=220 Identities=16% Similarity=0.131 Sum_probs=113.4
Q ss_pred hHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC------C---hhhHHHHHHHHHHHhcCCCHH
Q psy4020 42 KRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA------S---PEMSRDLASEVERLMKSSNAY 112 (530)
Q Consensus 42 Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~------~---~el~~~l~~~V~~~l~~~~~y 112 (530)
|.++-|.-+.+.+.=.+.++=++|++.-== .||.+-.--|+++..+- + .++++....++.+.+.+++..
T Consensus 29 k~~a~l~~~~t~~~f~~~flr~vn~IL~~K--k~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~ 106 (885)
T COG5218 29 KSLAELMEMLTAHEFSEEFLRVVNTILACK--KNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKK 106 (885)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhccc--cCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchh
Confidence 344455555555555555666777764322 23333333344443322 2 457888888999999999999
Q ss_pred HHHHHHHHHHHHHhhChh----hHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCC
Q psy4020 113 IRKKAALCAYRIILKVPE----LMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSK 188 (530)
Q Consensus 113 VRK~A~la~~ki~~~~p~----~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~ 188 (530)
||++.+--+..+.....+ +...++..+.+.+-|+.+.| -...+..|.+|...+-........++..++++-+
T Consensus 107 VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~V-R~eAv~~L~~~Qe~~~neen~~~n~l~~~vqnDP--- 182 (885)
T COG5218 107 VRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAV-RREAVKVLCYYQEMELNEENRIVNLLKDIVQNDP--- 182 (885)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCc---
Confidence 999977666665544333 33456777777788888877 2233445555542211112222334444445421
Q ss_pred CCcchhHHHHHHHHhccCCC--hHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHH
Q psy4020 189 NVGNTILYETVLSIMDIKSE--SGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVS 266 (530)
Q Consensus 189 n~~~aV~~eai~~i~~l~~~--~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~ 266 (530)
+.-|...|..-|. .+++ |-..+.|- .-+-.|-|.+--+.|-++.......+.+|..-+.-.+.|.+.+
T Consensus 183 --S~EVRr~allni~-vdnsT~p~IlERar-------Dv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~s 252 (885)
T COG5218 183 --SDEVRRLALLNIS-VDNSTYPCILERAR-------DVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDREFS 252 (885)
T ss_pred --HHHHHHHHHHHee-eCCCcchhHHHHhh-------hhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcchhhhhh
Confidence 2224333332221 1111 21112111 1123445555555555554332223344444333457788888
Q ss_pred HHHHHHHHHHh
Q psy4020 267 IRRRALELSFA 277 (530)
Q Consensus 267 Ir~~aL~ll~~ 277 (530)
+|.-+.+.+..
T Consensus 253 v~~a~~d~ia~ 263 (885)
T COG5218 253 VKGALVDAIAS 263 (885)
T ss_pred HHHHHHHHHHH
Confidence 88887776653
No 107
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=92.65 E-value=14 Score=40.84 Aligned_cols=292 Identities=13% Similarity=0.069 Sum_probs=165.6
Q ss_pred HHHH-HhhcCCCCchhHHHHHHHHhhccCChhHHH-----HHHHHHHhh----cCC--CChhhhhHHHHHHhcCC-Chhh
Q psy4020 28 LECL-KLIASSRFTDKRIGYLGAMLLLDERQDVHL-----LITNSLKND----LNS--STQFVVGLALCTLGAIA-SPEM 94 (530)
Q Consensus 28 ~~vi-kl~~S~~~~~Krl~YL~l~~~~~~~~e~~~-----L~~Nsl~kD----L~s--~n~~vr~lALr~l~~i~-~~el 94 (530)
++|+ ..+.|+|-+.|+..-+....+.....+..- .++-.|.+- ... +.--..-++--.+++.. ++
T Consensus 443 m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~-- 520 (975)
T COG5181 443 MEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDP-- 520 (975)
T ss_pred HHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCCh--
Confidence 4444 689999999999999999998865543211 111111111 000 00011112333333332 33
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh------hhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhc-----
Q psy4020 95 SRDLASEVERLMKSSNAYIRKKAALCAYRIILKVP------ELMEIFLPATRLLLSDKNHAIHQVKILKLLRILG----- 163 (530)
Q Consensus 95 ~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p------~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~----- 163 (530)
.+.+-|...+.|...--||-++-++.|++..-| .+.+.+++.+-..+.+.+..+.- |+..+....
T Consensus 521 --~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~--il~~f~tv~vsl~~ 596 (975)
T COG5181 521 --RVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGL--ILPCFSTVLVSLEF 596 (975)
T ss_pred --HHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccE--EEecccceeeehhh
Confidence 455666677888753449999999999998644 23345666665566555543310 011111100
Q ss_pred CCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccC------CChHHHHHHHHHHHHhccCCCchhHHHHHHH
Q psy4020 164 KNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIK------SESGLRVLAVNILGRFLLNNDKNIRYVALNT 237 (530)
Q Consensus 164 ~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~------~~~~l~~~~v~~L~~lL~s~d~niry~aL~~ 237 (530)
+-.|-.+...-.+|.. +. |..+-|...|+.+.-.+. .+......+-+.|-..|...+|++--.+|..
T Consensus 597 r~kp~l~~ivStiL~~-L~------~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~A 669 (975)
T COG5181 597 RGKPHLSMIVSTILKL-LR------SKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKA 669 (975)
T ss_pred ccCcchHHHHHHHHHH-hc------CCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHH
Confidence 1112222222222222 11 123445555555432221 1334445555666666777788888888888
Q ss_pred HHHHhccCh-H----HHHHHHHHHhhhccCCcHHHHHHHHHHHHhccC-------hhhHHHHHHHHHHHhhhcCchhhhh
Q psy4020 238 LLRTVYIDT-S----AVQRHRNTILECLKDPDVSIRRRALELSFALVN-------SANVRSMMKELLIFLEKSEPDFKAH 305 (530)
Q Consensus 238 L~~l~~~~p-~----~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n-------~~Nv~~Iv~eL~~yl~~~d~~~~~~ 305 (530)
+..|...+. . .+..-...+...|++...-|.-..++++..+|. ...|-.|.=||.+-+...+.++|+.
T Consensus 670 i~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~ 749 (975)
T COG5181 670 ICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRN 749 (975)
T ss_pred HHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 877765432 1 123334444555666666666677777777653 4568888889999998889999999
Q ss_pred hHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 306 CSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 306 ~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
+....|-+++-..|- ..+++|++-|..
T Consensus 750 A~~tfG~Is~aiGPq--dvL~~LlnnLkv 776 (975)
T COG5181 750 ATETFGCISRAIGPQ--DVLDILLNNLKV 776 (975)
T ss_pred hhhhhhhHHhhcCHH--HHHHHHHhcchH
Confidence 999999988877552 567777776654
No 108
>KOG4224|consensus
Probab=92.25 E-value=5.2 Score=41.31 Aligned_cols=238 Identities=17% Similarity=0.150 Sum_probs=144.5
Q ss_pred CCCChhhhhHHHHHHhcCCCh-hhHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--C----hhhHHhhHHHH
Q psy4020 72 NSSTQFVVGLALCTLGAIASP-EMSRD-----LASEVERLMKSSNAYIRKKAALCAYRIILK--V----PELMEIFLPAT 139 (530)
Q Consensus 72 ~s~n~~vr~lALr~l~~i~~~-el~~~-----l~~~V~~~l~~~~~yVRK~A~la~~ki~~~--~----p~~i~~~i~~l 139 (530)
++.+.-++-.|+-.|.++... |--+. -.|.+..++.+.++.||-.+..++..|--. . .+.-+++++.+
T Consensus 177 kskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~L 256 (550)
T KOG4224|consen 177 KSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPAL 256 (550)
T ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHH
Confidence 456667777888777776642 22222 346677889999999999888887766421 1 11123588899
Q ss_pred HHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHH----HHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC---ChHHH
Q psy4020 140 RLLLSDKNHAIHQVKILKLLRILGKNDVEASEAM----NDILAQVATNTETSKNVGNTILYETVLSIMDIKS---ESGLR 212 (530)
Q Consensus 140 ~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l----~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~---~~~l~ 212 (530)
.+++.|.++.| |+..--.|+.+...+.-..+.. +..+..++++. .--.+.+.+-||-+++- +..++
T Consensus 257 v~Lmd~~s~kv-kcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~------~~plilasVaCIrnisihplNe~lI 329 (550)
T KOG4224|consen 257 VDLMDDGSDKV-KCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSP------MGPLILASVACIRNISIHPLNEVLI 329 (550)
T ss_pred HHHHhCCChHH-HHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCc------chhHHHHHHHHHhhcccccCcccce
Confidence 99999988877 3322333444443322111100 11233333321 12356677777755442 22221
Q ss_pred --HHHHHHHHHhccCCCch-hHHHHHHHHHHHhccC---hHHHH--HHHHHHhhhccCCcHHHHHHHHHHHHhccChhhH
Q psy4020 213 --VLAVNILGRFLLNNDKN-IRYVALNTLLRTVYID---TSAVQ--RHRNTILECLKDPDVSIRRRALELSFALVNSANV 284 (530)
Q Consensus 213 --~~~v~~L~~lL~s~d~n-iry~aL~~L~~l~~~~---p~~~~--~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv 284 (530)
.....+|.++|.-+|++ ++.-+.++|..++..+ ...+. .-......++.|.+.+++.+.--.+..|+=.+|-
T Consensus 330 ~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~ 409 (550)
T KOG4224|consen 330 ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND 409 (550)
T ss_pred ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence 12346788999877776 9999999998887633 22221 2244555567788899998877777777666665
Q ss_pred HHHH------HHHHHHhhhcCchhhhhhHHHHHHHHHh
Q psy4020 285 RSMM------KELLIFLEKSEPDFKAHCSSNIVLCAER 316 (530)
Q Consensus 285 ~~Iv------~eL~~yl~~~d~~~~~~~i~~I~~la~k 316 (530)
+.-+ +-|..+..+...|++..+..+++.+++.
T Consensus 410 k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 410 KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 5322 3444555555788888888888888764
No 109
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=92.08 E-value=0.97 Score=43.18 Aligned_cols=134 Identities=22% Similarity=0.173 Sum_probs=80.7
Q ss_pred HHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCCh--hhhhHHHHHHhcCCChhhHHHHHHHHHHHhc
Q psy4020 30 CLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQ--FVVGLALCTLGAIASPEMSRDLASEVERLMK 107 (530)
Q Consensus 30 vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~--~vr~lALr~l~~i~~~el~~~l~~~V~~~l~ 107 (530)
+-.|..+..++.|-+|++.+....+...+. ....+.+-+.+-+. .+=++|-+.++.+.... +.+.+.+.+.+.
T Consensus 56 ~~~L~~~~~~E~~~la~~il~~~~~~~~~~---~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W~~ 130 (213)
T PF08713_consen 56 ADELWESGYREERYLALLILDKRRKKLTEE---DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALELLEKWAK 130 (213)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCGGG--HH---HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHhHHHhhhhhHH---HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHHHHHHHh
Confidence 445666666666666666665443222111 23344444433221 22233333344332111 345677778889
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHH
Q psy4020 108 SSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASE 171 (530)
Q Consensus 108 ~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~ 171 (530)
|.++++||.|+.+..+.++. +-.+.++..+..++.|.+..| |..+=-+|+.++..+|+...
T Consensus 131 s~~~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~v-q~ai~w~L~~~~~~~~~~v~ 191 (213)
T PF08713_consen 131 SDNEWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYV-QKAIGWALREIGKKDPDEVL 191 (213)
T ss_dssp CSSHHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHH-HHHHHHHHHHHCTT-HHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHH-HHHHHHHHHHHHHhCHHHHH
Confidence 99999999999999887766 445567777777777777665 77778889999998886543
No 110
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=91.48 E-value=9.3 Score=39.11 Aligned_cols=174 Identities=17% Similarity=0.201 Sum_probs=96.3
Q ss_pred hcCCCChhhhhHHHHHHhcCCC----hhh----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh------hChhhHHhh
Q psy4020 70 DLNSSTQFVVGLALCTLGAIAS----PEM----SRDLASEVERLMKSSNAYIRKKAALCAYRIIL------KVPELMEIF 135 (530)
Q Consensus 70 DL~s~n~~vr~lALr~l~~i~~----~el----~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~------~~p~~i~~~ 135 (530)
++.+.+...|-.||+.+.++-. ++. ...+...+.++++...+-=+.-|+-++.-+.- ...++.+.+
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~ 130 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEEL 130 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Confidence 3455667777788777776542 233 35567788888877665333334333222222 234566678
Q ss_pred HHHHHHhcCCCCCcc-h---HHHHHHHHHhhcCCChhhHHHHHHHHHHHh----hcccCC-----CCCcchhHHHHHHH-
Q psy4020 136 LPATRLLLSDKNHAI-H---QVKILKLLRILGKNDVEASEAMNDILAQVA----TNTETS-----KNVGNTILYETVLS- 201 (530)
Q Consensus 136 i~~l~~lL~d~n~~V-~---qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l----~~~~~~-----~n~~~aV~~eai~~- 201 (530)
.+.+...+.|...++ . .+..|-++..++-.+++..+..++.+..+. ...+.. ...+.+|+-.|+..
T Consensus 131 ~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW 210 (309)
T PF05004_consen 131 KPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAW 210 (309)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHH
Confidence 888888888876554 1 223445555556666665553333333221 111110 00123455555553
Q ss_pred --HhccCCC---hHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhc
Q psy4020 202 --IMDIKSE---SGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVY 243 (530)
Q Consensus 202 --i~~l~~~---~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~ 243 (530)
++..-.. .......+..|..+|.++|.++|..|=++|..+..
T Consensus 211 ~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 211 ALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3322222 23344567778888888889999998888877754
No 111
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.19 E-value=13 Score=41.63 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=61.2
Q ss_pred HHHHhhcCCCCchhHHHHHHHHhhc---cCChhHHH-------HHHHHHHhhcCCCChhhhhHHHHHHhcCCC-----hh
Q psy4020 29 ECLKLIASSRFTDKRIGYLGAMLLL---DERQDVHL-------LITNSLKNDLNSSTQFVVGLALCTLGAIAS-----PE 93 (530)
Q Consensus 29 ~vikl~~S~~~~~Krl~YL~l~~~~---~~~~e~~~-------L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~-----~e 93 (530)
+.++|+.|.+|.+|-..-=.+..+. ..+++.+- -.+--+..-+.+.+||.|-=||..+.+|.+ +.
T Consensus 303 ~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~ 382 (1128)
T COG5098 303 HFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVG 382 (1128)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccc
Confidence 4666777777777655443333332 11221110 112233334567788888888777777653 22
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh
Q psy4020 94 MSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPE 130 (530)
Q Consensus 94 l~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~ 130 (530)
--..+...|.+++.|++..|||+|+--+.++.-++|=
T Consensus 383 ~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 383 RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence 2366777777888888888888887777777766663
No 112
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=91.17 E-value=5.6 Score=40.69 Aligned_cols=208 Identities=18% Similarity=0.129 Sum_probs=127.3
Q ss_pred HHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHH-----HHHhhcCCCChhhhhHHHHHHhcCCChh------hHHH-
Q psy4020 30 CLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITN-----SLKNDLNSSTQFVVGLALCTLGAIASPE------MSRD- 97 (530)
Q Consensus 30 vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~N-----sl~kDL~s~n~~vr~lALr~l~~i~~~e------l~~~- 97 (530)
.-||+-|-|.+.--=+|-+++.+.+...|-.--+.+ -+..-|.|++-.+..-|||.+++|.+-. +++.
T Consensus 248 L~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G 327 (526)
T COG5064 248 LAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCG 327 (526)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecc
Confidence 347888988888888888888877766554333333 2555678899999999999999998522 2222
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHh-----hHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHH
Q psy4020 98 LASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEI-----FLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEA 172 (530)
Q Consensus 98 l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~-----~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~ 172 (530)
..+....+|.++...+||-|+-++..|-.-.-+-+.- ++|.+..+|+. +
T Consensus 328 ~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~----------------a---------- 381 (526)
T COG5064 328 ALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSS----------------A---------- 381 (526)
T ss_pred cHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHH----------------H----------
Confidence 4566777899998899999998887764433332221 12222211111 0
Q ss_pred HHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC----ChHHH-----HHHHHHHHHhccCCCchhHHHHHHHHHHHhc
Q psy4020 173 MNDILAQVATNTETSKNVGNTILYETVLSIMDIKS----ESGLR-----VLAVNILGRFLLNNDKNIRYVALNTLLRTVY 243 (530)
Q Consensus 173 l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~----~~~l~-----~~~v~~L~~lL~s~d~niry~aL~~L~~l~~ 243 (530)
..-+--||+.+|.+..+ .|+.+ +.++++|+.+|.-.|+-+--++|+.+..++.
T Consensus 382 ------------------e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 382 ------------------EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred ------------------HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 11133355555554432 13222 2466789999876666566666777666553
Q ss_pred c----------ChHHHHH------HHHHHhhhccCCcHHHHHHHHHHHHhccCh
Q psy4020 244 I----------DTSAVQR------HRNTILECLKDPDVSIRRRALELSFALVNS 281 (530)
Q Consensus 244 ~----------~p~~~~~------~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~ 281 (530)
. +++.-.. -...|..|-++.|..|-.+|-.|+-+.-.+
T Consensus 444 ~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFge 497 (526)
T COG5064 444 VGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGE 497 (526)
T ss_pred hhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHccc
Confidence 1 1222122 234567777777888888888877765433
No 113
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.07 E-value=5.5 Score=36.74 Aligned_cols=69 Identities=19% Similarity=0.075 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccC-hHHHHHHHHHH----hhhcc-CCcHHHHHHHHHHHHhc
Q psy4020 210 GLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYID-TSAVQRHRNTI----LECLK-DPDVSIRRRALELSFAL 278 (530)
Q Consensus 210 ~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~-p~~~~~~~~~i----~~~l~-d~d~~Ir~~aL~ll~~l 278 (530)
......+.++..+|.++++.-|+.|+..+..+++.. ++.|.+|-... +..|. +++..++..++..+..+
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 345566778889999999999999999999999886 78886555443 34444 34566777776666554
No 114
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=91.03 E-value=6.6 Score=40.19 Aligned_cols=278 Identities=15% Similarity=0.104 Sum_probs=167.4
Q ss_pred hHHHHHhhcCCCCchhHH-HHHHHHhhccCChh---HHH--HHHHHHHhhc-CCCC---hhhhhHHHHHHhcCCChhh--
Q psy4020 27 QLECLKLIASSRFTDKRI-GYLGAMLLLDERQD---VHL--LITNSLKNDL-NSST---QFVVGLALCTLGAIASPEM-- 94 (530)
Q Consensus 27 ~~~vikl~~S~~~~~Krl-~YL~l~~~~~~~~e---~~~--L~~Nsl~kDL-~s~n---~~vr~lALr~l~~i~~~el-- 94 (530)
+++.++-+-|+|++..-= .|=+=+.+..+.+. ..+ =++.-|..-+ ++.+ ++-.+.||.-+++=.+...
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkv 152 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV 152 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEE
Confidence 355677777888776544 46666666655421 111 1222233333 2222 3556777777766333222
Q ss_pred -H-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCCCCCcchHHHHHH----HHHhhc
Q psy4020 95 -S-RDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSDKNHAIHQVKILK----LLRILG 163 (530)
Q Consensus 95 -~-~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d~n~~V~qi~iL~----lL~~l~ 163 (530)
+ -..+|-..++|.+++..||--|+-|+..+.-..+..-+ ..++.+..++.+.-.. +.++| .|..+|
T Consensus 153 Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~---ismlRn~TWtLSNlc 229 (526)
T COG5064 153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIH---ISMLRNATWTLSNLC 229 (526)
T ss_pred EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccch---HHHHHHhHHHHHHhh
Confidence 2 23567788999999999999999999988665443222 2345555555543332 23343 344555
Q ss_pred CC-Ch----hhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCCh-HHHHH-----HHHHHHHhccCCCchhHH
Q psy4020 164 KN-DV----EASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSES-GLRVL-----AVNILGRFLLNNDKNIRY 232 (530)
Q Consensus 164 ~~-~~----~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~-~l~~~-----~v~~L~~lL~s~d~niry 232 (530)
+. +| .....-..+|..++... ..-|+..|+.+|.+++.-+ +-... +..+|..+|.+.+.+++-
T Consensus 230 RGknP~P~w~~isqalpiL~KLiys~------D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt 303 (526)
T COG5064 230 RGKNPPPDWSNISQALPILAKLIYSR------DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT 303 (526)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHhhc------CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC
Confidence 43 22 12234456777776543 5679999999998886532 22222 235688888899999999
Q ss_pred HHHHHHHHHhccCh---HHHH--HHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHH---HH-----HHHHHHhhhcC
Q psy4020 233 VALNTLLRTVYIDT---SAVQ--RHRNTILECLKDPDVSIRRRALELSFALVNSANVRS---MM-----KELLIFLEKSE 299 (530)
Q Consensus 233 ~aL~~L~~l~~~~p---~~~~--~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~---Iv-----~eL~~yl~~~d 299 (530)
-+|+.+..|+.-.- .++- .....+..+|.++-..||+.+-=.+.++. ..|.+. ++ .-|.+-+...+
T Consensus 304 PalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNIT-AGnteqiqavid~nliPpLi~lls~ae 382 (526)
T COG5064 304 PALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT-AGNTEQIQAVIDANLIPPLIHLLSSAE 382 (526)
T ss_pred HHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccc-cCCHHHHHHHHhcccchHHHHHHHHHH
Confidence 99999999886321 2221 12333444577776789999877777643 344443 33 34555566667
Q ss_pred chhhhhhHHHHHHHH
Q psy4020 300 PDFKAHCSSNIVLCA 314 (530)
Q Consensus 300 ~~~~~~~i~~I~~la 314 (530)
.-.|.+++=+|..+.
T Consensus 383 ~k~kKEACWAisNat 397 (526)
T COG5064 383 YKIKKEACWAISNAT 397 (526)
T ss_pred HHHHHHHHHHHHhhh
Confidence 778889998888765
No 115
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.79 E-value=1.2 Score=36.91 Aligned_cols=72 Identities=19% Similarity=0.111 Sum_probs=31.0
Q ss_pred hccCCCchhHHHHHHHHHHHhccCh-HH--HHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Q psy4020 222 FLLNNDKNIRYVALNTLLRTVYIDT-SA--VQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIF 294 (530)
Q Consensus 222 lL~s~d~niry~aL~~L~~l~~~~p-~~--~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~y 294 (530)
.|.++.+-+|--||..|.+++.... .. +..-..-++..++|+|.+|=..|+..+..||+.. =+.++..|.+.
T Consensus 11 ~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~-p~~vl~~L~~~ 85 (92)
T PF10363_consen 11 DLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH-PDEVLPILLDE 85 (92)
T ss_pred HccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC-hHHHHHHHHHH
Confidence 3344444455555555555554322 11 1111222223445555555555555555555433 12344444443
No 116
>KOG0211|consensus
Probab=90.69 E-value=7.1 Score=44.68 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=62.6
Q ss_pred CCchhHHHHHHHHHHHhccCh-HHHHHH-HHHHhhhccCCcHHHHHHHHHHHHh---ccChhhHHHHHHHHHHHhhhc-C
Q psy4020 226 NDKNIRYVALNTLLRTVYIDT-SAVQRH-RNTILECLKDPDVSIRRRALELSFA---LVNSANVRSMMKELLIFLEKS-E 299 (530)
Q Consensus 226 ~d~niry~aL~~L~~l~~~~p-~~~~~~-~~~i~~~l~d~d~~Ir~~aL~ll~~---l~n~~Nv~~Iv~eL~~yl~~~-d 299 (530)
...-.|...+.++..++.... +++.++ ...+..+..|+.+.||-.++..+.. +...+-.+..+..+++++... |
T Consensus 569 ~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~ 648 (759)
T KOG0211|consen 569 DNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQE 648 (759)
T ss_pred cccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcc
Confidence 335578899999998887643 344444 4555567788888999888877765 456677777787888888653 3
Q ss_pred chhhhhhHHHHH--HHHHhhCC
Q psy4020 300 PDFKAHCSSNIV--LCAERFAP 319 (530)
Q Consensus 300 ~~~~~~~i~~I~--~la~k~~~ 319 (530)
.+.|-.++.+.+ .++.+|.+
T Consensus 649 ~dvr~~a~~a~~~i~l~~~~~~ 670 (759)
T KOG0211|consen 649 LDVRYRAILAFGSIELSRLESS 670 (759)
T ss_pred cchhHHHHHHHHHHHHHHHhhh
Confidence 444444444444 45566654
No 117
>KOG1525|consensus
Probab=90.18 E-value=33 Score=41.64 Aligned_cols=249 Identities=14% Similarity=0.090 Sum_probs=138.6
Q ss_pred hccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCC------hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q psy4020 52 LLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIAS------PEMSRDLASEVERLMKSSNAYIRKKAALCAYRII 125 (530)
Q Consensus 52 ~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~------~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~ 125 (530)
++...|++..-++..|..-|.+.++.+|--|...+|.+-. .+--+++...-..-+.|.++-||=+++-+.-+++
T Consensus 249 L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l 328 (1266)
T KOG1525|consen 249 LWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCL 328 (1266)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHH
Confidence 4456677777888899999999999998888888877542 1334566667777778899999999998888888
Q ss_pred hhChhhHHhhHHHHHHhcCCCCCcc--------hHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHH
Q psy4020 126 LKVPELMEIFLPATRLLLSDKNHAI--------HQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYE 197 (530)
Q Consensus 126 ~~~p~~i~~~i~~l~~lL~d~n~~V--------~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~e 197 (530)
..+|+..+.....+.-...|.|+.+ .++.+-+.-..+. + . ++.++...+.. .-.-|..+
T Consensus 329 ~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~---~---~-ll~~~~eR~rD------Kk~~VR~~ 395 (1266)
T KOG1525|consen 329 LNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYI---P---L-LLKLVAERLRD------KKIKVRKQ 395 (1266)
T ss_pred hcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhh---H---H-HHHHHHHHHhh------hhHHHHHH
Confidence 8888888754443333333333322 1111111111110 0 1 22222211111 13456666
Q ss_pred HHHHHhccCCC---------h---HHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcH
Q psy4020 198 TVLSIMDIKSE---------S---GLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDV 265 (530)
Q Consensus 198 ai~~i~~l~~~---------~---~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~ 265 (530)
|++.+.++..+ . .-..-+-+.|..++..++-+.|..+-+.+.....-++--.+.-....+.++.+-|
T Consensus 396 Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D- 474 (1266)
T KOG1525|consen 396 AMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLD- 474 (1266)
T ss_pred HHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhccc-
Confidence 66665544221 0 0011223457777766767777554455544444444333433444455555444
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHHHHHHhhhc----CchhhhhhHHHHHHHHHhhCC
Q psy4020 266 SIRRRALELSFALVNSANVRSMMKELLIFLEKS----EPDFKAHCSSNIVLCAERFAP 319 (530)
Q Consensus 266 ~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~----d~~~~~~~i~~I~~la~k~~~ 319 (530)
-+..++++.+.+ ....+-+++.+|+.-. ..+-..++-..|..++..+|.
T Consensus 475 ~~a~kaf~~i~~-----~q~~ls~~vr~~I~~~k~~~~d~~~k~i~~~i~~i~~~lpD 527 (1266)
T KOG1525|consen 475 LNAHKAFNEILK-----RQSRLSEEVRDYITLSKTPNTDDSMKKIFSKIVKISENLPD 527 (1266)
T ss_pred HhhhhHHHHHHH-----HHHHHHHHHHHHhccccCCCccHhHHHHHHHHHHHHHhcCC
Confidence 245555555543 2244445556666432 222455666777778888763
No 118
>KOG1992|consensus
Probab=89.71 E-value=19 Score=41.05 Aligned_cols=185 Identities=17% Similarity=0.154 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHhhcCCC----ChhhhhHHHHHHhcCC---ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--
Q psy4020 58 DVHLLITNSLKNDLNSS----TQFVVGLALCTLGAIA---SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKV-- 128 (530)
Q Consensus 58 e~~~L~~Nsl~kDL~s~----n~~vr~lALr~l~~i~---~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~-- 128 (530)
|+.-..+|.+.-||.++ +|..++-|++.+--.| .++.+-.+.+.+.+.|...++-|.+-|+.|+=|+....
T Consensus 452 dv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 452 DVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred cHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 45667889999999884 5789999999887666 47777788899999999999999999999999987542
Q ss_pred -------hhhHHhh----HHHHHHhcCCC----CCcchHHHHHHHHHhh----cCCChhhHHHHHHHHHHHhhcccCCCC
Q psy4020 129 -------PELMEIF----LPATRLLLSDK----NHAIHQVKILKLLRIL----GKNDVEASEAMNDILAQVATNTETSKN 189 (530)
Q Consensus 129 -------p~~i~~~----i~~l~~lL~d~----n~~V~qi~iL~lL~~l----~~~~~~~~~~l~~iL~~~l~~~~~~~n 189 (530)
|+.+..+ +..+.+.++-. |.- +.-.|+|.+..+ .+.-|.....+.+++..+.+|.. +.
T Consensus 532 ~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~Eney-lmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs--~P 608 (960)
T KOG1992|consen 532 SNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEY-LMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPS--NP 608 (960)
T ss_pred ccccccchhhcchHHHHHHHHHHHhccCCcccccHH-HHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCC--Cc
Confidence 2222222 22222222221 222 222445555443 24455556677778877776652 22
Q ss_pred CcchhHHHHHHHHhccCC--ChHH----HHHHHHHHHHhccCCCchhHHHHHHHHHHHhccC
Q psy4020 190 VGNTILYETVLSIMDIKS--ESGL----RVLAVNILGRFLLNNDKNIRYVALNTLLRTVYID 245 (530)
Q Consensus 190 ~~~aV~~eai~~i~~l~~--~~~l----~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~ 245 (530)
..+.-+||++-+++.... ++.. .......++..|...=.+.-=.++..+..++..+
T Consensus 609 ~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~ 670 (960)
T KOG1992|consen 609 QFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHS 670 (960)
T ss_pred hhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356789999998876543 3222 2222333344443333344445666776666543
No 119
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.60 E-value=7.6 Score=42.51 Aligned_cols=136 Identities=14% Similarity=0.104 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhcc--CCCh---HHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhc
Q psy4020 169 ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDI--KSES---GLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVY 243 (530)
Q Consensus 169 ~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l--~~~~---~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~ 243 (530)
..+.+.+.+..++.-.-. ++...=+..-+.+++.+ +.+| ++.......+.+.+.++|.++||-.|+.|..+..
T Consensus 43 f~~~flr~vn~IL~~Kk~--~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d 120 (885)
T COG5218 43 FSEEFLRVVNTILACKKN--PSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSD 120 (885)
T ss_pred hHHHHHHHHHHhhccccC--CCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHH
Confidence 345666777776654311 12223334444455543 3333 3555666677788889999999999999988875
Q ss_pred cC----hHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhc----cChhhHHHHHHHHHHHhhh-cCchhhhhhHH
Q psy4020 244 ID----TSAVQRHRNTILECLKDPDVSIRRRALELSFAL----VNSANVRSMMKELLIFLEK-SEPDFKAHCSS 308 (530)
Q Consensus 244 ~~----p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l----~n~~Nv~~Iv~eL~~yl~~-~d~~~~~~~i~ 308 (530)
.- -.++......+...+.|..+.+|+.|+-.|... .|++|- +++-|+.-++. ...|.|+.+..
T Consensus 121 ~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~--~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 121 VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR--IVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH--HHHHHHHHHhcCcHHHHHHHHHH
Confidence 32 234455556666677788889999999988875 355543 23333333332 23456655533
No 120
>KOG2025|consensus
Probab=89.31 E-value=43 Score=37.78 Aligned_cols=58 Identities=9% Similarity=0.045 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh----ChhhHHhhHHHHHHhcCCCCCcc
Q psy4020 93 EMSRDLASEVERLMKSSNAYIRKKAALCAYRIILK----VPELMEIFLPATRLLLSDKNHAI 150 (530)
Q Consensus 93 el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~----~p~~i~~~i~~l~~lL~d~n~~V 150 (530)
+++..+..++.+...+++-.||++.+.-+.++... +-++...+...+...+.|+.|.|
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~V 142 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNV 142 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchH
Confidence 45666667777777777777777766655555442 12233345555666666666666
No 121
>KOG2038|consensus
Probab=89.24 E-value=39 Score=38.36 Aligned_cols=225 Identities=16% Similarity=0.114 Sum_probs=129.8
Q ss_pred CCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC--ChhhHHHHHHHHHHHhcCCCHHH
Q psy4020 36 SSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA--SPEMSRDLASEVERLMKSSNAYI 113 (530)
Q Consensus 36 S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~--~~el~~~l~~~V~~~l~~~~~yV 113 (530)
+++...|++..-|+..++..--.-.+-+.-.+-+| +=+.++.-||.++..+- -||==..+...+..-|.|+..-+
T Consensus 281 ~~~~~~k~Ll~WyfE~~LK~ly~rfievLe~lS~D---~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKi 357 (988)
T KOG2038|consen 281 NKRLRDKILLMWYFEHELKILYFRFIEVLEELSKD---PLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKI 357 (988)
T ss_pred ccccccceehHHHHHHHHHHHHHHHHHHHHHHccc---cHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhh
Confidence 77778888887777777654333333444444444 44789999999988765 47777889999999999999999
Q ss_pred HHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcc-hHHHHHHHHH--hhcCCChhhHHHHHHHHHHHhh----ccc-
Q psy4020 114 RKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAI-HQVKILKLLR--ILGKNDVEASEAMNDILAQVAT----NTE- 185 (530)
Q Consensus 114 RK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V-~qi~iL~lL~--~l~~~~~~~~~~l~~iL~~~l~----~~~- 185 (530)
-.+|..-+..+...+|.+---.+..+..++-..|.+- .+.+.+-+|. .+...+.+.+..++++-..+.. ..+
T Consensus 358 askAsylL~~L~~~HPnMK~Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lFk~l~~~~~~ 437 (988)
T KOG2038|consen 358 ASKASYLLEGLLAKHPNMKIVVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLFKTLVGKKDK 437 (988)
T ss_pred hhhHHHHHHHHHhhCCcceeehHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999865556666666665555432 2222222232 2334444444444443332211 100
Q ss_pred -CC---------CCC----------------cchhHHHHHHHHh-----ccCCChHHHHHHHHHHHHhccCCCchhHHHH
Q psy4020 186 -TS---------KNV----------------GNTILYETVLSIM-----DIKSESGLRVLAVNILGRFLLNNDKNIRYVA 234 (530)
Q Consensus 186 -~~---------~n~----------------~~aV~~eai~~i~-----~l~~~~~l~~~~v~~L~~lL~s~d~niry~a 234 (530)
.. +.. -++=++.|+.+=. ......+....-++.|-.+..+.+.|+-.-+
T Consensus 438 d~~k~~k~~~k~kks~k~~k~e~~~~e~~~e~nsrllSAlLTGvNRAfPfaq~~ddk~~~~~~tLFkl~HssNFNTsVQa 517 (988)
T KOG2038|consen 438 DNRKDDKGAAKKKKSNKKDKKEEVSTESPIELNSRLLSALLTGVNRAFPFAQTADDKLEEQMKTLFKLTHSSNFNTSVQA 517 (988)
T ss_pred hhhhcccchhhcccccccchhhhhcccchhhhhHHHHHHHHhcccccCCcccCchHHHHHHhHHHHHHHhhcccchhHHH
Confidence 00 000 1122333332211 1112222333345556666666777777777
Q ss_pred HHHHHHHhccChHHHHHHHHHHhhhccCC
Q psy4020 235 LNTLLRTVYIDTSAVQRHRNTILECLKDP 263 (530)
Q Consensus 235 L~~L~~l~~~~p~~~~~~~~~i~~~l~d~ 263 (530)
|-.|.++...+--+-.+|...+.+-|-|+
T Consensus 518 LmLlfQvs~~~~~vSDRyY~aLY~kLLdP 546 (988)
T KOG2038|consen 518 LMLLFQVSKKNDYVSDRYYRALYRKLLDP 546 (988)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhcCc
Confidence 76666665544434455555555544454
No 122
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=89.06 E-value=0.72 Score=44.07 Aligned_cols=72 Identities=24% Similarity=0.230 Sum_probs=60.4
Q ss_pred HHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHH
Q psy4020 67 LKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPA 138 (530)
Q Consensus 67 l~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~ 138 (530)
+.+=+.|+|++.|-.|+-++......+-.+.+...+..++.|++.||||...-++..+++++|+.+..|+..
T Consensus 125 ~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 125 LEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 333456899999999998887777667778899999999999999999999999999999999999988865
No 123
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=88.80 E-value=10 Score=34.95 Aligned_cols=133 Identities=17% Similarity=0.131 Sum_probs=79.1
Q ss_pred ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhH----HhhHHHHHHhcCCCCCcc---hHHHHHHHHHhh
Q psy4020 91 SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKV-PELM----EIFLPATRLLLSDKNHAI---HQVKILKLLRIL 162 (530)
Q Consensus 91 ~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~-p~~i----~~~i~~l~~lL~d~n~~V---~qi~iL~lL~~l 162 (530)
.......+...+.+++.+++++-|..++.-+....+.. +|.+ ..|+..+...|.+.++.. ..+..+.-+-.+
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 45667788888999999999999998777776677765 6766 258888887777755432 111111111111
Q ss_pred cCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHh
Q psy4020 163 GKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTV 242 (530)
Q Consensus 163 ~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~ 242 (530)
...-|+ ...|.+ .|. ....+..+..++.. ....-.+|+.|..+.
T Consensus 99 ~~~~p~-------------------------l~Rei~--------tp~-l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 99 IRGKPT-------------------------LTREIA--------TPN-LPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred hcCCCc-------------------------hHHHHh--------hcc-HHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 111111 111111 011 11223333344322 556678899999999
Q ss_pred ccChHHHHHHHHHHhhh
Q psy4020 243 YIDTSAVQRHRNTILEC 259 (530)
Q Consensus 243 ~~~p~~~~~~~~~i~~~ 259 (530)
..||..|.+|..++...
T Consensus 143 ~~~ptt~rp~~~ki~~~ 159 (165)
T PF08167_consen 143 PHHPTTFRPFANKIESA 159 (165)
T ss_pred HHCCccccchHHHHHHH
Confidence 99999888887776543
No 124
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.52 E-value=1.1 Score=39.00 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=50.3
Q ss_pred HHHHHHHhc-cCCCchhHHHHHHHHHHHhccChH---HHHH--HHHHHhhhccCCcHHHHHHHHHHHHhcc
Q psy4020 215 AVNILGRFL-LNNDKNIRYVALNTLLRTVYIDTS---AVQR--HRNTILECLKDPDVSIRRRALELSFALV 279 (530)
Q Consensus 215 ~v~~L~~lL-~s~d~niry~aL~~L~~l~~~~p~---~~~~--~~~~i~~~l~d~d~~Ir~~aL~ll~~l~ 279 (530)
++..|..+| .+.|+.+--+|+.-|..++..+|. ++++ ....++.++.++|+.||..||-.+.++.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 455677777 456888999999999999998885 3432 3567889999999999999999888765
No 125
>KOG2025|consensus
Probab=88.33 E-value=6.6 Score=43.82 Aligned_cols=87 Identities=14% Similarity=0.131 Sum_probs=42.1
Q ss_pred HHHHHHHHhhcCCChh---hHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC-----ChHHHHHHHHHHHHhcc
Q psy4020 153 VKILKLLRILGKNDVE---ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKS-----ESGLRVLAVNILGRFLL 224 (530)
Q Consensus 153 i~iL~lL~~l~~~~~~---~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~-----~~~l~~~~v~~L~~lL~ 224 (530)
-++++++.++...=|+ ..+....++..++..++. ....|.|-+...|-.+.. +.++.......+..-|.
T Consensus 60 dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Es---kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTES---KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccC---cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh
Confidence 3566666665432111 112222333344444442 245666666665543322 23344444444444444
Q ss_pred CCCchhHHHHHHHHHHHh
Q psy4020 225 NNDKNIRYVALNTLLRTV 242 (530)
Q Consensus 225 s~d~niry~aL~~L~~l~ 242 (530)
++.|++|.-|+-.|.++-
T Consensus 137 Drep~VRiqAv~aLsrlQ 154 (892)
T KOG2025|consen 137 DREPNVRIQAVLALSRLQ 154 (892)
T ss_pred ccCchHHHHHHHHHHHHh
Confidence 666677766666666654
No 126
>KOG0915|consensus
Probab=87.91 E-value=24 Score=42.89 Aligned_cols=250 Identities=15% Similarity=0.164 Sum_probs=146.8
Q ss_pred CCCChhhhhHHHHHHhc-------CCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh-----hHHhhHHHH
Q psy4020 72 NSSTQFVVGLALCTLGA-------IASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPE-----LMEIFLPAT 139 (530)
Q Consensus 72 ~s~n~~vr~lALr~l~~-------i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~-----~i~~~i~~l 139 (530)
-+|++-|++ |...+=+ -...+...++..++...+.++..-||-.+++|+.-+.+-.|. .++++...+
T Consensus 1008 yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~ 1086 (1702)
T KOG0915|consen 1008 YDPDKKVQD-AMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAA 1086 (1702)
T ss_pred cCCcHHHHH-HHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 377877774 3333322 223456678888889999999999999999999999986552 122233333
Q ss_pred HHhcCCCCCcc--hHHHHHHHHHhhc----C-CChhhHHHHHHHHHH-HhhcccCCCCCcchhHHHHHHHHhccCCC-hH
Q psy4020 140 RLLLSDKNHAI--HQVKILKLLRILG----K-NDVEASEAMNDILAQ-VATNTETSKNVGNTILYETVLSIMDIKSE-SG 210 (530)
Q Consensus 140 ~~lL~d~n~~V--~qi~iL~lL~~l~----~-~~~~~~~~l~~iL~~-~l~~~~~~~n~~~aV~~eai~~i~~l~~~-~~ 210 (530)
.....|-..+| .--+..+.+.+++ - .++.-.++..+.+-+ ++...-.+ .-++|.--|+.+++++... +.
T Consensus 1087 fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims--~v~evr~~si~tl~dl~Kssg~ 1164 (1702)
T KOG0915|consen 1087 FRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMS--KVNEVRRFSIGTLMDLAKSSGK 1164 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCccc--chHHHHHHHHHHHHHHHHhchh
Confidence 33344444445 2223344444443 2 223233444444433 33333222 2567888999999987532 22
Q ss_pred HHH----HHHHHHHHhccC-CCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHH
Q psy4020 211 LRV----LAVNILGRFLLN-NDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVR 285 (530)
Q Consensus 211 l~~----~~v~~L~~lL~s-~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~ 285 (530)
..+ ..+-.|++..+. .+.-+-|++++. .....+.+..-+..+- ++.+ --.+++.+....+.+-.+
T Consensus 1165 ~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~----~~~e~ealDt~R~s~a---kssp---mmeTi~~ci~~iD~~vLe 1234 (1702)
T KOG0915|consen 1165 ELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL----INIETEALDTLRASAA---KSSP---MMETINKCINYIDISVLE 1234 (1702)
T ss_pred hhcchhhHHHHHHHHHccccchHHHHHHHHhh----hhhHHHHHHHHHHhhh---cCCc---HHHHHHHHHHhhhHHHHH
Confidence 221 122233444432 455678888887 2222344443333221 2222 235677777777888888
Q ss_pred HHHHHHHHHhhhc-CchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 286 SMMKELLIFLEKS-EPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 286 ~Iv~eL~~yl~~~-d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
+++.++.+-++.. .-.-|.-+..-|..++.|++.+..-|.+-+++.+-.
T Consensus 1235 elip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~ 1284 (1702)
T KOG0915|consen 1235 ELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFP 1284 (1702)
T ss_pred HHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhh
Confidence 9999999888763 556677788888889999886666566666665544
No 127
>KOG1967|consensus
Probab=87.42 E-value=31 Score=39.89 Aligned_cols=237 Identities=16% Similarity=0.185 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh-hHH-----hhHHHHHHhcCCCCCcchHHHHHHHHHhhc---CC
Q psy4020 95 SRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPE-LME-----IFLPATRLLLSDKNHAIHQVKILKLLRILG---KN 165 (530)
Q Consensus 95 ~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~-~i~-----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~---~~ 165 (530)
+-+++..+..-+.+.+|-+|++|+.++..+.-+.|. ... .++.--++-++|. +. ..-.++..+..+. .-
T Consensus 41 l~dlV~sl~~yl~s~n~~~Rakai~llsqvl~~~p~d~L~k~EVs~Ll~fyq~rldd~-~l-a~~~~l~~l~aL~~~~~~ 118 (1030)
T KOG1967|consen 41 LLDLVTSLGTYLTSDNPEERAKAIELLSQVLSEFPKDLLQKKEVSVLLQFYQNRLDDS-AL-AKEAVLGGLKALILMSKL 118 (1030)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHHHHhHHHHh-hh-hHHHHHHHHHHHHHhhcC
Confidence 456788888999999999999999999998887775 332 1221112222221 11 1122233222221 11
Q ss_pred ChhhHHHHHHHHHHHhhcccCCCCC--cchhHHHHHHHHhccCCC--hH-HHHHHHHHHHHhc-cCCCchhHHHHHHHHH
Q psy4020 166 DVEASEAMNDILAQVATNTETSKNV--GNTILYETVLSIMDIKSE--SG-LRVLAVNILGRFL-LNNDKNIRYVALNTLL 239 (530)
Q Consensus 166 ~~~~~~~l~~iL~~~l~~~~~~~n~--~~aV~~eai~~i~~l~~~--~~-l~~~~v~~L~~lL-~s~d~niry~aL~~L~ 239 (530)
.+. ....++..++++.+..+.+ ..-..||-...|++.... .+ .....+.....-. ..+||---.++...+.
T Consensus 119 p~~---~ivsllkalfq~~~vqs~aq~~R~~~~~Il~~~l~~~~~~l~s~~~D~~~~~f~~~~~GEKDPRnLml~F~l~~ 195 (1030)
T KOG1967|consen 119 PDN---FIVSLLKALFQEVQVQSLAQKERLLQYEILEWFLDYRLEFLKSLGPDFLFTAFCKVVDGEKDPRNLMLVFSLVK 195 (1030)
T ss_pred Cch---HHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcCCCCchhhHHHHHHHH
Confidence 111 1223333333433221111 112567777776642110 00 0111222222222 4688888888888888
Q ss_pred HHhc-cCh-HHHHHHHHHHhhhc--------cCCcHHHHHHHHHHHHh---ccChhhHHHHHHHHHHHhhhcCchhhhhh
Q psy4020 240 RTVY-IDT-SAVQRHRNTILECL--------KDPDVSIRRRALELSFA---LVNSANVRSMMKELLIFLEKSEPDFKAHC 306 (530)
Q Consensus 240 ~l~~-~~p-~~~~~~~~~i~~~l--------~d~d~~Ir~~aL~ll~~---l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~ 306 (530)
.+.. .+| .-|.+-.-++..|. +|+...||+.=|.+-.+ .+++.=.+..+.-|++-+...++..|.+.
T Consensus 196 ~i~s~~~~l~~F~edlFeV~~CYFPI~Fkppk~D~~~I~reDL~~sLr~al~stP~Fa~~~lp~LlEKL~as~~~~K~Ds 275 (1030)
T KOG1967|consen 196 EISSLNFPLGPFTEDLFEVIACYFPITFKPPKDDTITIRREDLKASLRSALVSTPSFAPFALPLLLEKLNASDPSAKVDS 275 (1030)
T ss_pred HHhhccCCCCccHHHHHHHhheeeeeeccCCCCCcccccHHHHHHHHHHHHhcCccchhhHHHHHHHHhccccchhhhhH
Confidence 8887 344 23333344444553 24455678665554443 24777788888999999988899999999
Q ss_pred HHHHHHHHHhhCC-CchhHHHHHHHHHHHhh
Q psy4020 307 SSNIVLCAERFAP-NKRWHLDTLLKVLVANL 336 (530)
Q Consensus 307 i~~I~~la~k~~~-~~~~~vd~Ll~lL~~~~ 336 (530)
......||.+|.. ...|.-.-+..-+...+
T Consensus 276 L~~L~ec~~~ygv~~~~~~~~~lWsaik~ei 306 (1030)
T KOG1967|consen 276 LDTLNECCLKYGVRRMLPAQKKLWSAIKPEI 306 (1030)
T ss_pred HHHHHHHHHHhCchhhhhhHHHHHHHHHHHH
Confidence 9999999999974 34566666666666543
No 128
>KOG2160|consensus
Probab=87.39 E-value=38 Score=34.95 Aligned_cols=70 Identities=20% Similarity=0.139 Sum_probs=50.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhh
Q psy4020 100 SEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEA 169 (530)
Q Consensus 100 ~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~ 169 (530)
..+...++++++-||..|+-.+..+.+.+|..-+ .++..+...+...++.-.-.++|-.+..+.+..+..
T Consensus 127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g 201 (342)
T KOG2160|consen 127 VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPG 201 (342)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHH
Confidence 3455588999999999999999999999997655 356677777764444333456666666666665543
No 129
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=87.31 E-value=22 Score=37.34 Aligned_cols=129 Identities=19% Similarity=0.208 Sum_probs=90.6
Q ss_pred CCCCCCch--HHHHHhhcCCCCchhHHHHHHHHhhccCChh--------HHHHHHHHHHhhcCCCChhhhhHHHHHHhc-
Q psy4020 20 KYPAHFGQ--LECLKLIASSRFTDKRIGYLGAMLLLDERQD--------VHLLITNSLKNDLNSSTQFVVGLALCTLGA- 88 (530)
Q Consensus 20 G~d~sf~~--~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e--------~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~- 88 (530)
.+|..|++ ..+..++-+++-+.|-.||-.+..+...... +-.+++=++.+|.. ++.-|--||+.+-.
T Consensus 18 ~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~--~~~ER~QALkliR~~ 95 (371)
T PF14664_consen 18 KYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNK--NDVEREQALKLIRAF 95 (371)
T ss_pred hhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCC--ChHHHHHHHHHHHHH
Confidence 45554443 2344345555588999999999887765543 23456777888765 46677777766544
Q ss_pred --C--CChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH--hhHHHHHHhcCCCCCcc
Q psy4020 89 --I--ASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME--IFLPATRLLLSDKNHAI 150 (530)
Q Consensus 89 --i--~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~--~~i~~l~~lL~d~n~~V 150 (530)
+ +..++-..++..+..+..+.+.-.|..|+-+++.+.-.+|+++- .-+..+.+.+.|....+
T Consensus 96 l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~ 163 (371)
T PF14664_consen 96 LEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSI 163 (371)
T ss_pred HHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhH
Confidence 4 34566788999999999999999999999999999999999884 34555555565644443
No 130
>KOG4413|consensus
Probab=87.27 E-value=31 Score=35.37 Aligned_cols=245 Identities=16% Similarity=0.171 Sum_probs=137.2
Q ss_pred CCCCchhHH-HHHHHHhhccCChhHHHHHH---HHHHhhcCCCChhhhhHHHHHHhcCCC-------hhhH----HHHHH
Q psy4020 36 SSRFTDKRI-GYLGAMLLLDERQDVHLLIT---NSLKNDLNSSTQFVVGLALCTLGAIAS-------PEMS----RDLAS 100 (530)
Q Consensus 36 S~~~~~Krl-~YL~l~~~~~~~~e~~~L~~---Nsl~kDL~s~n~~vr~lALr~l~~i~~-------~el~----~~l~~ 100 (530)
..+..+|-- +--.+..++....... ++- --+|..|.+++..+..+|++++++|.. .++. ..+.+
T Consensus 53 NenhrekttlcVscLERLfkakegah-lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilk 131 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAH-LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILK 131 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchh-hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHH
Confidence 345555532 3333444444332221 222 356778889999999999999999862 2222 34667
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHH-HHHhcCCCC-----CcchHHHHHHHHHhhcCCChhhH----
Q psy4020 101 EVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPA-TRLLLSDKN-----HAIHQVKILKLLRILGKNDVEAS---- 170 (530)
Q Consensus 101 ~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~-l~~lL~d~n-----~~V~qi~iL~lL~~l~~~~~~~~---- 170 (530)
.+..++...+.-|-|+|.-.+-++.+ .|+.++-..+. +.+=+..+| ..+.-++++.++-.+....|...
T Consensus 132 lildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneck 210 (524)
T KOG4413|consen 132 LILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECK 210 (524)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhh
Confidence 88888888999999999999988865 67766643321 111111111 12245666666665544444432
Q ss_pred -HHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccC---CChHH--HHHHHHHHHHhcc--CCCchhHHHHHHHHHHHh
Q psy4020 171 -EAMNDILAQVATNTETSKNVGNTILYETVLSIMDIK---SESGL--RVLAVNILGRFLL--NNDKNIRYVALNTLLRTV 242 (530)
Q Consensus 171 -~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~---~~~~l--~~~~v~~L~~lL~--s~d~niry~aL~~L~~l~ 242 (530)
.-+.+.|..-++.++ ..-|...|+.....+. ...+. ....++.+...+. ++||--+|-+|--..++.
T Consensus 211 kSGLldlLeaElkGte-----DtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkff 285 (524)
T KOG4413|consen 211 KSGLLDLLEAELKGTE-----DTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFF 285 (524)
T ss_pred hhhHHHHHHHHhcCCc-----ceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh
Confidence 234556655555432 3446666666554432 11111 1234555666664 567765555544444433
Q ss_pred c------cChHH-HHHH---HHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHH
Q psy4020 243 Y------IDTSA-VQRH---RNTILECLKDPDVSIRRRALELSFALVNSANVRSM 287 (530)
Q Consensus 243 ~------~~p~~-~~~~---~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~I 287 (530)
. ..|+. ++.+ ....|..+...|+....-|+|-+..|....-=.++
T Consensus 286 gkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadl 340 (524)
T KOG4413|consen 286 GKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADL 340 (524)
T ss_pred cchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHH
Confidence 2 12332 2332 33445566677788888889988888764433333
No 131
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=87.01 E-value=5.8 Score=44.18 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=55.4
Q ss_pred HHHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhh
Q psy4020 62 LITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIF 135 (530)
Q Consensus 62 L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~ 135 (530)
-+...+.+..+..++..+-++|++|||++.|..+..+.+.+. .-...++++|..|+.|+-++-..+|+.+...
T Consensus 446 ~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~ 518 (574)
T smart00638 446 YLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEV 518 (574)
T ss_pred HHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 344455555556677778899999999999999888887765 2234578999999999998888888877643
No 132
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=86.98 E-value=28 Score=37.26 Aligned_cols=65 Identities=23% Similarity=0.204 Sum_probs=51.8
Q ss_pred HHHHHHHhcc-CCCchhHHHHHHHHHHHhccChH---HHHH--HHHHHhhhccCCcHHHHHHHHHHHHhcc
Q psy4020 215 AVNILGRFLL-NNDKNIRYVALNTLLRTVYIDTS---AVQR--HRNTILECLKDPDVSIRRRALELSFALV 279 (530)
Q Consensus 215 ~v~~L~~lL~-s~d~niry~aL~~L~~l~~~~p~---~~~~--~~~~i~~~l~d~d~~Ir~~aL~ll~~l~ 279 (530)
++..|..+|. ++|+.+--+|+.=+.++++.+|. ++++ -...++.++.++|+.||..||-.+.++.
T Consensus 354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 354 LLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4567777774 77899999999999999999884 4433 3567888899999999999999887763
No 133
>KOG1525|consensus
Probab=86.80 E-value=36 Score=41.30 Aligned_cols=249 Identities=14% Similarity=0.122 Sum_probs=137.1
Q ss_pred hhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHh-hHHHHHHhcCCCC--CcchHHH
Q psy4020 78 VVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEI-FLPATRLLLSDKN--HAIHQVK 154 (530)
Q Consensus 78 vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~-~i~~l~~lL~d~n--~~V~qi~ 154 (530)
..+++...++.+.+ .-..+..-+...|..+.+..++.|..-...+..+.++.++. .-..+...+.... ....+++
T Consensus 164 ~~~i~~~li~e~d~--v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~ 241 (1266)
T KOG1525|consen 164 MLDIAIMLITEEDT--VQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIK 241 (1266)
T ss_pred HHHHHHHHHHhhcc--chHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhH
Confidence 34455544444432 22334444444444444555555554444444444444432 2222333332222 2236777
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChH------HHHHHHHHHHHhccCCCc
Q psy4020 155 ILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESG------LRVLAVNILGRFLLNNDK 228 (530)
Q Consensus 155 iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~------l~~~~v~~L~~lL~s~d~ 228 (530)
.-+++..+....|+..-....-|..-+.. -+..+..+|++++-.+-.+++ .-..-...|++| .+.+.
T Consensus 242 ~he~i~~L~~~~p~ll~~vip~l~~eL~s------e~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~-~D~~~ 314 (1266)
T KOG1525|consen 242 YHELILELWRIAPQLLLAVIPQLEFELLS------EQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRF-NDISV 314 (1266)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhc------chHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHh-ccCCh
Confidence 77777777776665433333333333332 267899999998765422211 011122345555 46789
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHh----hhcCchhhh
Q psy4020 229 NIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFL----EKSEPDFKA 304 (530)
Q Consensus 229 niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl----~~~d~~~~~ 304 (530)
++|..+++........+|.....-....--+..|.|..+|.+..-++....-..-.-.++..+++.+ ++--..+|.
T Consensus 315 ~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~ 394 (1266)
T KOG1525|consen 315 EVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRK 394 (1266)
T ss_pred hhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999988888765432222224456677777766555544332222222222255555 344567888
Q ss_pred hhHHHHHHHHHh-h----------CCCchhHHHHHHHHHHHh
Q psy4020 305 HCSSNIVLCAER-F----------APNKRWHLDTLLKVLVAN 335 (530)
Q Consensus 305 ~~i~~I~~la~k-~----------~~~~~~~vd~Ll~lL~~~ 335 (530)
.++..+..+-.+ | .+..+|.-+.++.++-.+
T Consensus 395 ~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~ 436 (1266)
T KOG1525|consen 395 QAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYEN 436 (1266)
T ss_pred HHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhc
Confidence 888888776654 2 357789999999988763
No 134
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=86.61 E-value=42 Score=34.60 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=53.8
Q ss_pred CChhhhhHHHHHHhcCC---ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-----hChhhHHhhHHHHHHhcCC
Q psy4020 74 STQFVVGLALCTLGAIA---SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIIL-----KVPELMEIFLPATRLLLSD 145 (530)
Q Consensus 74 ~n~~vr~lALr~l~~i~---~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~-----~~p~~i~~~i~~l~~lL~d 145 (530)
.||.....++.+++.=. +.++-+.+...+.+.+.++.+-|||.-+.++..++. .....+..+++.+.+.+.+
T Consensus 35 ~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 114 (339)
T PF12074_consen 35 SNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKE 114 (339)
T ss_pred cCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHH
Confidence 67777777776666522 567788999999999999999999999999999986 2234455666666666543
No 135
>KOG2137|consensus
Probab=86.36 E-value=63 Score=36.44 Aligned_cols=221 Identities=16% Similarity=0.147 Sum_probs=130.0
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-----------------HhhChhhHHhhHHHHHHhcCCCCCcchHHHH
Q psy4020 93 EMSRDLASEVERLMKSSNAYIRKKAALCAYRI-----------------ILKVPELMEIFLPATRLLLSDKNHAIHQVKI 155 (530)
Q Consensus 93 el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki-----------------~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~i 155 (530)
++=+++...+.+.+ +.+++||. ++.-+..+ ..++|.--..|++.+.+++.+-.+.|.+-++
T Consensus 236 ~~p~el~~~l~k~l-~~~~~~rp-~~~~l~~~~ff~D~~~~aLrfLD~l~~kdn~qKs~Flk~Ls~~ip~fp~rv~~~ki 313 (700)
T KOG2137|consen 236 NLPSELRESLKKLL-NGDSAVRP-TLDLLLSIPFFSDPGLKALRFLDDLPQKDNSQKSSFLKGLSKLIPTFPARVLFQKI 313 (700)
T ss_pred cCcHHHHHHHHHHh-cCCcccCc-chhhhhcccccCCchhhhhhhcccccccCcHHHHHHHHHHHHhhccCCHHHHHHhh
Confidence 34445556665554 46677887 44333332 2223333335777777788777777755555
Q ss_pred HHHHHh-h----------------cCCChh--hHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHH
Q psy4020 156 LKLLRI-L----------------GKNDVE--ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAV 216 (530)
Q Consensus 156 L~lL~~-l----------------~~~~~~--~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v 216 (530)
|=.|.. + ....+. ...++..-|..+...+.. + .-...++|=..+|.+-...+++...+.
T Consensus 314 LP~L~~el~n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~-~-~~~l~i~e~mdlL~~Kt~~e~~~~~Il 391 (700)
T KOG2137|consen 314 LPTLVAELVNTKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDP-K-QALLFILENMDLLKEKTPPEEVKEKIL 391 (700)
T ss_pred hhHHHHHhccccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCc-c-cchhhHHhhHHHHHhhCChHHHHHHHH
Confidence 543322 1 111111 123334444444432211 1 134567777777777667777777778
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHhccCh-HHHHH-HHHHHhh-hccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHH
Q psy4020 217 NILGRFLLNNDKNIRYVALNTLLRTVYIDT-SAVQR-HRNTILE-CLKDPDVSIRRRALELSFALVNSANVRSMMKELLI 293 (530)
Q Consensus 217 ~~L~~lL~s~d~niry~aL~~L~~l~~~~p-~~~~~-~~~~i~~-~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~ 293 (530)
..|-+-+.+.+..++-.+|+.+..+...-+ ..+.+ -...+-. |+...+.++|..+|..+-.++..--.-.++++++-
T Consensus 392 plL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lp 471 (700)
T KOG2137|consen 392 PLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLP 471 (700)
T ss_pred HHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 777777788999999999999888776432 22221 1222222 67788899999988888887744444455666665
Q ss_pred Hhhh---cCchhhhhhHHHHHHHHHhh
Q psy4020 294 FLEK---SEPDFKAHCSSNIVLCAERF 317 (530)
Q Consensus 294 yl~~---~d~~~~~~~i~~I~~la~k~ 317 (530)
.+.. .|++..-..++....++.+-
T Consensus 472 i~~~~~~~dp~iv~~~~~i~~~l~~~~ 498 (700)
T KOG2137|consen 472 ILKCIKTRDPAIVMGFLRIYEALALII 498 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhhc
Confidence 5544 47777777777666666543
No 136
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=85.62 E-value=17 Score=34.00 Aligned_cols=68 Identities=29% Similarity=0.365 Sum_probs=51.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhh
Q psy4020 100 SEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEA 169 (530)
Q Consensus 100 ~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~ 169 (530)
+.+.+...+.++++||.|+.+..+.+.. ..-.+.+++.+..++.|.+..| |..+--.|+.++..+|+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~~~l~~~~~~~~d~~~~V-qkav~w~L~~~~~~~~~~ 175 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFDLLLEIIERLLHDEEYFV-QKAVGWALREYGKKDPER 175 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHhhCHHH
Confidence 4566777888999999999999998876 2235567777777777665554 777788888888887753
No 137
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=84.69 E-value=20 Score=37.74 Aligned_cols=162 Identities=17% Similarity=0.222 Sum_probs=94.5
Q ss_pred HHHHHHHhhChhhHH-----hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHH-----HHHHHhhcccCCC
Q psy4020 119 LCAYRIILKVPELME-----IFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMND-----ILAQVATNTETSK 188 (530)
Q Consensus 119 la~~ki~~~~p~~i~-----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~-----iL~~~l~~~~~~~ 188 (530)
-.+.++++++|++-+ .+.+.++.++-+.+..| -..-+|++|.+... ++..+.+.+ ++...+...
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~v-raa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~---- 78 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEV-RAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRD---- 78 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHH-HHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhccc----
Confidence 456778888885443 46677776554444554 23446666655543 332233322 122222211
Q ss_pred CCcchhHHHHHH---HHhccCCC-hHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHH--HHHHhhhccC
Q psy4020 189 NVGNTILYETVL---SIMDIKSE-SGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRH--RNTILECLKD 262 (530)
Q Consensus 189 n~~~aV~~eai~---~i~~l~~~-~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~--~~~i~~~l~d 262 (530)
+.+..=.-+|.| .++++... ..+-...+..+.....+.+.+.|.+++.+|.+++-.+|+++... ...++..+-|
T Consensus 79 ~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 79 NKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID 158 (371)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh
Confidence 112122223444 45666432 22334566677777778888999999999999999999987432 3445555555
Q ss_pred CcHHHHHHHHHHHHhccChhhHHH
Q psy4020 263 PDVSIRRRALELSFALVNSANVRS 286 (530)
Q Consensus 263 ~d~~Ir~~aL~ll~~l~n~~Nv~~ 286 (530)
....+....+..+..+.|.-+...
T Consensus 159 ~~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred ccHhHHHHHHHHHHHHhCCcchhh
Confidence 555677777777777777665543
No 138
>KOG2956|consensus
Probab=84.37 E-value=5.1 Score=42.62 Aligned_cols=135 Identities=16% Similarity=0.184 Sum_probs=77.3
Q ss_pred HHHHHHHHhhhhcCCCC---C---CCch--HHHHHhhcC-CCCchhHHHHHHHHhhccCChh----HHHHHHHHHHhhcC
Q psy4020 6 QVINDAVERDTYLPKYP---A---HFGQ--LECLKLIAS-SRFTDKRIGYLGAMLLLDERQD----VHLLITNSLKNDLN 72 (530)
Q Consensus 6 ~ei~~~~~~~i~mlG~d---~---sf~~--~~vikl~~S-~~~~~Krl~YL~l~~~~~~~~e----~~~L~~Nsl~kDL~ 72 (530)
.|-+.|+--.+.|+-.+ + +|+. ..+.+.++. .+...|+++.-.+...+...+. -..+++-.+..--.
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ 381 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK 381 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh
Confidence 44555554444444222 2 2333 335555555 7888999998888887776652 23343333332222
Q ss_pred CCChh----------------------------hhh-------HHHHHHhcCC----Ch---hhHHHHHHHHHHHhcCCC
Q psy4020 73 SSTQF----------------------------VVG-------LALCTLGAIA----SP---EMSRDLASEVERLMKSSN 110 (530)
Q Consensus 73 s~n~~----------------------------vr~-------lALr~l~~i~----~~---el~~~l~~~V~~~l~~~~ 110 (530)
++++. +.+ ++|+.+.++. -+ .++.++.|.+.+...+.+
T Consensus 382 ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~S 461 (516)
T KOG2956|consen 382 DSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTS 461 (516)
T ss_pred CCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCch
Confidence 22221 111 4454554443 22 235677888888888899
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHhhHHHHHHh
Q psy4020 111 AYIRKKAALCAYRIILKVPELMEIFLPATRLL 142 (530)
Q Consensus 111 ~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~l 142 (530)
.-|||+|+.|+.-|+.... ++++.|.+..|
T Consensus 462 S~VRKtaVfCLVamv~~vG--~~~mePhL~~L 491 (516)
T KOG2956|consen 462 STVRKTAVFCLVAMVNRVG--MEEMEPHLEQL 491 (516)
T ss_pred HHhhhhHHHhHHHHHHHHh--HHhhhhHhhhc
Confidence 9999999999998887653 13444555443
No 139
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=84.17 E-value=2.8 Score=30.59 Aligned_cols=50 Identities=22% Similarity=0.041 Sum_probs=35.6
Q ss_pred chhHHHHHHHHHHHhccChHHHHHHHHHH----hhhccCCcHHHHHHHHHHHHh
Q psy4020 228 KNIRYVALNTLLRTVYIDTSAVQRHRNTI----LECLKDPDVSIRRRALELSFA 277 (530)
Q Consensus 228 ~niry~aL~~L~~l~~~~p~~~~~~~~~i----~~~l~d~d~~Ir~~aL~ll~~ 277 (530)
+.+|.-++..|..+....++.+++|...+ +.+|+|++..+|..|..-|.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 35677888888887777777666655544 456778888999988776644
No 140
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=83.92 E-value=52 Score=35.06 Aligned_cols=220 Identities=15% Similarity=0.098 Sum_probs=118.7
Q ss_pred HHHHhhcCCCCchhHHHHHHHHhhccCC----hhHHHHHHHHHHhhcC-CCChhhhhHHHHHHhcCCC-------hhhHH
Q psy4020 29 ECLKLIASSRFTDKRIGYLGAMLLLDER----QDVHLLITNSLKNDLN-SSTQFVVGLALCTLGAIAS-------PEMSR 96 (530)
Q Consensus 29 ~vikl~~S~~~~~Krl~YL~l~~~~~~~----~e~~~L~~Nsl~kDL~-s~n~~vr~lALr~l~~i~~-------~el~~ 96 (530)
..+.++.|+|..+|...--.+..+...- +-..--+.|.|.+-.. ...+.-.+-.|..+++|.+ ++...
T Consensus 137 ~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~ 216 (409)
T PF01603_consen 137 KLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQ 216 (409)
T ss_dssp HHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHH
Confidence 4667888888888877655555544322 2233334555554443 4566777888999988765 33344
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCC-Chhh----H
Q psy4020 97 DLASEVERLMKSSN-AYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKN-DVEA----S 170 (530)
Q Consensus 97 ~l~~~V~~~l~~~~-~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~-~~~~----~ 170 (530)
-+...+..+...++ ....+-=..|+...+.++|.+...++..+...=--.|+. -|+-.|..+..+... +|.. .
T Consensus 217 fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~-Kev~FL~el~~il~~~~~~~f~~i~ 295 (409)
T PF01603_consen 217 FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQ-KEVLFLNELEEILEVLPPEEFQKIM 295 (409)
T ss_dssp HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HH-HHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCch-hHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 45566666666663 333566678888889999998877665555433222221 244445544444332 2322 2
Q ss_pred HHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhc-----c-CCC-hHHHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHh
Q psy4020 171 EAMNDILAQVATNTETSKNVGNTILYETVLSIMD-----I-KSE-SGLRVLAVNILGRFLL-NNDKNIRYVALNTLLRTV 242 (530)
Q Consensus 171 ~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~-----l-~~~-~~l~~~~v~~L~~lL~-s~d~niry~aL~~L~~l~ 242 (530)
..+...+..++++. +.-|.-.|....-+ + ..+ ..+.......|.+... +=+..+|-.+...+..+.
T Consensus 296 ~~lf~~la~ci~S~------h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~ 369 (409)
T PF01603_consen 296 VPLFKRLAKCISSP------HFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILM 369 (409)
T ss_dssp HHHHHHHHHHHTSS------SHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC------CHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33444555555432 34455555443211 0 111 1222233333333222 225678888888888888
Q ss_pred ccChHHHHHHHHH
Q psy4020 243 YIDTSAVQRHRNT 255 (530)
Q Consensus 243 ~~~p~~~~~~~~~ 255 (530)
..+|+++.++...
T Consensus 370 ~~d~~lf~~~~~~ 382 (409)
T PF01603_consen 370 EMDPKLFDKCAQK 382 (409)
T ss_dssp TTSHHHHHHHHHH
T ss_pred HhCHHHHHHHHHH
Confidence 8888888765443
No 141
>KOG0567|consensus
Probab=83.84 E-value=5.5 Score=39.41 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=41.9
Q ss_pred HHHHHHhhcCC--CChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy4020 63 ITNSLKNDLNS--STQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAY 122 (530)
Q Consensus 63 ~~Nsl~kDL~s--~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ 122 (530)
++.++.|-|.+ .+|++|..|..+|+.|++++-. +-+++.+.|..+.||+.+..++-
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~~----~vL~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIADEDCV----EVLKEYLGDEERVVRESCEVALD 276 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHHH----HHHHHHcCCcHHHHHHHHHHHHH
Confidence 36677777654 4788899999999988888554 45566788888888888777663
No 142
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=83.82 E-value=64 Score=34.34 Aligned_cols=194 Identities=18% Similarity=0.168 Sum_probs=110.4
Q ss_pred hhhhHHHHHHhcCCC----hhhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhCh--hhHHhhHHHHHHhc-CCCCC
Q psy4020 77 FVVGLALCTLGAIAS----PEMSRDLASEVERL-MKSSNAYIRKKAALCAYRIILKVP--ELMEIFLPATRLLL-SDKNH 148 (530)
Q Consensus 77 ~vr~lALr~l~~i~~----~el~~~l~~~V~~~-l~~~~~yVRK~A~la~~ki~~~~p--~~i~~~i~~l~~lL-~d~n~ 148 (530)
....+.-..++.++- |+..+ +...+.+. ....+++.|..|+-+++-+..+.| +.++.+++.+.+-+ ...+.
T Consensus 166 ~~~~l~~~il~~l~~~~~~~~~~~-ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~ 244 (415)
T PF12460_consen 166 RLVILFSAILCSLRKDVSLPDLEE-LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDS 244 (415)
T ss_pred cHHHHHHHHHHcCCcccCccCHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCc
Confidence 334455566777663 33333 44444444 445679999999999999999864 34666776666555 11111
Q ss_pred cc------hHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCC--------------
Q psy4020 149 AI------HQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSE-------------- 208 (530)
Q Consensus 149 ~V------~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~-------------- 208 (530)
.. ..+-+.|.| +.+.+|... .+.+.+..++.+ ..+-..+++.+--+-.+
T Consensus 245 ~~~~~~~~~~~Wi~KaL--v~R~~~~~~-~~~~~L~~lL~~--------~~~g~~aA~~f~il~~d~~~~l~~~~~a~vk 313 (415)
T PF12460_consen 245 ELRPQALEILIWITKAL--VMRGHPLAT-ELLDKLLELLSS--------PELGQQAAKAFGILLSDSDDVLNKENHANVK 313 (415)
T ss_pred chhHHHHHHHHHHHHHH--HHcCCchHH-HHHHHHHHHhCC--------hhhHHHHHHHHhhHhcCcHHhcCccccchhh
Confidence 11 111223322 335555543 333333344442 22333444432211100
Q ss_pred ----hHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChH-HHHHHHHHH----hhhccCCcHHHHHHHHHHHHhcc
Q psy4020 209 ----SGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTS-AVQRHRNTI----LECLKDPDVSIRRRALELSFALV 279 (530)
Q Consensus 209 ----~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~-~~~~~~~~i----~~~l~d~d~~Ir~~aL~ll~~l~ 279 (530)
+.+....+..|.....+.+...|-..|..|..++..-|. ++..+..++ +.+|+-+|..++.-+|+++..+.
T Consensus 314 lLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l 393 (415)
T PF12460_consen 314 LLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMIL 393 (415)
T ss_pred hHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 122233444454444555555787888888888877664 556666555 46778888899999999999988
Q ss_pred Chh
Q psy4020 280 NSA 282 (530)
Q Consensus 280 n~~ 282 (530)
++.
T Consensus 394 ~~~ 396 (415)
T PF12460_consen 394 EEA 396 (415)
T ss_pred HcC
Confidence 776
No 143
>KOG2274|consensus
Probab=83.65 E-value=49 Score=38.23 Aligned_cols=200 Identities=15% Similarity=0.165 Sum_probs=128.4
Q ss_pred ChhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhh---ChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCC
Q psy4020 91 SPEMSRDLASEVERLMKSS-NAYIRKKAALCAYRIILK---VPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKND 166 (530)
Q Consensus 91 ~~el~~~l~~~V~~~l~~~-~~yVRK~A~la~~ki~~~---~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~ 166 (530)
+.+....+...+...+.+. .|..--+|..++.+.... .|.+...|+......+.-..+....++.++.+..||...
T Consensus 443 ~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~ 522 (1005)
T KOG2274|consen 443 NDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVK 522 (1005)
T ss_pred hHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCce
Confidence 3455566666677777664 677666899999876654 577778888888887776666666888899998888543
Q ss_pred hh--hHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCCh-HHHH--HHHHHHHHhcc-CCCchhHHHHHHHHHH
Q psy4020 167 VE--ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSES-GLRV--LAVNILGRFLL-NNDKNIRYVALNTLLR 240 (530)
Q Consensus 167 ~~--~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~-~l~~--~~v~~L~~lL~-s~d~niry~aL~~L~~ 240 (530)
+- ....+.+.|.++.... +..-...++|+....+.+.++. ..++ .+.-.+.-|+. ++||-+--.+.+.+.+
T Consensus 523 vl~~~~p~ild~L~qlas~~---s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~e 599 (1005)
T KOG2274|consen 523 VLLSLQPMILDGLLQLASKS---SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEE 599 (1005)
T ss_pred eccccchHHHHHHHHHcccc---cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 21 2345667777765532 1123457899998888886542 1122 12222334443 7899888888888888
Q ss_pred Hhcc---ChHHHHHHHHHHhhhccCCc----HHHHHHHHHHHHhcc-ChhhHHHHHHHHHHHh
Q psy4020 241 TVYI---DTSAVQRHRNTILECLKDPD----VSIRRRALELSFALV-NSANVRSMMKELLIFL 295 (530)
Q Consensus 241 l~~~---~p~~~~~~~~~i~~~l~d~d----~~Ir~~aL~ll~~l~-n~~Nv~~Iv~eL~~yl 295 (530)
+.+. +..........++..+.-++ ......++|+|.-+. +.. ..+.+.+..|+
T Consensus 600 l~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp--~pL~~~l~~~~ 660 (1005)
T KOG2274|consen 600 LLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTP--SPLPNLLICYA 660 (1005)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCC--CCccHHHHHHH
Confidence 8764 22344566777777766544 567777888877443 111 12556677766
No 144
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=83.53 E-value=2.1 Score=40.23 Aligned_cols=70 Identities=20% Similarity=0.191 Sum_probs=56.8
Q ss_pred cCCCChhhhhHHHHHHhcCCCh-hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHH
Q psy4020 71 LNSSTQFVVGLALCTLGAIASP-EMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATR 140 (530)
Q Consensus 71 L~s~n~~vr~lALr~l~~i~~~-el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~ 140 (530)
..|+|++.|-.|.-++...... .-.+.+...+..++.|.+.||||...-++..+++++|+.+..|+....
T Consensus 114 ~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~~ 184 (197)
T cd06561 114 AKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKNG 184 (197)
T ss_pred HhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 3578888888887776664433 557778888889999999999999999999999999999988876544
No 145
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=81.77 E-value=16 Score=32.37 Aligned_cols=84 Identities=18% Similarity=0.093 Sum_probs=51.1
Q ss_pred cchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHH------HHHHHhhhccC--
Q psy4020 191 GNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQR------HRNTILECLKD-- 262 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~------~~~~i~~~l~d-- 262 (530)
+.+..+|.+..|-.-... -+.++..|.+-|.++++++++.+|..|-.++..-...|.. +...+..++.+
T Consensus 17 D~~~il~icd~I~~~~~~---~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~ 93 (133)
T cd03561 17 DWALNLELCDLINLKPNG---PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSP 93 (133)
T ss_pred cHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCC
Confidence 455666666555332222 3457778888888899999999999998888765543322 22233333332
Q ss_pred -CcHHHHHHHHHHHHh
Q psy4020 263 -PDVSIRRRALELSFA 277 (530)
Q Consensus 263 -~d~~Ir~~aL~ll~~ 277 (530)
.+..+|.++++++..
T Consensus 94 ~~~~~Vk~kil~ll~~ 109 (133)
T cd03561 94 KYDPKVREKALELILA 109 (133)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 245566666555543
No 146
>KOG2213|consensus
Probab=81.45 E-value=75 Score=33.41 Aligned_cols=79 Identities=23% Similarity=0.281 Sum_probs=58.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q psy4020 101 EVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQV 180 (530)
Q Consensus 101 ~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~ 180 (530)
.|.+...- +.--++-|.--+.+.|+++|++..+.++.-.++..|.|.+| -...++-|..+|..| ...+..+.|.++
T Consensus 29 ~il~~~k~-~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~i-r~qaik~lp~fc~~d--~~~rv~d~l~qL 104 (460)
T KOG2213|consen 29 GILKAVKG-TSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGI-RRQAIKGLPLFCKGD--ALSRVNDVLVQL 104 (460)
T ss_pred HHHHHhhc-chHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhh-HHHHHhccchhccCc--hhhhhHHHHHHH
Confidence 34444333 33346778888999999999999999999999999999988 334578888888874 334567778777
Q ss_pred hhc
Q psy4020 181 ATN 183 (530)
Q Consensus 181 l~~ 183 (530)
+.+
T Consensus 105 Lnk 107 (460)
T KOG2213|consen 105 LNK 107 (460)
T ss_pred HHH
Confidence 763
No 147
>KOG2062|consensus
Probab=81.26 E-value=9.8 Score=42.72 Aligned_cols=159 Identities=16% Similarity=0.137 Sum_probs=85.3
Q ss_pred HHHhhcCCCCchhHHHHHHHHh-hccCChhHHHHHHHHHHh-hcCCCChhhhhHHHHHHhcCC--ChhhHHHHHHHHHHH
Q psy4020 30 CLKLIASSRFTDKRIGYLGAML-LLDERQDVHLLITNSLKN-DLNSSTQFVVGLALCTLGAIA--SPEMSRDLASEVERL 105 (530)
Q Consensus 30 vikl~~S~~~~~Krl~YL~l~~-~~~~~~e~~~L~~Nsl~k-DL~s~n~~vr~lALr~l~~i~--~~el~~~l~~~V~~~ 105 (530)
|-+++..+|.-+|+-|-+.+-. |...... =++-.+.. -.++.|.-||-.|...|+-+. +|+.+ +.+..+
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTgnn---kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~----~s~V~l 596 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTGNN---KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQL----PSTVSL 596 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccCch---hhHHHhhcccccccchHHHHHHHHHheeeEecChhhc----hHHHHH
Confidence 4456667777777776443332 2222111 01111111 134667777777777777654 45444 333344
Q ss_pred hcC-CCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhH---HHHHHHHHHHh
Q psy4020 106 MKS-SNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEAS---EAMNDILAQVA 181 (530)
Q Consensus 106 l~~-~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~---~~l~~iL~~~l 181 (530)
|.. -||+||=-|++|+.=.+. ..-....++.+..|.+|....|-|=.++-+-..+++.++... ..+.+.+.+++
T Consensus 597 Lses~N~HVRyGaA~ALGIaCA--GtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI 674 (929)
T KOG2062|consen 597 LSESYNPHVRYGAAMALGIACA--GTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVI 674 (929)
T ss_pred HhhhcChhhhhhHHHHHhhhhc--CCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHh
Confidence 443 477777777777653321 112234666677777788778877777766666665554432 23334444444
Q ss_pred hcccCCCCCcchhHHHHHHH
Q psy4020 182 TNTETSKNVGNTILYETVLS 201 (530)
Q Consensus 182 ~~~~~~~n~~~aV~~eai~~ 201 (530)
.. ||.+.++-|.|+-.
T Consensus 675 ~d----KhEd~~aK~GAilA 690 (929)
T KOG2062|consen 675 ND----KHEDGMAKFGAILA 690 (929)
T ss_pred hh----hhhHHHHHHHHHHH
Confidence 42 33455677777653
No 148
>KOG2062|consensus
Probab=81.01 E-value=4.4 Score=45.37 Aligned_cols=112 Identities=14% Similarity=0.110 Sum_probs=71.5
Q ss_pred hcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHH
Q psy4020 34 IASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYI 113 (530)
Q Consensus 34 ~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yV 113 (530)
++..+-..||.+-+++...+-.+|+...-++ .---.|-||+||.-|--.|+--+.-.=......-+..+..|+..||
T Consensus 564 VsD~nDDVrRaAVialGFVl~~dp~~~~s~V---~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fV 640 (929)
T KOG2062|consen 564 VSDVNDDVRRAAVIALGFVLFRDPEQLPSTV---SLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFV 640 (929)
T ss_pred ccccchHHHHHHHHHheeeEecChhhchHHH---HHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHH
Confidence 4456788999999999998888888543333 2233578999997665554433221112233344445677999999
Q ss_pred HHHHHHHHHHHHhh-ChhhH---HhhHHHHHHhcCCCCC
Q psy4020 114 RKKAALCAYRIILK-VPELM---EIFLPATRLLLSDKNH 148 (530)
Q Consensus 114 RK~A~la~~ki~~~-~p~~i---~~~i~~l~~lL~d~n~ 148 (530)
|+-|++++.-|.-. .+.+. ..|...+.+.+.|++.
T Consensus 641 RQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 641 RQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHE 679 (929)
T ss_pred HHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhh
Confidence 99999998876543 33332 3455566666666544
No 149
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=80.42 E-value=72 Score=32.60 Aligned_cols=171 Identities=18% Similarity=0.158 Sum_probs=95.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--hhhHHh----hHHHHHHhcCCCCCcchHHHHHHHHHhhcC------CC
Q psy4020 99 ASEVERLMKSSNAYIRKKAALCAYRIILKV--PELMEI----FLPATRLLLSDKNHAIHQVKILKLLRILGK------ND 166 (530)
Q Consensus 99 ~~~V~~~l~~~~~yVRK~A~la~~ki~~~~--p~~i~~----~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~------~~ 166 (530)
.......+.+++.-.|..|+-++.++++.. |+.+.. +++.+...++.... -=|...++++..++- ..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccH
Confidence 445556678888999999999999998753 565543 44455555555443 113333444443332 22
Q ss_pred hhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHH---hccC-CChHHHHHHHHHHH-----HhccC----------CC
Q psy4020 167 VEASEAMNDILAQVATNTETSKNVGNTILYETVLSI---MDIK-SESGLRVLAVNILG-----RFLLN----------ND 227 (530)
Q Consensus 167 ~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i---~~l~-~~~~l~~~~v~~L~-----~lL~s----------~d 227 (530)
.+..+.+...|.+++.... .+..+.-.|+.++ .-+. .+.+-...+.+.+. ..+.+ .+
T Consensus 124 ~ei~~~~~~~L~~~l~d~s----~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSS----ASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred HHHHHHHHHHHHHHHhCCc----cchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCc
Confidence 3344555566666665431 1223333444332 1222 23332332222222 12221 12
Q ss_pred chhHHHHHHHHHHHhccChH-----HHHHHHHHHhhhccCCcHHHHHHHHHH
Q psy4020 228 KNIRYVALNTLLRTVYIDTS-----AVQRHRNTILECLKDPDVSIRRRALEL 274 (530)
Q Consensus 228 ~niry~aL~~L~~l~~~~p~-----~~~~~~~~i~~~l~d~d~~Ir~~aL~l 274 (530)
+.+.-.+|..-..|+..-|. .++.+...+..+|.++|..+|.-|=+.
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEa 251 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEA 251 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 46888899988888765443 346677788889999999988765443
No 150
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=80.20 E-value=4.6 Score=42.42 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhhcC---CCChhhhhHHHHHHhcCC---ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy4020 58 DVHLLITNSLKNDLN---SSTQFVVGLALCTLGAIA---SPEMSRDLASEVERLMKSSNAYIRKKAALCA 121 (530)
Q Consensus 58 e~~~L~~Nsl~kDL~---s~n~~vr~lALr~l~~i~---~~el~~~l~~~V~~~l~~~~~yVRK~A~la~ 121 (530)
++.-...+.+.-||+ +..|..++-|++++...+ .++....+.+.+.++|.+++.-|+.-||.|+
T Consensus 301 ~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 445556777777877 677999999999998766 5788889999999999999999999999985
No 151
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.06 E-value=4.9 Score=43.71 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=88.0
Q ss_pred HHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHh-hcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhc-
Q psy4020 30 CLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKN-DLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMK- 107 (530)
Q Consensus 30 vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~k-DL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~- 107 (530)
|-++..+.+..+|--|-+.+..-+-.....- ++.++.. -.++.|.-||-.|..+|+-++-.+ +.+.....++|.
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTgn~~--vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--~~~lv~tvelLs~ 596 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTGNLG--VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--RDLLVGTVELLSE 596 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCCcch--hHhhhheeecccCchHHHHHHHHheeeeEecC--cchhhHHHHHhhh
Confidence 5568888888888887665554332222111 2233333 256789999999999988876432 122333334444
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhh---HHHHHHHHHHHhhc
Q psy4020 108 SSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEA---SEAMNDILAQVATN 183 (530)
Q Consensus 108 ~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~---~~~l~~iL~~~l~~ 183 (530)
+.|++||-..+.++.-.+.-.. ....++.+..+..|.+..|-|-..+-.=..+.+.+|+. -..+.+-+.+++..
T Consensus 597 shN~hVR~g~AvaLGiacag~G--~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~ 673 (926)
T COG5116 597 SHNFHVRAGVAVALGIACAGTG--DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVD 673 (926)
T ss_pred ccchhhhhhhHHHhhhhhcCCc--cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhh
Confidence 5589999887777764433222 23466777778889888887777666655555554432 12334444444443
No 152
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=79.69 E-value=7.5 Score=35.06 Aligned_cols=85 Identities=9% Similarity=0.047 Sum_probs=51.9
Q ss_pred cchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHH------HHHHHHhhhccC-C
Q psy4020 191 GNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQ------RHRNTILECLKD-P 263 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~------~~~~~i~~~l~d-~ 263 (530)
+.++.++.+-.|-.= +.--+.|+..|.+-|.++++++++.+|..|..++......|. ++...+..++.+ .
T Consensus 17 dw~~il~icD~I~~~---~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~ 93 (144)
T cd03568 17 NWGLILDVCDKVKSD---ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRV 93 (144)
T ss_pred CHHHHHHHHHHHhcC---CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccC
Confidence 556666666555321 112345777777777889999999999999888876554432 222333333443 4
Q ss_pred cHHHHHHHHHHHHhc
Q psy4020 264 DVSIRRRALELSFAL 278 (530)
Q Consensus 264 d~~Ir~~aL~ll~~l 278 (530)
+..||.+.++++...
T Consensus 94 ~~~Vk~kil~li~~W 108 (144)
T cd03568 94 HPTVKEKLREVVKQW 108 (144)
T ss_pred CHHHHHHHHHHHHHH
Confidence 555666666555543
No 153
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=79.57 E-value=70 Score=31.96 Aligned_cols=226 Identities=15% Similarity=0.127 Sum_probs=116.8
Q ss_pred CChhhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHH-----hh-ChhhHHhhHHHHHHhcCC-----C-CCcc--hHHH
Q psy4020 90 ASPEMSRDLASEVERLMKSSN-AYIRKKAALCAYRII-----LK-VPELMEIFLPATRLLLSD-----K-NHAI--HQVK 154 (530)
Q Consensus 90 ~~~el~~~l~~~V~~~l~~~~-~yVRK~A~la~~ki~-----~~-~p~~i~~~i~~l~~lL~d-----~-n~~V--~qi~ 154 (530)
++.++++.+..-+...+...+ .++.+-|- -+|.+- +. ..+..-.|+.+..++++. . .+.. ++.+
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~-~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELAR-VCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 345566666666666653333 33333322 222222 12 334445788877777633 1 1122 7888
Q ss_pred HHHHHHhh--cCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccC---CCch
Q psy4020 155 ILKLLRIL--GKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLN---NDKN 229 (530)
Q Consensus 155 iL~lL~~l--~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s---~d~n 229 (530)
++++|..- ...+++..++..+.+..+-. +.. .-+.+.+=.++.+.. ..+.+ .+-+.|.+++.+ .+.|
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~--e~~--~~~~~~~L~l~il~~-~~~~~---~~~~~L~~mi~~~~~~e~~ 157 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLES--EYG--NKPEVFLLKLEILLK-SFDEE---EYEEILMRMIRSVDHSESN 157 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHH--hCC--CCcHHHHHHHHHHhc-cCChh---HHHHHHHHHHHhcccccch
Confidence 89888753 23344444444455544322 111 023455577777666 22222 223344444433 4555
Q ss_pred hHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcH--HHHHHHHHHHHhccChh--hHHHHHHHHHHHhhh----cCch
Q psy4020 230 IRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDV--SIRRRALELSFALVNSA--NVRSMMKELLIFLEK----SEPD 301 (530)
Q Consensus 230 iry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~--~Ir~~aL~ll~~l~n~~--Nv~~Iv~eL~~yl~~----~d~~ 301 (530)
+.. ++..+..+....|.....+...++.-.-++.. .+.+..+..++-..+.+ +-...++.+.+++.. ...+
T Consensus 158 ~~~-~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ 236 (278)
T PF08631_consen 158 FDS-ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQ 236 (278)
T ss_pred HHH-HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCC
Confidence 554 46677888888887665556555543222222 57777677766655532 334446666666652 3445
Q ss_pred hhhhhHHHHHHH----------HHhhCCCchhHH
Q psy4020 302 FKAHCSSNIVLC----------AERFAPNKRWHL 325 (530)
Q Consensus 302 ~~~~~i~~I~~l----------a~k~~~~~~~~v 325 (530)
+-.+...++..+ +.+|....+||-
T Consensus 237 ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 237 LSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 555555555544 344666666773
No 154
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=79.49 E-value=2.2 Score=29.85 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=29.6
Q ss_pred HHHHHhccChHHHH--HHHHHHhhhccCCcHHHHHHHHHHH
Q psy4020 237 TLLRTVYIDTSAVQ--RHRNTILECLKDPDVSIRRRALELS 275 (530)
Q Consensus 237 ~L~~l~~~~p~~~~--~~~~~i~~~l~d~d~~Ir~~aL~ll 275 (530)
.|..++..+|.++. .....+..++.|+++++|.-|++++
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45667778887763 3455666788999999999999874
No 155
>KOG1967|consensus
Probab=78.00 E-value=47 Score=38.51 Aligned_cols=199 Identities=17% Similarity=0.130 Sum_probs=106.8
Q ss_pred HHhhc-CCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-Hhh--ChhhHHhhHHHHHHh
Q psy4020 67 LKNDL-NSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRI-ILK--VPELMEIFLPATRLL 142 (530)
Q Consensus 67 l~kDL-~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki-~~~--~p~~i~~~i~~l~~l 142 (530)
+-|-| .-.+|..-.+|.+++..+.+|++-.......-=.+.|.+ -++|.+-.+--|+ |+. +.+.+ |.+.+.
T Consensus 801 v~KaLl~R~~~~s~~ia~klld~Ls~~~~g~~aa~~fsiim~D~~-~~~~r~~~a~~riLykQRfF~~iv----P~l~~~ 875 (1030)
T KOG1967|consen 801 VTKALLLRNHPESSEIAEKLLDLLSGPSTGSPAAKLFSIIMSDSN-PLLKRKGHAEPRILYKQRFFCDIV----PILVSK 875 (1030)
T ss_pred HHHHHHHcCCcccchHHHHHHHhcCCccccchHHHhhHhhhccCh-HHhhhccccchhHHHHHHHHHhhH----HHHHHH
Confidence 33433 456778889999999999998887666655554555554 4566666666543 332 33333 334443
Q ss_pred cCCCCCcchHHHHHHHHHhhcCCChh--hHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccC-CChHH----HHHH
Q psy4020 143 LSDKNHAIHQVKILKLLRILGKNDVE--ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIK-SESGL----RVLA 215 (530)
Q Consensus 143 L~d~n~~V~qi~iL~lL~~l~~~~~~--~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~-~~~~l----~~~~ 215 (530)
.. .-++-.....+..|......-|. ....+.+++--+++.... .+..|..++.++|-.+- ..+.+ ....
T Consensus 876 ~~-t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~---~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tl 951 (1030)
T KOG1967|consen 876 FE-TAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSM---PDVIVRVSTLRTIPMLLTESETLQTEHLSTL 951 (1030)
T ss_pred hc-cCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCC---CccchhhhHhhhhhHHHHhccccchHHHhHH
Confidence 33 22222222334555444333332 222233333333332221 13445566666653321 11222 2223
Q ss_pred HHHHHHhccCCCch---hHHHHHHHHHHHhccChH-HHHHHH----HHHhhhccCCcHHHHHHHHHH
Q psy4020 216 VNILGRFLLNNDKN---IRYVALNTLLRTVYIDTS-AVQRHR----NTILECLKDPDVSIRRRALEL 274 (530)
Q Consensus 216 v~~L~~lL~s~d~n---iry~aL~~L~~l~~~~p~-~~~~~~----~~i~~~l~d~d~~Ir~~aL~l 274 (530)
+..+..+=.++|+| +|-.||+.|..+..+-|. .+..++ ..+..+|+|+-+-+|+.|.+.
T Consensus 952 vp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 952 VPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 33343333345544 899999999999885552 233333 345568888888999999884
No 156
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=77.31 E-value=1.1e+02 Score=33.00 Aligned_cols=187 Identities=14% Similarity=0.092 Sum_probs=102.4
Q ss_pred cchhHHHHHHHHhccC-CChHHHHHHH-----HHHHHhccCC-----CchhHHHHHHHHHHHhccChH----HHHHH---
Q psy4020 191 GNTILYETVLSIMDIK-SESGLRVLAV-----NILGRFLLNN-----DKNIRYVALNTLLRTVYIDTS----AVQRH--- 252 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~-~~~~l~~~~v-----~~L~~lL~s~-----d~niry~aL~~L~~l~~~~p~----~~~~~--- 252 (530)
+..+..||.||++++- .++..++.++ ..+...|... +.++.|+.++.|-.+....+. +++.|
T Consensus 45 ~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~ 124 (446)
T PF10165_consen 45 DPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGV 124 (446)
T ss_pred ChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhH
Confidence 5679999999998753 3444444333 3355555433 789999999887666543332 22221
Q ss_pred --HH-HHhhhcc-------------CCcHHHHHHHHHHHHhc----------cChhhHHHHHHHHHHHhhh---c--Cch
Q psy4020 253 --RN-TILECLK-------------DPDVSIRRRALELSFAL----------VNSANVRSMMKELLIFLEK---S--EPD 301 (530)
Q Consensus 253 --~~-~i~~~l~-------------d~d~~Ir~~aL~ll~~l----------~n~~Nv~~Iv~eL~~yl~~---~--d~~ 301 (530)
.. .+..+++ ..+...-..+|.++|++ -....+..++.-|..++.. . -.+
T Consensus 125 ~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~ 204 (446)
T PF10165_consen 125 ELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDP 204 (446)
T ss_pred HHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchh
Confidence 11 1112222 12455678889999988 3444555566666655211 1 234
Q ss_pred hhhhhHHHHHHHH----H------------hhCCCchhHHHHHHHHHHHhhhhhhcch--hhhHHHHHHHHHHhhcCcch
Q psy4020 302 FKAHCSSNIVLCA----E------------RFAPNKRWHLDTLLKVLVANLLGFSNRA--LRDQRRALELSFALVNSANV 363 (530)
Q Consensus 302 ~~~~~i~~I~~la----~------------k~~~~~~~~vd~Ll~lL~~~~~~~v~~a--~eiq~~a~e~~~ll~~~p~~ 363 (530)
....+|.++..+- . .+......+++.++++|...+....... ..+.-....+..+.+.....
T Consensus 205 ~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~ 284 (446)
T PF10165_consen 205 PHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREV 284 (446)
T ss_pred hHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHH
Confidence 5666767666541 1 1123455788999999998553331100 01111123345555555677
Q ss_pred HHHHHhh-ccCCCCC
Q psy4020 364 RSMMKEL-LIFLEKS 377 (530)
Q Consensus 364 r~~ile~-l~~l~~~ 377 (530)
|..+.+. ||..++.
T Consensus 285 Rk~lr~~lLP~~~Dr 299 (446)
T PF10165_consen 285 RKYLRARLLPPDKDR 299 (446)
T ss_pred HHHHHHHhCCChhhc
Confidence 7777744 4444443
No 157
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=76.06 E-value=9.4 Score=33.43 Aligned_cols=46 Identities=15% Similarity=0.033 Sum_probs=39.2
Q ss_pred ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhH
Q psy4020 91 SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFL 136 (530)
Q Consensus 91 ~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i 136 (530)
++.-+..+...+.+-|++++|+|+.||+-++-++...-++....|+
T Consensus 32 s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~ 77 (122)
T cd03572 32 SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKREL 77 (122)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHH
Confidence 6677889999999999999999999999999999888776555444
No 158
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=75.99 E-value=50 Score=33.60 Aligned_cols=112 Identities=20% Similarity=0.234 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH----hhHHHHHHhcCC----CCCcchHHHHHHHHHhhcCCChhh
Q psy4020 98 LASEVERLMKSSNAYIRKKAALCAYRIILKVPELME----IFLPATRLLLSD----KNHAIHQVKILKLLRILGKNDVEA 169 (530)
Q Consensus 98 l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~----~~i~~l~~lL~d----~n~~V~qi~iL~lL~~l~~~~~~~ 169 (530)
...+..+.+.++++|+.-+|+..+..+....+.... ++++.+.+.+++ .+.++ |-..++.|..+.+. ++.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~-~~~av~~L~~LL~~-~~~ 183 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSEL-QYIAVQCLQNLLRS-KEY 183 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH----HHHHHHHHHHHTS-HHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcch-HHHHHHHHHHHhCc-chh
Confidence 344555688889999999999999999887654332 455555555543 23333 34446666666543 222
Q ss_pred HH-----HHHHHHHHHhhcc-cCCCCCcchhHHHHHHHHhccCCChHH
Q psy4020 170 SE-----AMNDILAQVATNT-ETSKNVGNTILYETVLSIMDIKSESGL 211 (530)
Q Consensus 170 ~~-----~l~~iL~~~l~~~-~~~~n~~~aV~~eai~~i~~l~~~~~l 211 (530)
.. .....+..++... ..+++.+.-+.|+++-++--++-+++.
T Consensus 184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~ 231 (312)
T PF03224_consen 184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEI 231 (312)
T ss_dssp HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHH
Confidence 21 2223333344110 011123556999999998777776643
No 159
>KOG2274|consensus
Probab=75.84 E-value=1.6e+02 Score=34.23 Aligned_cols=219 Identities=16% Similarity=0.160 Sum_probs=125.1
Q ss_pred hhHHHHHHHHHHhhcCC-CChhhhhHHHHHHhcCCC-----hhhHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHhhCh
Q psy4020 57 QDVHLLITNSLKNDLNS-STQFVVGLALCTLGAIAS-----PEMSRDLA-SEVERLMKSSNAYIRKKAALCAYRIILKVP 129 (530)
Q Consensus 57 ~e~~~L~~Nsl~kDL~s-~n~~vr~lALr~l~~i~~-----~el~~~l~-~~V~~~l~~~~~yVRK~A~la~~ki~~~~p 129 (530)
.+...-.++.+++++.+ ..|..-+.|+-+++...+ +.+.+... ..+--+..|..|++|-+|+.+..-..+..+
T Consensus 444 dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v 523 (1005)
T KOG2274|consen 444 DDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV 523 (1005)
T ss_pred HHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCcee
Confidence 35666778889998854 578888888888886543 44444433 334444557789999988876654442211
Q ss_pred --hhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHH-----hhcccCCCCCcch---hHHHHH
Q psy4020 130 --ELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQV-----ATNTETSKNVGNT---ILYETV 199 (530)
Q Consensus 130 --~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~-----l~~~~~~~n~~~a---V~~eai 199 (530)
+..+.+++.+..+..+....|+ ..+++.|...+..||+....+-..+.+. +++++ .+- ..-++.
T Consensus 524 l~~~~p~ild~L~qlas~~s~evl-~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~-----DP~V~~~~qd~f 597 (1005)
T KOG2274|consen 524 LLSLQPMILDGLLQLASKSSDEVL-VLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSE-----DPQVASLAQDLF 597 (1005)
T ss_pred ccccchHHHHHHHHHcccccHHHH-HHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcC-----CchHHHHHHHHH
Confidence 2334667777777777666652 3456777777777776543333222221 22221 222 222333
Q ss_pred HHHhccCCC-hHHHHHHHHHHHHhccCCC----chhHHHHHHHHHHHhccChH-----HHHHHHHHHhhh-ccCCcHHHH
Q psy4020 200 LSIMDIKSE-SGLRVLAVNILGRFLLNND----KNIRYVALNTLLRTVYIDTS-----AVQRHRNTILEC-LKDPDVSIR 268 (530)
Q Consensus 200 ~~i~~l~~~-~~l~~~~v~~L~~lL~s~d----~niry~aL~~L~~l~~~~p~-----~~~~~~~~i~~~-l~d~d~~Ir 268 (530)
+-+++.... ..+...++..+...+..++ +....++++-|..+++..|. ++.....-+..| +.++|...-
T Consensus 598 ~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tl 677 (1005)
T KOG2274|consen 598 EELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETL 677 (1005)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHH
Confidence 333332221 2234556666666665444 77888899988888876542 223333444455 445566666
Q ss_pred HHHHHHHHhccCh
Q psy4020 269 RRALELSFALVNS 281 (530)
Q Consensus 269 ~~aL~ll~~l~n~ 281 (530)
..+=|++-++.+.
T Consensus 678 Q~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 678 QNATECLRALISV 690 (1005)
T ss_pred HhHHHHHHHHHhc
Confidence 6666666655543
No 160
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=75.51 E-value=25 Score=38.49 Aligned_cols=127 Identities=19% Similarity=0.146 Sum_probs=81.9
Q ss_pred cCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCC--ChhhhhHHHHHH---hcC---CChhhHHHHHHH----H
Q psy4020 35 ASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSS--TQFVVGLALCTL---GAI---ASPEMSRDLASE----V 102 (530)
Q Consensus 35 ~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~--n~~vr~lALr~l---~~i---~~~el~~~l~~~----V 102 (530)
.++.+..|-+.||.=+..+....+.. ...+...+.++ +.-.|.+|+.++ ..+ ..+.++..+.+. .
T Consensus 295 a~~~lq~kIL~~L~kS~~Aa~~~~~~---~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g 371 (501)
T PF13001_consen 295 ASPRLQEKILSLLSKSVIAATSFPNI---LQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQG 371 (501)
T ss_pred CCHHHHHHHHHHHHHhHHHHhCCccH---HHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcC
Confidence 34566778888887776665443322 23344467777 778899999999 333 245555444444 4
Q ss_pred HHHhc--------CCCHHHHHHHHHHHHHHHhhChhhHH---hhHHHHHHhcCCCCCcc---hHHHHHHHHHhhcC
Q psy4020 103 ERLMK--------SSNAYIRKKAALCAYRIILKVPELME---IFLPATRLLLSDKNHAI---HQVKILKLLRILGK 164 (530)
Q Consensus 103 ~~~l~--------~~~~yVRK~A~la~~ki~~~~p~~i~---~~i~~l~~lL~d~n~~V---~qi~iL~lL~~l~~ 164 (530)
.+.+. ..+.-.|..|+-|+..+.++.|+++. .++..+.+-|.+..+.+ .|=.+..++..|..
T Consensus 372 ~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 372 WPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 45552 23788999999999999999999884 35666666666666655 44445555555543
No 161
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=75.50 E-value=33 Score=30.77 Aligned_cols=86 Identities=14% Similarity=0.139 Sum_probs=54.4
Q ss_pred cchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHH------HHHHHHhhhccC--
Q psy4020 191 GNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQ------RHRNTILECLKD-- 262 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~------~~~~~i~~~l~d-- 262 (530)
+.+...|.+-.|-. .. .--+.|+..|.+-|.++++++.+.+|..|-.+++.-...|. .+...+..++..
T Consensus 18 dw~~ileicD~In~-~~--~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~ 94 (139)
T cd03567 18 DWEAIQAFCEQINK-EP--EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKY 94 (139)
T ss_pred CHHHHHHHHHHHHc-CC--ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhcccc
Confidence 56677777766632 22 22345777788888899999999999999888876543332 233344444431
Q ss_pred ----CcHHHHHHHHHHHHhcc
Q psy4020 263 ----PDVSIRRRALELSFALV 279 (530)
Q Consensus 263 ----~d~~Ir~~aL~ll~~l~ 279 (530)
.+..||.+.|+++..-+
T Consensus 95 ~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 95 LGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 35567777766665433
No 162
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=74.11 E-value=92 Score=30.51 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=37.5
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhC-------hhhHH------hhHHHHHHhcCCCCCcchHHHHHHHHHh
Q psy4020 105 LMKSSNAYIRKKAALCAYRIILKV-------PELME------IFLPATRLLLSDKNHAIHQVKILKLLRI 161 (530)
Q Consensus 105 ~l~~~~~yVRK~A~la~~ki~~~~-------p~~i~------~~i~~l~~lL~d~n~~V~qi~iL~lL~~ 161 (530)
+++|.++.|.|+|+.|...+|+.. ++.-+ .+.+.+.+++.+.++|| .+..++++..
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gv-k~~~iKFle~ 69 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGV-KLAAIKFLER 69 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHH-HHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchH-HHHHHHHHHH
Confidence 478899999999999999999853 22112 34456667778888887 3344455443
No 163
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=74.08 E-value=3 Score=26.84 Aligned_cols=27 Identities=37% Similarity=0.212 Sum_probs=22.3
Q ss_pred HHHHHhhcCCCChhhhhHHHHHHhcCC
Q psy4020 64 TNSLKNDLNSSTQFVVGLALCTLGAIA 90 (530)
Q Consensus 64 ~Nsl~kDL~s~n~~vr~lALr~l~~i~ 90 (530)
.+.+.+-++|+++.||-.|..+++.+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467888899999999999999998753
No 164
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=73.77 E-value=55 Score=29.36 Aligned_cols=86 Identities=20% Similarity=0.174 Sum_probs=52.4
Q ss_pred cchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHH------HHHHHHhhhcc-CC
Q psy4020 191 GNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQ------RHRNTILECLK-DP 263 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~------~~~~~i~~~l~-d~ 263 (530)
+.+...|.+-.|-.=.. --+-++..|.+-|.++++|+++.+|..|..++..-...|. ++...+..++. ..
T Consensus 21 dw~~ileicD~In~~~~---~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~ 97 (142)
T cd03569 21 DLASILEICDMIRSKDV---QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTK 97 (142)
T ss_pred CHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccC
Confidence 55666666665532111 2345777888888889999999999999888876433222 22333333333 34
Q ss_pred cHHHHHHHHHHHHhcc
Q psy4020 264 DVSIRRRALELSFALV 279 (530)
Q Consensus 264 d~~Ir~~aL~ll~~l~ 279 (530)
+..+|.+.|+++..-+
T Consensus 98 ~~~Vk~kil~li~~W~ 113 (142)
T cd03569 98 NEEVRQKILELIQAWA 113 (142)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5566666666665433
No 165
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=73.76 E-value=1.3e+02 Score=32.06 Aligned_cols=201 Identities=16% Similarity=0.202 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHh----hHHHHHHhcCCCCCcchHHHHHHHHHhhcCC-Chh
Q psy4020 94 MSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEI----FLPATRLLLSDKNHAIHQVKILKLLRILGKN-DVE 168 (530)
Q Consensus 94 l~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~----~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~-~~~ 168 (530)
+-...+..+..++.+++|.-|...-..+.++|.+.++.-.. +...+.+.+.+.....+-..+|+++..+... ...
T Consensus 130 i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~p 209 (409)
T PF01603_consen 130 IDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVP 209 (409)
T ss_dssp S-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS
T ss_pred cCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCC
Confidence 44567777888999999999999999999999988876543 3344455555444444455778888766543 111
Q ss_pred hHHHHHHHHHHHhhcccCCCCC--cchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhcc-C
Q psy4020 169 ASEAMNDILAQVATNTETSKNV--GNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYI-D 245 (530)
Q Consensus 169 ~~~~l~~iL~~~l~~~~~~~n~--~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~-~ 245 (530)
..++....+..++=-.-..++. =..-+..|+..++ ..++.+...++..+.++==..++--.-.-|.-+..+... .
T Consensus 210 lk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~--~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~ 287 (409)
T PF01603_consen 210 LKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFL--EKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLP 287 (409)
T ss_dssp --HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHH--HH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--
T ss_pred CcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH--HhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcC
Confidence 2222233333332111001100 1123344444443 245555555566665554344555566667777777764 3
Q ss_pred hHHHHHHH----HHHhhhccCCcHHHHHHHHHHHHh-----ccChhhHHHHHHHHHHHhhh
Q psy4020 246 TSAVQRHR----NTILECLKDPDVSIRRRALELSFA-----LVNSANVRSMMKELLIFLEK 297 (530)
Q Consensus 246 p~~~~~~~----~~i~~~l~d~d~~Ir~~aL~ll~~-----l~n~~Nv~~Iv~eL~~yl~~ 297 (530)
|..+.+.. ..+-.|+.++...|..+||.+.-+ +. .+|...|+.-+..-+.+
T Consensus 288 ~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li-~~~~~~i~p~i~~~L~~ 347 (409)
T PF01603_consen 288 PEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLI-SQNSRVILPIIFPALYR 347 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHH-HCTHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHH-HhChHHHHHHHHHHHHH
Confidence 44444333 344468889999999999876321 11 25566666666666554
No 166
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=73.50 E-value=82 Score=29.62 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=39.8
Q ss_pred cchhHHHHHHHHhcc---C----CChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccC
Q psy4020 191 GNTILYETVLSIMDI---K----SESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYID 245 (530)
Q Consensus 191 ~~aV~~eai~~i~~l---~----~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~ 245 (530)
+.+++-++.|++..+ . -..++....++.+..++.++|+|++-.+|..+..+....
T Consensus 115 ~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 115 SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 345555555554432 1 145777788888888999999999999999998887654
No 167
>KOG2956|consensus
Probab=73.25 E-value=1.4e+02 Score=32.21 Aligned_cols=187 Identities=16% Similarity=0.159 Sum_probs=102.1
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhh-----HHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhh---
Q psy4020 99 ASEVERLMKSS-NAYIRKKAALCAYRIILKVPEL-----MEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEA--- 169 (530)
Q Consensus 99 ~~~V~~~l~~~-~~yVRK~A~la~~ki~~~~p~~-----i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~--- 169 (530)
+.+..+.+.+. ..-=||-|..-+.++....... ..+++..+.+.|.|..........||+|+..++..|.-
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 33344444443 4444566655577776544222 23445566677777333333445578888777665432
Q ss_pred --HHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhcc-C-CChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccC
Q psy4020 170 --SEAMNDILAQVATNTETSKNVGNTILYETVLSIMDI-K-SESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYID 245 (530)
Q Consensus 170 --~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l-~-~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~ 245 (530)
...+.+.|..- ++..+.|.-+|....... . ..| .+++..+..+|.+-|...--.++..+.++.++-
T Consensus 368 stE~ai~K~Leaa-------~ds~~~v~~~Aeed~~~~las~~P---~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l 437 (516)
T KOG2956|consen 368 STEIAICKVLEAA-------KDSQDEVMRVAEEDCLTTLASHLP---LQCIVNISPLILTADEPRAVAVIKMLTKLFERL 437 (516)
T ss_pred hHHHHHHHHHHHH-------hCCchhHHHHHHHHHHHHHHhhCc---hhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhc
Confidence 11222333221 222445555554432221 1 122 234555555665667777788888888888753
Q ss_pred -hHHHHHHHHHH----hhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcC
Q psy4020 246 -TSAVQRHRNTI----LECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSE 299 (530)
Q Consensus 246 -p~~~~~~~~~i----~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d 299 (530)
-+-+...+.+| +...++...++|+.++-.|.+|++.== ++++..|++.-.
T Consensus 438 ~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG----~~~mePhL~~Lt 492 (516)
T KOG2956|consen 438 SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG----MEEMEPHLEQLT 492 (516)
T ss_pred CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh----HHhhhhHhhhcc
Confidence 33333334444 444456677899999999998876321 257777776543
No 168
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=72.70 E-value=28 Score=31.04 Aligned_cols=80 Identities=21% Similarity=0.255 Sum_probs=52.3
Q ss_pred HHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC---ChhhH-----HHHHHHHHHHhcCC--CHH--H
Q psy4020 46 YLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA---SPEMS-----RDLASEVERLMKSS--NAY--I 113 (530)
Q Consensus 46 YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~---~~el~-----~~l~~~V~~~l~~~--~~y--V 113 (530)
-+.+.-..+.+++-.--+..+|+|-|.++||.+.-+||..+-.+. .+.+. ..+...+.+++.++ .+. |
T Consensus 26 ~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~V 105 (140)
T PF00790_consen 26 ILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPV 105 (140)
T ss_dssp HHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHH
Confidence 344444555556666788899999999999999999987765432 12222 33566677766654 233 8
Q ss_pred HHHHHHHHHHHH
Q psy4020 114 RKKAALCAYRII 125 (530)
Q Consensus 114 RK~A~la~~ki~ 125 (530)
|+++.-.+..-.
T Consensus 106 k~k~l~ll~~W~ 117 (140)
T PF00790_consen 106 KEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988775554433
No 169
>KOG0168|consensus
Probab=72.68 E-value=1.9e+02 Score=33.55 Aligned_cols=175 Identities=18% Similarity=0.136 Sum_probs=103.4
Q ss_pred HHHHhhcCCC-ChhhhhHHHHHHhc---CCChhh-----HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHH-
Q psy4020 65 NSLKNDLNSS-TQFVVGLALCTLGA---IASPEM-----SRDLASEVERLMKSS-NAYIRKKAALCAYRIILKVPELME- 133 (530)
Q Consensus 65 Nsl~kDL~s~-n~~vr~lALr~l~~---i~~~el-----~~~l~~~V~~~l~~~-~~yVRK~A~la~~ki~~~~p~~i~- 133 (530)
+.|...|+.. +|...--||.-||. +.+++. ++.++|.+..+|+|. ++.+--.|+-|++.++...|....
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 5556666554 88888888888886 344443 588999999999996 799999999999999999998653
Q ss_pred ----hhHHHHHHhcCC-CCCcchHHHHHHHHHhhcCCChhhH---------HHHHHHHHHHhhcccCCCCCcchhHHHHH
Q psy4020 134 ----IFLPATRLLLSD-KNHAIHQVKILKLLRILGKNDVEAS---------EAMNDILAQVATNTETSKNVGNTILYETV 199 (530)
Q Consensus 134 ----~~i~~l~~lL~d-~n~~V~qi~iL~lL~~l~~~~~~~~---------~~l~~iL~~~l~~~~~~~n~~~aV~~eai 199 (530)
+.+|.+.+-|.. ..-.| .-..|+.|.++.+..|... -.++|++.-.+++. .-|++-.
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDv-AEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~------AlaiaaN-- 320 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDV-AEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRV------ALAIAAN-- 320 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHH-HHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHH------HHHHHHH--
Confidence 355555544322 11122 2234666666666555421 12233333222221 2233333
Q ss_pred HHHhccCC-ChHHHHHHHHHHHHhccCCC-chhHHHHHHHHHHHh---ccChHHHH
Q psy4020 200 LSIMDIKS-ESGLRVLAVNILGRFLLNND-KNIRYVALNTLLRTV---YIDTSAVQ 250 (530)
Q Consensus 200 ~~i~~l~~-~~~l~~~~v~~L~~lL~s~d-~niry~aL~~L~~l~---~~~p~~~~ 250 (530)
+.-.+.+ +.....-++..|..+|...| .-+-++++ ++.+++ +.+|+.++
T Consensus 321 -~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~i-c~~ri~d~f~h~~~kLd 374 (1051)
T KOG0168|consen 321 -CCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCI-CLTRIADGFQHGPDKLD 374 (1051)
T ss_pred -HHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHH-HHHHHHHhcccChHHHH
Confidence 3334544 34556667788888886433 33444433 344444 45666553
No 170
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=72.44 E-value=15 Score=34.51 Aligned_cols=67 Identities=22% Similarity=0.256 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhccCCCchhHHHHHHHHHHHhc---cChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccCh
Q psy4020 212 RVLAVNILGRFLLNNDKNIRYVALNTLLRTVY---IDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNS 281 (530)
Q Consensus 212 ~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~---~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~ 281 (530)
.+.-.+.+.++..+++..+|+.|++.+..+.+ .||.. +...++-+..|++.+||.+|..++..+..+
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~---cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ---CVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH---HHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 33334444455567888899999988887775 46653 455666666788889999998888877654
No 171
>KOG0211|consensus
Probab=71.52 E-value=1.4e+02 Score=34.45 Aligned_cols=253 Identities=15% Similarity=0.124 Sum_probs=137.5
Q ss_pred HHHHHhhcCCCChhhhhHHHHHHhcCCChh----hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--ChhhHHhhHH
Q psy4020 64 TNSLKNDLNSSTQFVVGLALCTLGAIASPE----MSRDLASEVERLMKSSNAYIRKKAALCAYRIILK--VPELMEIFLP 137 (530)
Q Consensus 64 ~Nsl~kDL~s~n~~vr~lALr~l~~i~~~e----l~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~--~p~~i~~~i~ 137 (530)
+..+.+++.+.+-.-|-.+.+.++++.... .-..+.|.+.+.+ +...-|+..++.-+..+... .|+....+.+
T Consensus 84 ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~ 162 (759)
T KOG0211|consen 84 IAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLP 162 (759)
T ss_pred HHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHHHHhhH
Confidence 345556666555555656666666655321 2356788888888 77888888887776655443 3666667777
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhh-cCCChh-hHHHHHHHHHHHhhcccCCCCCcch-hHHHHHHHHhccCCC-hHHHH
Q psy4020 138 ATRLLLSDKNHAIHQVKILKLLRIL-GKNDVE-ASEAMNDILAQVATNTETSKNVGNT-ILYETVLSIMDIKSE-SGLRV 213 (530)
Q Consensus 138 ~l~~lL~d~n~~V~qi~iL~lL~~l-~~~~~~-~~~~l~~iL~~~l~~~~~~~n~~~a-V~~eai~~i~~l~~~-~~l~~ 213 (530)
.+..+..+...+|-+-. +..+... +...++ ..+.+..++...... +...+...+ .+|. ......+ ..+..
T Consensus 163 ~le~l~~~eet~vr~k~-ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~-d~~~sr~sacglf~----~~~~~~~~~~vk~ 236 (759)
T KOG0211|consen 163 PLELLATVEETGVREKA-VESLLKVAVGLPKEKLREHLVPLLKRLATG-DWFQSRLSACGLFG----KLYVSLPDDAVKR 236 (759)
T ss_pred HHHhhhHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHccch-hhhhcchhhhhhhH----HhccCCChHHHHH
Confidence 77777766666663322 2222222 222211 122333333322211 111100111 1111 1122222 33444
Q ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHhccChHH-H-HHHHHHHhhhccCCcHHHHHHHHHHHHhccChhh-----HHH
Q psy4020 214 LAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSA-V-QRHRNTILECLKDPDVSIRRRALELSFALVNSAN-----VRS 286 (530)
Q Consensus 214 ~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~-~-~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~N-----v~~ 286 (530)
..-.....+.....+++|-.+-+.+..++..-+.. . ......+..+..|+--++|..|.+-+..+..--+ ...
T Consensus 237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~ 316 (759)
T KOG0211|consen 237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKS 316 (759)
T ss_pred HHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhh
Confidence 44556667777889999999999998888754432 1 2233445556666666788877776665443322 234
Q ss_pred HHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchh
Q psy4020 287 MMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRW 323 (530)
Q Consensus 287 Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~ 323 (530)
+.+++.+...+.+...+..+...-..+..-+.++..|
T Consensus 317 ~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~ 353 (759)
T KOG0211|consen 317 LTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATR 353 (759)
T ss_pred hhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCc
Confidence 5555555555555555666666666666666554333
No 172
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=71.45 E-value=9.2 Score=26.08 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q psy4020 98 LASEVERLMKSSNAYIRKKAALCAYRII 125 (530)
Q Consensus 98 l~~~V~~~l~~~~~yVRK~A~la~~ki~ 125 (530)
.++.+.+++.+.++-||+.|+-|+..+.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6788899999999999999999998764
No 173
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=71.07 E-value=1.3e+02 Score=30.93 Aligned_cols=216 Identities=17% Similarity=0.145 Sum_probs=120.4
Q ss_pred hhhhHHHHHHhcCCChhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhC-hhhHHhhHHHHHHhcCCCCCcchHHH
Q psy4020 77 FVVGLALCTLGAIASPEMSRDLASEVERLMKS-SNAYIRKKAALCAYRIILKV-PELMEIFLPATRLLLSDKNHAIHQVK 154 (530)
Q Consensus 77 ~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~-~~~yVRK~A~la~~ki~~~~-p~~i~~~i~~l~~lL~d~n~~V~qi~ 154 (530)
..|.+....|+.+....+...+...+...+.. .|.-....++-++.+-+... .+.-+..++.+..-+.|+.+.+-...
T Consensus 2 d~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w 81 (339)
T PF12074_consen 2 DQRVLHASMLSSLPSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAW 81 (339)
T ss_pred cHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHH
Confidence 35667777777777655777777777777765 57877777777777666554 55556777888888999998885555
Q ss_pred HHHHHHhhc-CCChh-------hHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHh--cc-----------------CC
Q psy4020 155 ILKLLRILG-KNDVE-------ASEAMNDILAQVATNTETSKNVGNTILYETVLSIM--DI-----------------KS 207 (530)
Q Consensus 155 iL~lL~~l~-~~~~~-------~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~--~l-----------------~~ 207 (530)
+..+...+. ..+.. ....+.+.+.....+...+ ..+..+.-|.-++. .. ++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 159 (339)
T PF12074_consen 82 LLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQS--AQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDP 159 (339)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCc--cccccHHHHHHHHHhccccchhhhhhhhhhhhhccCC
Confidence 555555543 11111 1233444454444443221 11111111111111 00 01
Q ss_pred ChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHH-----HHHHHHHhhhccCC--cHHHHHHHHHHHHhccC
Q psy4020 208 ESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAV-----QRHRNTILECLKDP--DVSIRRRALELSFALVN 280 (530)
Q Consensus 208 ~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~-----~~~~~~i~~~l~d~--d~~Ir~~aL~ll~~l~n 280 (530)
.+... .--+.+.++ .+.+-..-.++.+..+...++... ...-..+++++-++ ...+|+.|++.+..+..
T Consensus 160 kps~l-l~~kvyskl---~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~ 235 (339)
T PF12074_consen 160 KPSFL-LSEKVYSKL---ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYA 235 (339)
T ss_pred Ccchh-cCHHHHhcc---CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 11100 000112221 344445555666666665444322 23344556666666 78999999999998654
Q ss_pred hh---hHHHHHHHHHHHhhhc
Q psy4020 281 SA---NVRSMMKELLIFLEKS 298 (530)
Q Consensus 281 ~~---Nv~~Iv~eL~~yl~~~ 298 (530)
.. =...++.++-+++...
T Consensus 236 ~~~~~l~~~li~~l~~~l~~~ 256 (339)
T PF12074_consen 236 SNPELLSKSLISGLWKWLSSS 256 (339)
T ss_pred hChHHHHHHHHHHHHHHHHhc
Confidence 32 3456778888888653
No 174
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=71.03 E-value=13 Score=32.61 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=35.7
Q ss_pred HHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhh
Q psy4020 237 TLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSAN 283 (530)
Q Consensus 237 ~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~N 283 (530)
-|.++...++..+..-...+...|++.++.||.++|.+|-.+|...+
T Consensus 24 Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 24 EIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 45555556666676666677778888889999999999988887654
No 175
>KOG2137|consensus
Probab=70.23 E-value=1e+02 Score=34.79 Aligned_cols=175 Identities=18% Similarity=0.183 Sum_probs=104.0
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHH---------------------HHhccCCChH
Q psy4020 152 QVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVL---------------------SIMDIKSESG 210 (530)
Q Consensus 152 qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~---------------------~i~~l~~~~~ 210 (530)
-++.|++|--+.+.|+..+..+.+-|..+++.- ...|.+.=+. .|-+-....+
T Consensus 272 ~~~aLrfLD~l~~kdn~qKs~Flk~Ls~~ip~f------p~rv~~~kiLP~L~~el~n~~~vp~~LP~v~~i~~~~s~~~ 345 (700)
T KOG2137|consen 272 GLKALRFLDDLPQKDNSQKSSFLKGLSKLIPTF------PARVLFQKILPTLVAELVNTKMVPIVLPLVLLIAEGLSQNE 345 (700)
T ss_pred hhhhhhhcccccccCcHHHHHHHHHHHHhhccC------CHHHHHHhhhhHHHHHhccccccccccchhhhhhhccchhh
Confidence 346677777777778877767776666655432 2233333332 1211111111
Q ss_pred HHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHhcc-ChHHHHH-HHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHH
Q psy4020 211 LRVLAVNILGRFLL-NNDKNIRYVALNTLLRTVYI-DTSAVQR-HRNTILECLKDPDVSIRRRALELSFALVNSANVRSM 287 (530)
Q Consensus 211 l~~~~v~~L~~lL~-s~d~niry~aL~~L~~l~~~-~p~~~~~-~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~I 287 (530)
........|...+. .....+..+.++++..|.++ +++-+.. ...-+++++++.|..|..++|.++-..++.=-+..+
T Consensus 346 ~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~v 425 (700)
T KOG2137|consen 346 FGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFV 425 (700)
T ss_pred hhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHH
Confidence 22233344444454 44556788888888888765 4444544 455666799999999999999988765543222222
Q ss_pred H----HHHHH-HhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 288 M----KELLI-FLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 288 v----~eL~~-yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
= ..+.+ ++...+..+|..++.+++.++.+- |...++|.++-++..
T Consensus 426 k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l--D~~~v~d~~lpi~~~ 475 (700)
T KOG2137|consen 426 KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL--DKAAVLDELLPILKC 475 (700)
T ss_pred HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHH
Confidence 2 22222 223346778888888888888554 444677777777765
No 176
>KOG1822|consensus
Probab=70.10 E-value=2.8e+02 Score=35.25 Aligned_cols=95 Identities=17% Similarity=0.081 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC----ChhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhH
Q psy4020 58 DVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA----SPEMSRDLASEVERLMKS-SNAYIRKKAALCAYRIILKVPELM 132 (530)
Q Consensus 58 e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~----~~el~~~l~~~V~~~l~~-~~~yVRK~A~la~~ki~~~~p~~i 132 (530)
++-.+..-.+..+|..+||..|+-|-.+++++. .+-.+..+.....+.+.+ ++|+-|---.+++..++|......
T Consensus 872 ~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~ 951 (2067)
T KOG1822|consen 872 EVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIG 951 (2067)
T ss_pred HHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCC
Confidence 455577778888999999999999888887754 343444445444445555 566666666677777777544433
Q ss_pred H-----hhHHHHHHhcCCCCCcchH
Q psy4020 133 E-----IFLPATRLLLSDKNHAIHQ 152 (530)
Q Consensus 133 ~-----~~i~~l~~lL~d~n~~V~q 152 (530)
. ..+..+..+-.|+++++.|
T Consensus 952 s~qhl~t~v~illal~~Ds~~p~Vq 976 (2067)
T KOG1822|consen 952 SGQHLNTSVSILLALATDSTSPVVQ 976 (2067)
T ss_pred CchhcccHHHHHHHHhhcCCCchhh
Confidence 2 3345677777888876544
No 177
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=70.07 E-value=1.1e+02 Score=29.76 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=55.7
Q ss_pred chhHHHHHHHHHHHhccChHHHHHHHHHHhhhc-cCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcCchhhhhh
Q psy4020 228 KNIRYVALNTLLRTVYIDTSAVQRHRNTILECL-KDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHC 306 (530)
Q Consensus 228 ~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l-~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~ 306 (530)
-+..|..-.++..+....|+--.+....+..|+ .+.+..++..+++.+..+| ++-+-++..-..--..+-+.+.+..+
T Consensus 98 ~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc-~~~vvd~~s~w~vl~~~l~~~~rp~v 176 (234)
T PF12530_consen 98 WECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLC-EAEVVDFYSAWKVLQKKLSLDYRPLV 176 (234)
T ss_pred HHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHhhccHHHHHHHHHHhcCCccchHH
Confidence 334455455677777777764444555666777 7888999999999999999 33344343333222233356667777
Q ss_pred HHHHHHHHHhh
Q psy4020 307 SSNIVLCAERF 317 (530)
Q Consensus 307 i~~I~~la~k~ 317 (530)
++.++.++.-+
T Consensus 177 ~~~l~~l~~l~ 187 (234)
T PF12530_consen 177 LKSLCSLFALV 187 (234)
T ss_pred HHHHHHHHHHh
Confidence 77666655443
No 178
>KOG1993|consensus
Probab=68.01 E-value=1.7e+02 Score=33.66 Aligned_cols=129 Identities=18% Similarity=0.129 Sum_probs=60.0
Q ss_pred CCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhc-ccCCCCCcchhHHH----HHHH-HhccCC-ChHHHHHHHHH
Q psy4020 146 KNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATN-TETSKNVGNTILYE----TVLS-IMDIKS-ESGLRVLAVNI 218 (530)
Q Consensus 146 ~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~-~~~~~n~~~aV~~e----ai~~-i~~l~~-~~~l~~~~v~~ 218 (530)
..+..+++++|..|+.+...=...+..+.+++..++.- ++-+. ..+-.+.| --.+ +.+... .|++.. .+.-
T Consensus 626 ~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~s-P~hv~L~EDgmeLW~~~L~n~~~l~p~ll~-L~p~ 703 (978)
T KOG1993|consen 626 EEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSS-PEHVYLLEDGMELWLTTLMNSQKLTPELLL-LFPH 703 (978)
T ss_pred ccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCC-CceeehhhhHHHHHHHHHhcccccCHHHHH-HHHH
Confidence 45677899999999877532222223455565555442 11110 11112222 1112 223222 344443 3444
Q ss_pred HHHhccCCCchhHHHHHHHHH-HHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHh
Q psy4020 219 LGRFLLNNDKNIRYVALNTLL-RTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFA 277 (530)
Q Consensus 219 L~~lL~s~d~niry~aL~~L~-~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~ 277 (530)
+.-.++.+..|++.+. ..+. -+.-.++..++.|-..|+.-+.+-=..||.+.+-.+.+
T Consensus 704 l~~~iE~ste~L~t~l-~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLk 762 (978)
T KOG1993|consen 704 LLYIIEQSTENLPTVL-MIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLK 762 (978)
T ss_pred HHHHHHhhhhhHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555555555555442 2222 22234566667777767654443323355544444433
No 179
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=67.83 E-value=91 Score=31.33 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccCh-HH---------HHHHHHHHhhhcc--------CCcHHHHHHHH
Q psy4020 211 LRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDT-SA---------VQRHRNTILECLK--------DPDVSIRRRAL 272 (530)
Q Consensus 211 l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p-~~---------~~~~~~~i~~~l~--------d~d~~Ir~~aL 272 (530)
..-.++..+..++.+.++.+|.-|+..|..+...-| .. .+-....+..|+. ++...+=..+.
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 344667778888888899999999999999987543 22 2334455666776 44455666777
Q ss_pred HHHHhc
Q psy4020 273 ELSFAL 278 (530)
Q Consensus 273 ~ll~~l 278 (530)
..+..+
T Consensus 196 ~~L~~L 201 (282)
T PF10521_consen 196 PALLSL 201 (282)
T ss_pred HHHHHH
Confidence 777776
No 180
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=67.68 E-value=1.4e+02 Score=29.83 Aligned_cols=226 Identities=16% Similarity=0.086 Sum_probs=123.6
Q ss_pred hcCCCCchhHHHHHHHHhhccC------ChhHHHHHHHHHHhhcCCCChhhh--hHHHHHHhcCC--ChhhHHHHHHHHH
Q psy4020 34 IASSRFTDKRIGYLGAMLLLDE------RQDVHLLITNSLKNDLNSSTQFVV--GLALCTLGAIA--SPEMSRDLASEVE 103 (530)
Q Consensus 34 ~~S~~~~~Krl~YL~l~~~~~~------~~e~~~L~~Nsl~kDL~s~n~~vr--~lALr~l~~i~--~~el~~~l~~~V~ 103 (530)
+.|.|...|.-|-.+++..+.. +.+..-..++.+..=+.+. +.+. --||..|.+.. .++.+..+...+.
T Consensus 8 Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~ 86 (262)
T PF14500_consen 8 LTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPALKGLLALVKMKNFSPESAVKILRSLF 86 (262)
T ss_pred hCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHHHHHHHHHHhCcCCChhhHHHHHHHHH
Confidence 4456666665443333333321 1223345555555555332 2222 12334444333 3556667777766
Q ss_pred HHhcCC--CHHHHHHHHHHHHHHHhhChhhHH----hhHHHHHHhc-CCCCCcch--HHHHHHHHHhhcCCChhhHHHHH
Q psy4020 104 RLMKSS--NAYIRKKAALCAYRIILKVPELME----IFLPATRLLL-SDKNHAIH--QVKILKLLRILGKNDVEASEAMN 174 (530)
Q Consensus 104 ~~l~~~--~~yVRK~A~la~~ki~~~~p~~i~----~~i~~l~~lL-~d~n~~V~--qi~iL~lL~~l~~~~~~~~~~l~ 174 (530)
+...-+ ..-.|..+.--+-.+...+++.+. .|+..+.++. .++||..+ --++++.+...-.. ++..+.+.
T Consensus 87 ~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-~~~~e~lF 165 (262)
T PF14500_consen 87 QNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-SEFAEDLF 165 (262)
T ss_pred HhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-chhHHHHH
Confidence 654432 456677766666666666654443 5666655555 56888762 22344443322233 45567888
Q ss_pred HHHHHHhhcccC-CCCCcchhHHHHHHHHh--ccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccC-hHHHH
Q psy4020 175 DILAQVATNTET-SKNVGNTILYETVLSIM--DIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYID-TSAVQ 250 (530)
Q Consensus 175 ~iL~~~l~~~~~-~~n~~~aV~~eai~~i~--~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~-p~~~~ 250 (530)
+++.+..+=+-+ ..|--..|--|-.+.-+ .+.+++.....++..|..=|.++.+++|-=+|++|...+..+ +..+.
T Consensus 166 d~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~ 245 (262)
T PF14500_consen 166 DVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLS 245 (262)
T ss_pred HHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHH
Confidence 888776431100 11111123333333211 234556566667777777778889999999999999888776 46688
Q ss_pred HHHHHHhhhcc
Q psy4020 251 RHRNTILECLK 261 (530)
Q Consensus 251 ~~~~~i~~~l~ 261 (530)
+|...+...++
T Consensus 246 ~~~~~iw~~lk 256 (262)
T PF14500_consen 246 PHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHH
Confidence 89888876654
No 181
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=67.35 E-value=7.9 Score=27.02 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHH
Q psy4020 96 RDLASEVERLMKSSNAYIRKKAAL 119 (530)
Q Consensus 96 ~~l~~~V~~~l~~~~~yVRK~A~l 119 (530)
+.+...|.+.+.|++|-||++|+-
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHH
Confidence 478889999999999999999864
No 182
>KOG1991|consensus
Probab=67.16 E-value=2.6e+02 Score=32.93 Aligned_cols=78 Identities=23% Similarity=0.215 Sum_probs=56.5
Q ss_pred CCChhhhhHHHHHHhcCCC------h--hhHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHh---hChhhHHhhHHHHH
Q psy4020 73 SSTQFVVGLALCTLGAIAS------P--EMSRD-LASEVERLMKSSNAYIRKKAALCAYRIIL---KVPELMEIFLPATR 140 (530)
Q Consensus 73 s~n~~vr~lALr~l~~i~~------~--el~~~-l~~~V~~~l~~~~~yVRK~A~la~~ki~~---~~p~~i~~~i~~l~ 140 (530)
..|+.-.--|||.+|++.+ | +..+. +.++|...+.++.-|.|.+|+--+.+... ++|....+.++...
T Consensus 429 ~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~ 508 (1010)
T KOG1991|consen 429 NKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTH 508 (1010)
T ss_pred ccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Confidence 3455566678888888762 2 33444 77889999999999999999988877763 35667778888888
Q ss_pred HhcC-CCCCcc
Q psy4020 141 LLLS-DKNHAI 150 (530)
Q Consensus 141 ~lL~-d~n~~V 150 (530)
.+|. |.+-.|
T Consensus 509 ~~l~~d~~lPV 519 (1010)
T KOG1991|consen 509 NCLLNDNELPV 519 (1010)
T ss_pred HHhccCCcCch
Confidence 8887 544444
No 183
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=66.58 E-value=28 Score=29.72 Aligned_cols=67 Identities=21% Similarity=0.202 Sum_probs=45.2
Q ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHH---HHHhhhc---------cCCcHHHHHHHHHHHHhcc
Q psy4020 213 VLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHR---NTILECL---------KDPDVSIRRRALELSFALV 279 (530)
Q Consensus 213 ~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~---~~i~~~l---------~d~d~~Ir~~aL~ll~~l~ 279 (530)
+.++..|.+-|.++++++.|-+|..|..++..-.+-|..+. ....+++ .+.+..||.++++++...+
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 44666777777888999999999999999887554433221 1111221 2447789999999887654
No 184
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=66.22 E-value=5.2 Score=44.87 Aligned_cols=75 Identities=20% Similarity=0.180 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHh
Q psy4020 59 VHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEI 134 (530)
Q Consensus 59 ~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~ 134 (530)
+.-...+.+.+-....++.-+-.+|++|+|++.++.++.+.+.+..-- +.+..+|..|+.|+-++-..+|+.+..
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v~~ 561 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKVRE 561 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHHHH
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHHHH
Confidence 333455566655667788889999999999999987776665433221 348899999999999887777876654
No 185
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=66.11 E-value=73 Score=29.00 Aligned_cols=128 Identities=13% Similarity=0.091 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHh-hHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHH------HHHHHHHHH
Q psy4020 108 SSNAYIRKKAALCAYRIILKVPELMEI-FLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASE------AMNDILAQV 180 (530)
Q Consensus 108 ~~~~yVRK~A~la~~ki~~~~p~~i~~-~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~------~l~~iL~~~ 180 (530)
...+.+|..|.+|+.|++...++-..+ +.+.+..++.+.+.. -.+.++..+..+-|..|+... .+.+.+...
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d-~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMD-SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC-HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccch-hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 457889999999999998766654443 344455555443332 355667777777787777532 233444443
Q ss_pred hhcccCCCCCcchhHHHHHHHHhccCCChHH----HHHHHHHHHHhcc-CCCch-hHHHHHHHHHH
Q psy4020 181 ATNTETSKNVGNTILYETVLSIMDIKSESGL----RVLAVNILGRFLL-NNDKN-IRYVALNTLLR 240 (530)
Q Consensus 181 l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l----~~~~v~~L~~lL~-s~d~n-iry~aL~~L~~ 240 (530)
..+. ..+..+...+++++..--.+..- .+.+++.|...+. +++.. +|..++-.|.+
T Consensus 95 ~~~~----~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 95 ASRK----SKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HH-C----TS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred Hhcc----cCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 3311 12445555666655443333322 3345566777764 34444 67777766554
No 186
>KOG1243|consensus
Probab=66.01 E-value=73 Score=35.86 Aligned_cols=87 Identities=17% Similarity=0.255 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccC-hHHH-HHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHH
Q psy4020 211 LRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYID-TSAV-QRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMM 288 (530)
Q Consensus 211 l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~-p~~~-~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv 288 (530)
..+..+..|.+++.+.|.-+|..-|+.+.+.+.+- ++.+ .+-..++...+.|.|..+|..++..+.-++..=|-..+=
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln 406 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN 406 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc
Confidence 45567778889999999999999999999988763 3444 233455556678899999999998888777665555555
Q ss_pred HHHHHHhhh
Q psy4020 289 KELLIFLEK 297 (530)
Q Consensus 289 ~eL~~yl~~ 297 (530)
.|+++|+.+
T Consensus 407 ~Ellr~~ar 415 (690)
T KOG1243|consen 407 GELLRYLAR 415 (690)
T ss_pred HHHHHHHHh
Confidence 788888854
No 187
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=65.52 E-value=74 Score=28.48 Aligned_cols=78 Identities=17% Similarity=0.051 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh-----hH-HhhHHHHHHhcCCCC-----CcchHHHHHHHHHhh
Q psy4020 94 MSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPE-----LM-EIFLPATRLLLSDKN-----HAIHQVKILKLLRIL 162 (530)
Q Consensus 94 l~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~-----~i-~~~i~~l~~lL~d~n-----~~V~qi~iL~lL~~l 162 (530)
-..+....+++-|.|++|.|--.|+.-+=-+.+.... .. ++|++.+..++.++. +.-.+-+++.++..+
T Consensus 35 ~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 35 GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 3456677788888888888877776555444444332 22 368888888886532 222566777777765
Q ss_pred c---CCChhhHH
Q psy4020 163 G---KNDVEASE 171 (530)
Q Consensus 163 ~---~~~~~~~~ 171 (530)
. +.+|...+
T Consensus 115 ~~~f~~~p~~~~ 126 (139)
T cd03567 115 TLELPHEPKIKE 126 (139)
T ss_pred HHHhcccchHHH
Confidence 4 23455433
No 188
>KOG0567|consensus
Probab=65.35 E-value=20 Score=35.61 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=28.6
Q ss_pred HHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHH
Q psy4020 64 TNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKS--SNAYIRKKAALCAYRI 124 (530)
Q Consensus 64 ~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~--~~~yVRK~A~la~~ki 124 (530)
+|+|-.-+...+..+|--+--.+|.+.+|.-++. +.+.|.+ .+|+||--|+-|+..|
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~----L~k~L~d~~E~pMVRhEaAeALGaI 247 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQLQSPAAIPS----LIKVLLDETEHPMVRHEAAEALGAI 247 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhccchhhhHH----HHHHHHhhhcchHHHHHHHHHHHhh
Confidence 4555555555555555555555555555533332 2233333 2556666665555554
No 189
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=64.68 E-value=32 Score=30.91 Aligned_cols=67 Identities=25% Similarity=0.245 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcCCCChhhhhHHHHHHhcCC----C---hhhH-HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHh
Q psy4020 60 HLLITNSLKNDLNSSTQFVVGLALCTLGAIA----S---PEMS-RDLASEVERLMK-SSNAYIRKKAALCAYRIIL 126 (530)
Q Consensus 60 ~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~----~---~el~-~~l~~~V~~~l~-~~~~yVRK~A~la~~ki~~ 126 (530)
.--++.+|+|-++++||.+.-+||..|-.+. . .+++ ..+...+.+++. ..++-||++++..+..-..
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 3457789999999999999988886554322 1 1121 334555556655 5688899997766655443
No 190
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=63.56 E-value=21 Score=33.52 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhc
Q psy4020 94 MSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLL 143 (530)
Q Consensus 94 l~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL 143 (530)
+++.++.++++.|+++++-|.++++-++-++....+-.-+.+.|...++|
T Consensus 77 vlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLL 126 (183)
T PF10274_consen 77 VLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLL 126 (183)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 45778899999999999999999999999987666655556666655543
No 191
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=63.47 E-value=74 Score=28.01 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH------HhhHHHHHHhcCCC--CCcchHHHHHHHHHhh
Q psy4020 94 MSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELM------EIFLPATRLLLSDK--NHAIHQVKILKLLRIL 162 (530)
Q Consensus 94 l~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i------~~~i~~l~~lL~d~--n~~V~qi~iL~lL~~l 162 (530)
-....+..+++-+.+++|.|...|+.-+=-+.+...+.+ ++|+..+..++..+ .+.-.+-++++++..+
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 344555666666666666666666555544444443322 25566666666543 2222345556666544
No 192
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=63.39 E-value=1.4e+02 Score=28.50 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=43.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhh
Q psy4020 100 SEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEA 169 (530)
Q Consensus 100 ~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~ 169 (530)
+.+.+...+.+.++||.|+++..+..+ ..+ .+.+...+..++.|+ +...|-.|==+|+.+++.+|+.
T Consensus 118 ~~l~~W~~s~~~W~rR~ai~~~l~~~~-~~~-~~~l~~~~~~~~~d~-e~fI~KAiGW~LRe~~k~d~~~ 184 (208)
T cd07064 118 PVMDEWSTDENFWLRRTAILHQLKYKE-KTD-TDLLFEIILANLGSK-EFFIRKAIGWALREYSKTNPDW 184 (208)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHH-ccC-HHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHhccCHHH
Confidence 445566678899999999998766433 233 223344445555554 4445767777889999998864
No 193
>KOG1949|consensus
Probab=62.69 E-value=2.8e+02 Score=31.66 Aligned_cols=72 Identities=21% Similarity=0.183 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhcCCCChhhhhHHHHHHhc---CCChhh--------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC
Q psy4020 60 HLLITNSLKNDLNSSTQFVVGLALCTLGA---IASPEM--------SRDLASEVERLMKSSNAYIRKKAALCAYRIILKV 128 (530)
Q Consensus 60 ~~L~~Nsl~kDL~s~n~~vr~lALr~l~~---i~~~el--------~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~ 128 (530)
..|.-..+-+-|+-+|-.||..|+..+-+ +++|+. .+.=...+.++|.|+-|.||..|+..++|++.++
T Consensus 172 ~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 172 YRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred HHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 34677788899999999999999887766 455655 3445667788999999999999999999998876
Q ss_pred hhh
Q psy4020 129 PEL 131 (530)
Q Consensus 129 p~~ 131 (530)
=++
T Consensus 252 We~ 254 (1005)
T KOG1949|consen 252 WEM 254 (1005)
T ss_pred HHH
Confidence 333
No 194
>KOG1293|consensus
Probab=62.61 E-value=65 Score=35.93 Aligned_cols=125 Identities=17% Similarity=0.148 Sum_probs=85.5
Q ss_pred CCCCchhHHHHHHHHhhccC---------ChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC-------ChhhHHHHH
Q psy4020 36 SSRFTDKRIGYLGAMLLLDE---------RQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA-------SPEMSRDLA 99 (530)
Q Consensus 36 S~~~~~Krl~YL~l~~~~~~---------~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~-------~~el~~~l~ 99 (530)
.+|....+.|.+.+..+.+. +.|++...+. =+.+|.-.|.+.+|-++||+. +..+....+
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvq----ll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngI 463 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQ----LLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGI 463 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHH----HhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcH
Confidence 35666667776665554321 1234433333 336788899999999999976 344456688
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH-H-----hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCC
Q psy4020 100 SEVERLMKSSNAYIRKKAALCAYRIILKVPELM-E-----IFLPATRLLLSDKNHAIHQVKILKLLRILGKN 165 (530)
Q Consensus 100 ~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i-~-----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~ 165 (530)
..+...+.++++.+|+++.-.+.++.=.+-+.. . -+...+.++.+|.+.+| |-..++++|.+.-.
T Consensus 464 d~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~V-qeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 464 DILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAV-QEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHH-HHHHHHHHHHhhcC
Confidence 889999999999999999999988743332211 1 23445677889999998 66778888887543
No 195
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=62.43 E-value=4.4e+02 Score=33.82 Aligned_cols=208 Identities=17% Similarity=0.123 Sum_probs=110.1
Q ss_pred HHHHHHhcCCC--hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH--------HhhHHHHHHhcCCC-CCc
Q psy4020 81 LALCTLGAIAS--PEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELM--------EIFLPATRLLLSDK-NHA 149 (530)
Q Consensus 81 lALr~l~~i~~--~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i--------~~~i~~l~~lL~d~-n~~ 149 (530)
.|.--+.+++. +.++..+.++..+.-.|++..|+--|+.++-++.-+.-+.- ++|+..+..++... +..
T Consensus 1119 Ia~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~e 1198 (1780)
T PLN03076 1119 IAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVE 1198 (1780)
T ss_pred HHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchH
Confidence 33444444553 56667778887777778788888888887766654432221 24666666555432 222
Q ss_pred chHHHHHHHHHhhcCCC-hh---hHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhc-----cCC-ChHHHHHHHHHH
Q psy4020 150 IHQVKILKLLRILGKND-VE---ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMD-----IKS-ESGLRVLAVNIL 219 (530)
Q Consensus 150 V~qi~iL~lL~~l~~~~-~~---~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~-----l~~-~~~l~~~~v~~L 219 (530)
| +-.+++.+..+.... .. .-+.+..++....... .. .--...|++++.|+. +.. +++....+++.|
T Consensus 1199 V-rE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~--~e-~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL 1274 (1780)
T PLN03076 1199 I-RELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDD--HK-NIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCL 1274 (1780)
T ss_pred H-HHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCc--cH-HHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHH
Confidence 2 333444443221110 01 1133444444433211 00 001246777776652 111 235567788888
Q ss_pred HHhccCC-CchhHHHHHHHHHHHhcc---C---------------------------------hHHHHHHHH----HHhh
Q psy4020 220 GRFLLNN-DKNIRYVALNTLLRTVYI---D---------------------------------TSAVQRHRN----TILE 258 (530)
Q Consensus 220 ~~lL~s~-d~niry~aL~~L~~l~~~---~---------------------------------p~~~~~~~~----~i~~ 258 (530)
..|-.+. +.|+-.-+++.|..+... . .+....... .+-.
T Consensus 1275 ~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~ 1354 (1780)
T PLN03076 1275 IAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSE 1354 (1780)
T ss_pred HHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 8887643 577777777776644110 0 000001111 1222
Q ss_pred hccCCcHHHHHHHHHHHHhcc-------ChhhHHHHHHHHH
Q psy4020 259 CLKDPDVSIRRRALELSFALV-------NSANVRSMMKELL 292 (530)
Q Consensus 259 ~l~d~d~~Ir~~aL~ll~~l~-------n~~Nv~~Iv~eL~ 292 (530)
+..|++..||..||+.|+.+. +++.|+.+.+.++
T Consensus 1355 l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VL 1395 (1780)
T PLN03076 1355 LSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVL 1395 (1780)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 334788999999999998764 3457777776544
No 196
>KOG0946|consensus
Probab=62.23 E-value=2.6e+02 Score=32.24 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=46.1
Q ss_pred HHHHhccCCCchhHHHHHHHHHHHhccChHHHHH-------HHHHHhhhccCCcHHHHHHHHHHHHhccCh-hhHHHHH
Q psy4020 218 ILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQR-------HRNTILECLKDPDVSIRRRALELSFALVNS-ANVRSMM 288 (530)
Q Consensus 218 ~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~-------~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~-~Nv~~Iv 288 (530)
.+..++...|..+|..+...+..+....|.-++. -+.+++..|.|.-.-||..++-+|..+++. +++..+|
T Consensus 126 lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlV 204 (970)
T KOG0946|consen 126 LLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLV 204 (970)
T ss_pred HHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHH
Confidence 4444555566666666666666665544432221 145677788888788999999999998854 5566555
No 197
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=61.95 E-value=13 Score=32.45 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q psy4020 99 ASEVERLMKSSNAYIRKKAALCAYRIIL 126 (530)
Q Consensus 99 ~~~V~~~l~~~~~yVRK~A~la~~ki~~ 126 (530)
-..|.+++.|+++-||+.|+.|+.++..
T Consensus 88 K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 88 KERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999864
No 198
>KOG0946|consensus
Probab=61.23 E-value=3.1e+02 Score=31.70 Aligned_cols=113 Identities=17% Similarity=0.159 Sum_probs=82.1
Q ss_pred HhhcCCCCchhHHHHHHHHhhccCChh-HHH----HHHHHHHhhcCCCChhhhhHHHHHHhcCCChh-------------
Q psy4020 32 KLIASSRFTDKRIGYLGAMLLLDERQD-VHL----LITNSLKNDLNSSTQFVVGLALCTLGAIASPE------------- 93 (530)
Q Consensus 32 kl~~S~~~~~Krl~YL~l~~~~~~~~e-~~~----L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~e------------- 93 (530)
++-+|.=+++||-+-++++-+++.-.+ +.. =.++++++|-. ||.+.+.||.+++.+-+.+
T Consensus 30 RvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~--D~E~ik~~LdTl~il~~~dd~~~v~dds~qsd 107 (970)
T KOG0946|consen 30 RVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYM--DPEIIKYALDTLLILTSHDDSPEVMDDSTQSD 107 (970)
T ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccC--CHHHHHHHHHHHHHHHhcCcchhhcccchhhh
Confidence 455778899999999999999876543 322 36788888877 5678899999999876433
Q ss_pred -----hH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-------hhHHHHHHhcCCC
Q psy4020 94 -----MS------RDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-------IFLPATRLLLSDK 146 (530)
Q Consensus 94 -----l~------~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-------~~i~~l~~lL~d~ 146 (530)
++ ++.+..+...+.+.+-|||+.|+--+..+.+.-|--+. .-+..+.++|.|.
T Consensus 108 d~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds 178 (970)
T KOG0946|consen 108 DLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS 178 (970)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence 11 34556677788888999999999888888776664332 3455666666663
No 199
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=60.97 E-value=79 Score=28.43 Aligned_cols=71 Identities=10% Similarity=0.145 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH------HhhHHHHHHhcCCCCCcchHHHHHHHHHhhc
Q psy4020 93 EMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELM------EIFLPATRLLLSDKNHAIHQVKILKLLRILG 163 (530)
Q Consensus 93 el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i------~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~ 163 (530)
.-..+.+..+++-+.|++|.|--.|+.-+--+.+.....+ ++|++.+..++.++.|.-.+-++++++..++
T Consensus 33 ~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 33 NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 3356778888889999999999888877766666665433 3799999999988644345778888887664
No 200
>KOG2933|consensus
Probab=60.10 E-value=14 Score=37.50 Aligned_cols=98 Identities=22% Similarity=0.284 Sum_probs=70.9
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHhhccCC-----hhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHH
Q psy4020 28 LECLKLIASSRFTDKRIGYLGAMLLLDER-----QDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEV 102 (530)
Q Consensus 28 ~~vikl~~S~~~~~Krl~YL~l~~~~~~~-----~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V 102 (530)
+-+++-+.+..-..=|.+...+..++..- +++-.+++--+.|-- ..|-++|.-|.++|-.+..+-.-..+.+.+
T Consensus 132 i~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~-~dnrFvreda~kAL~aMV~~vtp~~~L~~L 210 (334)
T KOG2933|consen 132 IAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKAS-QDNRFVREDAEKALVAMVNHVTPQKLLRKL 210 (334)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccchHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 34666677777777777777776666432 234445554444433 357899999988888877777777888999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHh
Q psy4020 103 ERLMKSSNAYIRKKAALCAYRIIL 126 (530)
Q Consensus 103 ~~~l~~~~~yVRK~A~la~~ki~~ 126 (530)
..++.|.+|-+|.+|++|..+...
T Consensus 211 ~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 211 IPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHHHhhhchhhhhhhhccccccce
Confidence 999999999999999999876543
No 201
>KOG1820|consensus
Probab=60.09 E-value=2.8e+02 Score=32.41 Aligned_cols=187 Identities=19% Similarity=0.136 Sum_probs=112.4
Q ss_pred HHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCCh-------hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhh
Q psy4020 59 VHLLITNSLKNDLNSSTQFVVGLALCTLGAIASP-------EMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPEL 131 (530)
Q Consensus 59 ~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~-------el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~ 131 (530)
++-=++-.+...+.|++---|-=||.-|-.+... .....+...++....|.|-.|-..|+.|+-.|...-+..
T Consensus 250 i~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 250 ILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred hhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence 3334555677777788877787777776554422 223455566666777889999999999999988876665
Q ss_pred HHh----hHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHh----
Q psy4020 132 MEI----FLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIM---- 203 (530)
Q Consensus 132 i~~----~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~---- 203 (530)
... ..+.+.+.+.|..+.+. =.++..+..++...+ ...+.+.+...+.+ .++.+--||...+-
T Consensus 330 ~~~~~~~v~p~lld~lkekk~~l~-d~l~~~~d~~~ns~~--l~~~~~~I~e~lk~------knp~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 330 FRKYAKNVFPSLLDRLKEKKSELR-DALLKALDAILNSTP--LSKMSEAILEALKG------KNPQIKGECLLLLDRKLR 400 (815)
T ss_pred hHHHHHhhcchHHHHhhhccHHHH-HHHHHHHHHHHhccc--HHHHHHHHHHHhcC------CChhhHHHHHHHHHHHHh
Confidence 543 34556666666665541 122333333433222 13344444444443 25666666555432
Q ss_pred ccC---CChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChH-HHHHHHH
Q psy4020 204 DIK---SESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTS-AVQRHRN 254 (530)
Q Consensus 204 ~l~---~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~-~~~~~~~ 254 (530)
.++ ........++..+.....+.+.++|-++++.+..+...+.+ .++++..
T Consensus 401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~ 455 (815)
T KOG1820|consen 401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLK 455 (815)
T ss_pred hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 222 12233455666677777788999999999999988876543 4444333
No 202
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.89 E-value=39 Score=37.09 Aligned_cols=103 Identities=23% Similarity=0.203 Sum_probs=61.7
Q ss_pred CCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhh-----hHHHHHHhcCCChhhHHHHHHHHHHHhcCCCH
Q psy4020 37 SRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVV-----GLALCTLGAIASPEMSRDLASEVERLMKSSNA 111 (530)
Q Consensus 37 ~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr-----~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~ 111 (530)
+.-..||-.=+.+.+..--.+|++-=.+|-+..|.. +..| ++||-..+. ++...+..+.+. .++|.+.
T Consensus 494 qhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~d---s~lRy~G~fs~alAy~GT-gn~~vv~~lLh~---avsD~nD 566 (926)
T COG5116 494 QHERIKRGLGIGFALILYGRQEMADDYINELLYDKD---SILRYNGVFSLALAYVGT-GNLGVVSTLLHY---AVSDGND 566 (926)
T ss_pred hhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCch---HHhhhccHHHHHHHHhcC-CcchhHhhhhee---ecccCch
Confidence 445567766666666655667766655666555544 4443 344444333 333333333322 3788999
Q ss_pred HHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCC-CCcc
Q psy4020 112 YIRKKAALCAYRIILKVPELMEIFLPATRLLLSDK-NHAI 150 (530)
Q Consensus 112 yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~-n~~V 150 (530)
.|||+|++|+.-++-.+|+++. ...++|.++ |+.|
T Consensus 567 DVrRAAViAlGfvc~~D~~~lv----~tvelLs~shN~hV 602 (926)
T COG5116 567 DVRRAAVIALGFVCCDDRDLLV----GTVELLSESHNFHV 602 (926)
T ss_pred HHHHHHHHheeeeEecCcchhh----HHHHHhhhccchhh
Confidence 9999999999888777887654 344555553 4444
No 203
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=58.70 E-value=48 Score=29.51 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH------HhhHHHHHHhcCCCCCcc---hHHHHHHHHHhh
Q psy4020 92 PEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELM------EIFLPATRLLLSDKNHAI---HQVKILKLLRIL 162 (530)
Q Consensus 92 ~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i------~~~i~~l~~lL~d~n~~V---~qi~iL~lL~~l 162 (530)
++-+.+....+.+-|.|++|.|.-.|+.-+=-+.+...+.+ ++|++.+..++.++.... .+-++++++..+
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 56678889999999999999999999777666666664433 268888888887665544 466667776654
Q ss_pred c
Q psy4020 163 G 163 (530)
Q Consensus 163 ~ 163 (530)
+
T Consensus 117 ~ 117 (140)
T PF00790_consen 117 A 117 (140)
T ss_dssp H
T ss_pred H
Confidence 3
No 204
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=58.01 E-value=2.3e+02 Score=29.16 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=50.2
Q ss_pred hhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCC---hhhHHHHHH-------HHHHHhcCCC
Q psy4020 41 DKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIAS---PEMSRDLAS-------EVERLMKSSN 110 (530)
Q Consensus 41 ~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~---~el~~~l~~-------~V~~~l~~~~ 110 (530)
.+..|--.+..++.+. ...+-+-|++..+.+..-|||-|..|.. ...+.++.. .+.+++..+.
T Consensus 42 ~~~~g~~l~~~iL~~~-------~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~ 114 (330)
T PF11707_consen 42 FQSYGLELIRSILQNH-------LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRK 114 (330)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhcccc
Confidence 5555555555554433 3456677777777777789888888765 455555443 2334443221
Q ss_pred -------------HHHHHHHHHHHHHHHhhCh
Q psy4020 111 -------------AYIRKKAALCAYRIILKVP 129 (530)
Q Consensus 111 -------------~yVRK~A~la~~ki~~~~p 129 (530)
+-+|..++--+..+....+
T Consensus 115 ~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~ 146 (330)
T PF11707_consen 115 KEKEKDSESSKSKPSIRTNFIRFWLSFLSSGD 146 (330)
T ss_pred ccccccccccccCcCHHHHHHHHHHHHHccCC
Confidence 2788888877777766543
No 205
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=57.93 E-value=72 Score=27.40 Aligned_cols=99 Identities=18% Similarity=0.123 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcc-CCCchhHHHHHHHHHHHhccC---hHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChh-hHHH
Q psy4020 212 RVLAVNILGRFLL-NNDKNIRYVALNTLLRTVYID---TSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSA-NVRS 286 (530)
Q Consensus 212 ~~~~v~~L~~lL~-s~d~niry~aL~~L~~l~~~~---p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~-Nv~~ 286 (530)
.......+.+.|. ++.++.|..+.-.+..++.+- ++++......+.......+. .+.++-.+..++... +.+.
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~~~ 81 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQENVDS 81 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHccccccc
Confidence 3345566677776 778889888888888887654 46666655555544444333 688899999888777 6666
Q ss_pred HHHHHHHHhhhcCchhhhhhHHHHHHHHHhh
Q psy4020 287 MMKELLIFLEKSEPDFKAHCSSNIVLCAERF 317 (530)
Q Consensus 287 Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~ 317 (530)
+=++..+.+.+.+. +...+..++++|
T Consensus 82 lp~~~~~~l~~~~~-----l~~~L~~l~~~~ 107 (121)
T PF12397_consen 82 LPRKVFKALLKLPD-----LIELLSELSEKY 107 (121)
T ss_pred CCHHHHHHHHcCcc-----HHHHHHHHHhcC
Confidence 55666666655443 555556666665
No 206
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=54.74 E-value=1.8e+02 Score=29.24 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH
Q psy4020 93 EMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELM 132 (530)
Q Consensus 93 el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i 132 (530)
+...-+.|.+..++.|.++.+|..++.|+.++..+.|...
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~ 154 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE 154 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 3456789999999999999999999999999998877644
No 207
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=54.60 E-value=1.3e+02 Score=26.53 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH------HhhHHHHHHhcCCCCCcc-hHHHHHHHHHhhc
Q psy4020 92 PEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELM------EIFLPATRLLLSDKNHAI-HQVKILKLLRILG 163 (530)
Q Consensus 92 ~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i------~~~i~~l~~lL~d~n~~V-~qi~iL~lL~~l~ 163 (530)
++-....+..+.+-|.+++|.|--.|+.-+=-+.+...+.+ +.|++.+..++.++.+.- .+-+++.++...+
T Consensus 32 ~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 32 PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 34456667778888999999988888766666665544322 368888888888766543 5667777776543
No 208
>KOG2149|consensus
Probab=54.21 E-value=1.2e+02 Score=31.89 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=42.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH----hhHHHHHHhcCCCCCcc
Q psy4020 100 SEVERLMKSSNAYIRKKAALCAYRIILKVPELME----IFLPATRLLLSDKNHAI 150 (530)
Q Consensus 100 ~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~----~~i~~l~~lL~d~n~~V 150 (530)
.++..-+.|.+.-||+.|...+-.++..+|+.+. ..++.+.++..|.+..|
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~v 115 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLV 115 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccH
Confidence 3455567899999999999999999999998765 46677778888888877
No 209
>KOG2149|consensus
Probab=54.14 E-value=1.6e+02 Score=31.08 Aligned_cols=101 Identities=21% Similarity=0.281 Sum_probs=75.0
Q ss_pred HHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhc----cCCcHHHHHHHHHHH----HhccChhhHHHHHHH
Q psy4020 219 LGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECL----KDPDVSIRRRALELS----FALVNSANVRSMMKE 290 (530)
Q Consensus 219 L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l----~d~d~~Ir~~aL~ll----~~l~n~~Nv~~Iv~e 290 (530)
|..-+.+...++|--+|..+..+...+|..+..|...++.++ -|+|-.+|.....++ +.+|-+. ....+.-
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~-~sp~~~l 141 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED-QSPMVSL 141 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh-hcchHHH
Confidence 334446788999999999999999999998888887777654 377777887666554 4455544 4445555
Q ss_pred HHHHhh----hcCchhhhhhHHHHHHHHHhhCCC
Q psy4020 291 LLIFLE----KSEPDFKAHCSSNIVLCAERFAPN 320 (530)
Q Consensus 291 L~~yl~----~~d~~~~~~~i~~I~~la~k~~~~ 320 (530)
+.-|+. .+-++.+.+..+-...+++.|||.
T Consensus 142 ~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 142 LMPYISSAMTHITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence 555654 457889999999999999999874
No 210
>KOG2021|consensus
Probab=50.82 E-value=4.5e+02 Score=30.36 Aligned_cols=73 Identities=19% Similarity=0.157 Sum_probs=44.9
Q ss_pred cCCCChhhhhHHHHHHhcCC-----ChhhHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHhh-----ChhhHHhhHHH
Q psy4020 71 LNSSTQFVVGLALCTLGAIA-----SPEMSRDLASEVE--RLMKSSNAYIRKKAALCAYRIILK-----VPELMEIFLPA 138 (530)
Q Consensus 71 L~s~n~~vr~lALr~l~~i~-----~~el~~~l~~~V~--~~l~~~~~yVRK~A~la~~ki~~~-----~p~~i~~~i~~ 138 (530)
+.|+++.|.-+=+..+-+.. ++.-++.+..... +++.|++.+||.+|..-.+|..+. .| .+++.+..
T Consensus 502 ~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvp-fie~iln~ 580 (980)
T KOG2021|consen 502 LAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVP-FIEEILNK 580 (980)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45667766555544444422 2222333333322 667788999999999888887664 23 45677778
Q ss_pred HHHhcC
Q psy4020 139 TRLLLS 144 (530)
Q Consensus 139 l~~lL~ 144 (530)
+.++|.
T Consensus 581 iqdlL~ 586 (980)
T KOG2021|consen 581 IQDLLH 586 (980)
T ss_pred HHHHHc
Confidence 888884
No 211
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=49.81 E-value=2.9e+02 Score=27.96 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=67.2
Q ss_pred ChhhhhHHHHHHhcC-CChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHH
Q psy4020 75 TQFVVGLALCTLGAI-ASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQV 153 (530)
Q Consensus 75 n~~vr~lALr~l~~i-~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi 153 (530)
.+.+..+-++.|.++ ..+++.+++...+-.++.+.. -|..+..... ...++. .|.+-+. ++...|..+ +.
T Consensus 53 ~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~--~~~~~~~~~~---~~~~~~--~~~~fl~-ll~~~D~~i-~~ 123 (312)
T PF03224_consen 53 GDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP--SRVELFLELA---KQDDSD--PYSPFLK-LLDRNDSFI-QL 123 (312)
T ss_dssp ---------HHHHHH---HHHHHHHHHHHHHHHH-SS--SSHHHHHHHH---H-TTH----HHHHHH-H-S-SSHHH-HH
T ss_pred hhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH--HHHHHHHHhc---ccccch--hHHHHHH-HhcCCCHHH-HH
Confidence 334555666777777 788888888888888777654 2333333322 222221 3333343 555555444 55
Q ss_pred HHHHHHHhhcCCChhh-H---HHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHH-----HHHHHHHHhc-
Q psy4020 154 KILKLLRILGKNDVEA-S---EAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRV-----LAVNILGRFL- 223 (530)
Q Consensus 154 ~iL~lL~~l~~~~~~~-~---~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~-----~~v~~L~~lL- 223 (530)
...++|..+....+.. . +.....+.+++.+... +.+.-+.+-|+.++..+-..++.+. ..++.+...|
T Consensus 124 ~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~--~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~ 201 (312)
T PF03224_consen 124 KAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLS--SSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILR 201 (312)
T ss_dssp HHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT---HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhc--CCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHH
Confidence 5566666554333221 1 1333444444443211 1122344555665555444443333 2344555555
Q ss_pred ----c--CCCchhHHHHHHHHHHHh
Q psy4020 224 ----L--NNDKNIRYVALNTLLRTV 242 (530)
Q Consensus 224 ----~--s~d~niry~aL~~L~~l~ 242 (530)
. +.+..+.|-++-++=.+.
T Consensus 202 ~~~~~~~~~~~Ql~Y~~ll~lWlLS 226 (312)
T PF03224_consen 202 KQATNSNSSGIQLQYQALLCLWLLS 226 (312)
T ss_dssp ---------HHHHHHHHHHHHHHHT
T ss_pred hhcccCCCCchhHHHHHHHHHHHHh
Confidence 1 234556777776665553
No 212
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=49.37 E-value=33 Score=23.26 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=10.8
Q ss_pred HHHHHhhhcCchhhhhhHHHHHHH
Q psy4020 290 ELLIFLEKSEPDFKAHCSSNIVLC 313 (530)
Q Consensus 290 eL~~yl~~~d~~~~~~~i~~I~~l 313 (530)
.|.+.+...|.+.++.++-+++.+
T Consensus 16 ~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 16 PLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 213
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=49.24 E-value=2.3e+02 Score=26.64 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhh-ChhhH----HhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhH
Q psy4020 97 DLASEVERLMKS-SNAYIRKKAALCAYRIILK-VPELM----EIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEAS 170 (530)
Q Consensus 97 ~l~~~V~~~l~~-~~~yVRK~A~la~~ki~~~-~p~~i----~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~ 170 (530)
...+-....|.. .+|| |=-|..++..+.+. .++.+ +..+..++..|+.+|+.|. +..|+.|+.+....+..-
T Consensus 38 ~~Lpif~dGL~Et~~Py-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~-~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPY-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVF-CATLKALQQLVTSSDMVG 115 (183)
T ss_pred hHHHHHHhhhhccCccH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHhhhhhh
Confidence 445555556555 4676 56677778888777 66544 4566778899999999983 456777777765555555
Q ss_pred HHHHHHHHHHhh
Q psy4020 171 EAMNDILAQVAT 182 (530)
Q Consensus 171 ~~l~~iL~~~l~ 182 (530)
+.+...+.+++.
T Consensus 116 ~aLvPyyrqLLp 127 (183)
T PF10274_consen 116 EALVPYYRQLLP 127 (183)
T ss_pred HHHHHHHHHHHH
Confidence 666655555543
No 214
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=48.96 E-value=65 Score=28.44 Aligned_cols=54 Identities=22% Similarity=0.095 Sum_probs=35.9
Q ss_pred cchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChH
Q psy4020 191 GNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTS 247 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~ 247 (530)
+.+..++.+-.|-.= +.--+.++..|.+-|.++++++++.+|..|..++.....
T Consensus 17 dw~~~l~icD~i~~~---~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~ 70 (133)
T smart00288 17 DWELILEICDLINST---PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGS 70 (133)
T ss_pred CHHHHHHHHHHHhCC---CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH
Confidence 445555655544221 222345677777777889999999999999888876443
No 215
>KOG4653|consensus
Probab=48.84 E-value=4.3e+02 Score=30.86 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=50.9
Q ss_pred hcCCCChhhhhHHHHHHhcCCC------hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH
Q psy4020 70 DLNSSTQFVVGLALCTLGAIAS------PEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELM 132 (530)
Q Consensus 70 DL~s~n~~vr~lALr~l~~i~~------~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i 132 (530)
-+.++-+.+||-||+.|..+.. -.+-+-+....+..+.|.++||-=.|+-++..+...+|+-+
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i 803 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI 803 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh
Confidence 3456778899999999998764 23345678888999999999999999998888888888744
No 216
>KOG1517|consensus
Probab=48.67 E-value=3e+02 Score=32.93 Aligned_cols=132 Identities=20% Similarity=0.132 Sum_probs=88.2
Q ss_pred HhhhhcCC-----CCCCCc-hHHHHHhhcCCCCchhHH-HHHHHHhhccCChhHHHHHHHHHHhh---------cCC---
Q psy4020 13 ERDTYLPK-----YPAHFG-QLECLKLIASSRFTDKRI-GYLGAMLLLDERQDVHLLITNSLKND---------LNS--- 73 (530)
Q Consensus 13 ~~~i~mlG-----~d~sf~-~~~vikl~~S~~~~~Krl-~YL~l~~~~~~~~e~~~L~~Nsl~kD---------L~s--- 73 (530)
.||+.| | +-.+-| |+-|+||++|+-.++|-+ +++-+++++=..+=.+-| -|| |.+
T Consensus 495 ~RFLDl-GpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dL-----vKe~g~~YF~~vL~~~~~ 568 (1387)
T KOG1517|consen 495 ARFLDL-GPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADL-----VKENGYKYFLQVLDPSQA 568 (1387)
T ss_pred HHHhcc-chhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHH-----HhccCceeEEEEecCcCC
Confidence 467764 3 223433 567999999999999975 588888887544322322 244 111
Q ss_pred CChhhhhHHHHHHhcCCCh------hh-HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhH-----HhhHHHHH
Q psy4020 74 STQFVVGLALCTLGAIASP------EM-SRDLASEVERLMKS-SNAYIRKKAALCAYRIILKVPELM-----EIFLPATR 140 (530)
Q Consensus 74 ~n~~vr~lALr~l~~i~~~------el-~~~l~~~V~~~l~~-~~~yVRK~A~la~~ki~~~~p~~i-----~~~i~~l~ 140 (530)
-++.-|++|-=.|+.|..- +. -..++..-...++| +.|..|.-.++|+.+++..+++.- ....+++.
T Consensus 569 ~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~ 648 (1387)
T KOG1517|consen 569 IPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLI 648 (1387)
T ss_pred CCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHH
Confidence 2346677776666665531 11 12345555566777 479999999999999999887632 24678889
Q ss_pred HhcCCCCCcc
Q psy4020 141 LLLSDKNHAI 150 (530)
Q Consensus 141 ~lL~d~n~~V 150 (530)
.+|.|.-+.|
T Consensus 649 ~~LsD~vpEV 658 (1387)
T KOG1517|consen 649 LLLSDPVPEV 658 (1387)
T ss_pred HHhcCccHHH
Confidence 9999988887
No 217
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=47.96 E-value=2.7e+02 Score=27.04 Aligned_cols=166 Identities=13% Similarity=0.005 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChh--hHHHHHHHHHH-------HhcCC--CHHHHHHHHHHHHHHHh
Q psy4020 58 DVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPE--MSRDLASEVER-------LMKSS--NAYIRKKAALCAYRIIL 126 (530)
Q Consensus 58 e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~e--l~~~l~~~V~~-------~l~~~--~~yVRK~A~la~~ki~~ 126 (530)
+..-+++.++..=...+....++.++|-++.+...+ ..+.+.+.+.. ...+. ...+.-..+.++.-+.+
T Consensus 34 ~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~ 113 (234)
T PF12530_consen 34 VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICC 113 (234)
T ss_pred cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHH
Confidence 555577777777666666666778888888876422 22222222222 11111 22233333566777788
Q ss_pred hChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhcc-
Q psy4020 127 KVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDI- 205 (530)
Q Consensus 127 ~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l- 205 (530)
..|+...++++.+..+|++.+..+.|..-++.+..+++.+--......+.+..-+. .+ ..+.|.-+-+..+.-+
T Consensus 114 ~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~-~~----~rp~v~~~l~~l~~l~~ 188 (234)
T PF12530_consen 114 SRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLS-LD----YRPLVLKSLCSLFALVP 188 (234)
T ss_pred hChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcC-Cc----cchHHHHHHHHHHHHhc
Confidence 89997778999999999655556667778888888884432112233444444332 11 1344554434433222
Q ss_pred --CCC----hHHHHHHHHHHHHhccCCCc
Q psy4020 206 --KSE----SGLRVLAVNILGRFLLNNDK 228 (530)
Q Consensus 206 --~~~----~~l~~~~v~~L~~lL~s~d~ 228 (530)
..+ +.+...++..+-++..+.+.
T Consensus 189 ~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 189 QGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred cccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 112 33444555566666655553
No 218
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=47.54 E-value=53 Score=29.91 Aligned_cols=109 Identities=17% Similarity=0.107 Sum_probs=69.4
Q ss_pred CChhhhhHHHHHHhcCCC---hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH------hhHHHHHHhcC
Q psy4020 74 STQFVVGLALCTLGAIAS---PEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME------IFLPATRLLLS 144 (530)
Q Consensus 74 ~n~~vr~lALr~l~~i~~---~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~------~~i~~l~~lL~ 144 (530)
..+-+|+.|+=.++++-. .+.-+.+...+...+.+...--...|+.++.-+|.-.|+... .+.+.+.++..
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 456788888888877641 222344556666666554333445677888888998998763 56777777776
Q ss_pred -CCCCcchHHHHHHHHHhhcCCChh---hHHHHHHHHHHHhh
Q psy4020 145 -DKNHAIHQVKILKLLRILGKNDVE---ASEAMNDILAQVAT 182 (530)
Q Consensus 145 -d~n~~V~qi~iL~lL~~l~~~~~~---~~~~l~~iL~~~l~ 182 (530)
+.+....|..++++|..-|..... ..+...+.|....+
T Consensus 97 ~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~ 138 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYK 138 (157)
T ss_dssp -CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc
Confidence 444555788999999876654321 23445566666654
No 219
>KOG2213|consensus
Probab=47.05 E-value=3.8e+02 Score=28.43 Aligned_cols=77 Identities=9% Similarity=-0.005 Sum_probs=64.2
Q ss_pred HHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhc
Q psy4020 30 CLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMK 107 (530)
Q Consensus 30 vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~ 107 (530)
|++. .-.....||++--++..|++.=|+++--++++-..=+.+.+--||--|+|-|...+.-+...-+.+.+.++|+
T Consensus 30 il~~-~k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 30 ILKA-VKGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred HHHH-hhcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 4553 3356789999999999999999998888888876666778889999999999999988888888888888887
No 220
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=46.88 E-value=30 Score=31.98 Aligned_cols=27 Identities=37% Similarity=0.470 Sum_probs=21.4
Q ss_pred HHHHhhhccCCcHHHHHHHHHHHHhcc
Q psy4020 253 RNTILECLKDPDVSIRRRALELSFALV 279 (530)
Q Consensus 253 ~~~i~~~l~d~d~~Ir~~aL~ll~~l~ 279 (530)
...|..|+.++++.+|..++++|..+|
T Consensus 160 v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 160 VNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 455778899999999999999998876
No 221
>KOG1820|consensus
Probab=46.87 E-value=4.5e+02 Score=30.77 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=42.0
Q ss_pred ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHhh----HHHHHHhcCCCCCcc
Q psy4020 91 SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVP-ELMEIF----LPATRLLLSDKNHAI 150 (530)
Q Consensus 91 ~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p-~~i~~~----i~~l~~lL~d~n~~V 150 (530)
-.++...+.+.+...+.|++.-=|+.|+-.+..+....+ +..+.+ ..-+.-.+.|.|-.|
T Consensus 247 ~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v 311 (815)
T KOG1820|consen 247 RVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINV 311 (815)
T ss_pred hhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhH
Confidence 345667788889999999999999999999999887655 333222 223334456666666
No 222
>KOG4413|consensus
Probab=46.75 E-value=3.5e+02 Score=28.00 Aligned_cols=216 Identities=13% Similarity=0.115 Sum_probs=120.8
Q ss_pred ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHH--------hhHHHHHHhcCCCCCcchHHHHHHHHHh
Q psy4020 91 SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVP-ELME--------IFLPATRLLLSDKNHAIHQVKILKLLRI 161 (530)
Q Consensus 91 ~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p-~~i~--------~~i~~l~~lL~d~n~~V~qi~iL~lL~~ 161 (530)
...+++.+.+.+++.|.+.+.-|+--|+-.+.++....- ..+. +.++.+.+++...|..|... .++-+.+
T Consensus 76 gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkA-Aiesikr 154 (524)
T KOG4413|consen 76 GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKA-AIESIKR 154 (524)
T ss_pred chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHH-HHHHHHH
Confidence 346778999999999999999999999888888876432 1221 34455555666666666321 1223333
Q ss_pred hcCCChhhHHHH-----HHHHH--HHhhcccCCCCCcchhHHHHHHHHhccCC-ChHHHHH-----HHHHHHHhcc-CCC
Q psy4020 162 LGKNDVEASEAM-----NDILA--QVATNTETSKNVGNTILYETVLSIMDIKS-ESGLRVL-----AVNILGRFLL-NND 227 (530)
Q Consensus 162 l~~~~~~~~~~l-----~~iL~--~~l~~~~~~~n~~~aV~~eai~~i~~l~~-~~~l~~~-----~v~~L~~lL~-s~d 227 (530)
+... |...+.+ +|-+. .+.-+ -+.-+.+-....|+++.+ ++....- .++.|.+=+. ..|
T Consensus 155 ialf-paaleaiFeSellDdlhlrnlaak------cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteD 227 (524)
T KOG4413|consen 155 IALF-PAALEAIFESELLDDLHLRNLAAK------CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTED 227 (524)
T ss_pred HHhc-HHHHHHhcccccCChHHHhHHHhh------hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcc
Confidence 2221 1111100 01000 00000 033444444445555432 2221111 1223333333 478
Q ss_pred chhHHHHHHHHHHHhccCh--HHH-H----HHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHH-----HHHHHHh
Q psy4020 228 KNIRYVALNTLLRTVYIDT--SAV-Q----RHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMM-----KELLIFL 295 (530)
Q Consensus 228 ~niry~aL~~L~~l~~~~p--~~~-~----~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv-----~eL~~yl 295 (530)
.-++.-+++....++..+. +.+ | +....|+. =.|.|++=+.+++-...++-...|+-+++ +.+.-++
T Consensus 228 tLVianciElvteLaeteHgreflaQeglIdlicnIIs-GadsdPfekfralmgfgkffgkeaimdvseeaicealiiai 306 (524)
T KOG4413|consen 228 TLVIANCIELVTELAETEHGREFLAQEGLIDLICNIIS-GADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAI 306 (524)
T ss_pred eeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhh-CCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHH
Confidence 8888888888888876432 222 1 11222322 23778899999999999888888887744 3333333
Q ss_pred h-------hcCchhhhhhHHHHHHHHH
Q psy4020 296 E-------KSEPDFKAHCSSNIVLCAE 315 (530)
Q Consensus 296 ~-------~~d~~~~~~~i~~I~~la~ 315 (530)
. .-|++....+|+++|.+..
T Consensus 307 dgsfEmiEmnDpdaieaAiDalGilGS 333 (524)
T KOG4413|consen 307 DGSFEMIEMNDPDAIEAAIDALGILGS 333 (524)
T ss_pred HhhHHhhhcCCchHHHHHHHHHHhccC
Confidence 2 2378888888999888764
No 223
>KOG4535|consensus
Probab=46.50 E-value=2.4e+02 Score=30.71 Aligned_cols=112 Identities=14% Similarity=0.173 Sum_probs=65.3
Q ss_pred CCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC--ChhhH-------------------
Q psy4020 37 SRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA--SPEMS------------------- 95 (530)
Q Consensus 37 ~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~--~~el~------------------- 95 (530)
.+--.||..|=|...+.++.++.- ....+.--|+++|+--|++||..++.|- +..+.
T Consensus 24 ~~~~~~~~~ygyw~~~~pd~~~~g--~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a 101 (728)
T KOG4535|consen 24 IKSIEKKVLYGYWSAFIPDTPELG--SPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIA 101 (728)
T ss_pred HhhhhhhhhhceeeeecCCCCCCC--CceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHH
Confidence 445678889999998887766531 1111223578999999999999887653 11111
Q ss_pred ---HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCh------hhHHhhHHHHHHhcCCCCCcc
Q psy4020 96 ---RDLASEVERLMKS-SNAYIRKKAALCAYRIILKVP------ELMEIFLPATRLLLSDKNHAI 150 (530)
Q Consensus 96 ---~~l~~~V~~~l~~-~~~yVRK~A~la~~ki~~~~p------~~i~~~i~~l~~lL~d~n~~V 150 (530)
..+.+.+.-.|.. .+|-+--.-+-|+..+....| .++.+|...++.+++.+|+.|
T Consensus 102 ~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v 166 (728)
T KOG4535|consen 102 CSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNV 166 (728)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCCh
Confidence 1222222222221 233333334455555555444 234467888888998888887
No 224
>KOG1243|consensus
Probab=46.32 E-value=19 Score=40.34 Aligned_cols=87 Identities=16% Similarity=0.088 Sum_probs=57.2
Q ss_pred HHHHHhhcCCCChhhhhHHHHHHhcCC----ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hh-hHHhhHH
Q psy4020 64 TNSLKNDLNSSTQFVVGLALCTLGAIA----SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKV-PE-LMEIFLP 137 (530)
Q Consensus 64 ~Nsl~kDL~s~n~~vr~lALr~l~~i~----~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~-p~-~i~~~i~ 137 (530)
.-.+.|-+.+++..+|..=|+-+-... .+.+-..+++++..++.|.++.+|-.++.++..+..+- +. +--+.+.
T Consensus 332 ~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr 411 (690)
T KOG1243|consen 332 IPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLR 411 (690)
T ss_pred hhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHH
Confidence 345666667777788887777665533 34445668899999999999999988888888776542 22 2224455
Q ss_pred HHHHhcCCCCCcc
Q psy4020 138 ATRLLLSDKNHAI 150 (530)
Q Consensus 138 ~l~~lL~d~n~~V 150 (530)
.+..+=.|.+.++
T Consensus 412 ~~ar~q~d~~~~i 424 (690)
T KOG1243|consen 412 YLARLQPDEHGGI 424 (690)
T ss_pred HHHhhCccccCcc
Confidence 5555555655554
No 225
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=46.25 E-value=37 Score=22.37 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q psy4020 98 LASEVERLMKSSNAYIRKKAALCAYRII 125 (530)
Q Consensus 98 l~~~V~~~l~~~~~yVRK~A~la~~ki~ 125 (530)
..+.+.+++.+.++.+++.|+.++..+.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4667778888889999999999988763
No 226
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=46.08 E-value=30 Score=35.35 Aligned_cols=67 Identities=18% Similarity=0.294 Sum_probs=53.1
Q ss_pred HHHHHHHHhccCCCch-hHHHHHHHHHHHhccChHH---HHHH--HHHHhhhccCCcHHHHHHHHHHHHhccC
Q psy4020 214 LAVNILGRFLLNNDKN-IRYVALNTLLRTVYIDTSA---VQRH--RNTILECLKDPDVSIRRRALELSFALVN 280 (530)
Q Consensus 214 ~~v~~L~~lL~s~d~n-iry~aL~~L~~l~~~~p~~---~~~~--~~~i~~~l~d~d~~Ir~~aL~ll~~l~n 280 (530)
..+..|..++.++.+| .--+|+.-+..++...|+. +..+ ...|+++++++|+.||-.||.-++.+.+
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 3556788888888888 6778888899999888864 3333 5678999999999999999998877654
No 227
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=45.28 E-value=84 Score=28.14 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=49.7
Q ss_pred cchhHHHHHHHHhccCCChHHHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHhccChHHHH------HHHHH-Hhhhcc-
Q psy4020 191 GNTILYETVLSIMDIKSESGLRVLAVNILGRFLL-NNDKNIRYVALNTLLRTVYIDTSAVQ------RHRNT-ILECLK- 261 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~-s~d~niry~aL~~L~~l~~~~p~~~~------~~~~~-i~~~l~- 261 (530)
+.+..+|.+-.|-. ..+ --+.|+..|.+-|. ++++++.+.+|..|..++..-..-|. .+... +...+.
T Consensus 18 dw~~ileicD~In~-~~~--~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~ 94 (141)
T cd03565 18 DWGLNMEICDIINE-TED--GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINP 94 (141)
T ss_pred CHHHHHHHHHHHhC-CCC--cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcc
Confidence 56677776666532 222 12456666766665 56899999999988888876544333 22222 233332
Q ss_pred --CCcHHHHHHHHHHHHhcc
Q psy4020 262 --DPDVSIRRRALELSFALV 279 (530)
Q Consensus 262 --d~d~~Ir~~aL~ll~~l~ 279 (530)
+.+..+|.+.++++...+
T Consensus 95 ~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 95 KNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred cCCCcHHHHHHHHHHHHHHH
Confidence 233456666666665443
No 228
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=45.14 E-value=48 Score=31.78 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=47.8
Q ss_pred CCCChhhhhHHHH-HHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHH
Q psy4020 72 NSSTQFVVGLALC-TLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPAT 139 (530)
Q Consensus 72 ~s~n~~vr~lALr-~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l 139 (530)
.|.|...|=.|+- ++..+...+ .+.+..-+..++.|++-||+|.-.=++-.+.+.+|+.+..|+..=
T Consensus 125 ~s~~~W~rR~ai~~~l~~~~~~~-~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~~~ 192 (208)
T cd07064 125 TDENFWLRRTAILHQLKYKEKTD-TDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFVAAH 192 (208)
T ss_pred cCCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHh
Confidence 4566666655543 333333322 356667788899999999999878888888899999999888543
No 229
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=44.87 E-value=42 Score=20.73 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=16.6
Q ss_pred hhhHHHHHHhcCCChhhHHHHHHHH
Q psy4020 78 VVGLALCTLGAIASPEMSRDLASEV 102 (530)
Q Consensus 78 vr~lALr~l~~i~~~el~~~l~~~V 102 (530)
||.-|.+.|+.+++++-++.+...+
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 5677888888888876666555543
No 230
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=44.37 E-value=86 Score=28.13 Aligned_cols=49 Identities=29% Similarity=0.344 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCC
Q psy4020 95 SRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDK 146 (530)
Q Consensus 95 ~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~ 146 (530)
.+.+......+|.++++-|.|.|+-|++.- ++|. +...-+.+..+++|.
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~--k~~~-l~pY~d~L~~Lldd~ 63 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTW--KDPY-LTPYKDNLENLLDDK 63 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CcHH-HHhHHHHHHHHcCcc
Confidence 467888888999999999999999999863 3554 345667788887774
No 231
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=43.97 E-value=1.2e+02 Score=27.88 Aligned_cols=118 Identities=12% Similarity=0.091 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhChhhHHhhHHHHHHhc-CCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhH
Q psy4020 117 AALCAYRIILKVPELMEIFLPATRLLL-SDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTIL 195 (530)
Q Consensus 117 A~la~~ki~~~~p~~i~~~i~~l~~lL-~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~ 195 (530)
+.-=+.++|+.+++...+.++.+.+.+ .+.+..+.| .+++|..+++..|-.-.+-.+-+..++.+...-......=+
T Consensus 38 G~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~--~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~l 115 (158)
T PF14676_consen 38 GIQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQ--YIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGL 115 (158)
T ss_dssp HHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HH--HHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhH--HHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 334456677777776666666555443 333443433 36777777666554322112222222222211100011234
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHH
Q psy4020 196 YETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTL 238 (530)
Q Consensus 196 ~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L 238 (530)
+.|+.-++.. ++.++...+-.|.+-+-+++.+.|-.|..-+
T Consensus 116 l~Al~PLi~~--s~~lrd~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 116 LRALLPLIKF--SPSLRDSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp HHHHHHHHTT---HHHHHHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CHHHHHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 4555555544 3567777777787777778888887776543
No 232
>KOG0413|consensus
Probab=43.81 E-value=6.4e+02 Score=30.13 Aligned_cols=67 Identities=15% Similarity=0.259 Sum_probs=51.3
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHH---HHHHHHhhhccCCcHHHHHHHHHHHHhccCh
Q psy4020 215 AVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQ---RHRNTILECLKDPDVSIRRRALELSFALVNS 281 (530)
Q Consensus 215 ~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~---~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~ 281 (530)
....|+.+..+.-.-+|--++..|.++....|.+++ .....+...++|.+..+..+|+.++.++..+
T Consensus 617 ~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p 686 (1529)
T KOG0413|consen 617 VLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTP 686 (1529)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence 345566666666677899999999999999998773 3344555667888888999999988887766
No 233
>KOG2933|consensus
Probab=42.53 E-value=1.2e+02 Score=30.85 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=65.3
Q ss_pred HHHHHHHHhhccCC-hhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCC--hhh----HHHHHHHHHHHhcCCCHHHHH
Q psy4020 43 RIGYLGAMLLLDER-QDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIAS--PEM----SRDLASEVERLMKSSNAYIRK 115 (530)
Q Consensus 43 rl~YL~l~~~~~~~-~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~--~el----~~~l~~~V~~~l~~~~~yVRK 115 (530)
+.-|+....|-.-+ +| ++.+...+-|.+.+=...+-+|.+|.++.. +|+ ...++-.|.+.+++...-|-|
T Consensus 71 ~~e~~~sk~l~~fd~p~---~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~Vsr 147 (334)
T KOG2933|consen 71 SVEYIVSKNLSPFDDPE---AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSR 147 (334)
T ss_pred cHHHhhhcccCccCcHH---HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 56688777776533 44 455777788888887778888777775542 333 355667777888899999999
Q ss_pred HHHHHHHHHHhhChhhHHh
Q psy4020 116 KAALCAYRIILKVPELMEI 134 (530)
Q Consensus 116 ~A~la~~ki~~~~p~~i~~ 134 (530)
+|++|+.-||..+-+.+..
T Consensus 148 aA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 148 AACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999877665544
No 234
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=42.03 E-value=1.1e+02 Score=27.40 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=23.9
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccC
Q psy4020 216 VNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKD 262 (530)
Q Consensus 216 v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d 262 (530)
-+.+..+|.++|+++|-.||+++... .+| .+.+|...+.++++|
T Consensus 19 ~~~~~~LL~~~d~~vQklAL~cll~~--k~~-~l~pY~d~L~~Lldd 62 (141)
T PF07539_consen 19 YDALLRLLSSRDPEVQKLALDCLLTW--KDP-YLTPYKDNLENLLDD 62 (141)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh--CcH-HHHhHHHHHHHHcCc
Confidence 34555666666677777776665443 223 344555555544443
No 235
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=41.54 E-value=7.9e+02 Score=30.91 Aligned_cols=270 Identities=15% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHhhccCChhHHHHHHHHHHhhcCCCCh--hhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q psy4020 49 AMLLLDERQDVHLLITNSLKNDLNSSTQ--FVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIIL 126 (530)
Q Consensus 49 l~~~~~~~~e~~~L~~Nsl~kDL~s~n~--~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~ 126 (530)
+..++.+++++..=+..+|-+=--++.. .+|..++..+.++...+ .+.++..+.+.++..+. ...+-.+-+-++
T Consensus 232 L~~ll~~~~~L~~~iLd~Ls~L~Ls~~~l~~vr~~vl~~L~s~~~e~-LP~lirFLL~s~t~~da---~evI~~LR~~L~ 307 (1426)
T PF14631_consen 232 LLELLQENPELTVPILDALSNLNLSPELLEEVREKVLEKLSSVDLED-LPVLIRFLLQSITPSDA---VEVISELRENLD 307 (1426)
T ss_dssp HHHHHHH-STTHHHHHHHHHHS---HHHHHHHHHHHHHSTTSS-TTH-HHHHHHHHHHS-SSTTH---HHHHHHHHHHHH
T ss_pred HHHHHhcCCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHhcCChhh-hHHHHHHHHHhCCcccH---HHHHHHHHHHcc
Q ss_pred hChhhHHhhHHHHHHhcCCCCCcc-----------hHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhH
Q psy4020 127 KVPELMEIFLPATRLLLSDKNHAI-----------HQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTIL 195 (530)
Q Consensus 127 ~~p~~i~~~i~~l~~lL~d~n~~V-----------~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~ 195 (530)
...-.....+..-...+..+..+- -+..+++.|+.=.+..+...+...+.+..+-. +..-=+
T Consensus 308 ~~~~v~~~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lil~~lks~lr~~k~l~eawiK~I~~~~~-------~~~hkv 380 (1426)
T PF14631_consen 308 FEQCVLPSRIQASQRKLKNKGNASSSGNQENSSQDCEKLILDVLKSGLRFSKDLSEAWIKAIESLED-------ASDHKV 380 (1426)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHGGG-------STT--T
T ss_pred ccccccchhhcccccccccCcccccccccccccccHHHHHHHHHHHHHHhccHHHHHHHHHHhcCCC-------ccccch
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhh----hccCCcHHHH---
Q psy4020 196 YETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILE----CLKDPDVSIR--- 268 (530)
Q Consensus 196 ~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~----~l~d~d~~Ir--- 268 (530)
+.-+-.++-++.+..-++.+-+.+.+-+.+. .+.-..+......|+.+++.|...++. |+.++++.++
T Consensus 381 ~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~g-----~it~~ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG 455 (1426)
T PF14631_consen 381 IDLWLLLILYSINEDNRKSIEKILKKKIKSG-----HITEQLLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFG 455 (1426)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT------S-HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred HHHHHHHHHHcCCccchHHHHHHHHHHHHhC-----cccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q ss_pred HHHHHHHHhccChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 269 RRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 269 ~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
......+|..-+.-.-++|+..|+.++-+....-...+..-+..++.+++..-.-|-..+..+|..
T Consensus 456 ~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~fa~~l~giLD~ 521 (1426)
T PF14631_consen 456 SHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPFATFLKGILDY 521 (1426)
T ss_dssp HHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHTHHHHHGGGGG
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
No 236
>KOG2759|consensus
Probab=41.48 E-value=51 Score=34.90 Aligned_cols=65 Identities=25% Similarity=0.259 Sum_probs=53.4
Q ss_pred HHHHHHHhcc-CCCchhHHHHHHHHHHHhccChH---HHHHH--HHHHhhhccCCcHHHHHHHHHHHHhcc
Q psy4020 215 AVNILGRFLL-NNDKNIRYVALNTLLRTVYIDTS---AVQRH--RNTILECLKDPDVSIRRRALELSFALV 279 (530)
Q Consensus 215 ~v~~L~~lL~-s~d~niry~aL~~L~~l~~~~p~---~~~~~--~~~i~~~l~d~d~~Ir~~aL~ll~~l~ 279 (530)
....|..+|. ++||-+--+|+.-+.+.++.+|+ ++.++ ...++++++.+|+.||..||--+.++.
T Consensus 367 llkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 367 LLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 4567778886 67899999999999999999995 45544 457889999999999999998887764
No 237
>KOG3723|consensus
Probab=41.01 E-value=5.5e+02 Score=28.59 Aligned_cols=58 Identities=19% Similarity=0.092 Sum_probs=36.6
Q ss_pred HHHHhccCCCchhHHHHHHHH-HHHhccChHHHHHHHHHHhhhccCCc-HHHHHHHHHHHH
Q psy4020 218 ILGRFLLNNDKNIRYVALNTL-LRTVYIDTSAVQRHRNTILECLKDPD-VSIRRRALELSF 276 (530)
Q Consensus 218 ~L~~lL~s~d~niry~aL~~L-~~l~~~~p~~~~~~~~~i~~~l~d~d-~~Ir~~aL~ll~ 276 (530)
.+..+|.+.+|.- |.+|..+ ..|.+..++.++.+...+...+.|.+ .+|+...+..+.
T Consensus 203 ~l~~lL~q~~p~~-~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia 262 (851)
T KOG3723|consen 203 ELLALLSQLEPEQ-YHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIA 262 (851)
T ss_pred HHHHHhcCCCHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 4555666666644 4555555 44567889999999998877666654 355554444433
No 238
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=40.82 E-value=5e+02 Score=28.11 Aligned_cols=135 Identities=15% Similarity=0.225 Sum_probs=79.8
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcc-hhHHHHHHHHhccCCC------hHHHHHHHHHHHHhccCC
Q psy4020 154 KILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGN-TILYETVLSIMDIKSE------SGLRVLAVNILGRFLLNN 226 (530)
Q Consensus 154 ~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~-aV~~eai~~i~~l~~~------~~l~~~~v~~L~~lL~s~ 226 (530)
..+++|..+|+.|++...+....+..+..+.... .+. -++...++.+++.+.. +.+.......+.+.. .
T Consensus 9 EaV~iLd~lC~~d~s~v~r~~p~ik~l~~R~~~~--~~~~~~lL~i~qFfL~hge~~~~d~e~~~~~~F~~~l~~~f--~ 84 (459)
T PF14764_consen 9 EAVRILDVLCRQDPSLVYRVFPCIKRLFGRLASD--LSSARVLLPIAQFFLNHGEAAAVDSEPVLQHFFTSVLSRLF--H 84 (459)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHccChHhhcChHHHHHHHHHHhhHHhc--C
Confidence 3456666677888775444444444433322111 122 3777777777765432 211222222222222 3
Q ss_pred CchhHHHHH----HHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHH
Q psy4020 227 DKNIRYVAL----NTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLI 293 (530)
Q Consensus 227 d~niry~aL----~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~ 293 (530)
|+-+-+-.+ +++ ++...++.++.++...+|.++-=.++.....=++++-.|+++++..+++.-|+.
T Consensus 85 dp~lA~e~~~F~~~N~-~~L~~~~~~~~~~FP~llK~lAWn~~~l~~eFv~LLP~Li~~~Ta~EvlH~LLD 154 (459)
T PF14764_consen 85 DPFLAFETLQFCRDNL-KLLCSNTSIFPQYFPNLLKFLAWNSPSLVSEFVDLLPALISPGTAVEVLHSLLD 154 (459)
T ss_pred ChHHHHHHHHHHHHHH-HHHccccchHhHhchHHHHHHHcCcHHHHHHHHHHhHHHcCCCcHHHHHHHHHh
Confidence 443333222 222 344456788888889999988877788889999999999999999988765553
No 239
>KOG0889|consensus
Probab=40.23 E-value=1.2e+03 Score=32.17 Aligned_cols=242 Identities=17% Similarity=0.118 Sum_probs=129.2
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCC-----C---CcchHHHHHHHHHhhcC
Q psy4020 93 EMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDK-----N---HAIHQVKILKLLRILGK 164 (530)
Q Consensus 93 el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~-----n---~~V~qi~iL~lL~~l~~ 164 (530)
..+..+..++..-+.|+++.||+.+.-++..+.....--+.++....++++.-. . +.-.|+..++.+.....
T Consensus 1122 ~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~ 1201 (3550)
T KOG0889|consen 1122 KSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLS 1201 (3550)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHH
Confidence 345667777788888999999999999999998876444556666666666111 1 01156666666554332
Q ss_pred CChh---hHHHHHH---HHHHH----------hhcccCCCCCcch--hHHHHHHHHhc------cC--CChHHHHHHHHH
Q psy4020 165 NDVE---ASEAMND---ILAQV----------ATNTETSKNVGNT--ILYETVLSIMD------IK--SESGLRVLAVNI 218 (530)
Q Consensus 165 ~~~~---~~~~l~~---iL~~~----------l~~~~~~~n~~~a--V~~eai~~i~~------l~--~~~~l~~~~v~~ 218 (530)
..|+ ..+++.. .+..+ +..+...++.... ..-.|++++.. .. ....++...+..
T Consensus 1202 l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v 1281 (3550)
T KOG0889|consen 1202 LGPCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAV 1281 (3550)
T ss_pred cCCcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHH
Confidence 2221 1111111 11111 1111111221111 22334443321 11 112356666777
Q ss_pred HHHhccCCCchhHHHHHHHHHHHhccCh----HHHHHHHHHHhhhccCCcH-H-----HHHHHHHHHHhccChhhHHHHH
Q psy4020 219 LGRFLLNNDKNIRYVALNTLLRTVYIDT----SAVQRHRNTILECLKDPDV-S-----IRRRALELSFALVNSANVRSMM 288 (530)
Q Consensus 219 L~~lL~s~d~niry~aL~~L~~l~~~~p----~~~~~~~~~i~~~l~d~d~-~-----Ir~~aL~ll~~l~n~~Nv~~Iv 288 (530)
+-+-|.++.+++.-++...+......++ +.++.|...++.-+.|... + -=++-++++.+.-+.+=...++
T Consensus 1282 ~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~~~lsv~~l~~ls~l~~ll~~~f~~e~~rkll 1361 (3550)
T KOG0889|consen 1282 FFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSDHNNLSVPGLEGLSRLLRLLINYFKVEIGRKLL 1361 (3550)
T ss_pred HHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778889999888888887776544 4567777666665555421 1 1122344444444544444455
Q ss_pred HHHHHHhhhcC---------chhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 289 KELLIFLEKSE---------PDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 289 ~eL~~yl~~~d---------~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
+.+..++++.. ...+.+++.+|..+=...|+.+..+++-++-.+..
T Consensus 1362 ~hl~~~~~~~~~~y~~~~l~~~~~~~i~~~~i~~f~~lp~~~~~~~~~Ll~~v~~ 1416 (3550)
T KOG0889|consen 1362 QHLKKWLEDEVLDYLSGALKAGPEMKIIVVIINLFHLLPPAADKFLDELLLCVVL 1416 (3550)
T ss_pred HhhHHhhhHHHHHHHhhhhccCccchhhhHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 55555444321 22334455555555555677777777766654443
No 240
>KOG0891|consensus
Probab=39.43 E-value=7e+02 Score=32.95 Aligned_cols=93 Identities=22% Similarity=0.203 Sum_probs=56.5
Q ss_pred HHHhccCCCchhHHHHHHHHHHHhccChH--------H--HHHHHHHHhhh-ccCCcHHHHHHHHHHHH-----hccChh
Q psy4020 219 LGRFLLNNDKNIRYVALNTLLRTVYIDTS--------A--VQRHRNTILEC-LKDPDVSIRRRALELSF-----ALVNSA 282 (530)
Q Consensus 219 L~~lL~s~d~niry~aL~~L~~l~~~~p~--------~--~~~~~~~i~~~-l~d~d~~Ir~~aL~ll~-----~l~n~~ 282 (530)
+..++...+.++|-.+..+...+....+. + ++........| +.|.|+.++.+.+.-+. .+|.+.
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~laQ~~ 565 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQLAQPD 565 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhhhcCch
Confidence 33455667788888887777777654443 3 45555555554 45777778888877776 566666
Q ss_pred hHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHH
Q psy4020 283 NVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAE 315 (530)
Q Consensus 283 Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~ 315 (530)
++.... .-+.+..-+++..++..||.++.
T Consensus 566 ~lr~~~----~al~~~~l~~~~~~~~~ig~l~~ 594 (2341)
T KOG0891|consen 566 LLRLLF----IALHDENFAIQELATVIIGRLSS 594 (2341)
T ss_pred hHHHHH----HHhhhhhhhhHHhHHhhcccccc
Confidence 666422 22222234456666667776655
No 241
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=39.28 E-value=4.4e+02 Score=26.96 Aligned_cols=169 Identities=15% Similarity=0.211 Sum_probs=82.2
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhC-hhhH-H---hhHHHHHHhcCCCCCcchHHHHHHHHHhhc-CCCh---
Q psy4020 98 LASEVERLMKSS-NAYIRKKAALCAYRIILKV-PELM-E---IFLPATRLLLSDKNHAIHQVKILKLLRILG-KNDV--- 167 (530)
Q Consensus 98 l~~~V~~~l~~~-~~yVRK~A~la~~ki~~~~-p~~i-~---~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~-~~~~--- 167 (530)
+...+-+||+-. -.-|.+||.-.--.||+.- |+.+ + -|.+-+..++.-....| --.+++++..+. +-++
T Consensus 55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~V-kp~lL~i~e~~~lpL~~~L~ 133 (307)
T PF04118_consen 55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQV-KPQLLDIYEKYYLPLGPALR 133 (307)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhcCccHHHH
Confidence 456666777764 4568888888777777653 3322 1 24444444443333222 112233333322 2222
Q ss_pred -------------------hhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCc
Q psy4020 168 -------------------EASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDK 228 (530)
Q Consensus 168 -------------------~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~ 228 (530)
+..+...+++..+-.. .+....|+|....+- .+++.+..+...+.+.+.....
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~------v~~~~F~~~lwl~ii--~sp~~Rl~al~~l~~~l~~~~~ 205 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEA------VGDKYFWQCLWLCII--TSPSRRLGALNYLLRRLPKFQN 205 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHh------cChhHHHHHHHHHHh--cCcchhHHHHHHHHHhCCcccc
Confidence 2223333444443221 234455565543322 3344455555555554432111
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhc
Q psy4020 229 NIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFAL 278 (530)
Q Consensus 229 niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l 278 (530)
..-.........+...+|.++- ..+..|+.|+++-|+|.+||++..-
T Consensus 206 ~~~~~~~~~~~~~~~~~~~Llv---~al~~~L~D~~iLVqR~~LDlLl~~ 252 (307)
T PF04118_consen 206 DELSLSSEEQEYCLGPDPGLLV---RALCACLEDENILVQRGFLDLLLSH 252 (307)
T ss_pred cccccchHHHHHhcCCCccHHH---HHHHHHhCCchHHHHHHHHHHHHHh
Confidence 0000111111222334455443 4466789999999999999999863
No 242
>KOG0413|consensus
Probab=39.21 E-value=1.3e+02 Score=35.52 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=58.7
Q ss_pred HhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHh---hhcCchhhhhhHHHHHHHHHhh
Q psy4020 241 TVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFL---EKSEPDFKAHCSSNIVLCAERF 317 (530)
Q Consensus 241 l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl---~~~d~~~~~~~i~~I~~la~k~ 317 (530)
++.++...+..|...|--||.|+++-||+.++-+|.+|...+-++-==.-++.|+ -+..+++|+..=--|+.+-.+-
T Consensus 996 ~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 996 ICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred hHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhc
Confidence 3344555678899999999999999999999999999988664431111222333 3456777877766676665544
Q ss_pred CCC--chhHHHHHHHH
Q psy4020 318 APN--KRWHLDTLLKV 331 (530)
Q Consensus 318 ~~~--~~~~vd~Ll~l 331 (530)
.|. +..+|+.++.|
T Consensus 1076 ~P~~f~~~FVe~i~~l 1091 (1529)
T KOG0413|consen 1076 EPNFFPLNFVEYIIAL 1091 (1529)
T ss_pred CccchHHHHHHHHHHH
Confidence 332 12344444443
No 243
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=38.62 E-value=1.3e+02 Score=26.13 Aligned_cols=35 Identities=29% Similarity=0.304 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhhC-hhhHHhhHHHHHHhcCC
Q psy4020 111 AYIRKKAALCAYRIILKV-PELMEIFLPATRLLLSD 145 (530)
Q Consensus 111 ~yVRK~A~la~~ki~~~~-p~~i~~~i~~l~~lL~d 145 (530)
++||.+.+.++..++.++ |+.-++|++.+.+++..
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~ 37 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS 37 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc
Confidence 689999999999999864 77666677777777665
No 244
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=37.53 E-value=1.4e+02 Score=24.23 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcc-CCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhh----ccCCcHHHHHHHHHHHH
Q psy4020 212 RVLAVNILGRFLL-NNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILEC----LKDPDVSIRRRALELSF 276 (530)
Q Consensus 212 ~~~~v~~L~~lL~-s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~----l~d~d~~Ir~~aL~ll~ 276 (530)
.+....++...+. +.+..+|-..|+++..++..+.+-+..=...+|.. .++++..+...|.+++-
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3445566666653 56788999999999999987766554333444443 34667788888887653
No 245
>PF14961 BROMI: Broad-minded protein
Probab=37.22 E-value=3.7e+02 Score=32.61 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=51.1
Q ss_pred HHHHhhcCCCCh-hhhhHHHHHHhcCCC-----hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh
Q psy4020 65 NSLKNDLNSSTQ-FVVGLALCTLGAIAS-----PEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPE 130 (530)
Q Consensus 65 Nsl~kDL~s~n~-~vr~lALr~l~~i~~-----~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~ 130 (530)
|.+-.-+...+| .+|--|+..||++.- -|....+...+...|.|+++.++-+++--..|+|...|=
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl 235 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPL 235 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCch
Confidence 344444444454 789999999999774 445688999999999999999999988888888876653
No 246
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=36.63 E-value=3.4e+02 Score=27.92 Aligned_cols=62 Identities=21% Similarity=0.303 Sum_probs=43.7
Q ss_pred CCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccC-hhhHHHHHHHHHHHh
Q psy4020 225 NNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVN-SANVRSMMKELLIFL 295 (530)
Q Consensus 225 s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n-~~Nv~~Iv~eL~~yl 295 (530)
+++...+-.+......| +++|...+..+|+.....+..-+|.++..++. .+ ....+|+..++
T Consensus 37 s~~~~~~~~g~~l~~~i-------L~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~--g~~a~~v~~~f 99 (330)
T PF11707_consen 37 SSDLSFQSYGLELIRSI-------LQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDG--GALAREVLRSF 99 (330)
T ss_pred ccchhHHHHHHHHHHHH-------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCC--HHHHHHHHHhc
Confidence 34444555555554444 56677788889998888888999999999987 44 45566666665
No 247
>KOG1087|consensus
Probab=36.52 E-value=99 Score=33.56 Aligned_cols=64 Identities=23% Similarity=0.242 Sum_probs=46.2
Q ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHH------HHHHHHhhhcc-C-CcHHHHHHHHHHHHh
Q psy4020 214 LAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQ------RHRNTILECLK-D-PDVSIRRRALELSFA 277 (530)
Q Consensus 214 ~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~------~~~~~i~~~l~-d-~d~~Ir~~aL~ll~~ 277 (530)
-++..|.+-|.++.+.++|.||..|-.++....+.|. +++.+.+.+.+ . .|.-||.++|.+|..
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 4666777778888899999999977777776544442 34445555544 3 577899999999974
No 248
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=36.28 E-value=5.8e+02 Score=27.47 Aligned_cols=191 Identities=14% Similarity=0.137 Sum_probs=98.1
Q ss_pred hhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHH
Q psy4020 76 QFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKI 155 (530)
Q Consensus 76 ~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~i 155 (530)
+.+.-.-+..++.+..+++++++..-+-.++.+....++ + +.......|+....|++ +|...|..+ +.+.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~--~---f~~~~~~~~~~~~~fl~----lL~~~d~~i-~~~a 121 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVK--L---FHDDALLKKKTWEPFFN----LLNRQDQFI-VHMS 121 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHH--H---HHHHhhccccchHHHHH----HHcCCchhH-HHHH
Confidence 555556677888889999999999888888887422111 1 11111124666666665 344434433 4444
Q ss_pred HHHHHhhcCCCh-----hhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHH-----HHHHHHHHhccC
Q psy4020 156 LKLLRILGKNDV-----EASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRV-----LAVNILGRFLLN 225 (530)
Q Consensus 156 L~lL~~l~~~~~-----~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~-----~~v~~L~~lL~s 225 (530)
.+++..+....+ ...+.+.+.+...+++.. +....+-|+.++..+-..+..+. ..+..|..+|..
T Consensus 122 ~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~-----~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~ 196 (429)
T cd00256 122 FSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNIT-----NNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSN 196 (429)
T ss_pred HHHHHHHHhcCccccchhHHHHHHHHHHHHhhccC-----CcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhh
Confidence 555555432211 122234444544444321 23344444444433322222222 245567777753
Q ss_pred --CCchhHHHHHHHHHHHhccCh--HHHH--HHHHHHhhhccCCc-HHHHHHHHHHHHhccCh
Q psy4020 226 --NDKNIRYVALNTLLRTVYIDT--SAVQ--RHRNTILECLKDPD-VSIRRRALELSFALVNS 281 (530)
Q Consensus 226 --~d~niry~aL~~L~~l~~~~p--~~~~--~~~~~i~~~l~d~d-~~Ir~~aL~ll~~l~n~ 281 (530)
.+..+.|-++-++=.+.-..+ +... +....+...+++.. .-|-|-++.++.++.+.
T Consensus 197 ~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 197 ATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred ccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 255789998888877654322 1111 11223333444332 34666777777777774
No 249
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=35.99 E-value=1.5e+02 Score=22.92 Aligned_cols=50 Identities=12% Similarity=0.203 Sum_probs=37.0
Q ss_pred eCCCcEEEEEeecCCCC-CCeEEEEEEEeeCCcccccceEEEEeecCceEE
Q psy4020 427 DNHGVVINLLLDSQTPG-DSVTIVTMQATNENLTLVSDFLFQAAVPKTFQL 476 (530)
Q Consensus 427 ~~~~l~i~~~~~~~~~~-~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l 476 (530)
....+.+.-........ .+.+..++.++|.++.+..|+.++=.+|.+++.
T Consensus 22 ~~~~~~~~k~~~~~~~~~Gd~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 22 AIPDLSITKTVNPSTANPGDTVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred CCCCEEEEEecCCCcccCCCEEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 33445554444443222 468999999999999999999999999988765
No 250
>KOG1222|consensus
Probab=35.85 E-value=6.2e+02 Score=27.70 Aligned_cols=49 Identities=14% Similarity=0.290 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHH---HhhcccCCCCCcchhHHHHHHHHhccCC
Q psy4020 154 KILKLLRILGKNDVEASEAMNDILAQ---VATNTETSKNVGNTILYETVLSIMDIKS 207 (530)
Q Consensus 154 ~iL~lL~~l~~~~~~~~~~l~~iL~~---~l~~~~~~~n~~~aV~~eai~~i~~l~~ 207 (530)
.++++++.+..++......+++.+.. ++++- .+.+...||.-++.++.-
T Consensus 483 lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd-----~~E~F~~EClGtlanL~v 534 (791)
T KOG1222|consen 483 LLMKVVRNISQHEGATQNMFIDYVGDLAGIAKND-----NSESFGLECLGTLANLKV 534 (791)
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcC-----chHHHHHHHHHHHhhccc
Confidence 34566666666655455555555433 33332 256789999999887754
No 251
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=35.37 E-value=1.4e+02 Score=27.47 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=33.0
Q ss_pred cChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHH
Q psy4020 279 VNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLD 326 (530)
Q Consensus 279 ~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd 326 (530)
.+++|.+.+++++.+.....+.+....+++.|...|..-|.....|..
T Consensus 11 lt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~ 58 (209)
T PF02854_consen 11 LTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYAR 58 (209)
T ss_dssp CSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHH
Confidence 447888888888887776656777777777777777665544444443
No 252
>PF11622 DUF3251: Protein of unknown function (DUF3251); InterPro: IPR021658 This entry represents immunoglobulin-like domain found in a group of putative lipoprotein YajI. ; PDB: 2JWY_A.
Probab=33.95 E-value=1.9e+02 Score=26.71 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=34.9
Q ss_pred cEEEEEeecCCCCCCeEEEEEEEeeCCcccccceEEEEeecCceEEEeeCCCCCCCCCCCCceEEEEE
Q psy4020 431 VVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPPSDTNIPPGSQVTQTLRV 498 (530)
Q Consensus 431 l~i~~~~~~~~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l~l~p~Sg~~l~~~~~itQ~~~i 498 (530)
|++.+ ..-.+..+..+++..+.|.+..|+.+|.|++.== ++.|-+|..++. +.-+|.|..
T Consensus 64 L~~~l--~~I~~~AnGs~a~L~i~~~~~~pLpaf~~~veWG-----~ld~~t~k~l~~-~~qsq~~~~ 123 (165)
T PF11622_consen 64 LRLSL--SNIEPEANGSRATLRIQNLSSAPLPAFSATVEWG-----QLDPTTGKPLEV-DSQSQLINA 123 (165)
T ss_dssp EEEEE--EEEEE-SSSEEEEEEEEESSSS----EEEEEEEE-----EE-S-SSS--EE-EEEEEEEEE
T ss_pred EEEEE--ecccccCCccEEEEEEeCCCCCcccCceeEEEEc-----cccCCCCCcccc-chhceeEcc
Confidence 44444 3333335668999999999999999999988543 788888888775 122666666
No 253
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=33.82 E-value=1.8e+02 Score=28.15 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=23.8
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh
Q psy4020 83 LCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPE 130 (530)
Q Consensus 83 Lr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~ 130 (530)
...+...........+.+-+...+.|+.+||||.--=|+-.+.++.|+
T Consensus 140 v~~l~~~k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~~~e 187 (222)
T COG4912 140 VHQLVYKKKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKHSNE 187 (222)
T ss_pred HHHHHHhcCccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHhhchH
Confidence 333344333333334555555555565666665555555555554443
No 254
>KOG2199|consensus
Probab=33.39 E-value=4.6e+02 Score=27.80 Aligned_cols=86 Identities=22% Similarity=0.164 Sum_probs=59.3
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCC-------hhh-HHHHHHHHHHHhc-CCCHHHHH
Q psy4020 45 GYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIAS-------PEM-SRDLASEVERLMK-SSNAYIRK 115 (530)
Q Consensus 45 ~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~-------~el-~~~l~~~V~~~l~-~~~~yVRK 115 (530)
+-|.+.-...+++|..-=++-+|+|=|++.+|.|.-+||..+..+.. .|+ .+.....+..++. ..++-|++
T Consensus 28 ~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~ 107 (462)
T KOG2199|consen 28 LILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCE 107 (462)
T ss_pred HHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHH
Confidence 33444445566677777788999999999999999999987765431 222 3567788888888 55888888
Q ss_pred HHHHHHHH---HHhhChh
Q psy4020 116 KAALCAYR---IILKVPE 130 (530)
Q Consensus 116 ~A~la~~k---i~~~~p~ 130 (530)
+-...+-. .|+++|+
T Consensus 108 k~~~lv~eWsee~K~Dp~ 125 (462)
T KOG2199|consen 108 KMRDLVKEWSEEFKKDPS 125 (462)
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 75444432 3555664
No 255
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=33.12 E-value=1.1e+02 Score=22.35 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=30.0
Q ss_pred CCeEEEEEEEeeCCcccccceEEEEeecCceEEE
Q psy4020 444 DSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQ 477 (530)
Q Consensus 444 ~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l~ 477 (530)
.+.+..++.++|.++.+.+++.+.=.+|..++..
T Consensus 11 Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~v 44 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPATNVVVTDILPSGTTFV 44 (53)
T ss_pred CCEEEEEEEEEECCCCceEeEEEEEcCCCCCEEE
Confidence 4679999999999999999999999999876653
No 256
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=32.97 E-value=4.5e+02 Score=33.72 Aligned_cols=126 Identities=13% Similarity=0.171 Sum_probs=78.9
Q ss_pred cchhHHHHHHHHhccC----C-----ChHHHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhc
Q psy4020 191 GNTILYETVLSIMDIK----S-----ESGLRVLAVNILGRFLL-NNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECL 260 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~----~-----~~~l~~~~v~~L~~lL~-s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l 260 (530)
+..|.+.|+..+-++. . +....+...+++..++. +.+.++|-.+++++..|+..+..-++.=...||..+
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VL 1229 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVF 1229 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 4567788887654332 1 11233445566666554 677899999999999998765544443334444443
Q ss_pred ----cCCcHHHHHHHHHHHHhccCh----------hhHHHHHHHHHHHhhhc-CchhhhhhHHHHHHHHHh
Q psy4020 261 ----KDPDVSIRRRALELSFALVNS----------ANVRSMMKELLIFLEKS-EPDFKAHCSSNIVLCAER 316 (530)
Q Consensus 261 ----~d~d~~Ir~~aL~ll~~l~n~----------~Nv~~Iv~eL~~yl~~~-d~~~~~~~i~~I~~la~k 316 (530)
.++...+-+.|.+.+-.++++ .+..+.++-|.+|.... +.+..-.++.-+..|+.+
T Consensus 1230 s~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1230 TTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 366788999999988776544 57778888888888543 333333444444444433
No 257
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=32.69 E-value=5.6e+02 Score=26.22 Aligned_cols=236 Identities=12% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcc-----hHHHHHHHHHhhcCCChhhHHHHHHHHHHHhh--------cc
Q psy4020 118 ALCAYRIILKVPELMEIFLPATRLLLSDKNHAI-----HQVKILKLLRILGKNDVEASEAMNDILAQVAT--------NT 184 (530)
Q Consensus 118 ~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V-----~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~--------~~ 184 (530)
..-+..+|+.+.+.+.+.+.. ......+.+.+ ..-.||+++..+....++.......++..++. +.
T Consensus 6 ~~d~l~lY~~~s~~i~~~v~~-~G~~~~~~~~~~~lr~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~ 84 (319)
T PF08767_consen 6 YLDMLNLYRAYSQIISQAVAE-SGEIATKTPKVRLLRTIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSV 84 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-H-GGGGGSHHHHHHHHHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCchhhccHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCC
Q ss_pred cCCCCCcchhHHHHHHHHhccCCC-----hHHHHHHHHHHHHhccCCCchh-----------HHHHHHHHHHHhccChHH
Q psy4020 185 ETSKNVGNTILYETVLSIMDIKSE-----SGLRVLAVNILGRFLLNNDKNI-----------RYVALNTLLRTVYIDTSA 248 (530)
Q Consensus 185 ~~~~n~~~aV~~eai~~i~~l~~~-----~~l~~~~v~~L~~lL~s~d~ni-----------ry~aL~~L~~l~~~~p~~ 248 (530)
+..| .+-|+.=....+-.+... +............++..+..+. |.+.-.+...+..-.|+.
T Consensus 85 p~~r--~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~ 162 (319)
T PF08767_consen 85 PDAR--EPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQ 162 (319)
T ss_dssp GGGS---HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHH
T ss_pred cccc--ChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHH
Q ss_pred HHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHH----------------HHHHHHHHhhhcC----chhhhhhHH
Q psy4020 249 VQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRS----------------MMKELLIFLEKSE----PDFKAHCSS 308 (530)
Q Consensus 249 ~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~----------------Iv~eL~~yl~~~d----~~~~~~~i~ 308 (530)
++.....+...+++++..|...+|+++..+.+ |+.. ++.++..-+.+.+ -+....++.
T Consensus 163 f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~--~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~ 240 (319)
T PF08767_consen 163 FKLVIDSIVWGFKHTNREISETGLNILLELLN--NVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILS 240 (319)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH--HHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHH
Q ss_pred HHHHHHHh----------hCCCchhHHHHHHHHHHH--------hhhhhhcchhhhHHHHHHHHHHhh
Q psy4020 309 NIVLCAER----------FAPNKRWHLDTLLKVLVA--------NLLGFSNRALRDQRRALELSFALV 358 (530)
Q Consensus 309 ~I~~la~k----------~~~~~~~~vd~Ll~lL~~--------~~~~~v~~a~eiq~~a~e~~~ll~ 358 (530)
.+..+++. ..++....-+.+.++|.. .+..+|.+-.+...--.+|+..+|
T Consensus 241 ~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~~~qi~~fv~~Lf~~~~d~~~Fk~~lr 308 (319)
T PF08767_consen 241 NLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNLSPKQIENFVQGLFELNNDPEKFKTHLR 308 (319)
T ss_dssp HHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
No 258
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=32.59 E-value=75 Score=29.48 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=31.6
Q ss_pred hHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHH
Q psy4020 194 ILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRH 252 (530)
Q Consensus 194 V~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~ 252 (530)
-.|||+-++++...+.--.....+.+..=|.+ +..||.++...+.+++..+|..+.++
T Consensus 46 ~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~ 103 (169)
T PF08623_consen 46 AAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQR 103 (169)
T ss_dssp HHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 45666666665322110011123333333344 78888888888888888888776554
No 259
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=32.58 E-value=77 Score=29.43 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=25.9
Q ss_pred CchhHHHHHHHHHHHhccChH--HHHHHHHHHhhhccCCcHHHHHHHHHHHHhcc
Q psy4020 227 DKNIRYVALNTLLRTVYIDTS--AVQRHRNTILECLKDPDVSIRRRALELSFALV 279 (530)
Q Consensus 227 d~niry~aL~~L~~l~~~~p~--~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~ 279 (530)
.-++|=.|.+++..+....+. -+......+...|.| +.+||..+.-++.+++
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~ 93 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLA 93 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHH
Confidence 345666666666555443211 122333444555555 5566666666666654
No 260
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=31.95 E-value=7.1e+02 Score=27.24 Aligned_cols=191 Identities=16% Similarity=0.027 Sum_probs=97.0
Q ss_pred hhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--ChhhHHhhHHHHHHhcC----CCCCcc-
Q psy4020 78 VVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILK--VPELMEIFLPATRLLLS----DKNHAI- 150 (530)
Q Consensus 78 vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~--~p~~i~~~i~~l~~lL~----d~n~~V- 150 (530)
.+-..++++++-..++ +..+.+..-+-.|++.-|...|-..+-|+-.. ++ .++..+..+.. +.+.+.
T Consensus 220 ~K~~il~fL~sg~f~d--~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~----~~V~~L~~Ly~G~~~~~~~~~~ 293 (501)
T PF13001_consen 220 RKLAILKFLASGFFPD--EERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDP----DLVDRLFDLYLGKGIPPENGRP 293 (501)
T ss_pred HHHHHHHHHHhcCCCc--HhHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHhcCCchhcCCC
Confidence 4555677776655432 12333333344566666777766666544321 22 35555666554 222222
Q ss_pred -----hHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHH---hccC--CChHHHHHHHH---
Q psy4020 151 -----HQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSI---MDIK--SESGLRVLAVN--- 217 (530)
Q Consensus 151 -----~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i---~~l~--~~~~l~~~~v~--- 217 (530)
+|.+||.+|.+=... .........++..-+... +.+.-+--.++..+ .... ..+.......+
T Consensus 294 pa~~~lq~kIL~~L~kS~~A-a~~~~~~~~i~~~~l~~~----~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~ 368 (501)
T PF13001_consen 294 PASPRLQEKILSLLSKSVIA-ATSFPNILQIVFDGLYSD----NTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVIL 368 (501)
T ss_pred CCCHHHHHHHHHHHHHhHHH-HhCCccHHHHHhccccCC----ccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHH
Confidence 888888888652110 000112233333333321 11111211222222 1110 12222222222
Q ss_pred -HHHHhcc--------CCCchhHHHHHHHHHHHhccChHHHH---HHHHHHhhhccCCcHHHHHHHHHHHHhcc
Q psy4020 218 -ILGRFLL--------NNDKNIRYVALNTLLRTVYIDTSAVQ---RHRNTILECLKDPDVSIRRRALELSFALV 279 (530)
Q Consensus 218 -~L~~lL~--------s~d~niry~aL~~L~~l~~~~p~~~~---~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~ 279 (530)
.+-..+. +.+.+.|-.+-++|..|+.+.|..+. .+...+|..|.+++..+|--.-+-|..|+
T Consensus 369 ~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 369 SQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLA 442 (501)
T ss_pred hcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Confidence 2223341 34678999999999999999999883 24556677788888888766666655544
No 261
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=30.26 E-value=76 Score=19.75 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=13.0
Q ss_pred hhhhHHHHHHhcCCChhhHHHH
Q psy4020 77 FVVGLALCTLGAIASPEMSRDL 98 (530)
Q Consensus 77 ~vr~lALr~l~~i~~~el~~~l 98 (530)
.+|-.|..+|+++++++-.+.+
T Consensus 2 ~vR~~aa~aLg~~~~~~a~~~L 23 (30)
T smart00567 2 LVRHEAAFALGQLGDEEAVPAL 23 (30)
T ss_pred HHHHHHHHHHHHcCCHhHHHHH
Confidence 4566666666666666554433
No 262
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=30.20 E-value=1.9e+02 Score=24.73 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=38.3
Q ss_pred HHHHHHHhhcC-CCChhhhhHHHHHHhcCC-----ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC
Q psy4020 62 LITNSLKNDLN-SSTQFVVGLALCTLGAIA-----SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKV 128 (530)
Q Consensus 62 L~~Nsl~kDL~-s~n~~vr~lALr~l~~i~-----~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~ 128 (530)
-+..++.+-|. +..+..|.-|.--++.+. ++++++.+...|.+.....+. .+.|++|+..+++..
T Consensus 6 ~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 6 RLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 34455566665 556666666655555444 355666666666655554444 566777777777644
No 263
>KOG1517|consensus
Probab=29.14 E-value=2.1e+02 Score=34.06 Aligned_cols=99 Identities=14% Similarity=0.156 Sum_probs=70.9
Q ss_pred HHHhhcCC-CCchhHHHHHHHHhhccCChhHHH-----HHHHHHHhhcCCCChhhhhHHHHHHhcCCCh-----------
Q psy4020 30 CLKLIASS-RFTDKRIGYLGAMLLLDERQDVHL-----LITNSLKNDLNSSTQFVVGLALCTLGAIASP----------- 92 (530)
Q Consensus 30 vikl~~S~-~~~~Krl~YL~l~~~~~~~~e~~~-----L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~----------- 92 (530)
|+..+.++ ..-+|+...+.+..++.+.++.-. ++---+-.-|.++-|.||+.|+-+|+.+..-
T Consensus 604 Cle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~ 683 (1387)
T KOG1517|consen 604 CLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLV 683 (1387)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhh
Confidence 55666664 566899999999999977665322 3444455567889999999998877765431
Q ss_pred ----------hh-HHHHHH----HHHHHhcCCCHHHHHHHHHHHHHHHhhC
Q psy4020 93 ----------EM-SRDLAS----EVERLMKSSNAYIRKKAALCAYRIILKV 128 (530)
Q Consensus 93 ----------el-~~~l~~----~V~~~l~~~~~yVRK~A~la~~ki~~~~ 128 (530)
++ +|.... .+...++|.+|.||+.-+.++.+....+
T Consensus 684 ~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 684 VEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred hhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 01 344444 6667888999999999999998876544
No 264
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=28.80 E-value=2.2e+02 Score=28.27 Aligned_cols=67 Identities=19% Similarity=0.271 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcc-CCCchhHHHHHHHHHHHhccChH---HHHHH--HHHHhhhccC--CcHHHHHHHHHHHHhcc
Q psy4020 213 VLAVNILGRFLL-NNDKNIRYVALNTLLRTVYIDTS---AVQRH--RNTILECLKD--PDVSIRRRALELSFALV 279 (530)
Q Consensus 213 ~~~v~~L~~lL~-s~d~niry~aL~~L~~l~~~~p~---~~~~~--~~~i~~~l~d--~d~~Ir~~aL~ll~~l~ 279 (530)
....+.+..+|. +.++.++..+|++|..+.-.+|. .|+.+ ...+...+++ .+..+|.|.+|.|+-..
T Consensus 132 ~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 132 EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHHH
Confidence 456678888984 57899999999999998877774 34432 2345555554 35677877777776543
No 265
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=28.34 E-value=4.3e+02 Score=27.39 Aligned_cols=102 Identities=14% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHH--------HHHHHHHHhhhccCCcHHHHHHHHHHHHh-ccChh
Q psy4020 212 RVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSA--------VQRHRNTILECLKDPDVSIRRRALELSFA-LVNSA 282 (530)
Q Consensus 212 ~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~--------~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~-l~n~~ 282 (530)
.......+..+|.+++.-+|--+|+.|..+....... =..+..-++..|+|+...|+-.|..+.-- ++|+.
T Consensus 207 ~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 207 YDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Q ss_pred hHHHHH-------HHHHHHhhhc------Cchhhhh---hHHHHHHH
Q psy4020 283 NVRSMM-------KELLIFLEKS------EPDFKAH---CSSNIVLC 313 (530)
Q Consensus 283 Nv~~Iv-------~eL~~yl~~~------d~~~~~~---~i~~I~~l 313 (530)
.-..|. +.|++|+.+- |.+|..| +|+.|..+
T Consensus 287 K~~~I~~iL~~Nr~kLl~fl~~f~~~~~~D~qf~~EK~~li~~i~~L 333 (335)
T PF08569_consen 287 KPPPIVDILIKNREKLLRFLKDFHTDRTDDEQFEDEKAYLIKQIESL 333 (335)
T ss_dssp -BHHHHHHHHHTHHHHHHHHHTTTTT--S-CHHHHHHHHHHHHHHT-
T ss_pred CChHHHHHHHHHHHHHHHHHHhCCCCCCccccHHHHHHHHHHHHHhC
No 266
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=27.47 E-value=4.7e+02 Score=23.76 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=46.7
Q ss_pred HHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHhhHHHHHHh
Q psy4020 64 TNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVP-ELMEIFLPATRLL 142 (530)
Q Consensus 64 ~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p-~~i~~~i~~l~~l 142 (530)
++.+.+.++..|-.-..-.+..+..-.+++....+...+.+.......++.--|.+|. .+....| +....++..+.+-
T Consensus 4 v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~-~l~~~~~~~f~~~ll~~~~~~ 82 (209)
T PF02854_consen 4 VRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCA-ALNSRFPSEFRSLLLNRCQEE 82 (209)
T ss_dssp HHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHH-HHhccchhhHHHHHHHHHHHH
Confidence 4567777776554333333333333336778888888877766665566665555543 4667777 6555555555544
Q ss_pred c
Q psy4020 143 L 143 (530)
Q Consensus 143 L 143 (530)
+
T Consensus 83 f 83 (209)
T PF02854_consen 83 F 83 (209)
T ss_dssp H
T ss_pred H
Confidence 4
No 267
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=27.22 E-value=7.1e+02 Score=25.75 Aligned_cols=130 Identities=12% Similarity=-0.002 Sum_probs=67.8
Q ss_pred CCCCCCCchHHHHHhhcCCCCchhHHHHHHHHhhccCC---hhHHHHHHHHHHhhcCCCChhhhhHHHHHHhc------C
Q psy4020 19 PKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDER---QDVHLLITNSLKNDLNSSTQFVVGLALCTLGA------I 89 (530)
Q Consensus 19 lG~d~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~---~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~------i 89 (530)
+..+-..-|.++++.+-+++...++.++--+..-..-. |-+...+...+..-+.. |-..-...++.+.. +
T Consensus 172 LS~Elq~yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 172 LSKELQLYFEEITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred cCHHHHHHHHHHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCC
Confidence 33343444556777666666555555433322211100 22333444444444432 22111122232222 3
Q ss_pred CChhhHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHHHhhC----hhhHHhhHHHHHHhcCCCCCc
Q psy4020 90 ASPEMSRDLASEVERLMKS----------SNAYIRKKAALCAYRIILKV----PELMEIFLPATRLLLSDKNHA 149 (530)
Q Consensus 90 ~~~el~~~l~~~V~~~l~~----------~~~yVRK~A~la~~ki~~~~----p~~i~~~i~~l~~lL~d~n~~ 149 (530)
...-.+..+++.+..|+.. .+..+|.-|+-.+.++++++ |.+-.+....+...+.|.+..
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~ 324 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKP 324 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCC
Confidence 3344456788888888843 34589999999999998874 445555665666656555443
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=27.13 E-value=6.3e+02 Score=25.05 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=56.5
Q ss_pred chhHHHHHHHHHHHhc--cChHHHHHHHHHHhhhcc---CCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcCchh
Q psy4020 228 KNIRYVALNTLLRTVY--IDTSAVQRHRNTILECLK---DPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDF 302 (530)
Q Consensus 228 ~niry~aL~~L~~l~~--~~p~~~~~~~~~i~~~l~---d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~ 302 (530)
.++|+.+|+.|....- ..++-+.+... .+..+. .+.+.+...+++++.+..+.+-+.+++..+...+.-.+..|
T Consensus 80 ~elr~~iL~~La~~~l~~~~~~~~~ka~~-~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~ 158 (278)
T PF08631_consen 80 SELRLSILRLLANAYLEWDTYESVEKALN-ALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHH-HHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchH
Confidence 4788888888876543 23444443222 222222 33467888899999986666666666666555544333333
Q ss_pred hhhhHHHHHHHHHhhCCCchhHHH
Q psy4020 303 KAHCSSNIVLCAERFAPNKRWHLD 326 (530)
Q Consensus 303 ~~~~i~~I~~la~k~~~~~~~~vd 326 (530)
..++..|..++.+-++.+..++|
T Consensus 159 -~~~l~~i~~l~~~~~~~a~~~ld 181 (278)
T PF08631_consen 159 -DSILHHIKQLAEKSPELAAFCLD 181 (278)
T ss_pred -HHHHHHHHHHHhhCcHHHHHHHH
Confidence 34566677777766554444443
No 269
>KOG1991|consensus
Probab=26.43 E-value=1.2e+03 Score=27.91 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=66.5
Q ss_pred HHHHHHHhhccCCh---hHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC-----ChhhHHHHHHHHHHHhc-CCCHHHH
Q psy4020 44 IGYLGAMLLLDERQ---DVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA-----SPEMSRDLASEVERLMK-SSNAYIR 114 (530)
Q Consensus 44 l~YL~l~~~~~~~~---e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~-----~~el~~~l~~~V~~~l~-~~~~yVR 114 (530)
+|=|+ ..+.+..+ ++-.+++|.+.=+++|+--+.|+-|.-.++.++ ++.........+.+++. |++--||
T Consensus 442 vgsl~-~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~ 520 (1010)
T KOG1991|consen 442 VGSLA-SILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVR 520 (1010)
T ss_pred HHHHH-HHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchh
Confidence 34444 44444443 455578888888889999999999988887766 57778889999999999 8888899
Q ss_pred HHHHHHHHHHHhhChh
Q psy4020 115 KKAALCAYRIILKVPE 130 (530)
Q Consensus 115 K~A~la~~ki~~~~p~ 130 (530)
=.|++|+-.+....++
T Consensus 521 VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 521 VEAALALQSFISNQEQ 536 (1010)
T ss_pred hHHHHHHHHHHhcchh
Confidence 9999999888876553
No 270
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=25.90 E-value=2.8e+02 Score=23.00 Aligned_cols=43 Identities=7% Similarity=0.076 Sum_probs=33.6
Q ss_pred EEEEeecCCCCCCeEEEEEEEeeCCcccccceEEEEeecCceEEE
Q psy4020 433 INLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQ 477 (530)
Q Consensus 433 i~~~~~~~~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l~ 477 (530)
+++.+..+. ++-....+.++|.+..+|++-++.+..|...++.
T Consensus 3 v~~~v~~~W--~~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~ 45 (101)
T PF00553_consen 3 VTYTVTNSW--GGGFQGEVTVTNNGSSPINGWTVTFTFPSGQTIT 45 (101)
T ss_dssp EEEEEEEES--SSEEEEEEEEEESSSSTEESEEEEEEESTTEEEE
T ss_pred EEEEEeccc--CCCeEEEEEEEECCCCccCCEEEEEEeCCCCEEe
Confidence 456666666 4557788899999999999999999999777663
No 271
>KOG2973|consensus
Probab=25.74 E-value=4.1e+02 Score=27.33 Aligned_cols=84 Identities=20% Similarity=0.194 Sum_probs=55.8
Q ss_pred HHHHhhcCCCChhhhhHHHHHHhcCCCh------hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---hhhHHhh
Q psy4020 65 NSLKNDLNSSTQFVVGLALCTLGAIASP------EMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKV---PELMEIF 135 (530)
Q Consensus 65 Nsl~kDL~s~n~~vr~lALr~l~~i~~~------el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~---p~~i~~~ 135 (530)
+.+-+-+.+.||.+|..|.+.+..+... .--+...+.+.+++.+..+ -+-|+.++.+++++. .-++..|
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~ 83 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDL 83 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455667788899999998777766543 1125678889999999887 556778888887632 1233346
Q ss_pred HHHHHHhcCCCCCcc
Q psy4020 136 LPATRLLLSDKNHAI 150 (530)
Q Consensus 136 i~~l~~lL~d~n~~V 150 (530)
+..+..++.|..+.+
T Consensus 84 ~k~l~~~~~~p~~~l 98 (353)
T KOG2973|consen 84 LKVLMDMLTDPQSPL 98 (353)
T ss_pred HHHHHHHhcCcccch
Confidence 666666666654443
No 272
>KOG1943|consensus
Probab=25.66 E-value=1.2e+03 Score=28.00 Aligned_cols=237 Identities=17% Similarity=0.201 Sum_probs=116.4
Q ss_pred hhhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhChhhHH-hhHHHHHHhcCCCCC----cc--hHHHHHHHHHhhc
Q psy4020 92 PEMSRDLASEVERL-MKSSNAYIRKKAALCAYRIILKVPELME-IFLPATRLLLSDKNH----AI--HQVKILKLLRILG 163 (530)
Q Consensus 92 ~el~~~l~~~V~~~-l~~~~~yVRK~A~la~~ki~~~~p~~i~-~~i~~l~~lL~d~n~----~V--~qi~iL~lL~~l~ 163 (530)
+...+.+++++... +.|=++.+|--|+.|+.++....|+... ..++.+.+.....|. |+ ..-.++.-++.+.
T Consensus 538 ~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~ 617 (1133)
T KOG1943|consen 538 SGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE 617 (1133)
T ss_pred hhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh
Confidence 34455555555433 6677999999999999999999998775 445555554444443 33 1222333333333
Q ss_pred CCChhhHH-HHHH---HHHHHhhcccCCCCCcchhHHHHHHHHh-ccCCC-hHH-HHHHHHHHHHhccC--CCch-hHHH
Q psy4020 164 KNDVEASE-AMND---ILAQVATNTETSKNVGNTILYETVLSIM-DIKSE-SGL-RVLAVNILGRFLLN--NDKN-IRYV 233 (530)
Q Consensus 164 ~~~~~~~~-~l~~---iL~~~l~~~~~~~n~~~aV~~eai~~i~-~l~~~-~~l-~~~~v~~L~~lL~s--~d~n-iry~ 233 (530)
+..+...+ .+.. ++.++.... ..+..+ .+...|+.-.+ .++.+ ..+ ....+.....++.. +++| +|-.
T Consensus 618 ~~~~~l~e~~i~~l~~ii~~~~~~~-~~rg~~-~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n~i~~~ 695 (1133)
T KOG1943|consen 618 PVIKGLDENRIAGLLSIIPPICDRY-FYRGQG-TLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPNQIRDA 695 (1133)
T ss_pred hhhhhhHHHHhhhhhhhccHHHHHH-hccchH-HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 22222221 1111 222221111 011123 56666655433 33322 212 12233334444432 2344 7778
Q ss_pred HHHHHHHHhccC----hH----HHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHH--HHhh----hcC
Q psy4020 234 ALNTLLRTVYID----TS----AVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELL--IFLE----KSE 299 (530)
Q Consensus 234 aL~~L~~l~~~~----p~----~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~--~yl~----~~d 299 (530)
+...+..++..+ +. ++.+|.... -+..+..+|+-- -+.......+++..=.++.+ .++. +..
T Consensus 696 av~av~~l~s~y~~~d~~~~~~li~~~ls~~---~~~~~~~~r~g~-~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~ 771 (1133)
T KOG1943|consen 696 AVSAVSDLVSTYVKADEGEEAPLITRYLSRL---TKCSEERIRRGL-ILALGVLPSELIHRHLQEKLCKLVLELLPSDAW 771 (1133)
T ss_pred HHHHHHHHHHHHHhcCchhhhHHHHHHHHHh---cCchHHHHHHHH-HHHHccCcHHhhchHHHHHHHHHHhccCccccc
Confidence 888888777643 11 223333322 223344454432 22222122222221111111 1111 124
Q ss_pred chhhhhhHHHHHHHHHh-----hCCCchhHHHHHHHHHHH
Q psy4020 300 PDFKAHCSSNIVLCAER-----FAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 300 ~~~~~~~i~~I~~la~k-----~~~~~~~~vd~Ll~lL~~ 334 (530)
.+=|+..|.++...+.. ++...+.+.++|++.+++
T Consensus 772 a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~ldd 811 (1133)
T KOG1943|consen 772 AEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDD 811 (1133)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 55677788888777654 456888999999999987
No 273
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=25.49 E-value=6.7e+02 Score=24.82 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=31.3
Q ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHh
Q psy4020 100 SEVERLMKSS--NAYIRKKAALCAYRIILKVPELMEIFLPATRLL 142 (530)
Q Consensus 100 ~~V~~~l~~~--~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~l 142 (530)
..+++.+.++ +.|||-.|+-|+..+....|..-+..+..+.++
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~l 158 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFREL 158 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4566677776 799999999999999988876555444433333
No 274
>KOG0392|consensus
Probab=24.29 E-value=1.4e+03 Score=28.23 Aligned_cols=66 Identities=20% Similarity=0.176 Sum_probs=48.3
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHhccC-hHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccC
Q psy4020 215 AVNILGRFLLNNDKNIRYVALNTLLRTVYID-TSAVQRHRNTILECLKDPDVSIRRRALELSFALVN 280 (530)
Q Consensus 215 ~v~~L~~lL~s~d~niry~aL~~L~~l~~~~-p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n 280 (530)
-...+-.++.+..+++||.+.+++..+.... .+........++..+.+.|...|+...+.++.+..
T Consensus 817 ~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~ 883 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLD 883 (1549)
T ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHH
Confidence 3455666777899999999999998887653 34445566777778888888888887776665443
No 275
>PRK08951 malate synthase; Provisional
Probab=24.13 E-value=1.7e+02 Score=27.62 Aligned_cols=49 Identities=12% Similarity=0.185 Sum_probs=36.5
Q ss_pred CCceeEEEeCCCcEEEEEeecCCCCCCeEEEEEEEeeCCcccccceEEEEeecCceEEE
Q psy4020 419 DKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQ 477 (530)
Q Consensus 419 ~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l~ 477 (530)
..|.-.++-+||+.|++.+.|..+- .+..+.-|.|+.+..|+.--|...
T Consensus 95 ~~P~~ILLk~nGLHiEI~iD~~~~i----------G~~D~AgI~DI~lEsAlTtImDcE 143 (190)
T PRK08951 95 SEPSAILLKDSGSHVELTFDRHGGT----------GSRDLANIEDIQLETCTTFSQEPT 143 (190)
T ss_pred CCCCEEEEecCCcEEEEEECCCCCC----------CCcCcCCccceeEecchhhcccch
Confidence 3455556788999999999997632 335677899999999987555444
No 276
>KOG3723|consensus
Probab=23.91 E-value=6.2e+02 Score=28.20 Aligned_cols=81 Identities=21% Similarity=0.156 Sum_probs=47.3
Q ss_pred HHHHhcCC--ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHH
Q psy4020 83 LCTLGAIA--SPEMSRDLASEVERLMKSSNAYIRKKAALCAYR--IILKVPELMEIFLPATRLLLSDKNHAIHQVKILKL 158 (530)
Q Consensus 83 Lr~l~~i~--~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~k--i~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~l 158 (530)
||.++.+. -|+.+.+-.|.+..+|....|-=| +++-++. |-++.|+.++.++|.+.--+.|.++.-.-..|++.
T Consensus 183 LrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~--~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ 260 (851)
T KOG3723|consen 183 LRVLSAVYEKQPQPINPHLPELLALLSQLEPEQY--HLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKE 260 (851)
T ss_pred HHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHH--HHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 44444443 255555566666667776666432 3333322 23456788888888888777777765544555555
Q ss_pred HHhhcCC
Q psy4020 159 LRILGKN 165 (530)
Q Consensus 159 L~~l~~~ 165 (530)
+..+.+.
T Consensus 261 ia~~~pv 267 (851)
T KOG3723|consen 261 IAVYEPV 267 (851)
T ss_pred HHhcCcc
Confidence 5555544
No 277
>PF05536 Neurochondrin: Neurochondrin
Probab=23.64 E-value=7.6e+02 Score=27.40 Aligned_cols=98 Identities=16% Similarity=0.159 Sum_probs=54.9
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHhccChH-------HHHHHHHHHh-hhccC-------CcHHHHHHHHHHHHhccCh
Q psy4020 217 NILGRFLLNNDKNIRYVALNTLLRTVYIDTS-------AVQRHRNTIL-ECLKD-------PDVSIRRRALELSFALVNS 281 (530)
Q Consensus 217 ~~L~~lL~s~d~niry~aL~~L~~l~~~~p~-------~~~~~~~~i~-~~l~d-------~d~~Ir~~aL~ll~~l~n~ 281 (530)
+.-.++|.+.+-+=||+||-.+.+++...+. ++..-=.+|+ ++|.. +...-+..++.++...|.+
T Consensus 8 ~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~ 87 (543)
T PF05536_consen 8 EKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRD 87 (543)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 3444566666677788888888887765442 1111011222 23443 3467788888888888776
Q ss_pred hhH---HHH---HHHHHHHhhhcCc-hhhhhhHHHHHHHH
Q psy4020 282 ANV---RSM---MKELLIFLEKSEP-DFKAHCSSNIVLCA 314 (530)
Q Consensus 282 ~Nv---~~I---v~eL~~yl~~~d~-~~~~~~i~~I~~la 314 (530)
.++ .++ +.-|.+.+.+.+. +...++...+..++
T Consensus 88 ~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia 127 (543)
T PF05536_consen 88 PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA 127 (543)
T ss_pred hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 665 233 3445555555444 45555544444444
No 278
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=23.60 E-value=36 Score=28.99 Aligned_cols=37 Identities=27% Similarity=0.235 Sum_probs=21.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHH
Q psy4020 101 EVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATR 140 (530)
Q Consensus 101 ~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~ 140 (530)
.+..++.|++++||-.|+..+++ ..|+..+..++.+.
T Consensus 51 aLl~LL~hpn~~VRl~AA~~~L~---~~p~eA~~~Le~ia 87 (106)
T PF09450_consen 51 ALLPLLKHPNMQVRLWAAAHTLR---YAPEEARKVLEEIA 87 (106)
T ss_dssp GGGGGGGSS-HHHHHHHHHTTTT---T-HHHHHHHHHHHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHH---hCHHHHHHHHHHHH
Confidence 34557888888888777665554 45655554444433
No 279
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=22.78 E-value=1.2e+03 Score=26.98 Aligned_cols=256 Identities=13% Similarity=0.064 Sum_probs=133.3
Q ss_pred ChhhhhHHHHHHhcCCC--------hhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--ChhhHHhhHHHHHHhc
Q psy4020 75 TQFVVGLALCTLGAIAS--------PEMS-RDLASEVERLMKSSNAYIRKKAALCAYRIILK--VPELMEIFLPATRLLL 143 (530)
Q Consensus 75 n~~vr~lALr~l~~i~~--------~el~-~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~--~p~~i~~~i~~l~~lL 143 (530)
|+.-.--|||.+++|.+ ..+. .-++++|...+.++.-|.|..|+--+.++-.. +|.+.-...+....++
T Consensus 429 narq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl 508 (970)
T COG5656 429 NARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCL 508 (970)
T ss_pred cHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 45556678999998876 2222 33678888888999999999999888887443 3445556777777888
Q ss_pred CCCCCcchHHHHHHHHHhhcCCC---hhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhcc-----CC-ChHHHHH
Q psy4020 144 SDKNHAIHQVKILKLLRILGKND---VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDI-----KS-ESGLRVL 214 (530)
Q Consensus 144 ~d~n~~V~qi~iL~lL~~l~~~~---~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l-----~~-~~~l~~~ 214 (530)
.+.+-.| ++..--.++.+..++ +..++..-..++.+++- ++.-..-++-++...++.. ++ .+++...
T Consensus 509 ~nn~lpv-~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsL---Sn~feiD~LS~vMe~fVe~fseELspfa~eLa~~ 584 (970)
T COG5656 509 KNNHLPV-MIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSL---SNTFEIDPLSMVMESFVEYFSEELSPFAPELAGS 584 (970)
T ss_pred hcCCcch-hhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHh---cccccchHHHHHHHHHHHHhHHhhchhHHHHHHH
Confidence 8843344 333333333333332 22233223333333321 1111223444444444432 21 2333333
Q ss_pred HH----HHHHHhccCC--------CchhHHHH-HHHHHHHh---ccChHHHH----HHHHHHhhhccCCcHHHHHHHHHH
Q psy4020 215 AV----NILGRFLLNN--------DKNIRYVA-LNTLLRTV---YIDTSAVQ----RHRNTILECLKDPDVSIRRRALEL 274 (530)
Q Consensus 215 ~v----~~L~~lL~s~--------d~niry~a-L~~L~~l~---~~~p~~~~----~~~~~i~~~l~d~d~~Ir~~aL~l 274 (530)
.+ +..+.++.++ |..+.-.| |+++..++ ...|.+++ .....+-+.++++-.+.=+.|+|+
T Consensus 585 Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~di 664 (970)
T COG5656 585 LVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDI 664 (970)
T ss_pred HHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33 3444444322 23333332 34444433 23465543 233445556777767788899998
Q ss_pred HHhcc-ChhhHHHHHHHHHHHhhh----cC-chhhhhhHHHHHHHHH---hhCCCchhHHHHHHHHHHH
Q psy4020 275 SFALV-NSANVRSMMKELLIFLEK----SE-PDFKAHCSSNIVLCAE---RFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 275 l~~l~-n~~Nv~~Iv~eL~~yl~~----~d-~~~~~~~i~~I~~la~---k~~~~~~~~vd~Ll~lL~~ 334 (530)
+-+.+ -.+-+..|+--+.+-+.+ .+ .+|..+...++-.+.. +--++...|+.++++++..
T Consensus 665 ldg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~ 733 (970)
T COG5656 665 LDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKL 733 (970)
T ss_pred HhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHH
Confidence 86543 223344444333333333 23 2566666666655432 1113455667777766655
No 280
>KOG2038|consensus
Probab=22.73 E-value=1.2e+03 Score=27.00 Aligned_cols=55 Identities=22% Similarity=0.229 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcc
Q psy4020 96 RDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAI 150 (530)
Q Consensus 96 ~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V 150 (530)
...+..+..+..|+=+.||++|+-.++-+...-|+--..++-.+.+-|.|.+.-+
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKi 357 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKI 357 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhh
Confidence 3344444455556789999999999999999899987788888888888877665
No 281
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=22.35 E-value=4.2e+02 Score=29.93 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=17.8
Q ss_pred HHHHhhCCC-chhHHHHHHHHHHH
Q psy4020 312 LCAERFAPN-KRWHLDTLLKVLVA 334 (530)
Q Consensus 312 ~la~k~~~~-~~~~vd~Ll~lL~~ 334 (530)
++..+||.. -.|++.++++++..
T Consensus 153 ri~t~~ps~Fl~~~l~~i~~~~~~ 176 (633)
T PF08568_consen 153 RIQTKYPSRFLAMALSAILNFLKN 176 (633)
T ss_pred HhcccchhHHHHHHHHHHHHHHHh
Confidence 445678776 67999999998886
No 282
>PF05536 Neurochondrin: Neurochondrin
Probab=22.04 E-value=1.1e+03 Score=26.14 Aligned_cols=105 Identities=24% Similarity=0.270 Sum_probs=63.8
Q ss_pred hHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHH--------HHHHHHHhhcCC-------CChhhhhHHHHHHhcCCC
Q psy4020 27 QLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHL--------LITNSLKNDLNS-------STQFVVGLALCTLGAIAS 91 (530)
Q Consensus 27 ~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~--------L~~Nsl~kDL~s-------~n~~vr~lALr~l~~i~~ 91 (530)
.-+|++++.+.+-+.|-.|-+-++-+.+.++.... +-...+.+=|.+ +....+.+|+.-++..+.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 44677777777766666666666666654432110 112334444444 345788899888888764
Q ss_pred -hhhH-----HHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhhChhhH
Q psy4020 92 -PEMS-----RDLASEVERLMKSSNA-YIRKKAALCAYRIILKVPELM 132 (530)
Q Consensus 92 -~el~-----~~l~~~V~~~l~~~~~-yVRK~A~la~~ki~~~~p~~i 132 (530)
|+++ -.-+|.+.+++.+.+. -+-.-|+-|++-+. ..|+-.
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~ 133 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGA 133 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhH
Confidence 4443 3456777778877766 67777777777776 455533
No 283
>KOG0593|consensus
Probab=21.90 E-value=87 Score=32.07 Aligned_cols=73 Identities=16% Similarity=0.296 Sum_probs=49.8
Q ss_pred HHHhccC-CCchhHHHHHHHHHHHhc-cChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhh
Q psy4020 219 LGRFLLN-NDKNIRYVALNTLLRTVY-IDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLE 296 (530)
Q Consensus 219 L~~lL~s-~d~niry~aL~~L~~l~~-~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~ 296 (530)
+.+|+.+ .|+.++=+||+-+..+-+ +||+++. ...+| =|++++-+.+..|+ ..++.||..|-.
T Consensus 32 IKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVn--LiEVF---------rrkrklhLVFE~~d----hTvL~eLe~~p~ 96 (396)
T KOG0593|consen 32 IKKFVESEDDPVVKKIALREIRMLKQLKHENLVN--LIEVF---------RRKRKLHLVFEYCD----HTVLHELERYPN 96 (396)
T ss_pred EEeeccCCccHHHHHHHHHHHHHHHhcccchHHH--HHHHH---------HhcceeEEEeeecc----hHHHHHHHhccC
Confidence 5578865 569999999999988876 4676654 22233 24567777777777 456677777777
Q ss_pred hcCchhhhhh
Q psy4020 297 KSEPDFKAHC 306 (530)
Q Consensus 297 ~~d~~~~~~~ 306 (530)
..+.+..+..
T Consensus 97 G~~~~~vk~~ 106 (396)
T KOG0593|consen 97 GVPSELVKKY 106 (396)
T ss_pred CCCHHHHHHH
Confidence 7766654443
No 284
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=21.82 E-value=6.6e+02 Score=23.44 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=31.8
Q ss_pred ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q psy4020 91 SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIIL 126 (530)
Q Consensus 91 ~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~ 126 (530)
++++++.++..|.+....+=.-||-.|.-|+.++..
T Consensus 1 ~~~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~ 36 (193)
T PF12612_consen 1 SPELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLH 36 (193)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888889999988888888999999999999983
No 285
>PHA03159 hypothetical protein; Provisional
Probab=21.65 E-value=91 Score=27.32 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=38.8
Q ss_pred HhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHH
Q psy4020 86 LGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPA 138 (530)
Q Consensus 86 l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~ 138 (530)
|++|.-..+++.+...-..+=...+..|| |+..+.+-|.+..+++++|--.
T Consensus 1 mssi~fq~~ie~il~~cq~~~~~~dsivr--aihsvi~qynkfe~lmpdfs~c 51 (160)
T PHA03159 1 MSSIKFQKIIENILKECQDCHHQQDSIVR--AIHSVIHQYNKFEALMPDFSIC 51 (160)
T ss_pred CCcccHHHHHHHHHHHHHhcchhhhHHHH--HHHHHHHHHhhHHHhCCCchhh
Confidence 46677778888888888887666677776 7889999998887777766433
No 286
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=21.62 E-value=4.3e+02 Score=26.07 Aligned_cols=72 Identities=11% Similarity=0.167 Sum_probs=44.3
Q ss_pred eEEEEEEEeeCCcccccceEEEEeecC-ce--EEEeeCCCCC-----CCCCCCCceEEEEEEecCCCCCcceeEEEEEEE
Q psy4020 446 VTIVTMQATNENLTLVSDFLFQAAVPK-TF--QLQMLPPSDT-----NIPPGSQVTQTLRVAKANNNVQASLRMRIKVSY 517 (530)
Q Consensus 446 ~~~~~~~~~n~~~~~i~~~~fq~AVpK-~~--~l~l~p~Sg~-----~l~~~~~itQ~~~i~~~~~~~~~~~~lr~k~~y 517 (530)
+....+.+.|.+..+|+++.+.|.+-= +. ++.|.+.... .|.|++.+.-++.- +=..-..=-|.+-|+|
T Consensus 15 tF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~~~~~~~~~~L~p~~~l~~iv~~---~lkE~G~h~L~c~VsY 91 (249)
T PF06159_consen 15 TFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDNENSDSPVASLAPGESLDFIVSH---ELKELGNHTLVCTVSY 91 (249)
T ss_pred CEEEEEEeecCCCCceEEeEEEEEEeCCCCCccccCCCCccccccccccCCCCeEeEEEEE---EeeecCceEEEEEEEE
Confidence 467778899999999999998885422 22 4555554443 45665554443333 2122334456788888
Q ss_pred EEC
Q psy4020 518 NVN 520 (530)
Q Consensus 518 ~~~ 520 (530)
.-.
T Consensus 92 ~~~ 94 (249)
T PF06159_consen 92 TDP 94 (249)
T ss_pred ecC
Confidence 766
No 287
>PF11355 DUF3157: Protein of unknown function (DUF3157); InterPro: IPR021501 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.56 E-value=2.2e+02 Score=27.02 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=44.8
Q ss_pred eCCCcEEEEEeecCCCCCCeEEEEEEEeeCCcccccceEEEEeecCceEEEeeCCCCCCCCCCCCceEEEEEEe
Q psy4020 427 DNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPPSDTNIPPGSQVTQTLRVAK 500 (530)
Q Consensus 427 ~~~~l~i~~~~~~~~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l~l~p~Sg~~l~~~~~itQ~~~i~~ 500 (530)
.++|++|.|.-.+=. .+.+.+....+|.+++.+--+. ..+++.-.||.-|. +|.+.||.
T Consensus 96 s~sGVdV~l~~~~y~--~~~L~l~~~ltnqSsqsVv~Ve--------l~v~l~d~~G~~L~-----~e~v~vWq 154 (199)
T PF11355_consen 96 SKSGVDVSLGASQYE--DGQLGLPFSLTNQSSQSVVLVE--------LEVTLFDDSGQLLK-----TETVKVWQ 154 (199)
T ss_pred hcCCeeEEEecccee--CCeEEEEEEEecCCCceEEEEE--------EEEEEEcCCCCEee-----Eeeeehhh
Confidence 899999999877654 3479999999999998875554 45588889988876 55555543
No 288
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=21.49 E-value=5.8e+02 Score=29.41 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=60.7
Q ss_pred HHHHHHhccChHHHHH------HHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcCchhhhhhHHH
Q psy4020 236 NTLLRTVYIDTSAVQR------HRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSN 309 (530)
Q Consensus 236 ~~L~~l~~~~p~~~~~------~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~ 309 (530)
+.|.++...+|+.+.. ...-++.|+-+++..+..-|+++++...+++.-.+-+++|++.--+.--.=-...++.
T Consensus 503 ~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~ 582 (727)
T PF12726_consen 503 QILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLRQ 582 (727)
T ss_pred HHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444555555543321 2345677888999999999999999999988888888888765432111111122233
Q ss_pred HHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 310 IVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 310 I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
+..+.. |.|..+ .|.++.+++..
T Consensus 583 ~~~~~~-~~p~pr-~vr~~~DIi~~ 605 (727)
T PF12726_consen 583 LTKLKF-FEPCPR-MVRCLMDIIEV 605 (727)
T ss_pred HHhhhh-hcchHH-HHHHHHHHHHH
Confidence 333322 777655 78888887776
No 289
>KOG2032|consensus
Probab=21.35 E-value=1.1e+03 Score=25.84 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=69.4
Q ss_pred HHHHHHHhhc---CCCChhhhhHHHHHHhcCCCh------hhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCh--
Q psy4020 62 LITNSLKNDL---NSSTQFVVGLALCTLGAIASP------EMSRDLASEVERLMKSS-NAYIRKKAALCAYRIILKVP-- 129 (530)
Q Consensus 62 L~~Nsl~kDL---~s~n~~vr~lALr~l~~i~~~------el~~~l~~~V~~~l~~~-~~yVRK~A~la~~ki~~~~p-- 129 (530)
+..|.+.-+. .+|+.-+|++|+|.|++..+- .+...+...|...|-|. +.-|--.|+.|+.++..+.-
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 5566666554 678899999999999998753 23455667777777765 67788888888888766532
Q ss_pred hhHH---hhHHHHHHhcCCCCCcc--hHHHHHHHHHhhcCC
Q psy4020 130 ELME---IFLPATRLLLSDKNHAI--HQVKILKLLRILGKN 165 (530)
Q Consensus 130 ~~i~---~~i~~l~~lL~d~n~~V--~qi~iL~lL~~l~~~ 165 (530)
++.. +....+..+..+.++.+ .-..+...|.+|+-.
T Consensus 335 ~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~ 375 (533)
T KOG2032|consen 335 DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGG 375 (533)
T ss_pred chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCC
Confidence 2222 23346777777777665 444555666666543
No 290
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=21.29 E-value=1.1e+03 Score=25.68 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=48.3
Q ss_pred hhhHHHHH---HhcCCChhhHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHhhChhh--------HHhhHHHHHH
Q psy4020 78 VVGLALCT---LGAIASPEMSRDLASEVERLMKSS-----NAYIRKKAALCAYRIILKVPEL--------MEIFLPATRL 141 (530)
Q Consensus 78 vr~lALr~---l~~i~~~el~~~l~~~V~~~l~~~-----~~yVRK~A~la~~ki~~~~p~~--------i~~~i~~l~~ 141 (530)
..|.+|-. ++++.++++..++..-+..+++|. +..-|+.|++|+...|...... +..|++.++.
T Consensus 423 lig~vleGl~k~~~~~n~eflGD~Levl~eL~~d~~~dk~ss~a~r~alLcI~tAF~i~S~t~ygk~n~Dl~~fVd~lY~ 502 (657)
T COG5117 423 LIGYVLEGLVKYRKIINPEFLGDLLEVLYELLNDNPLDKISSDARRQALLCILTAFEIASATLYGKENYDLGGFVDLLYS 502 (657)
T ss_pred HHHHHHHHHHHHHhhcCHHHHhHHHHHHHHHHcCCchhhhhHHHHHHHHHHhhHHHHHhhhhhhhhccccHHHHHHHHHH
Confidence 34555444 566779999999999999999885 5566888999999877653221 2257888888
Q ss_pred hcC
Q psy4020 142 LLS 144 (530)
Q Consensus 142 lL~ 144 (530)
++-
T Consensus 503 ~v~ 505 (657)
T COG5117 503 MVH 505 (657)
T ss_pred HhC
Confidence 773
No 291
>KOG2153|consensus
Probab=21.21 E-value=1.2e+03 Score=26.36 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=34.5
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q psy4020 81 LALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILK 127 (530)
Q Consensus 81 lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~ 127 (530)
+|.-+.+-+.+|+==-.....|...+.+.+|-+||-|.+++..+|+.
T Consensus 194 IA~l~s~llenPE~N~~~L~~l~eml~s~n~~~~Kl~~lSLlaVFKD 240 (704)
T KOG2153|consen 194 IASLCSKLLENPEENLKKLKELFEMLDSQNPKAKKLALLSLLAVFKD 240 (704)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHh
Confidence 33333344556665556777888888899999999999999988873
No 292
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=20.60 E-value=2.2e+02 Score=23.70 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=23.9
Q ss_pred EEEEeecCCCCCCeEEEEEEEeeCCcccccceEEEE
Q psy4020 433 INLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQA 468 (530)
Q Consensus 433 i~~~~~~~~~~~~~~~~~~~~~n~~~~~i~~~~fq~ 468 (530)
+.+.+..+..-.+.+.+.+.|+|.++.++.++.+..
T Consensus 3 ~~i~~~~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l 38 (107)
T PF00927_consen 3 IKIKLPGDPVVGQDFTVSVSFTNPSSEPLRNVSLNL 38 (107)
T ss_dssp EEEEEESEEBTTSEEEEEEEEEE-SSS-EECEEEEE
T ss_pred EEEEECCCccCCCCEEEEEEEEeCCcCccccceeEE
Confidence 344444333334569999999999999999977766
No 293
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=20.46 E-value=3.4e+02 Score=22.68 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhh
Q psy4020 94 MSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPEL 131 (530)
Q Consensus 94 l~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~ 131 (530)
.++.+..++...++|-+|.||.-|..-+--+.+.+|+.
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 35677888889999999999999988888888889987
No 294
>KOG1822|consensus
Probab=20.42 E-value=1.9e+03 Score=28.36 Aligned_cols=124 Identities=17% Similarity=0.226 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccCh--HHHHHHHHHHhhhccCCcHHHHHHHHHHHHh--------ccC
Q psy4020 211 LRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDT--SAVQRHRNTILECLKDPDVSIRRRALELSFA--------LVN 280 (530)
Q Consensus 211 l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p--~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~--------l~n 280 (530)
++..+...+..-|.+.+|-.|.++-..+.++++..+ ..+..+...+|.-+.+.+.-|+|.-.-+... +++
T Consensus 873 v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 873 VRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 444455555566677889999999999999988654 4456777777777776655566655444442 455
Q ss_pred hhhHHHHHHHHHHHhhhc-CchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 281 SANVRSMMKELLIFLEKS-EPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 281 ~~Nv~~Iv~eL~~yl~~~-d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
.+-...=+.-|+...++. ++.+++-.+.++..++..-.|...-++...+.++..
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~ 1007 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLK 1007 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHH
Confidence 555555556777777776 458999999999999999888776677766665554
Done!