Query psy4020
Match_columns 530
No_of_seqs 336 out of 1516
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 23:22:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 100.0 1.7E-62 5.8E-67 544.3 31.6 372 2-379 38-492 (621)
2 1w63_A Adapter-related protein 100.0 3.9E-59 1.3E-63 517.8 32.7 368 2-375 37-469 (618)
3 2vgl_B AP-2 complex subunit be 100.0 2.2E-51 7.7E-56 453.4 25.4 363 2-378 16-440 (591)
4 3tjz_B Coatomer subunit gamma; 100.0 5.2E-51 1.8E-55 418.4 8.7 266 10-282 46-355 (355)
5 3zy7_A AP-1 complex subunit ga 100.0 6.4E-34 2.2E-38 247.8 14.6 110 418-530 2-113 (122)
6 1iu1_A Gamma1-adaptin; coated 100.0 9.7E-34 3.3E-38 254.0 15.0 125 403-530 4-137 (146)
7 3mnm_A ADP-ribosylation factor 100.0 1.8E-32 6E-37 238.7 15.4 110 419-530 7-118 (123)
8 1gyu_A Adapter-related protein 100.0 2.3E-32 7.9E-37 243.1 15.1 111 417-530 19-131 (140)
9 2e9g_A AP-1 complex subunit ga 100.0 3.9E-32 1.3E-36 239.7 12.8 109 419-530 12-122 (131)
10 1p4u_A ADP-ribosylation factor 100.0 7.2E-32 2.5E-36 243.2 14.6 122 406-530 10-141 (153)
11 2vgl_B AP-2 complex subunit be 99.4 2.4E-13 8.1E-18 149.6 11.0 363 28-413 16-401 (591)
12 1w63_A Adapter-related protein 99.4 1.5E-11 5.2E-16 135.9 24.9 338 30-378 112-596 (618)
13 1oyz_A Hypothetical protein YI 99.3 9.5E-11 3.3E-15 115.7 21.0 239 63-334 24-263 (280)
14 2vgl_A Adaptor protein complex 99.2 1.1E-11 3.7E-16 137.1 10.0 352 41-414 59-453 (621)
15 2jdq_A Importin alpha-1 subuni 99.2 5.1E-09 1.7E-13 109.6 26.2 284 27-317 22-349 (450)
16 4fdd_A Transportin-1; heat rep 99.2 1.1E-08 3.9E-13 116.7 31.1 306 26-332 129-488 (852)
17 1oyz_A Hypothetical protein YI 99.2 5.5E-09 1.9E-13 103.0 23.7 251 27-311 25-278 (280)
18 1wa5_B Importin alpha subunit; 99.1 8.8E-09 3E-13 111.2 26.7 288 25-319 87-416 (530)
19 2jdq_A Importin alpha-1 subuni 99.1 4.2E-08 1.4E-12 102.6 30.7 285 26-317 65-392 (450)
20 4b8j_A Importin subunit alpha- 99.1 3.1E-08 1E-12 106.7 26.9 284 26-316 75-401 (528)
21 1b3u_A Protein (protein phosph 99.1 1.1E-08 3.6E-13 110.8 22.7 300 32-333 133-486 (588)
22 3ul1_B Importin subunit alpha- 99.0 2.6E-07 8.8E-12 99.5 32.5 305 24-334 56-412 (510)
23 1wa5_B Importin alpha subunit; 99.0 7E-08 2.4E-12 104.0 27.2 285 26-317 131-459 (530)
24 4b8j_A Importin subunit alpha- 99.0 2.1E-07 7.2E-12 100.1 29.8 285 26-317 118-445 (528)
25 4hxt_A De novo protein OR329; 99.0 1.2E-07 4E-12 90.9 24.8 214 99-319 4-245 (252)
26 1b3u_A Protein (protein phosph 99.0 5.6E-08 1.9E-12 105.1 24.8 309 3-318 63-395 (588)
27 4fdd_A Transportin-1; heat rep 99.0 1.4E-07 4.8E-12 107.6 29.2 297 29-334 17-366 (852)
28 3tpo_A Importin subunit alpha- 98.9 5.2E-07 1.8E-11 97.5 29.7 304 25-334 76-431 (529)
29 4hxt_A De novo protein OR329; 98.9 2.5E-07 8.6E-12 88.5 23.6 210 64-280 4-241 (252)
30 3ltm_A Alpha-REP4; protein eng 98.9 2.6E-08 8.9E-13 93.8 15.7 88 64-162 21-108 (211)
31 3tjz_B Coatomer subunit gamma; 98.9 3.3E-08 1.1E-12 101.1 16.3 288 31-334 31-335 (355)
32 4db8_A Armadillo-repeat protei 98.9 1.4E-07 4.9E-12 90.8 19.3 209 99-314 14-250 (252)
33 2db0_A 253AA long hypothetical 98.8 1.6E-07 5.4E-12 85.4 17.2 214 96-315 31-246 (253)
34 2z6h_A Catenin beta-1, beta-ca 98.8 3.8E-06 1.3E-10 92.9 31.5 285 27-317 16-338 (644)
35 3ltj_A Alpharep-4; protein eng 98.8 1.4E-07 4.7E-12 88.1 16.5 89 63-162 15-103 (201)
36 2bpt_A Importin beta-1 subunit 98.8 1.8E-06 6.2E-11 97.7 28.6 303 30-334 374-730 (861)
37 2bpt_A Importin beta-1 subunit 98.8 1.8E-06 6.3E-11 97.7 28.0 296 28-333 7-375 (861)
38 4db8_A Armadillo-repeat protei 98.7 4.4E-07 1.5E-11 87.4 18.9 213 24-280 11-251 (252)
39 3ltm_A Alpha-REP4; protein eng 98.7 7.3E-07 2.5E-11 83.7 17.6 187 99-319 21-207 (211)
40 1ibr_B P95, importin beta-1 su 98.7 1.5E-06 5.3E-11 90.7 21.7 296 28-334 4-373 (462)
41 1jdh_A Beta-catenin; beta-cate 98.7 7.6E-06 2.6E-10 87.3 27.5 286 27-318 19-342 (529)
42 1qgr_A Protein (importin beta 98.7 1.3E-05 4.4E-10 90.9 30.4 295 36-333 339-697 (876)
43 3ltj_A Alpharep-4; protein eng 98.6 1.6E-06 5.6E-11 80.6 18.8 185 96-314 13-197 (201)
44 3now_A UNC-45 protein, SD10334 98.6 7.9E-06 2.7E-10 92.0 27.5 279 28-315 293-652 (810)
45 3b2a_A TON_1937, putative unch 98.6 4.1E-07 1.4E-11 86.0 14.2 193 96-296 32-234 (265)
46 2z6g_A B-catenin; FULL-length, 98.6 5E-07 1.7E-11 102.4 16.6 263 64-334 117-452 (780)
47 2z6g_A B-catenin; FULL-length, 98.6 7.5E-06 2.6E-10 92.7 25.9 103 215-317 361-474 (780)
48 1qgr_A Protein (importin beta 98.6 1.8E-05 6.3E-10 89.6 27.8 289 27-317 130-481 (876)
49 4db6_A Armadillo repeat protei 98.5 8E-06 2.7E-10 76.2 20.7 177 97-280 12-209 (210)
50 3ul1_B Importin subunit alpha- 98.5 3.6E-05 1.2E-09 82.6 27.0 281 28-315 103-430 (510)
51 1ibr_B P95, importin beta-1 su 98.5 4.7E-06 1.6E-10 87.0 19.3 258 69-333 135-457 (462)
52 3tpo_A Importin subunit alpha- 98.4 0.0001 3.4E-09 79.5 28.5 280 28-314 122-448 (529)
53 4db6_A Armadillo repeat protei 98.4 1.2E-05 4.1E-10 75.0 18.3 151 20-171 7-174 (210)
54 3now_A UNC-45 protein, SD10334 98.4 4.2E-05 1.4E-09 86.1 25.6 212 63-280 496-737 (810)
55 1u6g_C TIP120 protein, CAND1; 98.4 8E-06 2.7E-10 96.8 20.1 258 69-333 13-302 (1230)
56 1u6g_C TIP120 protein, CAND1; 98.4 1.1E-05 3.7E-10 95.7 20.1 264 24-295 5-305 (1230)
57 1jdh_A Beta-catenin; beta-cate 98.3 4.8E-05 1.6E-09 81.0 22.3 303 27-334 61-408 (529)
58 2z6h_A Catenin beta-1, beta-ca 98.1 0.00031 1.1E-08 77.4 23.3 304 27-334 58-405 (644)
59 3l6x_A Catenin delta-1; cateni 98.1 0.0044 1.5E-07 67.3 30.9 339 24-369 47-486 (584)
60 2qk2_A LP04448P; mini spindles 98.0 7.5E-05 2.6E-09 71.7 14.4 129 29-161 19-159 (242)
61 2qk2_A LP04448P; mini spindles 97.9 0.00011 3.6E-09 70.6 13.6 53 98-150 16-73 (242)
62 3nmz_A APC variant protein; pr 97.9 0.003 1E-07 66.7 25.8 237 78-320 164-455 (458)
63 1xm9_A Plakophilin 1; armadill 97.9 0.0046 1.6E-07 65.2 27.1 285 27-314 4-405 (457)
64 3nmw_A APC variant protein; AR 97.9 0.0013 4.6E-08 67.1 21.9 240 71-316 41-335 (354)
65 1xqr_A HSPBP1 protein; armadil 97.7 0.0018 6.1E-08 64.4 18.4 166 78-250 56-245 (296)
66 2qk1_A Protein STU2; STU2P, XM 97.7 0.00085 2.9E-08 65.0 15.2 199 32-274 23-244 (249)
67 1te4_A Conserved protein MTH18 97.6 5.3E-05 1.8E-09 65.6 5.2 106 28-150 15-120 (131)
68 3b2a_A TON_1937, putative unch 97.6 0.0018 6.2E-08 61.3 15.5 193 134-334 33-235 (265)
69 4ady_A RPN2, 26S proteasome re 97.5 0.005 1.7E-07 69.9 20.8 117 191-315 555-676 (963)
70 2qk1_A Protein STU2; STU2P, XM 97.5 0.0012 4.1E-08 63.9 13.1 100 31-130 66-179 (249)
71 3opb_A SWI5-dependent HO expre 97.4 0.0029 1E-07 70.3 17.5 212 63-280 458-728 (778)
72 1te4_A Conserved protein MTH18 97.4 0.00013 4.4E-09 63.2 5.4 116 64-203 14-129 (131)
73 4ady_A RPN2, 26S proteasome re 97.4 0.021 7.2E-07 64.8 24.5 232 39-297 451-699 (963)
74 1xqr_A HSPBP1 protein; armadil 97.4 0.0084 2.9E-07 59.5 18.8 138 27-165 83-239 (296)
75 2db0_A 253AA long hypothetical 97.4 0.039 1.3E-06 50.4 20.8 195 76-278 46-244 (253)
76 1wa5_C Importin alpha RE-expor 97.3 0.017 5.9E-07 66.5 23.4 91 36-126 416-525 (960)
77 1xm9_A Plakophilin 1; armadill 97.3 0.059 2E-06 56.6 24.4 118 26-144 45-195 (457)
78 3nmw_A APC variant protein; AR 97.2 0.025 8.6E-07 57.6 20.7 204 39-248 98-339 (354)
79 3opb_A SWI5-dependent HO expre 97.2 0.048 1.7E-06 60.6 23.9 160 194-358 517-728 (778)
80 3grl_A General vesicular trans 97.1 0.096 3.3E-06 56.9 24.5 191 32-227 29-267 (651)
81 3nmz_A APC variant protein; pr 97.0 0.051 1.7E-06 57.3 21.2 203 39-247 214-454 (458)
82 1wa5_C Importin alpha RE-expor 96.9 0.13 4.4E-06 59.2 24.7 213 36-249 372-635 (960)
83 3hs8_A Adaptor protein complex 96.8 0.0084 2.9E-07 58.7 12.0 96 423-525 49-148 (273)
84 3l6x_A Catenin delta-1; cateni 96.7 0.23 7.7E-06 53.9 23.0 252 63-315 49-384 (584)
85 4ffb_C Protein STU2; tubulin f 96.3 0.027 9.2E-07 54.9 11.9 171 102-278 14-210 (278)
86 1kyf_A Alpha-adaptin C; protei 96.3 0.052 1.8E-06 52.3 13.6 93 424-525 24-122 (247)
87 4hat_C Exportin-1; heat repeat 95.9 0.19 6.4E-06 58.3 18.1 147 58-209 447-623 (1023)
88 3u0r_A Apoptosis inhibitor 5; 95.8 0.37 1.3E-05 50.3 17.7 128 98-241 30-161 (507)
89 4ffb_C Protein STU2; tubulin f 95.5 0.053 1.8E-06 52.8 10.0 127 23-150 7-155 (278)
90 2x1g_F Cadmus; transport prote 95.4 4.4 0.00015 46.2 27.0 56 263-319 705-764 (971)
91 3grl_A General vesicular trans 95.2 1.4 4.9E-05 47.8 20.6 164 104-288 29-204 (651)
92 2x19_B Importin-13; nuclear tr 94.7 6.9 0.00024 44.4 26.0 276 29-315 28-369 (963)
93 2iw3_A Elongation factor 3A; a 94.6 2.9 9.8E-05 47.9 22.0 265 39-313 29-322 (986)
94 3ibv_A Exportin-T; karyopherin 94.6 5 0.00017 46.1 24.3 297 42-341 416-794 (980)
95 3ibv_A Exportin-T; karyopherin 94.2 5.6 0.00019 45.8 23.6 122 38-161 21-155 (980)
96 2x1g_F Cadmus; transport prote 94.1 0.6 2E-05 53.5 15.3 245 80-334 442-741 (971)
97 3tt9_A Plakophilin-2; cell adh 94.0 3.5 0.00012 39.0 18.0 71 99-170 10-87 (233)
98 3m1i_C Exportin-1; heat repeat 93.9 6.1 0.00021 45.6 23.5 145 59-208 448-622 (1049)
99 3tt9_A Plakophilin-2; cell adh 93.9 2.4 8.3E-05 40.1 16.6 152 22-173 5-189 (233)
100 3a6p_A Exportin-5; exportin-5, 93.5 9.9 0.00034 44.7 24.4 264 29-298 15-363 (1204)
101 3gjx_A Exportin-1; transport, 93.4 3.3 0.00011 48.1 19.8 146 59-208 474-648 (1073)
102 2x19_B Importin-13; nuclear tr 93.4 1.6 5.5E-05 49.7 17.2 240 81-331 429-730 (963)
103 2of3_A ZYG-9; multifunctional 93.2 0.6 2.1E-05 45.3 11.2 170 99-277 48-233 (266)
104 2of3_A ZYG-9; multifunctional 92.9 2.9 0.0001 40.4 15.6 33 217-249 210-242 (266)
105 3l9t_A Putative uncharacterize 92.9 0.28 9.7E-06 46.5 8.2 67 99-169 141-212 (240)
106 2g30_A AP-2 complex subunit be 92.7 0.44 1.5E-05 46.0 9.4 92 403-498 10-109 (258)
107 1lsh_A Lipovitellin (LV-1N, LV 92.6 4 0.00014 47.4 19.1 117 194-319 456-580 (1056)
108 3gs3_A Symplekin, LD45768P; he 92.4 2.6 8.9E-05 40.5 14.4 74 78-151 31-107 (257)
109 3m1i_C Exportin-1; heat repeat 92.4 19 0.00065 41.4 27.0 112 29-144 20-148 (1049)
110 3o2t_A Symplekin; heat repeat, 91.8 12 0.00042 38.0 22.1 89 58-150 25-116 (386)
111 3dad_A FH1/FH2 domain-containi 91.0 4.1 0.00014 40.6 14.4 65 100-165 121-190 (339)
112 4gmo_A Putative uncharacterize 88.5 2.4 8.3E-05 46.7 11.7 65 68-132 40-112 (684)
113 1lrv_A LRV, leucine-rich repea 87.9 0.17 5.9E-06 48.5 1.7 38 71-119 59-96 (244)
114 3dad_A FH1/FH2 domain-containi 87.2 7.8 0.00027 38.6 13.1 75 215-293 161-246 (339)
115 1t06_A Hypothetical protein; s 87.0 2.5 8.7E-05 40.0 9.4 115 29-143 52-197 (235)
116 4hat_C Exportin-1; heat repeat 86.9 39 0.0013 38.9 20.9 123 20-146 10-150 (1023)
117 1lsh_A Lipovitellin (LV-1N, LV 85.9 25 0.00086 40.7 18.7 211 56-283 354-579 (1056)
118 1lrv_A LRV, leucine-rich repea 85.9 0.13 4.3E-06 49.5 -0.5 167 64-311 76-242 (244)
119 3l9t_A Putative uncharacterize 84.0 29 0.00099 32.7 16.1 126 191-327 84-216 (240)
120 3oc3_A Helicase MOT1, MOT1; re 83.8 2.1 7.3E-05 45.6 7.5 157 69-239 270-432 (800)
121 3gs3_A Symplekin, LD45768P; he 82.8 13 0.00044 35.6 12.2 85 226-311 28-115 (257)
122 3o2t_A Symplekin; heat repeat, 82.5 7.2 0.00024 39.7 10.7 84 229-312 40-126 (386)
123 2b6c_A Hypothetical protein EF 80.9 2.6 8.7E-05 39.4 6.4 134 30-174 60-198 (220)
124 2iw3_A Elongation factor 3A; a 78.6 99 0.0034 35.4 24.5 259 63-333 96-397 (986)
125 3jxy_A Alkylpurine DNA glycosy 78.2 3.7 0.00013 38.7 6.5 71 100-174 134-205 (232)
126 3ldz_A STAM-1, signal transduc 76.7 9.2 0.00032 33.0 8.2 56 191-249 22-77 (140)
127 3g2s_A C-terminal fragment of 73.7 21 0.00072 31.1 9.7 85 191-278 28-124 (149)
128 3gjx_A Exportin-1; transport, 73.3 63 0.0022 37.4 16.3 203 29-244 32-276 (1073)
129 4gmo_A Putative uncharacterize 72.3 25 0.00085 38.5 12.3 80 28-107 37-129 (684)
130 1x5b_A Signal transducing adap 72.2 9.9 0.00034 33.7 7.4 56 191-249 32-87 (163)
131 1t06_A Hypothetical protein; s 70.6 32 0.0011 32.1 11.1 128 47-180 52-196 (235)
132 1mhq_A ADP-ribosylation factor 70.6 14 0.00047 32.2 7.8 85 191-278 18-114 (148)
133 1mhq_A ADP-ribosylation factor 70.2 49 0.0017 28.6 11.3 77 93-169 34-124 (148)
134 3g2s_A C-terminal fragment of 68.5 41 0.0014 29.2 10.4 77 94-170 45-135 (149)
135 1juq_A ADP-ribosylation factor 68.1 65 0.0022 28.6 13.4 86 191-279 30-127 (171)
136 3u0r_A Apoptosis inhibitor 5; 63.9 1.4E+02 0.0049 31.0 30.7 103 28-131 32-134 (507)
137 3ldz_A STAM-1, signal transduc 62.3 59 0.002 27.7 10.1 71 52-122 32-110 (140)
138 1x5b_A Signal transducing adap 62.1 51 0.0017 29.0 10.0 67 96-162 51-123 (163)
139 3jxy_A Alkylpurine DNA glycosy 62.0 63 0.0022 30.0 11.2 66 72-137 141-206 (232)
140 3zyq_A Hepatocyte growth facto 60.9 79 0.0027 29.3 11.6 75 46-123 29-115 (226)
141 1juq_A ADP-ribosylation factor 57.3 1E+02 0.0035 27.2 11.4 76 94-169 47-136 (171)
142 3zyq_A Hepatocyte growth facto 56.7 70 0.0024 29.7 10.4 99 191-321 25-124 (226)
143 3oc3_A Helicase MOT1, MOT1; re 55.4 36 0.0012 36.5 8.7 232 33-276 182-432 (800)
144 3qml_C Protein SLS1, nucleotid 55.1 48 0.0017 32.4 9.1 131 6-162 43-187 (315)
145 1elk_A Target of MYB1; superhe 47.6 1.4E+02 0.0048 25.9 11.2 86 191-279 33-129 (157)
146 1dvp_A HRS, hepatocyte growth 45.4 1.8E+02 0.0062 26.5 11.9 55 191-248 22-76 (220)
147 2b6c_A Hypothetical protein EF 45.3 63 0.0022 29.7 8.1 70 67-136 129-198 (220)
148 1dvp_A HRS, hepatocyte growth 45.1 1.4E+02 0.0049 27.2 10.5 68 47-118 27-107 (220)
149 1vsy_5 Proteasome activator BL 44.8 27 0.00092 40.1 6.3 110 33-143 768-892 (997)
150 3a6p_A Exportin-5; exportin-5, 43.7 77 0.0026 37.1 10.2 122 191-315 26-162 (1204)
151 1ho8_A Vacuolar ATP synthase s 42.3 29 0.001 36.2 5.6 65 215-279 396-475 (480)
152 1vsy_4 Proteasome activator BL 42.0 4E+02 0.014 29.6 20.0 213 92-307 334-579 (799)
153 2f31_A Diaphanous protein homo 40.6 69 0.0024 29.7 7.6 69 227-295 67-144 (233)
154 1vsy_5 Proteasome activator BL 38.8 1.8E+02 0.0061 33.3 11.9 123 209-332 796-944 (997)
155 3eg5_B Protein diaphanous homo 37.6 70 0.0024 32.3 7.6 71 226-296 132-211 (383)
156 1vdy_A Hypothetical protein (R 34.2 1.1E+02 0.0039 26.1 7.2 56 77-132 26-84 (140)
157 3fga_B Serine/threonine-protei 34.0 3.8E+02 0.013 27.1 21.6 196 97-297 129-343 (403)
158 3s4w_B Protein FACD2, fanconi 33.8 5.1E+02 0.018 30.5 14.7 157 129-296 113-272 (1323)
159 1vdy_A Hypothetical protein (R 32.3 1.6E+02 0.0054 25.2 7.8 71 213-283 48-133 (140)
160 2npp_B PP2A, B subunit, serine 30.3 4.6E+02 0.016 26.9 20.5 197 96-297 161-376 (449)
161 2xzz_A Protein-glutamine gamma 28.7 2.2E+02 0.0076 22.7 9.1 69 426-498 3-71 (102)
162 3rru_A TOM1L1 protein; structu 25.3 1.7E+02 0.0057 25.3 6.8 86 191-279 33-129 (152)
163 2bnx_A Diaphanous protein homo 24.4 1.6E+02 0.0055 29.5 7.6 69 227-295 71-148 (386)
164 3fga_B Serine/threonine-protei 24.0 3.1E+02 0.01 27.8 9.4 113 4-118 167-314 (403)
165 3ndz_E Endoglucanase D; cellot 22.3 2.3E+02 0.008 22.8 6.8 45 430-476 2-46 (107)
166 3ut4_A CTHE_2751, putative unc 22.2 3.6E+02 0.012 22.8 9.5 78 213-297 30-107 (134)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=1.7e-62 Score=544.25 Aligned_cols=372 Identities=27% Similarity=0.466 Sum_probs=334.0
Q ss_pred chhHHHHHH-----------HHHh--hhhcCCCCCCCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHH
Q psy4020 2 SSIRQVIND-----------AVER--DTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLK 68 (530)
Q Consensus 2 ~ei~~ei~~-----------~~~~--~i~mlG~d~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~ 68 (530)
+|||+++++ +++| |++|+|+|++|+|++|+++++|++++.||+||||++.++++++|+++|++|+|+
T Consensus 38 ~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~ 117 (621)
T 2vgl_A 38 ANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIK 117 (621)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 588888872 2333 778899999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHhhChhhHH--hhHHHHHHhcC
Q psy4020 69 NDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLM--KSSNAYIRKKAALCAYRIILKVPELME--IFLPATRLLLS 144 (530)
Q Consensus 69 kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l--~~~~~yVRK~A~la~~ki~~~~p~~i~--~~i~~l~~lL~ 144 (530)
|||+|+||++||+|||+||+|+++++++++.++|++++ .|++|||||+|++|++|+|+.+|+.++ .|.+.+.++|+
T Consensus 118 kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~ 197 (621)
T 2vgl_A 118 NDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN 197 (621)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhC
Confidence 99999999999999999999999999999999999999 999999999999999999999999998 89999999999
Q ss_pred CCCCcc-----------------------------------------------------hHHHHHHHHHhhcCC-ChhhH
Q psy4020 145 DKNHAI-----------------------------------------------------HQVKILKLLRILGKN-DVEAS 170 (530)
Q Consensus 145 d~n~~V-----------------------------------------------------~qi~iL~lL~~l~~~-~~~~~ 170 (530)
|+|++| +|++++++|+.|++. +|+..
T Consensus 198 d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~ 277 (621)
T 2vgl_A 198 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVR 277 (621)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHH
T ss_pred CCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHH
Confidence 887655 467788888888875 57888
Q ss_pred HHHHHHHHHHhhccc--------CCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHh
Q psy4020 171 EAMNDILAQVATNTE--------TSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTV 242 (530)
Q Consensus 171 ~~l~~iL~~~l~~~~--------~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~ 242 (530)
+.+.++|.+++++.. +++|+++||+|||+++++++..++++++.+++.|++||.++++|+||++|++|.+++
T Consensus 278 ~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~ 357 (621)
T 2vgl_A 278 GRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLA 357 (621)
T ss_dssp HHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 888898888875421 122446699999999999999888999999999999999999999999999999999
Q ss_pred ccCh--HHHHHHHHHHhhhcc-CCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCC
Q psy4020 243 YIDT--SAVQRHRNTILECLK-DPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAP 319 (530)
Q Consensus 243 ~~~p--~~~~~~~~~i~~~l~-d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~ 319 (530)
..+| ..+++|...|+.|++ |+|++||++||++++.++|++|++.|++||++|+.+.|.+||++++.+|+.||+||++
T Consensus 358 ~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~ 437 (621)
T 2vgl_A 358 SSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAV 437 (621)
T ss_dssp TCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCS
T ss_pred hccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 9886 789999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhhhhhhcchhhhHHHHHHHHHHhhcCcchHHHHHhhcc-CCCCCCC
Q psy4020 320 NKRWHLDTLLKVLVANLLGFSNRALRDQRRALELSFALVNSANVRSMMKELLI-FLEKSEP 379 (530)
Q Consensus 320 ~~~~~vd~Ll~lL~~~~~~~v~~a~eiq~~a~e~~~ll~~~p~~r~~ile~l~-~l~~~~~ 379 (530)
+++||+++|++++...-.++.+++ +..+..++.+.|++|+.+++++. ++++++.
T Consensus 438 ~~~~~v~~Ll~ll~~~~~~v~~ev------~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~ 492 (621)
T 2vgl_A 438 DYTWYVDTILNLIRIAGDYVSEEV------WYRVIQIVINRDDVQGYAAKTVFEALQAPAC 492 (621)
T ss_dssp STHHHHHHHHHHHHHHGGGSCSHH------HHHHHHHHGGGCSCHHHHHHHHHHHHTSSSC
T ss_pred cHHHHHHHHHHHHHhhcccchHHH------HHHHHHHHhCChhHHHHHHHHHHHHHcCccc
Confidence 999999999999998544443322 34567888889999999988877 6766653
No 2
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=3.9e-59 Score=517.85 Aligned_cols=368 Identities=67% Similarity=1.008 Sum_probs=337.0
Q ss_pred chhHHHHHH--------HHHh--hhhcCCCCCCCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhc
Q psy4020 2 SSIRQVIND--------AVER--DTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDL 71 (530)
Q Consensus 2 ~ei~~ei~~--------~~~~--~i~mlG~d~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL 71 (530)
.|||+++++ +++| |++|+|||++|++++|+++++|+++++||+||||++.++++++|+++|++|+|+|||
T Consensus 37 ~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL 116 (618)
T 1w63_A 37 AAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDL 116 (618)
T ss_dssp HHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 466666653 3444 778999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcc-
Q psy4020 72 NSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAI- 150 (530)
Q Consensus 72 ~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V- 150 (530)
+|+||++||+|||+||+|+++++++++.+.|.+++.|++|||||+|++|++++|+.+|+.++.|++.+.++|+|+|++|
T Consensus 117 ~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~ 196 (618)
T 1w63_A 117 NHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVL 196 (618)
T ss_dssp SCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHH
T ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888655
Q ss_pred -----------------------------------------------------hHHHHHHHHHhhcCCChhhHHHHHHHH
Q psy4020 151 -----------------------------------------------------HQVKILKLLRILGKNDVEASEAMNDIL 177 (530)
Q Consensus 151 -----------------------------------------------------~qi~iL~lL~~l~~~~~~~~~~l~~iL 177 (530)
+|+.++++|+.+++.+|+..+.+.++|
T Consensus 197 ~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L 276 (618)
T 1w63_A 197 HTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDIL 276 (618)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 367788888899998998888889999
Q ss_pred HHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHh
Q psy4020 178 AQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTIL 257 (530)
Q Consensus 178 ~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~ 257 (530)
.++++++++++|.+++|+|||+++++++..++.+...+++.|++||.++|+|+||++|++|..++..+|..+++|...++
T Consensus 277 ~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~ 356 (618)
T 1w63_A 277 AQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIV 356 (618)
T ss_dssp HHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHH
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 99988777778888999999999999998888888889999999999999999999999999999999999999999999
Q ss_pred hhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHHhhh
Q psy4020 258 ECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLL 337 (530)
Q Consensus 258 ~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~~~~ 337 (530)
.|++|+|.+||++|+++++.+++++|++.|++||++|+.+.|.+||++++.+|+.||++|+++..||+++++++|...-.
T Consensus 357 ~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~ 436 (618)
T 1w63_A 357 DCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGS 436 (618)
T ss_dssp HGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGG
T ss_pred HHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998543
Q ss_pred hhhcchhhhHHHHHHHHHHhhcCcchHHHHHhhcc-CCC
Q psy4020 338 GFSNRALRDQRRALELSFALVNSANVRSMMKELLI-FLE 375 (530)
Q Consensus 338 ~~v~~a~eiq~~a~e~~~ll~~~p~~r~~ile~l~-~l~ 375 (530)
++..++ +..++++++++|+.++.++..|. +++
T Consensus 437 ~v~~~~------~~~l~~ii~~~p~l~~~~v~~L~~~l~ 469 (618)
T 1w63_A 437 YVRDDA------VPNLIQLITNSVEMHAYTVQRLYKAIL 469 (618)
T ss_dssp GSCSSH------HHHHHHHHHHSCSTHHHHHHHHHHHHH
T ss_pred hhHHHH------HHHHHHHHhcChhHHHHHHHHHHHHHh
Confidence 333322 34577899999999998888776 555
No 3
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=2.2e-51 Score=453.38 Aligned_cols=363 Identities=18% Similarity=0.265 Sum_probs=309.9
Q ss_pred chhHHHHH--------HHHHh--hhhcCCCCCCCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhc
Q psy4020 2 SSIRQVIN--------DAVER--DTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDL 71 (530)
Q Consensus 2 ~ei~~ei~--------~~~~~--~i~mlG~d~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL 71 (530)
+|||++++ ++++| |++++|+|++|++++++++++|++++.||+||+|++.+++.++|.+++++|+++|||
T Consensus 16 ~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL 95 (591)
T 2vgl_B 16 FELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDC 95 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHc
Confidence 46666654 34555 667899999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH--hhHHHHHHhcCCCCCc
Q psy4020 72 NSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME--IFLPATRLLLSDKNHA 149 (530)
Q Consensus 72 ~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~--~~i~~l~~lL~d~n~~ 149 (530)
+|+||++||+||++||+++++++++.+.+.+.+++.|++|||||+|+.|++++++.+|+.++ .|++.+.++|.|.|++
T Consensus 96 ~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~ 175 (591)
T 2vgl_B 96 EDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPM 175 (591)
T ss_dssp SSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHH
T ss_pred CCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999987 5999999999998865
Q ss_pred c-----------------------------------------hHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCC
Q psy4020 150 I-----------------------------------------HQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSK 188 (530)
Q Consensus 150 V-----------------------------------------~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~ 188 (530)
| +|+++++++..|++.+++..+.+.+.+...++
T Consensus 176 V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~------ 249 (591)
T 2vgl_B 176 VVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLS------ 249 (591)
T ss_dssp HHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSC------
T ss_pred HHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHc------
Confidence 5 57788888888888777655555544433333
Q ss_pred CCcchhHHHHHHHHhccCC----ChHHHHH----HHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhc
Q psy4020 189 NVGNTILYETVLSIMDIKS----ESGLRVL----AVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECL 260 (530)
Q Consensus 189 n~~~aV~~eai~~i~~l~~----~~~l~~~----~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l 260 (530)
+.+++|++||+++++++.. +++..+. +...|.. |.++|+|+||++|++|..++..+|+.+++|...+ .|+
T Consensus 250 ~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~-L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~-~~~ 327 (591)
T 2vgl_B 250 HANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVT-LLSGEPEVQYVALRNINLIVQKRPEILKQEIKVF-FVK 327 (591)
T ss_dssp SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHH-HTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT-SCC
T ss_pred CCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH-HhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhh-eec
Confidence 3478999999999998752 3333333 3344444 4468999999999999999999999998887765 477
Q ss_pred cCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHHhhhhhh
Q psy4020 261 KDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFS 340 (530)
Q Consensus 261 ~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~~~~~~v 340 (530)
.++|.+||++|++++++++|++|++.|++||.+|+.+.|.+||++++.+|+.+|++|+++++||+++|++++.....++.
T Consensus 328 ~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~ 407 (591)
T 2vgl_B 328 YNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVV 407 (591)
T ss_dssp TTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred cCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHH
Confidence 67779999999999999999999999999999999999999999999999999999999999999999999997543433
Q ss_pred cchhhhHHHHHHHHHHhhcCcchHHHHHhhcc-CCCCCC
Q psy4020 341 NRALRDQRRALELSFALVNSANVRSMMKELLI-FLEKSE 378 (530)
Q Consensus 341 ~~a~eiq~~a~e~~~ll~~~p~~r~~ile~l~-~l~~~~ 378 (530)
.++ ...++++++++|+.++.++..|+ ++++++
T Consensus 408 ~e~------i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~ 440 (591)
T 2vgl_B 408 QEA------IVVIRDIFRKYPNKYESIIATLCENLDSLD 440 (591)
T ss_dssp HHH------HHHHHHHHHHSCSSCCTTHHHHHHTTTTCC
T ss_pred HHH------HHHHHHHHHHCcchHHHHHHHHHHHHHhcc
Confidence 332 34678899999999888887776 666554
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=5.2e-51 Score=418.36 Aligned_cols=266 Identities=16% Similarity=0.179 Sum_probs=181.5
Q ss_pred HHHHh--hhhcCCCC-----CCCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHH
Q psy4020 10 DAVER--DTYLPKYP-----AHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLA 82 (530)
Q Consensus 10 ~~~~~--~i~mlG~d-----~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lA 82 (530)
.+++| |+++.|.+ +++.|++++|+++|+|+++|||||||++.|++..+| ++|+||+|+||++|+||++||+|
T Consensus 46 ~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e-~iLv~Nsl~kDl~~~N~~iR~lA 124 (355)
T 3tjz_B 46 HILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED-VIIVTSSLTKDMTGKEDSYRGPA 124 (355)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC-GGGGHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhhcCCCcHhHHHHH
Confidence 34555 56678977 467788999999999999999999999999998655 56999999999999999999999
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcc------------
Q psy4020 83 LCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAI------------ 150 (530)
Q Consensus 83 Lr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V------------ 150 (530)
||+||+|++++|++++.+++++++.|++|||||+|++|++|+++.+||+++.|++.++++++|+||+|
T Consensus 125 LRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 125 VRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVR 204 (355)
T ss_dssp HHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred -----------------------hHHHHHHHHHhhcCCC-hhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccC
Q psy4020 151 -----------------------HQVKILKLLRILGKND-VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIK 206 (530)
Q Consensus 151 -----------------------~qi~iL~lL~~l~~~~-~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~ 206 (530)
+|+.++|+++.+++.| |+..+.+.+++.+++++ .++||+|||+++|+.+.
T Consensus 205 ~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~------~~~aVvyEa~k~I~~l~ 278 (355)
T 3tjz_B 205 KNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRN------KHEMVVYEAASAIVNLP 278 (355)
T ss_dssp TTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCC------SSHHHHHHHHHHHTC--
T ss_pred hhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcC------CChHHHHHHHHHHHhcc
Confidence 6888889888999988 77788899999888763 48999999999999997
Q ss_pred C-ChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChh
Q psy4020 207 S-ESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSA 282 (530)
Q Consensus 207 ~-~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~ 282 (530)
. ...+...+++.|+.||.++|+|+||+||++|.++++.+|+++++|..+|..|++|+|.+|+..|+..|.+.++|.
T Consensus 279 ~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllktg~e~ 355 (355)
T 3tjz_B 279 GCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSEG 355 (355)
T ss_dssp ---------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhhhccCCC
Confidence 6 455667788999999999999999999999999999999999999999999999999999999999999998863
No 5
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=100.00 E-value=6.4e-34 Score=247.79 Aligned_cols=110 Identities=43% Similarity=0.655 Sum_probs=101.8
Q ss_pred CCCceeEEEeCCCcEEEEEeecCCCCCCeEEEEEEEeeCCcccccceEEEEeecCceEEEeeCCCCCCCCC--CCCceEE
Q psy4020 418 KDKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPPSDTNIPP--GSQVTQT 495 (530)
Q Consensus 418 ~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l~l~p~Sg~~l~~--~~~itQ~ 495 (530)
+..|++++|+++||+|+|++.|+++++++++++++|+|+++.+|++|+|||||||+|+|+|+||||++|+| +++|||+
T Consensus 2 ~~~p~i~~~~~~~l~I~~~~~~~~~~~~~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~ 81 (122)
T 3zy7_A 2 SMIPSITAYDALGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQV 81 (122)
T ss_dssp -CCCCEEEEEETTEEEEEEEECC----CEEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEE
T ss_pred CCCCCEEEEeCCCEEEEEEEEcCCCCCCeEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEE
Confidence 45688999999999999999999877889999999999999999999999999999999999999999999 8999999
Q ss_pred EEEEecCCCCCcceeEEEEEEEEECCeeeeeeeeC
Q psy4020 496 LRVAKANNNVQASLRMRIKVSYNVNGTFIQDQAEI 530 (530)
Q Consensus 496 ~~i~~~~~~~~~~~~lr~k~~y~~~~~~~~e~~~v 530 (530)
|+| .|+.++++|||||++|++||++++|+|+|
T Consensus 82 l~i---~n~~~~~lklR~klsY~~~g~~~~E~~~v 113 (122)
T 3zy7_A 82 IKV---LNPQKQQLRMRIKLTFNWNGYKVQSEAEV 113 (122)
T ss_dssp EEE---ECTTCCCCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEE---ECCCCCCEEEEEEEEEEECCEEEEEEEEE
Confidence 999 89889999999999999999999999986
No 6
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=100.00 E-value=9.7e-34 Score=253.96 Aligned_cols=125 Identities=39% Similarity=0.607 Sum_probs=103.7
Q ss_pred cchhhhhhhhccCC-------CCCCceeEEEeCCCcEEEEEeecCCCCCCeEEEEEEEeeCCcccccceEEEEeecCceE
Q psy4020 403 HLDTLLKVLVAVSE-------NKDKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQ 475 (530)
Q Consensus 403 ~~~~l~dll~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~ 475 (530)
..-+++|||++.+. |++.|+++||+++||+|+|++.|+++++++++|+++|+|+++.+|++|+|||||||+||
T Consensus 4 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~v~~~~~l~I~f~~~r~~~~~~~~~i~~~f~N~s~~~it~f~fQaAVPK~~k 83 (146)
T 1iu1_A 4 QISQPHFLLDGLSSQPLFNDIAAGIPSITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQ 83 (146)
T ss_dssp -----------------------CCCCEEEEEETTEEEEEEEEECSSCTTEEEEEEEEEECSSSCBEEEEEEEECCTTSE
T ss_pred hhhhhHHhhcCCCCCCccCCCCCCCCCEEEEecCCEEEEEEEEcCCCCCCEEEEEEEEEeCCCCccccEEEEEEcCcccE
Confidence 34567788886543 34567899999999999999999877888899999999999999999999999999999
Q ss_pred EEeeCCCCCCCCC--CCCceEEEEEEecCCCCCcceeEEEEEEEEECCeeeeeeeeC
Q psy4020 476 LQMLPPSDTNIPP--GSQVTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQDQAEI 530 (530)
Q Consensus 476 l~l~p~Sg~~l~~--~~~itQ~~~i~~~~~~~~~~~~lr~k~~y~~~~~~~~e~~~v 530 (530)
|+|+||||++|+| +++|||+|+| .|+.++++|||||++|++||++++|+|+|
T Consensus 84 LqL~ppSg~~L~p~~~~~ItQ~~~I---~n~~~~~lklR~klsY~~~g~~~~E~~~v 137 (146)
T 1iu1_A 84 LQLLSPSSSIVPAFNTGTITQVIKV---LNPQKQQLRMRIKLTYNHKGSAMQDLAEV 137 (146)
T ss_dssp EEECCCSCSCBCGGGCCCEEEEEEE---ECTTCCCCCCEEEEEEEETTEEEEEEEEC
T ss_pred EEeeCCCCCccCCCCCCCEEEEEEE---eCCCCCCEEEEEEEEEEECCeEEEEEEEE
Confidence 9999999999999 6789999999 88888899999999999999999999986
No 7
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=238.65 Aligned_cols=110 Identities=23% Similarity=0.296 Sum_probs=97.2
Q ss_pred CCceeEEEeCCCcEEEEEeecCCCCCCeEEEEEEEeeCCcccccceEEEEeecCceEEEeeCCCCCCCCC--CCCceEEE
Q psy4020 419 DKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPPSDTNIPP--GSQVTQTL 496 (530)
Q Consensus 419 ~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l~l~p~Sg~~l~~--~~~itQ~~ 496 (530)
..+++++|+++||+|+|++.|++ ++.++++++|+|+++.+|++|+|||||||+|+|+|+||||++|+| +++|||+|
T Consensus 7 ~~~~v~~~~~~~l~I~~~~~~~~--~~~~~i~~~fsN~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~L~p~~~~~itQ~~ 84 (123)
T 3mnm_A 7 APARTLVNQSPNLKIEFEISRES--NSVIRIXSFFTNLSSSPISNLVFLLAVPKSMSLXLQPQSSNFMIGNAKDGISQEG 84 (123)
T ss_dssp --CEEEEEECSSEEEEEEEEECS--SSCEEEEEEEEECSSSCEEEEEEEEECCTTSEEEECCCSCSCBCTTCTTCEEEEE
T ss_pred CcceEEEEeCCCEEEEEEEEeCC--CCeEEEEEEEecCCCCccccEEEEEecCcccEEEeECCCcCccCCCCCCCEEEEE
Confidence 45689999999999999999987 457999999999999999999999999999999999999999999 48999999
Q ss_pred EEEecCCCCCcceeEEEEEEEEECCeeeeeeeeC
Q psy4020 497 RVAKANNNVQASLRMRIKVSYNVNGTFIQDQAEI 530 (530)
Q Consensus 497 ~i~~~~~~~~~~~~lr~k~~y~~~~~~~~e~~~v 530 (530)
+|+|..++.++++|||||++|++||++++|+|++
T Consensus 85 ~I~n~~~~~~~~lklR~klsY~~~g~~~~E~g~~ 118 (123)
T 3mnm_A 85 TIENAPANPSKALXVKWKVNYSVNSTQAEETAVF 118 (123)
T ss_dssp EEESCCCC---CCEEEEEEEEEETTEEEEEEEEE
T ss_pred EEecCCCCCCCCEEEEEEEEEEECCeEEEEEEEE
Confidence 9943334447899999999999999999999985
No 8
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=99.98 E-value=2.3e-32 Score=243.07 Aligned_cols=111 Identities=42% Similarity=0.668 Sum_probs=103.7
Q ss_pred CCCCceeEEEeCCCcEEEEEeecCCCCCCeEEEEEEEeeCCcccccceEEEEeecCceEEEeeCCCCCCCCC--CCCceE
Q psy4020 417 NKDKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPPSDTNIPP--GSQVTQ 494 (530)
Q Consensus 417 ~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l~l~p~Sg~~l~~--~~~itQ 494 (530)
|++.|+++||+++||+|+|++.|++++++++.|+++|+|+++.+|++|+|||||||+|+|+|+||||++|+| +++|||
T Consensus 19 ~~~~~~i~v~~~n~L~I~f~~~r~~~~~~~~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ 98 (140)
T 1gyu_A 19 SHMIPSITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQ 98 (140)
T ss_dssp --CCCCEEEEEETTEEEEEEEEECSSCTTEEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGCCCEEE
T ss_pred CCCCCCEEEEecCCEEEEEEEEcCCCCCCEEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEE
Confidence 345678999999999999999998878889999999999999999999999999999999999999999999 678999
Q ss_pred EEEEEecCCCCCcceeEEEEEEEEECCeeeeeeeeC
Q psy4020 495 TLRVAKANNNVQASLRMRIKVSYNVNGTFIQDQAEI 530 (530)
Q Consensus 495 ~~~i~~~~~~~~~~~~lr~k~~y~~~~~~~~e~~~v 530 (530)
+|+| .|+.++++|||||++|++||++++|+|+|
T Consensus 99 ~m~I---~n~~~~~l~LR~klsY~~~g~~~~E~~~v 131 (140)
T 1gyu_A 99 VIKV---LNPQKQQLRMRIKLTYNHKGSAMQDLAEV 131 (140)
T ss_dssp EEEE---ECTTCCCCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEE---eCCCCCCEEEEEEEEEEECCeEEEEEEEE
Confidence 9999 88888899999999999999999999986
No 9
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=3.9e-32 Score=239.70 Aligned_cols=109 Identities=31% Similarity=0.502 Sum_probs=103.0
Q ss_pred CCceeEEEeCCCcEEEEEeecCCCCCCeEEEEEEEeeCCcccccceEEEEeecCceEEEeeCCCCCCCCC--CCCceEEE
Q psy4020 419 DKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPPSDTNIPP--GSQVTQTL 496 (530)
Q Consensus 419 ~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l~l~p~Sg~~l~~--~~~itQ~~ 496 (530)
+.++++||+++||+|+|++.|++++++.++|+++|+|++..+|++|+|||||||+|||+|+||||++|+| +++|||+|
T Consensus 12 ~~~~i~v~~~~~l~I~f~~~~~~~~~~~~~i~~~~~N~s~~~it~f~fQaAVPK~~kLqL~p~Sg~~l~p~~~~~ItQ~~ 91 (131)
T 2e9g_A 12 PIPDLKVFEREGVQLNLSFIRPPENPALLLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGGLPITQLF 91 (131)
T ss_dssp CCCCEEEEECSSEEEEEEEECCSSCTTEEEEEEEEEECSSSCEEEEEEEEECCTTSCCEECCCSCSEECTTTCCCBCCCE
T ss_pred CCCCEEEEecCCEEEEEEEEcCCCCCCeEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCCcCCCCCCCEEEEE
Confidence 3468999999999999999998777888999999999999999999999999999999999999999999 67799999
Q ss_pred EEEecCCCCCcceeEEEEEEEEECCeeeeeeeeC
Q psy4020 497 RVAKANNNVQASLRMRIKVSYNVNGTFIQDQAEI 530 (530)
Q Consensus 497 ~i~~~~~~~~~~~~lr~k~~y~~~~~~~~e~~~v 530 (530)
+| .|+.++++|||||++|++||++++|+|+|
T Consensus 92 ~i---~n~~~~~l~lR~klsY~~~g~~~~e~~~v 122 (131)
T 2e9g_A 92 RI---LNPNKAPLRLKLRLTYDHFHQSVQEIFEV 122 (131)
T ss_dssp EE---ECTTCCCCCEEEEEEEECSSSEEEEEEEE
T ss_pred EE---eCCCCCCEEEEEEEEEEECCeEEEEEEEE
Confidence 99 88888899999999999999999999985
No 10
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=99.97 E-value=7.2e-32 Score=243.23 Aligned_cols=122 Identities=24% Similarity=0.451 Sum_probs=110.6
Q ss_pred hhhhhhhccCC--CCCCceeEEEeCCCcEEEEEeecC--CCCCCeEEEEEEEeeCCcccccceEEEEeecCceEEEeeCC
Q psy4020 406 TLLKVLVAVSE--NKDKVSVKAYDNHGVVINLLLDSQ--TPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPP 481 (530)
Q Consensus 406 ~l~dll~~~~~--~~~~~~~~~~~~~~l~i~~~~~~~--~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l~l~p~ 481 (530)
+|-|++.++++ |++.|++++|+++||+|.|++.|+ ++++++..++++|+|+++.+|++|+|||||||+|||+|+||
T Consensus 10 ~l~~~~~~l~~~~p~~~~~v~v~~~n~l~I~f~~~~~~~p~~~~~~~i~~~~~N~s~~~is~f~fQaAVPK~~kLqL~pp 89 (153)
T 1p4u_A 10 SLASIHVPLESIKPSSALPVTAYDKNGFRILFHFAKECPPGRPDVLVVVVSMLNMAPLPVKSIVLQAAAPKSMKVKLQPP 89 (153)
T ss_dssp CCTTCCCCGGGCCBCSSCCEEEEEETTEEEEEEEBSSCCTTCTTEEEEEEEEEECSSSCBEEEEEEEECBTTSEEEECCC
T ss_pred CHhhceeeccccCCCCCCCEEEEecCCEEEEEEEEecCCCCCCCeEEEEEEEEeCCCCccccEEEEEEcCcccEEEeeCC
Confidence 46666666665 566789999999999999999997 44678889999999999999999999999999999999999
Q ss_pred CCCCCCC-C-----CCceEEEEEEecCCCCCcceeEEEEEEEEECCeeeeeeeeC
Q psy4020 482 SDTNIPP-G-----SQVTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQDQAEI 530 (530)
Q Consensus 482 Sg~~l~~-~-----~~itQ~~~i~~~~~~~~~~~~lr~k~~y~~~~~~~~e~~~v 530 (530)
||++|+| + ++|||+|+| .|+.++++|||||++|++||++++|+|+|
T Consensus 90 Sg~~L~p~~~~~~~~~ItQ~m~v---~n~~~~~l~LR~klsY~~~g~~~~E~~~v 141 (153)
T 1p4u_A 90 SGTELSPFSPIQPPAAITQVMLL---ANPLKEKVRLRYKLTFALGEQLSTEVGEV 141 (153)
T ss_dssp SCSCBCCCBTTBCCCEEEEEEEE---ECTTCCCCCEEEEEEEEETTEEEEEEEEE
T ss_pred CCCccCCCCcCCCCCCEEEEEEE---eCCCCCCEEEEEEEEEEECCeEEEEEEEE
Confidence 9999999 2 479999999 88889999999999999999999999986
No 11
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.43 E-value=2.4e-13 Score=149.58 Aligned_cols=363 Identities=16% Similarity=0.171 Sum_probs=246.9
Q ss_pred HHHHHhhcCCCCc-----hhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC--ChhhHHHHHH
Q psy4020 28 LECLKLIASSRFT-----DKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA--SPEMSRDLAS 100 (530)
Q Consensus 28 ~~vikl~~S~~~~-----~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~--~~el~~~l~~ 100 (530)
.++-+.+.|++.. .||+.|+...- .+-+....-++ +=++++|+.+|-++--.++.+. .+|++.-+.+
T Consensus 16 ~~i~~~L~~~~~~~k~~~~~kli~~~~~G--~d~~~~~~~vi----~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n 89 (591)
T 2vgl_B 16 FELKAELNNEKKEKRKEAVKKVIAAMTVG--KDVSSLFPDVV----NCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVN 89 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHTT--CCCGGGHHHHH----HTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHCC--CChHHHHHHHH----HHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHH
Confidence 4566778887755 44555554332 23334433333 4578899988855444444433 4778777788
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHH--HHHHHHH
Q psy4020 101 EVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASE--AMNDILA 178 (530)
Q Consensus 101 ~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~--~l~~iL~ 178 (530)
.+.+-+.|++|+||..|+.++.++ ..|++.+.+.+.+..++.|.++.|-...++-+.+.+ ..+|+..+ .+.+.+.
T Consensus 90 ~l~kdL~~~n~~ir~~AL~~L~~i--~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~-~~~p~~~~~~~~~~~l~ 166 (591)
T 2vgl_B 90 SFVKDCEDPNPLIRALAVRTMGCI--RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLH-DINAQMVEDQGFLDSLR 166 (591)
T ss_dssp HHGGGSSSSSHHHHHHHHHHHHTC--CSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHH-HSSCCCHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-hhChhhcccccHHHHHH
Confidence 999999999999999999999887 489999999999999999999998444433333333 33444332 4566666
Q ss_pred HHhhcccCCCCCcchhHHHHHHHHhccCCC-h-----HHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHH
Q psy4020 179 QVATNTETSKNVGNTILYETVLSIMDIKSE-S-----GLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRH 252 (530)
Q Consensus 179 ~~l~~~~~~~n~~~aV~~eai~~i~~l~~~-~-----~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~ 252 (530)
.++... ++.|...|+.++.++..+ + .+....+..|.+.+.+.++-.+-..++.+..+....+......
T Consensus 167 ~lL~d~------d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~ 240 (591)
T 2vgl_B 167 DLIADS------NPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSI 240 (591)
T ss_dssp HTTSCS------CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHH
T ss_pred HHhCCC------ChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHH
Confidence 666532 678999999999887542 2 1222345556566666788888888888877776666666667
Q ss_pred HHHHhhhccCCcHHHHHHHHHHHHhccC-----hhhHHHHHHHHHH---HhhhcCchhhhhhHHHHHHHHHhhCCCchhH
Q psy4020 253 RNTILECLKDPDVSIRRRALELSFALVN-----SANVRSMMKELLI---FLEKSEPDFKAHCSSNIVLCAERFAPNKRWH 324 (530)
Q Consensus 253 ~~~i~~~l~d~d~~Ir~~aL~ll~~l~n-----~~Nv~~Iv~eL~~---yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~ 324 (530)
...+..++.+.+..|+..|...+..+.+ ++-+..++..+.. ++.+.|.+.|..++.+++.++.++|.....+
T Consensus 241 l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~ 320 (591)
T 2vgl_B 241 CERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQE 320 (591)
T ss_dssp HHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTC
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHH
Confidence 7778889999999999999999999873 4455544444333 4455788999999999999999887643333
Q ss_pred HHHHHHHHHHhhhhhhcchhhhHHHHHHHHHHhhcCcchHHHHHhhccCCCCCCCccccCCCCCcccccccCCCCcCCcc
Q psy4020 325 LDTLLKVLVANLLGFSNRALRDQRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHL 404 (530)
Q Consensus 325 vd~Ll~lL~~~~~~~v~~a~eiq~~a~e~~~ll~~~p~~r~~ile~l~~l~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~ 404 (530)
+..++... ....+++++++++..-+.+..++...+-+.+.|+.+.+.+++......+...+.++++...|..
T Consensus 321 ~~~~~~~~--------~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v 392 (591)
T 2vgl_B 321 IKVFFVKY--------NDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCV 392 (591)
T ss_dssp TTTTSCCT--------TSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhheecc--------CChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 22211000 1124577777777665666777776666666788887777665444444556666766667888
Q ss_pred hhhhhhhhc
Q psy4020 405 DTLLKVLVA 413 (530)
Q Consensus 405 ~~l~dll~~ 413 (530)
+.|++++..
T Consensus 393 ~~Ll~ll~~ 401 (591)
T 2vgl_B 393 STLLDLIQT 401 (591)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcc
Confidence 888888875
No 12
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.43 E-value=1.5e-11 Score=135.91 Aligned_cols=338 Identities=12% Similarity=0.136 Sum_probs=193.2
Q ss_pred HHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC--ChhhHHHHHHHHHHHhc
Q psy4020 30 CLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA--SPEMSRDLASEVERLMK 107 (530)
Q Consensus 30 vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~--~~el~~~l~~~V~~~l~ 107 (530)
+.+-+.+++...|-++--++..+. .++++--+...+.+=|.|+||++|--|+.+++++. .|+.++.+.+.+.+++.
T Consensus 112 l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~ 189 (618)
T 1w63_A 112 IKNDLNHSTQFVQGLALCTLGCMG--SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLN 189 (618)
T ss_dssp HHHHHSCSSSHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTT
T ss_pred HHHhcCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhC
Confidence 344666777777766666666664 35565566677777777788888888888877765 57777777777788888
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhH---HhhHHHHHHhc---------------------------------CCCCCcc-
Q psy4020 108 SSNAYIRKKAALCAYRIILKVPELM---EIFLPATRLLL---------------------------------SDKNHAI- 150 (530)
Q Consensus 108 ~~~~yVRK~A~la~~ki~~~~p~~i---~~~i~~l~~lL---------------------------------~d~n~~V- 150 (530)
|++|.|+-.|+.++..+...+|+.. ..+++.+.++| ...++..
T Consensus 190 D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~ 269 (618)
T 1w63_A 190 EKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS 269 (618)
T ss_dssp CCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH
Confidence 8888888888888777776665421 12222222111 1111111
Q ss_pred -----------------------hHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC
Q psy4020 151 -----------------------HQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKS 207 (530)
Q Consensus 151 -----------------------~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~ 207 (530)
......+.+..+.. ++...+...+.|..++.+. ++.|.|-|+.++..+..
T Consensus 270 ~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~~a~~~L~~~L~~~------d~~vr~~aL~~L~~i~~ 342 (618)
T 1w63_A 270 EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRVLAINILGRFLLNN------DKNIRYVALTSLLKTVQ 342 (618)
T ss_dssp HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTCS------STTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhCC------CCchHHHHHHHHHHHHh
Confidence 11122222222211 2222222333444444322 33455555555544322
Q ss_pred -ChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccCh--hhH
Q psy4020 208 -ESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNS--ANV 284 (530)
Q Consensus 208 -~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~--~Nv 284 (530)
.+.+.......+...+.++|..+|..+++.|..++.... +......+...+.+.|..+|+.++.-+..+|.. .+.
T Consensus 343 ~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~ 420 (618)
T 1w63_A 343 TDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSK 420 (618)
T ss_dssp HHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred hCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccH
Confidence 233333333455556667778888888888777765421 122234455555566777888888777777753 566
Q ss_pred HHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH-------------------h----------
Q psy4020 285 RSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA-------------------N---------- 335 (530)
Q Consensus 285 ~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~-------------------~---------- 335 (530)
...++.|++.++..+..++.+++..+..+..++|......+..+.+++.. .
T Consensus 421 ~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~ 500 (618)
T 1w63_A 421 RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEE 500 (618)
T ss_dssp HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSS
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccc
Confidence 66777777766655444555555555555544444333333333333332 0
Q ss_pred ---------hhhhhc-------c-------------------------------------hhhhHHHHHHHHHHhhcCcc
Q psy4020 336 ---------LLGFSN-------R-------------------------------------ALRDQRRALELSFALVNSAN 362 (530)
Q Consensus 336 ---------~~~~v~-------~-------------------------------------a~eiq~~a~e~~~ll~~~p~ 362 (530)
+.+++. + -.|+|+||.+|..++...|+
T Consensus 501 ~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~~~~ 580 (618)
T 1w63_A 501 EPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQRAVEYNALFKKYDH 580 (618)
T ss_dssp CCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTT
T ss_pred cccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcHH
Confidence 000000 0 11899999999999888889
Q ss_pred hHHHHHhhccCCCCCC
Q psy4020 363 VRSMMKELLIFLEKSE 378 (530)
Q Consensus 363 ~r~~ile~l~~l~~~~ 378 (530)
++..+++.||.+++..
T Consensus 581 ~~~~vl~~~P~~~~~~ 596 (618)
T 1w63_A 581 MRSALLERMPVMEKVT 596 (618)
T ss_dssp HHHHHHSCCCCCCC--
T ss_pred HHHHHhhcCCCCCccc
Confidence 9999999999776553
No 13
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.33 E-value=9.5e-11 Score=115.74 Aligned_cols=239 Identities=13% Similarity=0.056 Sum_probs=177.2
Q ss_pred HHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHH-
Q psy4020 63 ITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRL- 141 (530)
Q Consensus 63 ~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~- 141 (530)
.++.+.+.|.++|+.+|..|++.|+.++.++. .+.+.+++.|+++.||..|+.++.++.. .++.+...++.+.+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~----~~~L~~~l~d~~~~vR~~A~~aL~~l~~-~~~~~~~l~~~L~~~ 98 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQDA----VRLAIEFCSDKNYIRRDIGAFILGQIKI-CKKCEDNVFNILNNM 98 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHH----HHHHHHHHTCSSHHHHHHHHHHHHHSCC-CTTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCchH----HHHHHHHHcCCCHHHHHHHHHHHHHhcc-ccccchHHHHHHHHH
Confidence 56788899999999999999999999997654 5566778999999999999999987743 33445556666653
Q ss_pred hcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHH
Q psy4020 142 LLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGR 221 (530)
Q Consensus 142 lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~ 221 (530)
++.|.++.| ....++.|..++..++.......+.+...+.. .+..|...|+.++..+.... ++..|..
T Consensus 99 ~~~d~~~~v-r~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d------~~~~vR~~a~~aL~~~~~~~-----~~~~L~~ 166 (280)
T 1oyz_A 99 ALNDKSACV-RATAIESTAQRCKKNPIYSPKIVEQSQITAFD------KSTNVRRATAFAISVINDKA-----TIPLLIN 166 (280)
T ss_dssp HHHCSCHHH-HHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC------SCHHHHHHHHHHHHTC---C-----CHHHHHH
T ss_pred HhcCCCHHH-HHHHHHHHHHHhccCCcccHHHHHHHHHHhhC------CCHHHHHHHHHHHHhcCCHH-----HHHHHHH
Confidence 567777776 45567777777655544444555666555553 26789999999998876532 4567778
Q ss_pred hccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcCch
Q psy4020 222 FLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPD 301 (530)
Q Consensus 222 lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~ 301 (530)
++.++++.+|+.+...|..+....+..+ ..+..+++|+|..+|..++..|..+.++.-+..++ +.+.+ .+
T Consensus 167 ~l~d~~~~vr~~a~~aL~~~~~~~~~~~----~~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~L~----~~l~d--~~ 236 (280)
T 1oyz_A 167 LLKDPNGDVRNWAAFAININKYDNSDIR----DCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLC----DELKK--NT 236 (280)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTCCCHHHH----HHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHH----HHHTS--SS
T ss_pred HHcCCCHHHHHHHHHHHHhhccCcHHHH----HHHHHHhcCCCHHHHHHHHHHHHHhCCHhhHHHHH----HHhcC--cc
Confidence 8888999999999999999865556554 34566788999999999999999999887666554 44443 45
Q ss_pred hhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 302 FKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 302 ~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
+|..++.+++.+.. ...+..|.+++..
T Consensus 237 vr~~a~~aL~~i~~------~~~~~~L~~~l~~ 263 (280)
T 1oyz_A 237 VYDDIIEAAGELGD------KTLLPVLDTMLYK 263 (280)
T ss_dssp CCHHHHHHHHHHCC------GGGHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCc------hhhhHHHHHHHhc
Confidence 88888888887753 2456777777764
No 14
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.25 E-value=1.1e-11 Score=137.06 Aligned_cols=352 Identities=17% Similarity=0.219 Sum_probs=244.0
Q ss_pred hhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC--ChhhHHHHHHHHHHHhcCCCHHHHHHHH
Q psy4020 41 DKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA--SPEMSRDLASEVERLMKSSNAYIRKKAA 118 (530)
Q Consensus 41 ~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~--~~el~~~l~~~V~~~l~~~~~yVRK~A~ 118 (530)
.+|+.|+...-+ +-+....-++ |=+.++|...|-++--+++.+. .+|.+--+.+.+++-+.|+||++|-.|+
T Consensus 59 l~Kli~l~~~G~--d~s~~~~~vv----kl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lAL 132 (621)
T 2vgl_A 59 VCKLLFIFLLGH--DIDFGHMEAV----NLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLAL 132 (621)
T ss_dssp HHHHHHHHHHSC--CCCSCHHHHH----HGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHcCC--CCchhHHHHH----HHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 677778766443 3333332222 3567888888877777777665 4788888899999999999999999999
Q ss_pred HHHHHHHhhChhhHHhhHHHHHHhc--CCCCCcchHHHHHHHHHhhcCCChhhHH--HHHHHHHHHhhcccCCCCCcchh
Q psy4020 119 LCAYRIILKVPELMEIFLPATRLLL--SDKNHAIHQVKILKLLRILGKNDVEASE--AMNDILAQVATNTETSKNVGNTI 194 (530)
Q Consensus 119 la~~ki~~~~p~~i~~~i~~l~~lL--~d~n~~V~qi~iL~lL~~l~~~~~~~~~--~l~~iL~~~l~~~~~~~n~~~aV 194 (530)
-++.++ ..|++++.+.+.+.++| .|.++-|-...++-+.+.+. .+|+..+ .+.+.+..++... ++.|
T Consensus 133 r~L~~i--~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~-~~p~~~~~~~~~~~l~~lL~d~------d~~V 203 (621)
T 2vgl_A 133 HCIANV--GSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR-TSPDLVPMGDWTSRVVHLLNDQ------HLGV 203 (621)
T ss_dssp HHHHHH--CCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH-HCGGGCCCCSCHHHHHHHTTCS------CHHH
T ss_pred HHhhcc--CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH-hChhhcCchhHHHHHHHHhCCC------CccH
Confidence 999998 57999999999999999 99999984444443333332 2344333 4556666666532 6789
Q ss_pred HHHHHHHHhccCC-ChH----HHHHHHHHHHHhccCC-------------CchhHHHHHHHHHHHhcc-ChHHHHH---H
Q psy4020 195 LYETVLSIMDIKS-ESG----LRVLAVNILGRFLLNN-------------DKNIRYVALNTLLRTVYI-DTSAVQR---H 252 (530)
Q Consensus 195 ~~eai~~i~~l~~-~~~----l~~~~v~~L~~lL~s~-------------d~niry~aL~~L~~l~~~-~p~~~~~---~ 252 (530)
+..|+.++.++.. +++ +...+++.|.+++..+ ++=.+-..|+.+..+... +|+.... .
T Consensus 204 ~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~ 283 (621)
T 2vgl_A 204 VTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTEC 283 (621)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 9999998877643 333 3445566676766432 455777778777777654 4554332 2
Q ss_pred HHHHhhhc---------cCCc--HHHHHHHHHHHHhccChhh-HHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCC-
Q psy4020 253 RNTILECL---------KDPD--VSIRRRALELSFALVNSAN-VRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAP- 319 (530)
Q Consensus 253 ~~~i~~~l---------~d~d--~~Ir~~aL~ll~~l~n~~N-v~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~- 319 (530)
...++..+ .+.+ .+|--.+...+..+..... ....++.|..++...|.+.|-.++.++..++.++|.
T Consensus 284 L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~ 363 (621)
T 2vgl_A 284 LETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH 363 (621)
T ss_dssp HHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH
Confidence 22333222 1123 3888899999998875443 556778888898878999999999999999987752
Q ss_pred -CchhHHHHHHHHHH-HhhhhhhcchhhhHHHHHHHHHHhhcCcchHHHHHhhccCCCCCCCccccCCCCCcccccccCC
Q psy4020 320 -NKRWHLDTLLKVLV-ANLLGFSNRALRDQRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFA 397 (530)
Q Consensus 320 -~~~~~vd~Ll~lL~-~~~~~~v~~a~eiq~~a~e~~~ll~~~p~~r~~ile~l~~l~~~~~~l~~~~~~~~~~~~~~~~ 397 (530)
....+...++..|. +. -.+++.++.++..-+.+..|+...+-|.+.|+..++.+++......+...+.+|+
T Consensus 364 ~~~~~~~~~i~~~L~~d~-------d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~ 436 (621)
T 2vgl_A 364 EAVKTHIETVINALKTER-------DVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYA 436 (621)
T ss_dssp HHHHTTHHHHHHHHTTCC-------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCC-------CHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 23345566666665 31 1346777777766555667787777788888888887777655555667778899
Q ss_pred CCcCCcchhhhhhhhcc
Q psy4020 398 PNKRWHLDTLLKVLVAV 414 (530)
Q Consensus 398 p~~~~~~~~l~dll~~~ 414 (530)
|...|..+.|++++...
T Consensus 437 ~~~~~~v~~Ll~ll~~~ 453 (621)
T 2vgl_A 437 VDYTWYVDTILNLIRIA 453 (621)
T ss_dssp SSTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhh
Confidence 98899999999999853
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.18 E-value=5.1e-09 Score=109.63 Aligned_cols=284 Identities=15% Similarity=0.093 Sum_probs=207.2
Q ss_pred hHHHHHhhcCCCCchhHHHHHHHHhhcc--CChhHHH-----HHHHHHHhhcCCC-ChhhhhHHHHHHhcCCC--hhhH-
Q psy4020 27 QLECLKLIASSRFTDKRIGYLGAMLLLD--ERQDVHL-----LITNSLKNDLNSS-TQFVVGLALCTLGAIAS--PEMS- 95 (530)
Q Consensus 27 ~~~vikl~~S~~~~~Krl~YL~l~~~~~--~~~e~~~-----L~~Nsl~kDL~s~-n~~vr~lALr~l~~i~~--~el~- 95 (530)
....++.+.|++...|..+...+..++. .+++... -++..+.+-|.++ ++.+|-.|+++++++.. ++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4567888899999999998888876542 2332111 2456666777777 89999999999999875 3322
Q ss_pred ----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCC-CCCcchHHHHHHHHHhhcCC
Q psy4020 96 ----RDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSD-KNHAIHQVKILKLLRILGKN 165 (530)
Q Consensus 96 ----~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d-~n~~V~qi~iL~lL~~l~~~ 165 (530)
..+.+.+.+++.++++.||..|+.++..+....|+... ..++.+.+++.+ .+..+ +...+..|..++..
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v-~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTM-TRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHH-HHHHHHHHHHHHCC
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHH-HHHHHHHHHHHhCC
Confidence 34788899999999999999999999999887765332 467888899985 45544 55666777777644
Q ss_pred C-hh----hHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCC-hHHHH-----HHHHHHHHhccCCCchhHHHH
Q psy4020 166 D-VE----ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSE-SGLRV-----LAVNILGRFLLNNDKNIRYVA 234 (530)
Q Consensus 166 ~-~~----~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~-~~l~~-----~~v~~L~~lL~s~d~niry~a 234 (530)
. |. ........|..++... +..+...++.++.++... ++... .++..|..+|.+.++++|..+
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 254 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVS------DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPA 254 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCC------CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccC------CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHH
Confidence 3 21 1123344454555432 567888999998887653 22221 356778888888899999999
Q ss_pred HHHHHHHhccChHHHH-----HHHHHHhhhccCCcHHHHHHHHHHHHhcc--ChhhHH-----HHHHHHHHHhhhcCchh
Q psy4020 235 LNTLLRTVYIDTSAVQ-----RHRNTILECLKDPDVSIRRRALELSFALV--NSANVR-----SMMKELLIFLEKSEPDF 302 (530)
Q Consensus 235 L~~L~~l~~~~p~~~~-----~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~--n~~Nv~-----~Iv~eL~~yl~~~d~~~ 302 (530)
+..|..+....+...+ .-...+..++.+++..+|+.++..+..++ ++.+.. .++..|.+.+.+.+.+.
T Consensus 255 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v 334 (450)
T 2jdq_A 255 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRT 334 (450)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 9999999887664322 23556777888999999999999999998 445544 34567788888888999
Q ss_pred hhhhHHHHHHHHHhh
Q psy4020 303 KAHCSSNIVLCAERF 317 (530)
Q Consensus 303 ~~~~i~~I~~la~k~ 317 (530)
|..++.+++.++...
T Consensus 335 ~~~a~~~L~~l~~~~ 349 (450)
T 2jdq_A 335 RKEAAWAITNATSGG 349 (450)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999998764
No 16
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.18 E-value=1.1e-08 Score=116.71 Aligned_cols=306 Identities=9% Similarity=0.063 Sum_probs=212.6
Q ss_pred chHHHHHhhcCCCCchhHHHHHHHHhhccCChhH---------HHHHHHHHHhhcCCCChhhhhHHHHHHhcCCC---h-
Q psy4020 26 GQLECLKLIASSRFTDKRIGYLGAMLLLDERQDV---------HLLITNSLKNDLNSSTQFVVGLALCTLGAIAS---P- 92 (530)
Q Consensus 26 ~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~---------~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~---~- 92 (530)
.....++++++++...|..+...+..+.+..++. .-.++..+.+-++++++.+|..|+++++.+.. .
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~ 208 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA 208 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH
Confidence 4456778999999888888887777766544332 33466778888889999999999999998763 1
Q ss_pred --hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH----hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCC
Q psy4020 93 --EMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME----IFLPATRLLLSDKNHAIHQVKILKLLRILGKND 166 (530)
Q Consensus 93 --el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~ 166 (530)
...+.+.+.+.+.+.|+++.||+.|+-|+.++...+|+.+. .+++.+..++.|.+..|. ...++++..++...
T Consensus 209 ~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr-~~a~e~l~~l~~~~ 287 (852)
T 4fdd_A 209 LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVA-LEACEFWLTLAEQP 287 (852)
T ss_dssp HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHH-HHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHH-HHHHHHHHHHhcch
Confidence 22457788888899999999999999999999999998764 456666677788877763 33456666665431
Q ss_pred h------hhHHHHHHHHHHHhhc---------cc--C-CCC----CcchhHHHHHHHHhccCC--ChHHHHHHHHHHHHh
Q psy4020 167 V------EASEAMNDILAQVATN---------TE--T-SKN----VGNTILYETVLSIMDIKS--ESGLRVLAVNILGRF 222 (530)
Q Consensus 167 ~------~~~~~l~~iL~~~l~~---------~~--~-~~n----~~~aV~~eai~~i~~l~~--~~~l~~~~v~~L~~l 222 (530)
. .....+...+...+.. .+ . ... ....|...|+.++..+.. .......+...+..+
T Consensus 288 ~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~ 367 (852)
T 4fdd_A 288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKEL 367 (852)
T ss_dssp THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1 0112333333333210 11 0 000 134566666666544421 123445566777788
Q ss_pred ccCCCchhHHHHHHHHHHHhccChHHHH----HHHHHHhhhccCCcHHHHHHHHHHHHhccC-------hhhHHHHHHHH
Q psy4020 223 LLNNDKNIRYVALNTLLRTVYIDTSAVQ----RHRNTILECLKDPDVSIRRRALELSFALVN-------SANVRSMMKEL 291 (530)
Q Consensus 223 L~s~d~niry~aL~~L~~l~~~~p~~~~----~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n-------~~Nv~~Iv~eL 291 (530)
+.++++.+|..++..+..++...++.+. .....++.+++|+++.+|..+...+..++. ......++..|
T Consensus 368 l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L 447 (852)
T 4fdd_A 368 LFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTEL 447 (852)
T ss_dssp HTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 8888999999999999999876655443 334556678899999999999999988775 24567888899
Q ss_pred HHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHH
Q psy4020 292 LIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVL 332 (530)
Q Consensus 292 ~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL 332 (530)
.+.+.+.+...|..++.+++.+++...+...-|++.++..|
T Consensus 448 ~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L 488 (852)
T 4fdd_A 448 LKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTL 488 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHH
Confidence 98888888899999999999999876544434444444433
No 17
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.16 E-value=5.5e-09 Score=102.97 Aligned_cols=251 Identities=12% Similarity=0.100 Sum_probs=185.0
Q ss_pred hHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC-ChhhHHHHHHHHH-H
Q psy4020 27 QLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA-SPEMSRDLASEVE-R 104 (530)
Q Consensus 27 ~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~-~~el~~~l~~~V~-~ 104 (530)
....++++.+++...|+.+--++..+. .++ ++..+.+-|.++++.+|..|..+|+.+. .++..+.+.+.+. .
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~--~~~----~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~ 98 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG--GQD----AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNM 98 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC--CHH----HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC--Cch----HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 456778889998888888777776664 233 4567788889999999999999999998 4455666666666 4
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcc
Q psy4020 105 LMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNT 184 (530)
Q Consensus 105 ~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~ 184 (530)
++.|+++.||..|+.++.++....|...+..++.+..++.|.++.| .......|..++. +.. ...|...+...
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~v-R~~a~~aL~~~~~--~~~----~~~L~~~l~d~ 171 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNV-RRATAFAISVIND--KAT----IPLLINLLKDP 171 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHH-HHHHHHHHHTC-----CC----HHHHHHHHTCS
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHH-HHHHHHHHHhcCC--HHH----HHHHHHHHcCC
Confidence 6789999999999999999988777777788899999999999877 4455666666553 222 23333444432
Q ss_pred cCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCc
Q psy4020 185 ETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPD 264 (530)
Q Consensus 185 ~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d 264 (530)
+..|...|+..+..+.... ..++..|..+|.+.++.+|..++..|..+. ++..+ ..+..++.|++
T Consensus 172 ------~~~vr~~a~~aL~~~~~~~---~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--~~~~~----~~L~~~l~d~~ 236 (280)
T 1oyz_A 172 ------NGDVRNWAAFAININKYDN---SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--DKRVL----SVLCDELKKNT 236 (280)
T ss_dssp ------SHHHHHHHHHHHHHHTCCC---HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--CGGGH----HHHHHHHTSSS
T ss_pred ------CHHHHHHHHHHHHhhccCc---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--CHhhH----HHHHHHhcCcc
Confidence 5679999999988775332 135667888888889999999999998886 34443 34556677765
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHHHHHHhhh-cCchhhhhhHHHHH
Q psy4020 265 VSIRRRALELSFALVNSANVRSMMKELLIFLEK-SEPDFKAHCSSNIV 311 (530)
Q Consensus 265 ~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~-~d~~~~~~~i~~I~ 311 (530)
+|..+.+.+..+.++. .+..|.+.+.+ .+.+++..++.++.
T Consensus 237 --vr~~a~~aL~~i~~~~----~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 237 --VYDDIIEAAGELGDKT----LLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp --CCHHHHHHHHHHCCGG----GHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred --HHHHHHHHHHhcCchh----hhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 9999999999998864 45566677755 46678887777654
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.15 E-value=8.8e-09 Score=111.16 Aligned_cols=288 Identities=13% Similarity=0.077 Sum_probs=210.9
Q ss_pred CchHHHHHhhcCCCCchhHHHHHHHHhhccC--ChhH--HH--HHHHHHHhhcCCC-ChhhhhHHHHHHhcCCC--hhhH
Q psy4020 25 FGQLECLKLIASSRFTDKRIGYLGAMLLLDE--RQDV--HL--LITNSLKNDLNSS-TQFVVGLALCTLGAIAS--PEMS 95 (530)
Q Consensus 25 f~~~~vikl~~S~~~~~Krl~YL~l~~~~~~--~~e~--~~--L~~Nsl~kDL~s~-n~~vr~lALr~l~~i~~--~el~ 95 (530)
......++.+.|++...++.+-.++..++.. ++.. +. -++..|.+-|.++ ++.+|-.|+.+|+++.. ++..
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 4456788899999988888888888777543 2321 11 2467777888887 89999999999999886 4443
Q ss_pred H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCC
Q psy4020 96 R-----DLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSDKNHAIHQVKILKLLRILGKN 165 (530)
Q Consensus 96 ~-----~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~ 165 (530)
. ...+.+.+++.++++.||..|+-++.++....|+.-. ..++.+.+++.+.++.+ +...+..|..++..
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v-~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSL-IRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHH-HHHHHHHHHHHHCC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHH-HHHHHHHHHHHhCC
Confidence 3 3478888999999999999999999999886665322 47888999998866665 44556677777644
Q ss_pred C-hh----hHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCC-hHHHH-----HHHHHHHHhccCCCchhHHHH
Q psy4020 166 D-VE----ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSE-SGLRV-----LAVNILGRFLLNNDKNIRYVA 234 (530)
Q Consensus 166 ~-~~----~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~-~~l~~-----~~v~~L~~lL~s~d~niry~a 234 (530)
. +. ........|..++... +..|...|+.++.++... +.... .++..|..+|.+.++.+|..+
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~------d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a 319 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSM------DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA 319 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCC------CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCC------CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHH
Confidence 3 22 1122344454555432 567899999998887643 32222 345678888888899999999
Q ss_pred HHHHHHHhccChHHHH-----HHHHHHhhhccCCcHHHHHHHHHHHHhcc--ChhhHHH-----HHHHHHHHhhhcCchh
Q psy4020 235 LNTLLRTVYIDTSAVQ-----RHRNTILECLKDPDVSIRRRALELSFALV--NSANVRS-----MMKELLIFLEKSEPDF 302 (530)
Q Consensus 235 L~~L~~l~~~~p~~~~-----~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~--n~~Nv~~-----Iv~eL~~yl~~~d~~~ 302 (530)
+..|..++...+...+ .....+..++.+++..+|..|+..|..++ +++.+.. ++..|...+.+.+.++
T Consensus 320 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v 399 (530)
T 1wa5_B 320 LRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKT 399 (530)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 9999999876654322 23456777889999999999999999998 4455543 4467888888888999
Q ss_pred hhhhHHHHHHHHHhhCC
Q psy4020 303 KAHCSSNIVLCAERFAP 319 (530)
Q Consensus 303 ~~~~i~~I~~la~k~~~ 319 (530)
+..++.+++.++....+
T Consensus 400 ~~~a~~aL~~l~~~~~~ 416 (530)
T 1wa5_B 400 KKEACWAISNASSGGLQ 416 (530)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999886543
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.14 E-value=4.2e-08 Score=102.64 Aligned_cols=285 Identities=12% Similarity=0.038 Sum_probs=209.7
Q ss_pred chHHHHHhhcCC-CCchhHHHHHHHHhhccCChhHHH-----HHHHHHHhhcCCCChhhhhHHHHHHhcCCCh--hhHH-
Q psy4020 26 GQLECLKLIASS-RFTDKRIGYLGAMLLLDERQDVHL-----LITNSLKNDLNSSTQFVVGLALCTLGAIASP--EMSR- 96 (530)
Q Consensus 26 ~~~~vikl~~S~-~~~~Krl~YL~l~~~~~~~~e~~~-----L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~--el~~- 96 (530)
+....++++.++ +...+.-+.-++..+...+++... -++..+.+-|+++++.+|..|+.+|+++... +..+
T Consensus 65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~ 144 (450)
T 2jdq_A 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144 (450)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 345567888888 788888888888877765544221 2567788888999999999999999998753 2222
Q ss_pred ----HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhC-hh----hHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCC
Q psy4020 97 ----DLASEVERLMKS-SNAYIRKKAALCAYRIILKV-PE----LMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKND 166 (530)
Q Consensus 97 ----~l~~~V~~~l~~-~~~yVRK~A~la~~ki~~~~-p~----~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~ 166 (530)
.+.+.+.+++.+ .++.||+.|+.++..+.+.. |. .+...++.+.+++.+.|+.+ +......|..++...
T Consensus 145 ~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v-~~~a~~~L~~l~~~~ 223 (450)
T 2jdq_A 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDV-LADACWALSYLSDGP 223 (450)
T ss_dssp HHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHH-HHHHHHHHHHHTSSS
T ss_pred HHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHCCC
Confidence 357888889985 79999999999999998754 42 34678999999999888765 556677788887765
Q ss_pred hhhHHHH-----HHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCC-hHHHH-----HHHHHHHHhccCCCchhHHHHH
Q psy4020 167 VEASEAM-----NDILAQVATNTETSKNVGNTILYETVLSIMDIKSE-SGLRV-----LAVNILGRFLLNNDKNIRYVAL 235 (530)
Q Consensus 167 ~~~~~~l-----~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~-~~l~~-----~~v~~L~~lL~s~d~niry~aL 235 (530)
++..+.+ .+.|..++.. .+..|...|+.++.++... +...+ .++..|..+|.++++.+|..++
T Consensus 224 ~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~ 297 (450)
T 2jdq_A 224 NDKIQAVIDAGVCRRLVELLMH------NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEAC 297 (450)
T ss_dssp HHHHHHHHHTTTHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHCC------CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHH
Confidence 5433322 2334444432 2567889999998887643 22221 3667788889888999999999
Q ss_pred HHHHHHhccChHHHH-----HHHHHHhhhccCCcHHHHHHHHHHHHhccC---hhhHHH-----HHHHHHHHhhhcCchh
Q psy4020 236 NTLLRTVYIDTSAVQ-----RHRNTILECLKDPDVSIRRRALELSFALVN---SANVRS-----MMKELLIFLEKSEPDF 302 (530)
Q Consensus 236 ~~L~~l~~~~p~~~~-----~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n---~~Nv~~-----Iv~eL~~yl~~~d~~~ 302 (530)
..|..++...+...+ .....++.++.+++..+|+.+...+..++. ++++.. ++..|.+.+.+.+.++
T Consensus 298 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 377 (450)
T 2jdq_A 298 WTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKI 377 (450)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHH
Confidence 999999876554332 234566778888899999999999999974 345543 4567777887778899
Q ss_pred hhhhHHHHHHHHHhh
Q psy4020 303 KAHCSSNIVLCAERF 317 (530)
Q Consensus 303 ~~~~i~~I~~la~k~ 317 (530)
+..++.++..++...
T Consensus 378 ~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 378 VQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999888754
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.08 E-value=3.1e-08 Score=106.68 Aligned_cols=284 Identities=15% Similarity=0.072 Sum_probs=204.1
Q ss_pred chHHHHHhhcCCCCchhHHHHHHHHhhccCC--hhHHH----HHHHHHHhhcCCCC-hhhhhHHHHHHhcCCC--hhhHH
Q psy4020 26 GQLECLKLIASSRFTDKRIGYLGAMLLLDER--QDVHL----LITNSLKNDLNSST-QFVVGLALCTLGAIAS--PEMSR 96 (530)
Q Consensus 26 ~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~--~e~~~----L~~Nsl~kDL~s~n-~~vr~lALr~l~~i~~--~el~~ 96 (530)
....+++++.+++...+..+--++..++... +.... =++..|.+-|.+++ +.+|-.|+.+|+++.. ++...
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 3567889999999888888777776664332 21111 14566777777776 9999999999999886 44332
Q ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcC-CCCCcchHHHHHHHHHhhcCC
Q psy4020 97 -----DLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLS-DKNHAIHQVKILKLLRILGKN 165 (530)
Q Consensus 97 -----~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~-d~n~~V~qi~iL~lL~~l~~~ 165 (530)
..++.+.+++.++++.||..|+.++.++....|+... ..++.+..+|. +.++.+ +......|..++..
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v-~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSM-LRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHH-HHHHHHHHHHHHCS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHH-HHHHHHHHHHHHcC
Confidence 3678899999999999999999999999877665332 46788888884 445444 55566677776654
Q ss_pred Chhh----HHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCCh-HHHH-----HHHHHHHHhccCCCchhHHHHH
Q psy4020 166 DVEA----SEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSES-GLRV-----LAVNILGRFLLNNDKNIRYVAL 235 (530)
Q Consensus 166 ~~~~----~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~-~l~~-----~~v~~L~~lL~s~d~niry~aL 235 (530)
.|.. .......|..++.. .+..|...|+.++.++...+ .... .++..|..+|.+.++.++..++
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~------~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~ 307 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHS------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL 307 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTC------CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHH
Confidence 3221 12234445555543 25679999999998886532 2222 2466888899888999999999
Q ss_pred HHHHHHhccChHHHHH-----HHHHHhhhccCC-cHHHHHHHHHHHHhccC--hhhHHHH-----HHHHHHHhhhcCchh
Q psy4020 236 NTLLRTVYIDTSAVQR-----HRNTILECLKDP-DVSIRRRALELSFALVN--SANVRSM-----MKELLIFLEKSEPDF 302 (530)
Q Consensus 236 ~~L~~l~~~~p~~~~~-----~~~~i~~~l~d~-d~~Ir~~aL~ll~~l~n--~~Nv~~I-----v~eL~~yl~~~d~~~ 302 (530)
..|..++...+...+. -...+..++.++ +..+++.|...+.+++. +..+..+ +..|.+.+...+.+.
T Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v 387 (528)
T 4b8j_A 308 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDI 387 (528)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 9999998766543321 245667778888 89999999999999973 4444433 366777887788899
Q ss_pred hhhhHHHHHHHHHh
Q psy4020 303 KAHCSSNIVLCAER 316 (530)
Q Consensus 303 ~~~~i~~I~~la~k 316 (530)
+..++.+++.++..
T Consensus 388 ~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 388 KKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999876
No 21
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.06 E-value=1.1e-08 Score=110.83 Aligned_cols=300 Identities=15% Similarity=0.163 Sum_probs=178.2
Q ss_pred HhhcCCCCchhHHHHHHHHhhccCChh-HHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC----ChhhHHHHHHHHHHHh
Q psy4020 32 KLIASSRFTDKRIGYLGAMLLLDERQD-VHLLITNSLKNDLNSSTQFVVGLALCTLGAIA----SPEMSRDLASEVERLM 106 (530)
Q Consensus 32 kl~~S~~~~~Krl~YL~l~~~~~~~~e-~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~----~~el~~~l~~~V~~~l 106 (530)
++..+++...|..+...+..++..-++ ..--+.+.+.+-++++++.+|..|+++++.+. .+...+.+.+.+.+++
T Consensus 133 ~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~ 212 (588)
T 1b3u_A 133 RLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLA 212 (588)
T ss_dssp HHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHh
Confidence 344555555555555444444433221 11123445555567788888888888887763 2344466777777788
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChh--hHHhhHHHHHHhcCCCCCcch--------H-----------HHHHHHHHhh-cC
Q psy4020 107 KSSNAYIRKKAALCAYRIILKVPE--LMEIFLPATRLLLSDKNHAIH--------Q-----------VKILKLLRIL-GK 164 (530)
Q Consensus 107 ~~~~~yVRK~A~la~~ki~~~~p~--~i~~~i~~l~~lL~d~n~~V~--------q-----------i~iL~lL~~l-~~ 164 (530)
.|.++.||+.|+.|+..+....|+ ..+.+++.+.+++.|.+..|- . -.++..+..+ ..
T Consensus 213 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 292 (588)
T 1b3u_A 213 SDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKD 292 (588)
T ss_dssp TCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTC
T ss_pred cCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCC
Confidence 888888888888888777765543 234566666677766665440 0 0112222111 11
Q ss_pred CChhhHHHHHHHHHHHhhccc------------------CCCCCcchhHHHHHHHHhccCC---ChHHHHHHHHHHHHhc
Q psy4020 165 NDVEASEAMNDILAQVATNTE------------------TSKNVGNTILYETVLSIMDIKS---ESGLRVLAVNILGRFL 223 (530)
Q Consensus 165 ~~~~~~~~l~~iL~~~l~~~~------------------~~~n~~~aV~~eai~~i~~l~~---~~~l~~~~v~~L~~lL 223 (530)
.+++........+..+..... ..+..+..|...++.++..+.. ...........+..++
T Consensus 293 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l 372 (588)
T 1b3u_A 293 CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 372 (588)
T ss_dssp SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Confidence 222222211111111111000 0001234566666665555421 1111223445566777
Q ss_pred cCCCchhHHHHHHHHHHHhccCh-H-HHHHHHHHHhhhccCCcHHHHHHHHHHHHhccCh----hhHHHHHHHHHHHhhh
Q psy4020 224 LNNDKNIRYVALNTLLRTVYIDT-S-AVQRHRNTILECLKDPDVSIRRRALELSFALVNS----ANVRSMMKELLIFLEK 297 (530)
Q Consensus 224 ~s~d~niry~aL~~L~~l~~~~p-~-~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~----~Nv~~Iv~eL~~yl~~ 297 (530)
.+.++++|..++..+..+....+ + ........+..++.|++..+|..+++.+..++.. .....++.-+...+.+
T Consensus 373 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 452 (588)
T 1b3u_A 373 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 452 (588)
T ss_dssp TCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGC
T ss_pred CCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 77889999999999988876432 2 2234455666778888899999999998877642 1124677888888888
Q ss_pred cCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHH
Q psy4020 298 SEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLV 333 (530)
Q Consensus 298 ~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~ 333 (530)
.+.+.|..++.+++.++..+.+ +|+.+.++..|.
T Consensus 453 ~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~ 486 (588)
T 1b3u_A 453 HVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVL 486 (588)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCH--HHHHHHTHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHH
Confidence 8888999999999999998865 477777777664
No 22
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.05 E-value=2.6e-07 Score=99.48 Aligned_cols=305 Identities=15% Similarity=0.098 Sum_probs=210.3
Q ss_pred CCchHHHHHhhcCCCCchhHHHHHHHHhhc-c-CChhH--HHH--HHHHHHhhcC-CCChhhhhHHHHHHhcCC--Chhh
Q psy4020 24 HFGQLECLKLIASSRFTDKRIGYLGAMLLL-D-ERQDV--HLL--ITNSLKNDLN-SSTQFVVGLALCTLGAIA--SPEM 94 (530)
Q Consensus 24 sf~~~~vikl~~S~~~~~Krl~YL~l~~~~-~-~~~e~--~~L--~~Nsl~kDL~-s~n~~vr~lALr~l~~i~--~~el 94 (530)
+|...++|+.+.|+|.+.+.-+--.+.-++ . .+|.. ++- ++..|.+-|. +.++.++-.|..+|++|. +++.
T Consensus 56 ~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 56 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 466789999999999998887766666444 2 33422 221 4566777775 456888888888888874 4554
Q ss_pred HHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCCCCCcc----hHHHHHHHHH
Q psy4020 95 SRD-----LASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSDKNHAI----HQVKILKLLR 160 (530)
Q Consensus 95 ~~~-----l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d~n~~V----~qi~iL~lL~ 160 (530)
... .++.+.++|.++++.||..|+-|+..+....|+.-. ..++.+..+|.+.+... .+-.+...+.
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 215 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 333 568899999999999999999999999887776433 46788899998776543 2333444555
Q ss_pred hhcCCC-h----hhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCCh-HHHH-----HHHHHHHHhccCCCch
Q psy4020 161 ILGKND-V----EASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSES-GLRV-----LAVNILGRFLLNNDKN 229 (530)
Q Consensus 161 ~l~~~~-~----~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~-~l~~-----~~v~~L~~lL~s~d~n 229 (530)
.++... + .........|..++.+. +.-|...|+.++.++...+ +... .++..|..+|.+.+..
T Consensus 216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~------~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 289 (510)
T 3ul1_B 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHN------DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 289 (510)
T ss_dssp HHHCCCSSCCCHHHHHHHHHHHHHHTTCS------CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHH
T ss_pred HHhhcccchhHHHHHHhHHHHHHHHHhcC------CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChh
Confidence 555432 1 11234455565655532 5678999999998886542 2222 2356788889999999
Q ss_pred hHHHHHHHHHHHhccChHHHH-----HHHHHHhhhccCCcHHHHHHHHHHHHhcc--ChhhHHH-----HHHHHHHHhhh
Q psy4020 230 IRYVALNTLLRTVYIDTSAVQ-----RHRNTILECLKDPDVSIRRRALELSFALV--NSANVRS-----MMKELLIFLEK 297 (530)
Q Consensus 230 iry~aL~~L~~l~~~~p~~~~-----~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~--n~~Nv~~-----Iv~eL~~yl~~ 297 (530)
++.-+++.|..++..++.... .-...+..++.+++..+|+.+.-.+.+++ ++.+... ++.-|...+.+
T Consensus 290 v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~ 369 (510)
T 3ul1_B 290 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 369 (510)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred hhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC
Confidence 999999999999876654321 12234556788999999999999999987 3444443 34567888888
Q ss_pred cCchhhhhhHHHHHHHHHhhCCCc------hhHHHHHHHHHHH
Q psy4020 298 SEPDFKAHCSSNIVLCAERFAPNK------RWHLDTLLKVLVA 334 (530)
Q Consensus 298 ~d~~~~~~~i~~I~~la~k~~~~~------~~~vd~Ll~lL~~ 334 (530)
.+.+.|.+++.+|+.++..-.+.. .-++..|+++|..
T Consensus 370 ~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~ 412 (510)
T 3ul1_B 370 ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 412 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 899999999999999887532211 1234556666654
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.03 E-value=7e-08 Score=104.04 Aligned_cols=285 Identities=12% Similarity=0.054 Sum_probs=209.0
Q ss_pred chHHHHHhhcCC-CCchhHHHHHHHHhhccCChhHHHH-----HHHHHHhhcCCCChhhhhHHHHHHhcCCC--hhhH--
Q psy4020 26 GQLECLKLIASS-RFTDKRIGYLGAMLLLDERQDVHLL-----ITNSLKNDLNSSTQFVVGLALCTLGAIAS--PEMS-- 95 (530)
Q Consensus 26 ~~~~vikl~~S~-~~~~Krl~YL~l~~~~~~~~e~~~L-----~~Nsl~kDL~s~n~~vr~lALr~l~~i~~--~el~-- 95 (530)
+....++++.++ +...+..+--++..+...+++.... ++..|.+-|.++++.+|..|+.+|+++.. ++..
T Consensus 131 ~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~ 210 (530)
T 1wa5_B 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210 (530)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH
Confidence 345577888887 7888888888888888765543222 35667777778899999999999999874 3322
Q ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hh----hHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCCh
Q psy4020 96 ---RDLASEVERLMKSSNAYIRKKAALCAYRIILKV-PE----LMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDV 167 (530)
Q Consensus 96 ---~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~-p~----~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~ 167 (530)
..+.+.+.+++.+.++.||+.|+.|+..+.... |. .....++.+..+|.+.++.| +...+..|..++...+
T Consensus 211 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v-~~~a~~~L~~L~~~~~ 289 (530)
T 1wa5_B 211 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTET-LVDACWAISYLSDGPQ 289 (530)
T ss_dssp HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHH-HHHHHHHHHHHHSSCH
T ss_pred HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHH-HHHHHHHHHHHhCCCH
Confidence 236788999999999999999999999998754 32 23478899999999888765 5566777888877665
Q ss_pred hhHHHHH-----HHHHHHhhcccCCCCCcchhHHHHHHHHhccCCC-hHHHH-----HHHHHHHHhccCCCchhHHHHHH
Q psy4020 168 EASEAMN-----DILAQVATNTETSKNVGNTILYETVLSIMDIKSE-SGLRV-----LAVNILGRFLLNNDKNIRYVALN 236 (530)
Q Consensus 168 ~~~~~l~-----~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~-~~l~~-----~~v~~L~~lL~s~d~niry~aL~ 236 (530)
...+.+. ..|..++.. .+..|...|+.++.++... +.... .++..|..+|.++++.+|..++.
T Consensus 290 ~~~~~~~~~~~v~~Lv~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~ 363 (530)
T 1wa5_B 290 EAIQAVIDVRIPKRLVELLSH------ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 363 (530)
T ss_dssp HHHHHHHHTTCHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHCC------CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHH
Confidence 5433332 334444432 2567999999999888643 32222 35567888888889999999999
Q ss_pred HHHHHhccChHHHH-----HHHHHHhhhccCCcHHHHHHHHHHHHhccCh-----hhHHH-----HHHHHHHHhhhcCch
Q psy4020 237 TLLRTVYIDTSAVQ-----RHRNTILECLKDPDVSIRRRALELSFALVNS-----ANVRS-----MMKELLIFLEKSEPD 301 (530)
Q Consensus 237 ~L~~l~~~~p~~~~-----~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~-----~Nv~~-----Iv~eL~~yl~~~d~~ 301 (530)
.|..++...+...+ .....++.++.+++..+|..++..|..++.. ++... ++..|...+.+.+.+
T Consensus 364 aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 443 (530)
T 1wa5_B 364 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR 443 (530)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHH
Confidence 99999876665433 2345667778888899999999999999753 34443 456777777777888
Q ss_pred hhhhhHHHHHHHHHhh
Q psy4020 302 FKAHCSSNIVLCAERF 317 (530)
Q Consensus 302 ~~~~~i~~I~~la~k~ 317 (530)
.+..++.++..++...
T Consensus 444 v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 444 IIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999988887654
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.01 E-value=2.1e-07 Score=100.09 Aligned_cols=285 Identities=13% Similarity=0.102 Sum_probs=209.4
Q ss_pred chHHHHHhhcCCC-CchhHHHHHHHHhhccCChhHHHH-----HHHHHHhhcCCCChhhhhHHHHHHhcCCC--hhhHH-
Q psy4020 26 GQLECLKLIASSR-FTDKRIGYLGAMLLLDERQDVHLL-----ITNSLKNDLNSSTQFVVGLALCTLGAIAS--PEMSR- 96 (530)
Q Consensus 26 ~~~~vikl~~S~~-~~~Krl~YL~l~~~~~~~~e~~~L-----~~Nsl~kDL~s~n~~vr~lALr~l~~i~~--~el~~- 96 (530)
+....++++.+++ ...+..+.-++..+...+++.... ++..|.+-|.++++.+|..|+.+|+++.. ++...
T Consensus 118 ~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 197 (528)
T 4b8j_A 118 VVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDL 197 (528)
T ss_dssp CHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 3445678888887 788888888888888766553322 56778888999999999999999999862 33222
Q ss_pred ----HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhChh----hHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCCh
Q psy4020 97 ----DLASEVERLM-KSSNAYIRKKAALCAYRIILKVPE----LMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDV 167 (530)
Q Consensus 97 ----~l~~~V~~~l-~~~~~yVRK~A~la~~ki~~~~p~----~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~ 167 (530)
...+.+.+++ .+.++.+|+.|+.++..+....|. .+...++.+..+|.+.++.+ +...+..|..++...+
T Consensus 198 i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v-~~~a~~aL~~l~~~~~ 276 (528)
T 4b8j_A 198 VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEV-LTDACWALSYLSDGTN 276 (528)
T ss_dssp HHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHH-HHHHHHHHHHHTSSCH
T ss_pred HHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHcCCH
Confidence 2467888888 678999999999999999886543 33568899999998888776 5566788888887665
Q ss_pred hhHHHH-----HHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC-ChHHHH-----HHHHHHHHhccCC-CchhHHHHH
Q psy4020 168 EASEAM-----NDILAQVATNTETSKNVGNTILYETVLSIMDIKS-ESGLRV-----LAVNILGRFLLNN-DKNIRYVAL 235 (530)
Q Consensus 168 ~~~~~l-----~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~-~~~l~~-----~~v~~L~~lL~s~-d~niry~aL 235 (530)
...+.+ .+.|..++... +..|...|+.++.++.. ++.... .++..|..+|.+. ++.+|..++
T Consensus 277 ~~~~~~~~~g~v~~Lv~lL~~~------~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~ 350 (528)
T 4b8j_A 277 DKIQAVIEAGVCPRLVELLLHP------SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEAC 350 (528)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCS------CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHcCC------ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHH
Confidence 543333 23444445432 56799999999988865 332222 2456788888877 899999999
Q ss_pred HHHHHHhccChHHHH-----HHHHHHhhhccCCcHHHHHHHHHHHHhccCh---hhHHHH-----HHHHHHHhhhcCchh
Q psy4020 236 NTLLRTVYIDTSAVQ-----RHRNTILECLKDPDVSIRRRALELSFALVNS---ANVRSM-----MKELLIFLEKSEPDF 302 (530)
Q Consensus 236 ~~L~~l~~~~p~~~~-----~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~---~Nv~~I-----v~eL~~yl~~~d~~~ 302 (530)
..|..++...+..++ .....++.++.+.|..+|..++..+..++.. ++...+ +..|...+...|.+.
T Consensus 351 ~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v 430 (528)
T 4b8j_A 351 WTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRI 430 (528)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 999999876665432 2235566778888999999999999998754 444433 466777777778888
Q ss_pred hhhhHHHHHHHHHhh
Q psy4020 303 KAHCSSNIVLCAERF 317 (530)
Q Consensus 303 ~~~~i~~I~~la~k~ 317 (530)
+..++.++..++...
T Consensus 431 ~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 431 VTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 988888888887644
No 25
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.00 E-value=1.2e-07 Score=90.93 Aligned_cols=214 Identities=14% Similarity=0.165 Sum_probs=156.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHH
Q psy4020 99 ASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAM 173 (530)
Q Consensus 99 ~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l 173 (530)
++.+.+.+.++++.+|..|+.++..+....++... ..++.+.++|.+.++.+ +...+..|..++..+++..+.+
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEV-QKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHH-HHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHH-HHHHHHHHHHHHcCChHHHHHH
Confidence 46677788888888888888888888777664333 46777888888777554 5666777777777656544433
Q ss_pred -----HHHHHHHhhcccCCCCCcchhHHHHHHHHhccC-CChHHHH-----HHHHHHHHhccCCCchhHHHHHHHHHHHh
Q psy4020 174 -----NDILAQVATNTETSKNVGNTILYETVLSIMDIK-SESGLRV-----LAVNILGRFLLNNDKNIRYVALNTLLRTV 242 (530)
Q Consensus 174 -----~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~-~~~~l~~-----~~v~~L~~lL~s~d~niry~aL~~L~~l~ 242 (530)
.+.+..++.+ .+..+...|+.++.++. .+++... .++..|..+|.++++.+|..++..|..+.
T Consensus 83 ~~~~~i~~l~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTS------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156 (252)
T ss_dssp HHTTHHHHHHHHTTC------SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHcC------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3344444442 25678889999988887 3443332 35677888998899999999999999998
Q ss_pred ccChHHHH-----HHHHHHhhhccCCcHHHHHHHHHHHHhccC--hhhHHHH-----HHHHHHHhhhcCchhhhhhHHHH
Q psy4020 243 YIDTSAVQ-----RHRNTILECLKDPDVSIRRRALELSFALVN--SANVRSM-----MKELLIFLEKSEPDFKAHCSSNI 310 (530)
Q Consensus 243 ~~~p~~~~-----~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n--~~Nv~~I-----v~eL~~yl~~~d~~~~~~~i~~I 310 (530)
...+...+ .....+..++.++|..++..++..+..++. +++...+ +..|.+.+.+.+.+.+..++.++
T Consensus 157 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 157 SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 76664321 235667788889999999999999999984 4444443 57788888888899999999999
Q ss_pred HHHHHhhCC
Q psy4020 311 VLCAERFAP 319 (530)
Q Consensus 311 ~~la~k~~~ 319 (530)
+.++...++
T Consensus 237 ~~l~~~~~~ 245 (252)
T 4hxt_A 237 ENIKSGGWL 245 (252)
T ss_dssp HHHHHTCBC
T ss_pred HHHHcCCCc
Confidence 999986543
No 26
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.99 E-value=5.6e-08 Score=105.11 Aligned_cols=309 Identities=11% Similarity=0.064 Sum_probs=198.5
Q ss_pred hhHHHHHHHHHhhhhcCCCCC--CCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhH--HHHHHHHHHhhcCCCChhh
Q psy4020 3 SIRQVINDAVERDTYLPKYPA--HFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDV--HLLITNSLKNDLNSSTQFV 78 (530)
Q Consensus 3 ei~~ei~~~~~~~i~mlG~d~--sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~--~~L~~Nsl~kDL~s~n~~v 78 (530)
|+|+++-..+..+...+|.+. +....-...++.+++...|+.+--++..+....++. .-.+...+.+=.+++++.+
T Consensus 63 ~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 142 (588)
T 1b3u_A 63 EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTS 142 (588)
T ss_dssp HHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHH
Confidence 455555555544443333321 223333445667788888988888888777654432 1123444444456778999
Q ss_pred hhHHHHHHhcCC---ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh--hHHhhHHHHHHhcCCCCCcchHH
Q psy4020 79 VGLALCTLGAIA---SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPE--LMEIFLPATRLLLSDKNHAIHQV 153 (530)
Q Consensus 79 r~lALr~l~~i~---~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~--~i~~~i~~l~~lL~d~n~~V~qi 153 (530)
|..|...++.+. .+...+.+.+.+.+++.|+++.||+.|+-++.++.+..++ ..+.+++.+..++.|.++.|- .
T Consensus 143 R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr-~ 221 (588)
T 1b3u_A 143 RTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVR-L 221 (588)
T ss_dssp HHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHH-T
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHH-H
Confidence 999988777654 3566778889999999999999999999999999887653 345678888899999887661 1
Q ss_pred HHHHHHHhhcCC-Ch-hhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC---ChHHHHHHHHHHHHhccCCCc
Q psy4020 154 KILKLLRILGKN-DV-EASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKS---ESGLRVLAVNILGRFLLNNDK 228 (530)
Q Consensus 154 ~iL~lL~~l~~~-~~-~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~---~~~l~~~~v~~L~~lL~s~d~ 228 (530)
..++.|..++.. ++ ...+.+...+...+.. .+..|...++.++..+.. .......++..+..++.+.++
T Consensus 222 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d------~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 295 (588)
T 1b3u_A 222 LAVEACVNIAQLLPQEDLEALVMPTLRQAAED------KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA 295 (588)
T ss_dssp THHHHHHHHHHHSCHHHHHHHTHHHHHHHHTC------SSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHccC------CCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcH
Confidence 223333333221 11 2233445555555442 245688888877655432 112233456677777888888
Q ss_pred hhHHHHHHHHHHHhccChH------HHHHHHHHHhhhccCCcHHHHHHHHHHHHhccC---h-hhHHHHHHHHHHHhhhc
Q psy4020 229 NIRYVALNTLLRTVYIDTS------AVQRHRNTILECLKDPDVSIRRRALELSFALVN---S-ANVRSMMKELLIFLEKS 298 (530)
Q Consensus 229 niry~aL~~L~~l~~~~p~------~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n---~-~Nv~~Iv~eL~~yl~~~ 298 (530)
++|-.+...+..++...+. ........+..+++|++..+|..+...+..++. + .-...++.-+...+.+.
T Consensus 296 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~ 375 (588)
T 1b3u_A 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDE 375 (588)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Confidence 9999999999888865431 223334445566788888899888888777753 1 22345566666777776
Q ss_pred CchhhhhhHHHHHHHHHhhC
Q psy4020 299 EPDFKAHCSSNIVLCAERFA 318 (530)
Q Consensus 299 d~~~~~~~i~~I~~la~k~~ 318 (530)
+.+.|..++.+++.++..++
T Consensus 376 ~~~Vr~~a~~~l~~l~~~~~ 395 (588)
T 1b3u_A 376 CPEVRLNIISNLDCVNEVIG 395 (588)
T ss_dssp CHHHHHHHHTTCHHHHHHSC
T ss_pred chHHHHHHHHHHHHHHHhcC
Confidence 77788888888877776543
No 27
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.99 E-value=1.4e-07 Score=107.63 Aligned_cols=297 Identities=15% Similarity=0.116 Sum_probs=199.8
Q ss_pred HHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC-------ChhhHHHHHHH
Q psy4020 29 ECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA-------SPEMSRDLASE 101 (530)
Q Consensus 29 ~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~-------~~el~~~l~~~ 101 (530)
++++...|+|-..|+-+.-.+..+ ..+|+........+. ++.+.++.+|-.|.-.+-+.. .++.-+.+-..
T Consensus 17 ~~l~~~~s~d~~~r~~Ae~~L~~~-~~~p~~~~~l~~il~-~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ 94 (852)
T 4fdd_A 17 QLLKESQSPDTTIQRTVQQKLEQL-NQYPDFNNYLIFVLT-KLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSE 94 (852)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH-TTSHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHH-HhCCCHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Confidence 345555688999999999988875 456776544444443 457788999999986655432 34556677788
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHH------HHH
Q psy4020 102 VERLMKSSNAYIRKKAALCAYRIILKV-PELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASE------AMN 174 (530)
Q Consensus 102 V~~~l~~~~~yVRK~A~la~~ki~~~~-p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~------~l~ 174 (530)
+.+++.++++.||++|+.++..+.+.+ |+.-+++++.+.+++.+.++.+ +-..+..|..++...+...+ .+.
T Consensus 95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~-r~~al~~L~~i~~~~~~~~~~~~~~~~~~ 173 (852)
T 4fdd_A 95 CLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNT-CEGAFGALQKICEDSAEILDSDVLDRPLN 173 (852)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHH-HHHHHHHHHHHHHHHTTHHHHCSSSSCHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHhHHHhchhhhcchHH
Confidence 888899999999999999999999875 3444467788888888877765 22334444443322121111 023
Q ss_pred HHHHHHhhcccCCCCCcchhHHHHHHHHhccCCC--hHH---HHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHH
Q psy4020 175 DILAQVATNTETSKNVGNTILYETVLSIMDIKSE--SGL---RVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAV 249 (530)
Q Consensus 175 ~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~--~~l---~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~ 249 (530)
.++..+++... ..+..|..+|++++..+-.. ..+ ....+..+..++.+.++.+|..+++.|..++..+|+.+
T Consensus 174 ~il~~l~~~l~---~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 174 IMIPKFLQFFK---HSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHHHHHTTTTT---CSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 33333333221 13667999999988765321 111 23456667777778899999999999999999999888
Q ss_pred HHHHHHHh----hhccCCcHHHHHHHHHHHHhccChh--------hHHHHHHHHHHHh-----------hh---------
Q psy4020 250 QRHRNTIL----ECLKDPDVSIRRRALELSFALVNSA--------NVRSMMKELLIFL-----------EK--------- 297 (530)
Q Consensus 250 ~~~~~~i~----~~l~d~d~~Ir~~aL~ll~~l~n~~--------Nv~~Iv~eL~~yl-----------~~--------- 297 (530)
.+|...++ .++.|+|..+|..|++.+..++... .+..++..+++.+ .+
T Consensus 251 ~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd 330 (852)
T 4fdd_A 251 LPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDD 330 (852)
T ss_dssp GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccc
Confidence 77765554 4667889999999999999998643 3445666666665 12
Q ss_pred --cCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 298 --SEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 298 --~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
.+...|+.+..+++.++..+++ ..+..++.++..
T Consensus 331 ~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~ 366 (852)
T 4fdd_A 331 TISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKE 366 (852)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHH
Confidence 1123577888899999988763 344555555443
No 28
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.94 E-value=5.2e-07 Score=97.49 Aligned_cols=304 Identities=15% Similarity=0.097 Sum_probs=207.0
Q ss_pred CchHHHHHhhcCCCCchhHHHHHHHHhhc--cCChhH--HH--HHHHHHHhhcC-CCChhhhhHHHHHHhcCCC--hhhH
Q psy4020 25 FGQLECLKLIASSRFTDKRIGYLGAMLLL--DERQDV--HL--LITNSLKNDLN-SSTQFVVGLALCTLGAIAS--PEMS 95 (530)
Q Consensus 25 f~~~~vikl~~S~~~~~Krl~YL~l~~~~--~~~~e~--~~--L~~Nsl~kDL~-s~n~~vr~lALr~l~~i~~--~el~ 95 (530)
....++++.+.|+|.+.+.-+--++..++ +.+|.. ++ =++..|.+-|. +.++.++-.|..+|++|.. ++-.
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 45678999999999988777766665444 223321 11 13556666664 5678898888888888753 3332
Q ss_pred H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCCCCCcc----hHHHHHHHHHh
Q psy4020 96 R-----DLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSDKNHAI----HQVKILKLLRI 161 (530)
Q Consensus 96 ~-----~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d~n~~V----~qi~iL~lL~~ 161 (530)
. ..++.+.+++.++++.||..|+.|+..+....|+.-. ..++.+..+|.+.+... .+-.+...+..
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 2 2568888999999999999999999999887776433 46788889998766543 23334445555
Q ss_pred hcCCC-h----hhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCC-hHHHH-----HHHHHHHHhccCCCchh
Q psy4020 162 LGKND-V----EASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSE-SGLRV-----LAVNILGRFLLNNDKNI 230 (530)
Q Consensus 162 l~~~~-~----~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~-~~l~~-----~~v~~L~~lL~s~d~ni 230 (530)
++... + .........|..++.+. +..|...|+.++.++... .+... .++..|..+|.+.++.+
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~------~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 309 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHN------DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 309 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSS------CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCC------cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhH
Confidence 55432 1 12234455566666532 567889999998887643 22222 23567888899999999
Q ss_pred HHHHHHHHHHHhccChHHHH-----HHHHHHhhhccCCcHHHHHHHHHHHHhcc--ChhhHHH-----HHHHHHHHhhhc
Q psy4020 231 RYVALNTLLRTVYIDTSAVQ-----RHRNTILECLKDPDVSIRRRALELSFALV--NSANVRS-----MMKELLIFLEKS 298 (530)
Q Consensus 231 ry~aL~~L~~l~~~~p~~~~-----~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~--n~~Nv~~-----Iv~eL~~yl~~~ 298 (530)
+..+++.|..++..++.... .-...+..++.+++..+|+.|.-.|..++ ++..... ++.-|...+.+.
T Consensus 310 ~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 389 (529)
T 3tpo_A 310 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 389 (529)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC
Confidence 99999999999876654321 12334566788999999999999999987 3444443 345677788888
Q ss_pred CchhhhhhHHHHHHHHHhhCCCc------hhHHHHHHHHHHH
Q psy4020 299 EPDFKAHCSSNIVLCAERFAPNK------RWHLDTLLKVLVA 334 (530)
Q Consensus 299 d~~~~~~~i~~I~~la~k~~~~~------~~~vd~Ll~lL~~ 334 (530)
+.+.+.+++.+|+.++..-.+.. .-++..|+++|..
T Consensus 390 ~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~ 431 (529)
T 3tpo_A 390 DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 431 (529)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC
Confidence 89999999999999886532211 1134556666654
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.92 E-value=2.5e-07 Score=88.53 Aligned_cols=210 Identities=19% Similarity=0.169 Sum_probs=156.0
Q ss_pred HHHHHhhcCCCChhhhhHHHHHHhcCCC--hhhHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH---
Q psy4020 64 TNSLKNDLNSSTQFVVGLALCTLGAIAS--PEMSR-----DLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME--- 133 (530)
Q Consensus 64 ~Nsl~kDL~s~n~~vr~lALr~l~~i~~--~el~~-----~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~--- 133 (530)
+..+.+-|.++++.+|-.|+.+|+++.. ++... ...+.+.+++.++++.||..|+.++..+....++...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4566777888888889889888888753 32322 3678888999999999999999999999876666443
Q ss_pred --hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHH-----HHHHHHHhhcccCCCCCcchhHHHHHHHHhccC
Q psy4020 134 --IFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAM-----NDILAQVATNTETSKNVGNTILYETVLSIMDIK 206 (530)
Q Consensus 134 --~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l-----~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~ 206 (530)
..++.+.++|.+.++.+ +...+..|..++..+++..+.+ .+.|..++.+ .+..+...|+.++.++.
T Consensus 84 ~~~~i~~l~~ll~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~------~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEV-QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS------TDSEVQKEAARALANIA 156 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHH-HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHcCCCHHH-HHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC------CCHHHHHHHHHHHHHHH
Confidence 46788889998877665 6677888888887666654433 3344444443 25679999999998886
Q ss_pred CC-hHHHH-----HHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHH-----HHHHHHhhhccCCcHHHHHHHHHHH
Q psy4020 207 SE-SGLRV-----LAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQ-----RHRNTILECLKDPDVSIRRRALELS 275 (530)
Q Consensus 207 ~~-~~l~~-----~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~-----~~~~~i~~~l~d~d~~Ir~~aL~ll 275 (530)
.. +.... .++..|..+|.++++++|..++..|..+...++...+ .....+..++.++|..+|..|+..|
T Consensus 157 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 157 SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 53 32222 3567888999889999999999999999976665332 2345677788899999999999999
Q ss_pred HhccC
Q psy4020 276 FALVN 280 (530)
Q Consensus 276 ~~l~n 280 (530)
..++.
T Consensus 237 ~~l~~ 241 (252)
T 4hxt_A 237 ENIKS 241 (252)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 98864
No 30
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.90 E-value=2.6e-08 Score=93.79 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=61.3
Q ss_pred HHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhc
Q psy4020 64 TNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLL 143 (530)
Q Consensus 64 ~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL 143 (530)
+..+.+.|.++++.+|..|++.|+.+..++.. +.+.+.+.|+++.||..|+.++.++- .| ..++.+.++|
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~----~~L~~~l~~~~~~vr~~a~~aL~~~~--~~----~~~~~L~~~l 90 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAV----EPLIKALKDEDAWVRRAAADALGQIG--DE----RAVEPLIKAL 90 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH----HHHHHHTTCSCHHHHHHHHHHHHHHC--CG----GGHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCccHH----HHHHHHHcCCCHHHHHHHHHHHHhhC--CH----HHHHHHHHHH
Confidence 46677778899999999999999999887554 45566888999999999999888763 23 3445555566
Q ss_pred CCCCCcchHHHHHHHHHhh
Q psy4020 144 SDKNHAIHQVKILKLLRIL 162 (530)
Q Consensus 144 ~d~n~~V~qi~iL~lL~~l 162 (530)
.|.|+.| +...++.|..+
T Consensus 91 ~~~~~~v-r~~a~~aL~~~ 108 (211)
T 3ltm_A 91 KDEDGWV-RQSAAVALGQI 108 (211)
T ss_dssp TCSSHHH-HHHHHHHHHHH
T ss_pred cCCCHHH-HHHHHHHHHHh
Confidence 6665554 33334444443
No 31
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.87 E-value=3.3e-08 Score=101.12 Aligned_cols=288 Identities=11% Similarity=0.088 Sum_probs=166.5
Q ss_pred HHhhcCCCCc-------hhHHHHHHHHhhccCCh-hHHHHHHHHHHhhcCCCChhhhhH---HHHHHhcCCChhhHHHHH
Q psy4020 31 LKLIASSRFT-------DKRIGYLGAMLLLDERQ-DVHLLITNSLKNDLNSSTQFVVGL---ALCTLGAIASPEMSRDLA 99 (530)
Q Consensus 31 ikl~~S~~~~-------~Krl~YL~l~~~~~~~~-e~~~L~~Nsl~kDL~s~n~~vr~l---ALr~l~~i~~~el~~~l~ 99 (530)
.+.+..+... .+|+.|+...- +.=+ -++.-+--.+.|=++++|...|=+ ++..++.. .++++ -+.
T Consensus 31 ~r~fn~~~~~~~kc~~~l~kll~l~~~G--~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~ 106 (355)
T 3tjz_B 31 ARVFNETPINPRKCAHILTKILYLINQG--EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVT 106 (355)
T ss_dssp GGGTTSSSCCHHHHHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGH
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHCC--CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHH
Confidence 3567666554 34444554443 1111 112122234567788888866654 45555555 34555 778
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q psy4020 100 SEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQ 179 (530)
Q Consensus 100 ~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~ 179 (530)
..+.+=+.|++||+|-.|+-++.++ ..|++++.+.+.+.+.|.|+||.|-...++-..+ +.+.+|+..+.+.+-+..
T Consensus 107 Nsl~kDl~~~N~~iR~lALRtL~~I--~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~k-L~~~~pe~v~~~~~~l~~ 183 (355)
T 3tjz_B 107 SSLTKDMTGKEDSYRGPAVRALCQI--TDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLH-LLKCSFDVVKRWVNEAQE 183 (355)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHH--CCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHH-HTTTCHHHHHTTHHHHHH
T ss_pred HHHHhhcCCCcHhHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HhccCHHHHHHHHHHHHH
Confidence 8999999999999999999999998 7899999999999999999999996666665554 457778877766666666
Q ss_pred HhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCC---CchhHHHHHHHHHHHhccC-hHHHHHHHHH
Q psy4020 180 VATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNN---DKNIRYVALNTLLRTVYID-TSAVQRHRNT 255 (530)
Q Consensus 180 ~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~---d~niry~aL~~L~~l~~~~-p~~~~~~~~~ 255 (530)
.+.. .++.|++.|+.++.++..... .++..|..-+... ++-.+...++.+.++...+ |..-.+....
T Consensus 184 ll~d------~n~~V~~~Al~lL~ei~~~d~---~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~ 254 (355)
T 3tjz_B 184 AASS------DNIMVQYHALGLLYHVRKNDR---LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDF 254 (355)
T ss_dssp HTTC------SSHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------
T ss_pred HhcC------CCccHHHHHHHHHHHHHhhch---HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 6553 267899999998888765321 2333333333221 3434444455555555555 5544556666
Q ss_pred HhhhccCCcHHHHHHHHHHHHhccChhh--HHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHH
Q psy4020 256 ILECLKDPDVSIRRRALELSFALVNSAN--VRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLV 333 (530)
Q Consensus 256 i~~~l~d~d~~Ir~~aL~ll~~l~n~~N--v~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~ 333 (530)
+..+|++.+..|.-.|...+..+-+-.. ....+.-|..++...|++.|-.+++.|..++.++|..-..|-..+.++++
T Consensus 255 l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~ 334 (355)
T 3tjz_B 255 IESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVT 334 (355)
T ss_dssp --CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC-----------------------
T ss_pred HHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcc
Confidence 7788999999999999999999865211 12234666778888899999999999999999999877778888888888
Q ss_pred H
Q psy4020 334 A 334 (530)
Q Consensus 334 ~ 334 (530)
+
T Consensus 335 d 335 (355)
T 3tjz_B 335 D 335 (355)
T ss_dssp -
T ss_pred C
Confidence 7
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.85 E-value=1.4e-07 Score=90.81 Aligned_cols=209 Identities=17% Similarity=0.146 Sum_probs=152.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHH
Q psy4020 99 ASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAM 173 (530)
Q Consensus 99 ~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l 173 (530)
.+.+.+.|.+.++.+|..|+.++.++....++..+ ..++.+.++|.+.++.+ +...+..|..++..+++..+.+
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v-~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQI-LQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHH-HHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHH-HHHHHHHHHHHhcCCHHHHHHH
Confidence 56777788888888999888888776665443322 46788888888877554 6677778888887666655443
Q ss_pred H-----HHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHH-H-----HHHHHHHHhccCCCchhHHHHHHHHHHHh
Q psy4020 174 N-----DILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR-V-----LAVNILGRFLLNNDKNIRYVALNTLLRTV 242 (530)
Q Consensus 174 ~-----~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~-~-----~~v~~L~~lL~s~d~niry~aL~~L~~l~ 242 (530)
. +.|..++.+ .+..+...|+.++.++...+... . .++..|..+|.+.++.+|..++..|..+.
T Consensus 93 ~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 93 IDAGALPALVQLLSS------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (252)
T ss_dssp HHTTHHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3 334444443 25678999999998887653322 1 35678889998889999999999999999
Q ss_pred ccChHHH-----HHHHHHHhhhccCCcHHHHHHHHHHHHhcc--ChhhHHHHH-----HHHHHHhhhcCchhhhhhHHHH
Q psy4020 243 YIDTSAV-----QRHRNTILECLKDPDVSIRRRALELSFALV--NSANVRSMM-----KELLIFLEKSEPDFKAHCSSNI 310 (530)
Q Consensus 243 ~~~p~~~-----~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~--n~~Nv~~Iv-----~eL~~yl~~~d~~~~~~~i~~I 310 (530)
...+... ......++.++.++|..++..++..|..++ ++++...++ ..|.+.+.+.+.+.++.++.++
T Consensus 167 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L 246 (252)
T 4db8_A 167 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246 (252)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred cCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7665432 223567778899999999999999999997 445555443 4466677777888999998888
Q ss_pred HHHH
Q psy4020 311 VLCA 314 (530)
Q Consensus 311 ~~la 314 (530)
+.++
T Consensus 247 ~~l~ 250 (252)
T 4db8_A 247 EKLQ 250 (252)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 7765
No 33
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.83 E-value=1.6e-07 Score=85.42 Aligned_cols=214 Identities=17% Similarity=0.115 Sum_probs=165.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHH
Q psy4020 96 RDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMND 175 (530)
Q Consensus 96 ~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~ 175 (530)
+.+...+...|.|.-.-|+|+|+.-+..+.+.+|++.+..+.++..+++.+..-=+.-.|-+.|..+....|+.-..+..
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp 110 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIP 110 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHH
Confidence 55677888899999899999999999999999999999999999998876554334446677777777788887666666
Q ss_pred HHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHH
Q psy4020 176 ILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNT 255 (530)
Q Consensus 176 iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~ 255 (530)
++..=..-.+-.--.|.+-++|-+ + ..+|.+...++.-++.++.++|..=|..+|.-+.-+...++..+.++...
T Consensus 111 ~lfanyrigd~kikIn~~yaLeeI---a--ranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLpr 185 (253)
T 2db0_A 111 VLFANYRIGDEKTKINVSYALEEI---A--KANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPR 185 (253)
T ss_dssp HHHHHSCCCSHHHHHHHHHHHHHH---H--HHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHH
T ss_pred HHHHHHhcCCccceecHHHHHHHH---H--HhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHH
Confidence 654321111000001222222222 1 14688888888889999999998899999999999999999999999999
Q ss_pred HhhhccCCcHHHHHHHHHHHHhcc--ChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHH
Q psy4020 256 ILECLKDPDVSIRRRALELSFALV--NSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAE 315 (530)
Q Consensus 256 i~~~l~d~d~~Ir~~aL~ll~~l~--n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~ 315 (530)
++.+|+|.|.-+|.-|.+.|..++ |+. +..++..-++-+.+.......+...+++.++.
T Consensus 186 L~aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 186 IINLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887 555 78888888888887777777777788877653
No 34
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.81 E-value=3.8e-06 Score=92.87 Aligned_cols=285 Identities=14% Similarity=0.067 Sum_probs=202.3
Q ss_pred hHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHH-----HHHHHHHhhcCC-CChhhhhHHHHHHhcCCC-hhhHH---
Q psy4020 27 QLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHL-----LITNSLKNDLNS-STQFVVGLALCTLGAIAS-PEMSR--- 96 (530)
Q Consensus 27 ~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~-----L~~Nsl~kDL~s-~n~~vr~lALr~l~~i~~-~el~~--- 96 (530)
....++++.+++...|.-+-.++..+....+.... -++..+.+-|.+ +++.++..|+++|.++.. ++...
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~ 95 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 95 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH
Confidence 45577899999999999888888888765543211 134556666654 488899999888888764 22221
Q ss_pred --HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH-----HhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhh
Q psy4020 97 --DLASEVERLMKSSNAYIRKKAALCAYRIILKVPELM-----EIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEA 169 (530)
Q Consensus 97 --~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i-----~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~ 169 (530)
..++.+.+++.++++.||+.|+.++.++....++.. ...++.+.++|.+.++.+ +....+.|..++..+++.
T Consensus 96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~-~~~a~~~L~~La~~~~~~ 174 (644)
T 2z6h_A 96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF-LAITTDCLQILAYGNQES 174 (644)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHH-HHHHHHHHHHHHTTCHHH
T ss_pred HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHH-HHHHHHHHHHHHhcCcHH
Confidence 267788899999999999999999999988764432 257899999998877643 445566777777655554
Q ss_pred HHHH-----HHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHH-----HHHHHHHHhccCCCchhHHHHHHHHH
Q psy4020 170 SEAM-----NDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRV-----LAVNILGRFLLNNDKNIRYVALNTLL 239 (530)
Q Consensus 170 ~~~l-----~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~-----~~v~~L~~lL~s~d~niry~aL~~L~ 239 (530)
...+ .+.|..++.+. ....+...|+.++..+...++.+. .++..|..++.+.+..++..++..|.
T Consensus 175 ~~~i~~~g~v~~Lv~lL~~~-----~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~ 249 (644)
T 2z6h_A 175 KLIILASGGPQALVNIMRTY-----TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 249 (644)
T ss_dssp HHHHHHTTHHHHHHHHHTTC-----CCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHcC-----ChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4333 23444455432 134567788888777765443333 24677888888888999999999999
Q ss_pred HHhccChH--HHHHHHHHHhhhccCCcHHHHHHHHHHHHhccCh--hhHHH-----HHHHHHHHhhhcC--chhhhhhHH
Q psy4020 240 RTVYIDTS--AVQRHRNTILECLKDPDVSIRRRALELSFALVNS--ANVRS-----MMKELLIFLEKSE--PDFKAHCSS 308 (530)
Q Consensus 240 ~l~~~~p~--~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~--~Nv~~-----Iv~eL~~yl~~~d--~~~~~~~i~ 308 (530)
.+....+. .+......++.+++++|..++..+...|..++.. +|... .+..|.+.+.+.+ .+.+..++.
T Consensus 250 nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~ 329 (644)
T 2z6h_A 250 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 329 (644)
T ss_dssp HHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHH
Confidence 99865432 2345566777888899999999999999999864 44444 3567777777643 588999999
Q ss_pred HHHHHHHhh
Q psy4020 309 NIVLCAERF 317 (530)
Q Consensus 309 ~I~~la~k~ 317 (530)
+++.++...
T Consensus 330 aL~nL~~~~ 338 (644)
T 2z6h_A 330 ALRHLTSRH 338 (644)
T ss_dssp HHHHHTSSS
T ss_pred HHHHHhcCC
Confidence 999987543
No 35
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.80 E-value=1.4e-07 Score=88.08 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=61.6
Q ss_pred HHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHh
Q psy4020 63 ITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLL 142 (530)
Q Consensus 63 ~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~l 142 (530)
....+.+.|.++++.+|..|++.|+.+..++.+ +.+.+.+.|+++.||..|+.++.++- .| ..++.+.++
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~----~~L~~~l~~~~~~vr~~a~~~L~~~~--~~----~~~~~L~~~ 84 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAV----EPLIKALKDEDAWVRRAAADALGQIG--DE----RAVEPLIKA 84 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGH----HHHHHHTTCSSHHHHHHHHHHHHHHC--CG----GGHHHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChhHH----HHHHHHHcCCCHHHHHHHHHHHHhhC--CH----HHHHHHHHH
Confidence 446777888899999999999999988886554 55556778889999999988887762 33 344555556
Q ss_pred cCCCCCcchHHHHHHHHHhh
Q psy4020 143 LSDKNHAIHQVKILKLLRIL 162 (530)
Q Consensus 143 L~d~n~~V~qi~iL~lL~~l 162 (530)
|.|.++.| +...++.|..+
T Consensus 85 l~d~~~~v-r~~a~~aL~~~ 103 (201)
T 3ltj_A 85 LKDEDGWV-RQSAAVALGQI 103 (201)
T ss_dssp TTCSSHHH-HHHHHHHHHHH
T ss_pred HcCCCHHH-HHHHHHHHHHh
Confidence 66665554 33444444444
No 36
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.79 E-value=1.8e-06 Score=97.74 Aligned_cols=303 Identities=11% Similarity=0.108 Sum_probs=192.6
Q ss_pred HHHhhcCCCCchhHHHHHHHHhhccCCh-hH----HHHHHHHHHhhcCCCChhhhhHHHHHHhcCC--------ChhhHH
Q psy4020 30 CLKLIASSRFTDKRIGYLGAMLLLDERQ-DV----HLLITNSLKNDLNSSTQFVVGLALCTLGAIA--------SPEMSR 96 (530)
Q Consensus 30 vikl~~S~~~~~Krl~YL~l~~~~~~~~-e~----~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~--------~~el~~ 96 (530)
+.+.+.+++...|..+..++..+.+... +. .--++..+.+-+.++++.+|..|+.+++.+. .+...+
T Consensus 374 l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 453 (861)
T 2bpt_A 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLP 453 (861)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHH
T ss_pred HHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHH
Confidence 4456778888899999999998886542 21 2235677888889999999999998888765 245688
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh----h----hHHhhHHHHHHhcCCCC--CcchHHHHHHHHHhhcCCC
Q psy4020 97 DLASEVERLMKSSNAYIRKKAALCAYRIILKVP----E----LMEIFLPATRLLLSDKN--HAIHQVKILKLLRILGKND 166 (530)
Q Consensus 97 ~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p----~----~i~~~i~~l~~lL~d~n--~~V~qi~iL~lL~~l~~~~ 166 (530)
.+.+.+.+.+.+. +.||..|+.++..+.+..+ + .++.+++.+..++.+.+ +.| +...++.+..+....
T Consensus 454 ~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~v-r~~a~~al~~l~~~~ 531 (861)
T 2bpt_A 454 GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNA-RASAFSALTTMVEYA 531 (861)
T ss_dssp HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGH-HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHH-HHHHHHHHHHHHHHc
Confidence 8999999999886 9999999999998887532 3 23456677777887544 444 444555555443222
Q ss_pred hh-h---HHHHHHHHHHHhhcc-cCC----C----CCcchh---HHHHHHHHhc-cCCC-hHHHHHHHHHHHHhccCCCc
Q psy4020 167 VE-A---SEAMNDILAQVATNT-ETS----K----NVGNTI---LYETVLSIMD-IKSE-SGLRVLAVNILGRFLLNNDK 228 (530)
Q Consensus 167 ~~-~---~~~l~~iL~~~l~~~-~~~----~----n~~~aV---~~eai~~i~~-l~~~-~~l~~~~v~~L~~lL~s~d~ 228 (530)
+. . .+.+...+...+... ... + .....+ +++++..++. ++.. ..........+...+.+.++
T Consensus 532 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 611 (861)
T 2bpt_A 532 TDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDS 611 (861)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTG
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCC
Confidence 11 1 122222222222110 000 0 001112 3334333332 1111 12234455566666766666
Q ss_pred -hhHHHHHHHHHHHhccChHHHHH----HHHHHhhhccCCcHHHHHHHHHHHHhccCh--hh----HHHHHHHHHHHhhh
Q psy4020 229 -NIRYVALNTLLRTVYIDTSAVQR----HRNTILECLKDPDVSIRRRALELSFALVNS--AN----VRSMMKELLIFLEK 297 (530)
Q Consensus 229 -niry~aL~~L~~l~~~~p~~~~~----~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~--~N----v~~Iv~eL~~yl~~ 297 (530)
.+|-.++..+..++.....-+.+ ....++.++++++..+|..++.++..++.. +. +..++..+.+.+.+
T Consensus 612 ~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 691 (861)
T 2bpt_A 612 AFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISN 691 (861)
T ss_dssp GGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCC
Confidence 89999988888887654333333 344556667777888999999988766532 22 34555566666665
Q ss_pred c--CchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 298 S--EPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 298 ~--d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
. +.+.|..++.+++.++..+++...-|++.++..+..
T Consensus 692 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~ 730 (861)
T 2bpt_A 692 PNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVA 730 (861)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred ccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4 478999999999999999988877778877776654
No 37
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.77 E-value=1.8e-06 Score=97.70 Aligned_cols=296 Identities=15% Similarity=0.131 Sum_probs=197.7
Q ss_pred HHHHHhh-cCCCCchhHHHHHHHHhhccCC-hhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC---------------
Q psy4020 28 LECLKLI-ASSRFTDKRIGYLGAMLLLDER-QDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA--------------- 90 (530)
Q Consensus 28 ~~vikl~-~S~~~~~Krl~YL~l~~~~~~~-~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~--------------- 90 (530)
.+++..+ .|+|-..|+-+--++..+...+ ++........+.+ .+.++.+|-+|.-.+-+..
T Consensus 7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~--~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~ 84 (861)
T 2bpt_A 7 AQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID--ENTKLEGRILAALTLKNELVSKDSVKTQQFAQRW 84 (861)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC--TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHH
T ss_pred HHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHhhccCcChHHHHHHHHhH
Confidence 3566666 7888889999988888865533 4544444444433 1347889999888888763
Q ss_pred ----ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hh-hHHhhHHHHHHhcCCC-CCcchHHHHHHHHHhhc
Q psy4020 91 ----SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKV-PE-LMEIFLPATRLLLSDK-NHAIHQVKILKLLRILG 163 (530)
Q Consensus 91 ----~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~-p~-~i~~~i~~l~~lL~d~-n~~V~qi~iL~lL~~l~ 163 (530)
.++.-+.+-..+.+.+.+.++.||++++.++..+.+.. |+ .-+++++.+.+.+.+. ++.+.+ ..++++..++
T Consensus 85 ~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~-~al~~l~~l~ 163 (861)
T 2bpt_A 85 ITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKR-ASLLALGYMC 163 (861)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHH-HHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHH
Confidence 33445567777888899999999999999999998864 63 4456788888888877 766522 2234444333
Q ss_pred CC-C------hhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhcc----CC---ChHHHHHHHHHHHHhccCCCch
Q psy4020 164 KN-D------VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDI----KS---ESGLRVLAVNILGRFLLNNDKN 229 (530)
Q Consensus 164 ~~-~------~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l----~~---~~~l~~~~v~~L~~lL~s~d~n 229 (530)
.. . ......+...+...+...+ .+..|...|++++..+ .. .........+.|..++.+.++.
T Consensus 164 ~~~~~~~~~~~~~~~~ll~~l~~~l~~~~----~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 239 (861)
T 2bpt_A 164 ESADPQSQALVSSSNNILIAIVQGAQSTE----TSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE 239 (861)
T ss_dssp HTSSTTSSTTGGGHHHHHHHHHHHHSTTC----CCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHH
T ss_pred HcCChhhhHHHHHHHHHHHHHHHhhcCCC----CCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHH
Confidence 21 1 1233445555555454321 1456888888887543 11 1111234566677777788999
Q ss_pred hHHHHHHHHHHHhccChHHHHHHHH-HHh----hhccCCcHHHHHHHHHHHHhccChh----------------------
Q psy4020 230 IRYVALNTLLRTVYIDTSAVQRHRN-TIL----ECLKDPDVSIRRRALELSFALVNSA---------------------- 282 (530)
Q Consensus 230 iry~aL~~L~~l~~~~p~~~~~~~~-~i~----~~l~d~d~~Ir~~aL~ll~~l~n~~---------------------- 282 (530)
+|-.+++.+..++..+|..+.+|.. .++ .++.|.|..+|..+++.+..++...
T Consensus 240 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (861)
T 2bpt_A 240 VQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL 319 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHH
Confidence 9999999999999888876666655 444 4677889999999999999887642
Q ss_pred -hHHHHHHHHHHHhhhc-------CchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHH
Q psy4020 283 -NVRSMMKELLIFLEKS-------EPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLV 333 (530)
Q Consensus 283 -Nv~~Iv~eL~~yl~~~-------d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~ 333 (530)
.+..++..|+..+.+. +...|..+...++.++..++. ..+..++.++.
T Consensus 320 ~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~ 375 (861)
T 2bpt_A 320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---HILEPVLEFVE 375 (861)
T ss_dssp HHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH---hHHHHHHHHHH
Confidence 2355667777777642 235788888999999988863 23444555443
No 38
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.75 E-value=4.4e-07 Score=87.38 Aligned_cols=213 Identities=18% Similarity=0.130 Sum_probs=122.2
Q ss_pred CCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhHH--HH---HHHHHHhhcCCCChhhhhHHHHHHhcCCC--hhhHH
Q psy4020 24 HFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVH--LL---ITNSLKNDLNSSTQFVVGLALCTLGAIAS--PEMSR 96 (530)
Q Consensus 24 sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~--~L---~~Nsl~kDL~s~n~~vr~lALr~l~~i~~--~el~~ 96 (530)
.+.+.+.++++.|++.+.++-+--++..++..+++.. +. ++..+.+-|.++++.+|..|+.+|+++.. ++..+
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3445666666666666666666555533332222111 01 23344444445555555555555555442 23222
Q ss_pred H-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHH
Q psy4020 97 D-----LASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASE 171 (530)
Q Consensus 97 ~-----l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~ 171 (530)
. ..+.+.+++.++++.||+.|+.++..+ +..++...+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l--------------------------------------~~~~~~~~~ 132 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNI--------------------------------------ASGGNEQIQ 132 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH--------------------------------------TTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh--------------------------------------hcCCchHHH
Confidence 1 344444555555555555555555444 333222111
Q ss_pred H-----HHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC-ChHHHH-----HHHHHHHHhccCCCchhHHHHHHHHHH
Q psy4020 172 A-----MNDILAQVATNTETSKNVGNTILYETVLSIMDIKS-ESGLRV-----LAVNILGRFLLNNDKNIRYVALNTLLR 240 (530)
Q Consensus 172 ~-----l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~-~~~l~~-----~~v~~L~~lL~s~d~niry~aL~~L~~ 240 (530)
. ..+.|..++.+. +..|..+|+.++.++.. +++... .++..|..+|.++++.+|..++..|..
T Consensus 133 ~~~~~~~i~~L~~lL~~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 206 (252)
T 4db8_A 133 AVIDAGALPALVQLLSSP------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 206 (252)
T ss_dssp HHHHTTHHHHHHHGGGCS------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 1 223333444321 45688888888887765 232222 346778889988899999999999999
Q ss_pred HhccChHHHH-----HHHHHHhhhccCCcHHHHHHHHHHHHhccC
Q psy4020 241 TVYIDTSAVQ-----RHRNTILECLKDPDVSIRRRALELSFALVN 280 (530)
Q Consensus 241 l~~~~p~~~~-----~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n 280 (530)
++..++...+ .-...+..++.++|..+|+.|...|.+++.
T Consensus 207 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 207 IASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 9876665322 134567778889999999999999998874
No 39
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.68 E-value=7.3e-07 Score=83.74 Aligned_cols=187 Identities=16% Similarity=0.082 Sum_probs=135.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHH
Q psy4020 99 ASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILA 178 (530)
Q Consensus 99 ~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~ 178 (530)
.+.+.+.|.|+++.||..|+.++.++.. | ..++.+.++|.|.|+.| ....++.|..++. ++.. +.|.
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~--~----~~~~~L~~~l~~~~~~v-r~~a~~aL~~~~~--~~~~----~~L~ 87 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD--E----RAVEPLIKALKDEDAWV-RRAAADALGQIGD--ERAV----EPLI 87 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----GGHHHHHHHTTCSCHHH-HHHHHHHHHHHCC--GGGH----HHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC--c----cHHHHHHHHHcCCCHHH-HHHHHHHHHhhCC--HHHH----HHHH
Confidence 4556667899999999999999987632 2 45667778888887766 5556677776653 3333 3333
Q ss_pred HHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhh
Q psy4020 179 QVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILE 258 (530)
Q Consensus 179 ~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~ 258 (530)
..+.. .+..|...|+.++..+.... ++..|..+|.+.++.+|..++..|..+.. +.. ...+..
T Consensus 88 ~~l~~------~~~~vr~~a~~aL~~~~~~~-----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~~~----~~~L~~ 150 (211)
T 3ltm_A 88 KALKD------EDGWVRQSAAVALGQIGDER-----AVEPLIKALKDEDWFVRIAAAFALGEIGD--ERA----VEPLIK 150 (211)
T ss_dssp HHTTC------SSHHHHHHHHHHHHHHCCGG-----GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--GGG----HHHHHH
T ss_pred HHHcC------CCHHHHHHHHHHHHHhCcHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHcCC--HHH----HHHHHH
Confidence 34442 26679999999998876542 45677788888999999999999999843 333 344566
Q ss_pred hccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCC
Q psy4020 259 CLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAP 319 (530)
Q Consensus 259 ~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~ 319 (530)
+++|+|..+|..+++.|..+..+ ..+..|.+.+.+.+.++|..++.+++.+..++.+
T Consensus 151 ~l~d~~~~vr~~a~~aL~~~~~~----~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 151 ALKDEDGWVRQSAADALGEIGGE----RVRAAMEKLAETGTGFARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCSH----HHHHHHHHHHHHCCHHHHHHHHHHHHC-------
T ss_pred HHcCCCHHHHHHHHHHHHHhCch----hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Confidence 78999999999999999999874 4556677777788899999999999988876643
No 40
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.67 E-value=1.5e-06 Score=90.72 Aligned_cols=296 Identities=11% Similarity=0.084 Sum_probs=196.1
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHhhccC-ChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC----------------
Q psy4020 28 LECLKLIASSRFTDKRIGYLGAMLLLDE-RQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA---------------- 90 (530)
Q Consensus 28 ~~vikl~~S~~~~~Krl~YL~l~~~~~~-~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~---------------- 90 (530)
.+++..+.|+|-..|+.+--.+..+... .++........+.. .+.++.+|-.|.-.|.+..
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 4567777788888888888777776543 34444333444442 2346788888876666542
Q ss_pred --ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hh-hHHhhHHHHHHhcCCC--CCcchHHHHHHHHHhhcC
Q psy4020 91 --SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKV-PE-LMEIFLPATRLLLSDK--NHAIHQVKILKLLRILGK 164 (530)
Q Consensus 91 --~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~-p~-~i~~~i~~l~~lL~d~--n~~V~qi~iL~lL~~l~~ 164 (530)
.++.-+.+-..+.+.+.+.++.| ++++.++..+.+.. |+ .-+++++.+.+.+.+. ++.+ +-..++.|..++.
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~-r~~al~~l~~l~~ 159 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHM-KESTLEAIGYICQ 159 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHH-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHH-HHHHHHHHHHHHH
Confidence 34555667777888899999999 99999999998863 53 3456777788888776 6654 2233444444432
Q ss_pred C-----ChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC-------ChHHHHHHHHHHHHhccCCCchhHH
Q psy4020 165 N-----DVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKS-------ESGLRVLAVNILGRFLLNNDKNIRY 232 (530)
Q Consensus 165 ~-----~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~-------~~~l~~~~v~~L~~lL~s~d~niry 232 (530)
. -....+.+...+...+...+ .+..|..+|++++..+-. .......+...+...+.+.++.+|-
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~ 235 (462)
T 1ibr_B 160 DIDPEQLQDKSNEILTAIIQGMRKEE----PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRV 235 (462)
T ss_dssp HSCGGGTGGGHHHHHHHHHHHHSTTC----CCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred hCCchhhHhHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 1 11223445555555554321 145788889888765311 1112233456666777788999999
Q ss_pred HHHHHHHHHhccChHHHHHHHH-----HHhhhccCCcHHHHHHHHHHHHhccChh-------------------------
Q psy4020 233 VALNTLLRTVYIDTSAVQRHRN-----TILECLKDPDVSIRRRALELSFALVNSA------------------------- 282 (530)
Q Consensus 233 ~aL~~L~~l~~~~p~~~~~~~~-----~i~~~l~d~d~~Ir~~aL~ll~~l~n~~------------------------- 282 (530)
.+++.+..++..+|+.+.+|.. .++.++.+.+..+|..+++.+..++...
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (462)
T 1ibr_B 236 AALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA 315 (462)
T ss_dssp HHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHH
Confidence 9999999999888765544433 3345667888999999999998887643
Q ss_pred --hHHHHHHHHHHHhhhc-------CchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 283 --NVRSMMKELLIFLEKS-------EPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 283 --Nv~~Iv~eL~~yl~~~-------d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
.+..++..+++.+.+. +...|..+...++.++..++. +++..++.++..
T Consensus 316 ~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~ 373 (462)
T 1ibr_B 316 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKE 373 (462)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHH
T ss_pred HHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHH
Confidence 1356667777777543 235788889999999999873 677777776664
No 41
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.67 E-value=7.6e-06 Score=87.30 Aligned_cols=286 Identities=13% Similarity=0.069 Sum_probs=197.4
Q ss_pred hHHHHHhhcCCCCchhHHHHHHHHhhccCChhH-HH----HHHHHHHhhcC-CCChhhhhHHHHHHhcCCCh-hhHH---
Q psy4020 27 QLECLKLIASSRFTDKRIGYLGAMLLLDERQDV-HL----LITNSLKNDLN-SSTQFVVGLALCTLGAIASP-EMSR--- 96 (530)
Q Consensus 27 ~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~-~~----L~~Nsl~kDL~-s~n~~vr~lALr~l~~i~~~-el~~--- 96 (530)
....++++.+++...|.-+-.++..+...++.. .+ =++..+.+-|. ++++.++-.|+++|.++... +...
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 98 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 98 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHH
Confidence 455778999998888888877777776544321 11 13445555554 35888999999999987642 2221
Q ss_pred --HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH-----HhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhh
Q psy4020 97 --DLASEVERLMKSSNAYIRKKAALCAYRIILKVPELM-----EIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEA 169 (530)
Q Consensus 97 --~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i-----~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~ 169 (530)
...+.+.+++.++++-+|..|+-++.++....++.. ...++.+.+++.+.+..+ +......|..++..+++.
T Consensus 99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~-~~~~~~~L~~la~~~~~~ 177 (529)
T 1jdh_A 99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF-LAITTDCLQILAYGNQES 177 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHH-HHHHHHHHHHHHTTCHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHH-HHHHHHHHHHHHhCCHHH
Confidence 267788899999999999999999999988765432 357889999999877655 334455666666655554
Q ss_pred HHHHH-----HHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHH-----HHHHHHHHhccCCCchhHHHHHHHHH
Q psy4020 170 SEAMN-----DILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRV-----LAVNILGRFLLNNDKNIRYVALNTLL 239 (530)
Q Consensus 170 ~~~l~-----~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~-----~~v~~L~~lL~s~d~niry~aL~~L~ 239 (530)
...+. +.+..++... ....+...+..++.++...++... .++..|..++.+.++.++.-++..|.
T Consensus 178 ~~~i~~~~~i~~L~~ll~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~ 252 (529)
T 1jdh_A 178 KLIILASGGPQALVNIMRTY-----TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhC-----ChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHH
Confidence 33322 2333444432 134466667777776665443322 35677888888888999999999999
Q ss_pred HHhccChH--HHHHHHHHHhhhccCCcHHHHHHHHHHHHhccCh--hhHHHH-----HHHHHHHhhhc--CchhhhhhHH
Q psy4020 240 RTVYIDTS--AVQRHRNTILECLKDPDVSIRRRALELSFALVNS--ANVRSM-----MKELLIFLEKS--EPDFKAHCSS 308 (530)
Q Consensus 240 ~l~~~~p~--~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~--~Nv~~I-----v~eL~~yl~~~--d~~~~~~~i~ 308 (530)
.+....+. ........+..++.++|..++..+...+..++.. ++...+ +..|.+.+... +.+.+..++.
T Consensus 253 ~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~ 332 (529)
T 1jdh_A 253 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 332 (529)
T ss_dssp HHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHH
Confidence 98865432 2345566777888999999999999999999874 455443 45667777653 3678899999
Q ss_pred HHHHHHHhhC
Q psy4020 309 NIVLCAERFA 318 (530)
Q Consensus 309 ~I~~la~k~~ 318 (530)
+++.++...+
T Consensus 333 ~L~nl~~~~~ 342 (529)
T 1jdh_A 333 ALRHLTSRHQ 342 (529)
T ss_dssp HHHHHTSSST
T ss_pred HHHHHHcCCc
Confidence 9998875433
No 42
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.66 E-value=1.3e-05 Score=90.93 Aligned_cols=295 Identities=15% Similarity=0.131 Sum_probs=187.0
Q ss_pred CCCCchhHHHHHHHHhhccCCh-hHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCC---hh----hHHHHHHHHHHHhc
Q psy4020 36 SSRFTDKRIGYLGAMLLLDERQ-DVHLLITNSLKNDLNSSTQFVVGLALCTLGAIAS---PE----MSRDLASEVERLMK 107 (530)
Q Consensus 36 S~~~~~Krl~YL~l~~~~~~~~-e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~---~e----l~~~l~~~V~~~l~ 107 (530)
+.+...|+.+.-++..+...-+ +..-.+.+.+..-++++++.+|..|+.+++.+.. ++ ..+.+.+.+.+.+.
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~ 418 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK 418 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3467778777666666554322 3444566778888889999999999999999875 23 34667888999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhCh------hhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCC----------------
Q psy4020 108 SSNAYIRKKAALCAYRIILKVP------ELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKN---------------- 165 (530)
Q Consensus 108 ~~~~yVRK~A~la~~ki~~~~p------~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~---------------- 165 (530)
|+++.||..|+.++.++....+ +.++..++.+...+.|. +.| +......|..++..
T Consensus 419 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v-~~~a~~al~~l~~~~~~~~~~~~~~~~~~~ 496 (876)
T 1qgr_A 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRV-ASNVCWAFSSLAEAAYEAADVADDQEEPAT 496 (876)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHH-HHHHHHHHHHHHHHHHHTTSCTTSCCCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHH-HHHHHHHHHHHHHHhhhccccccccccccc
Confidence 9999999999999999998754 45667888888888874 554 44444444443311
Q ss_pred ---ChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCC--hHHHHHHHHHHHHhcc-----------CCC--
Q psy4020 166 ---DVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSE--SGLRVLAVNILGRFLL-----------NND-- 227 (530)
Q Consensus 166 ---~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~--~~l~~~~v~~L~~lL~-----------s~d-- 227 (530)
.| ..+.+...|...+...+.....-...+++|+..+...... ..........+...+. +.|
T Consensus 497 ~~l~~-~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~ 575 (876)
T 1qgr_A 497 YCLSS-SFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRI 575 (876)
T ss_dssp CSSTT-THHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHH
T ss_pred hhhhH-hHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHH
Confidence 12 2344555555555432110000113467777776654322 2222233333322221 222
Q ss_pred --chhHHHHHHHHHHHhccCh-HHHHHHHH----HHhhhccCCc--HHHHHHHHHHHHhccCh------hhHHHHHHHHH
Q psy4020 228 --KNIRYVALNTLLRTVYIDT-SAVQRHRN----TILECLKDPD--VSIRRRALELSFALVNS------ANVRSMMKELL 292 (530)
Q Consensus 228 --~niry~aL~~L~~l~~~~p-~~~~~~~~----~i~~~l~d~d--~~Ir~~aL~ll~~l~n~------~Nv~~Iv~eL~ 292 (530)
+++|-.++..+..++...+ ..+.+|.. .++.++++.. ..++..++..+..++.. .-+..++..|.
T Consensus 576 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~ 655 (876)
T 1qgr_A 576 QFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLG 655 (876)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5567788888888887665 55555544 3445566553 47899999998887752 23567777888
Q ss_pred HHhhhc-CchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHH
Q psy4020 293 IFLEKS-EPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLV 333 (530)
Q Consensus 293 ~yl~~~-d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~ 333 (530)
..+.+. +.+.|..++..++.++....+...-+++.++..+.
T Consensus 656 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~ 697 (876)
T 1qgr_A 656 IGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLL 697 (876)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 888776 77899999999999988766544444555555444
No 43
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.65 E-value=1.6e-06 Score=80.63 Aligned_cols=185 Identities=16% Similarity=0.098 Sum_probs=137.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHH
Q psy4020 96 RDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMND 175 (530)
Q Consensus 96 ~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~ 175 (530)
+...+.+.+.|.|+++.||..|+.++.++.. + ..++.+.++|.|.|+.| ....++.|..++. ++...
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--~----~~~~~L~~~l~~~~~~v-r~~a~~~L~~~~~--~~~~~---- 79 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--E----RAVEPLIKALKDEDAWV-RRAAADALGQIGD--ERAVE---- 79 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G----GGHHHHHHHTTCSSHHH-HHHHHHHHHHHCC--GGGHH----
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--h----hHHHHHHHHHcCCCHHH-HHHHHHHHHhhCC--HHHHH----
Confidence 4667888899999999999999999987632 2 45667778888888776 4455666666653 33333
Q ss_pred HHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHH
Q psy4020 176 ILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNT 255 (530)
Q Consensus 176 iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~ 255 (530)
.|...+.. .+..|...|+.++..+.... ++..|..+|.+.++.+|..++..|..+.. +.. ...
T Consensus 80 ~L~~~l~d------~~~~vr~~a~~aL~~~~~~~-----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~~~----~~~ 142 (201)
T 3ltj_A 80 PLIKALKD------EDGWVRQSAAVALGQIGDER-----AVEPLIKALKDEDWFVRIAAAFALGEIGD--ERA----VEP 142 (201)
T ss_dssp HHHHHTTC------SSHHHHHHHHHHHHHHCCGG-----GHHHHHHHTTCSSHHHHHHHHHHHHHHTC--GGG----HHH
T ss_pred HHHHHHcC------CCHHHHHHHHHHHHHhCcHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--HHH----HHH
Confidence 33334442 26779999999998876542 45567778888999999999999998853 333 344
Q ss_pred HhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHH
Q psy4020 256 ILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCA 314 (530)
Q Consensus 256 i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la 314 (530)
+..++.|+|..+|..++..|..+.+++ .+..|.+.+.+.+...|..++.+++.+.
T Consensus 143 L~~~l~d~~~~vr~~A~~aL~~~~~~~----~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 143 LIKALKDEDGWVRQSAADALGEIGGER----VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCSHH----HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCchh----HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 667788999999999999999997754 5556677777888889999888887654
No 44
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.64 E-value=7.9e-06 Score=91.95 Aligned_cols=279 Identities=15% Similarity=0.072 Sum_probs=201.0
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHhhccCChhHHH----HHHHHHHhhcCCCChhhhhHHHHHHhcCCC--------hhh-
Q psy4020 28 LECLKLIASSRFTDKRIGYLGAMLLLDERQDVHL----LITNSLKNDLNSSTQFVVGLALCTLGAIAS--------PEM- 94 (530)
Q Consensus 28 ~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~----L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~--------~el- 94 (530)
...+++++|++...++-++-++...... ++..- .-+..|.+=+.+.++.+|..|+-.||++.. +.+
T Consensus 293 ~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~ 371 (810)
T 3now_A 293 QMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFG 371 (810)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSST
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchh
Confidence 3477899999999999998888886654 43221 224666677788899999999999999862 222
Q ss_pred ---HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChh----hH--HhhHHHHHHhcCCCCCcchHHHHHHHHHhhc
Q psy4020 95 ---SRDLASEVERLMKSS--NAYIRKKAALCAYRIILKVPE----LM--EIFLPATRLLLSDKNHAIHQVKILKLLRILG 163 (530)
Q Consensus 95 ---~~~l~~~V~~~l~~~--~~yVRK~A~la~~ki~~~~p~----~i--~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~ 163 (530)
.+.+.+.+.++|.++ ++-+|+.|+-|++.+-. +|+ ++ ..+++.+.++|...++.+ |...+..|..+.
T Consensus 372 ~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i-~~~al~~L~NLt 449 (810)
T 3now_A 372 DGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSC-LYGVVTTFVNLC 449 (810)
T ss_dssp TTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGG-HHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHH-HHHHHHHHHHHc
Confidence 467888999999998 89999999999998865 333 33 258899999998877654 777788888776
Q ss_pred CCCh------------------------h-----hH---HH-----HHHHHHHHhhcccCCCCCcchhHHHHHHHHhccC
Q psy4020 164 KNDV------------------------E-----AS---EA-----MNDILAQVATNTETSKNVGNTILYETVLSIMDIK 206 (530)
Q Consensus 164 ~~~~------------------------~-----~~---~~-----l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~ 206 (530)
...+ . .. +. ....|.+++.+ .++.+.-+|++++.++.
T Consensus 450 ~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s------~s~~vqe~Aa~aL~NLA 523 (810)
T 3now_A 450 NAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT------ESHNSQELIARVLNAVC 523 (810)
T ss_dssp TCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC------CCHHHHHHHHHHHHHHH
T ss_pred CCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC------CCHHHHHHHHHHHHHHc
Confidence 5321 0 01 11 12234444443 25789999999999997
Q ss_pred CChHHHHH-----HHHHHHHhccCCCchhHHHHHHHHHHHhc-cChHHH------HHHHHHHhhhccCC-cHHHHHHHHH
Q psy4020 207 SESGLRVL-----AVNILGRFLLNNDKNIRYVALNTLLRTVY-IDTSAV------QRHRNTILECLKDP-DVSIRRRALE 273 (530)
Q Consensus 207 ~~~~l~~~-----~v~~L~~lL~s~d~niry~aL~~L~~l~~-~~p~~~------~~~~~~i~~~l~d~-d~~Ir~~aL~ 273 (530)
.+++.+.. ++..|..+|.++++..|..+...|..+.. .+|... ..-...+..+|.++ +...+..|+.
T Consensus 524 ~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~ 603 (810)
T 3now_A 524 GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLM 603 (810)
T ss_dssp TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHH
Confidence 76554443 45678889988899999999999999875 356542 22345566677644 4445668999
Q ss_pred HHHhccC--hhhHHHHH-----HHHHHHhhhcCchhhhhhHHHHHHHHH
Q psy4020 274 LSFALVN--SANVRSMM-----KELLIFLEKSEPDFKAHCSSNIVLCAE 315 (530)
Q Consensus 274 ll~~l~n--~~Nv~~Iv-----~eL~~yl~~~d~~~~~~~i~~I~~la~ 315 (530)
-|.+|+. +++...|+ ..|.+++...+...++.++..|+.++.
T Consensus 604 AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 604 ALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 9999986 45666665 457778877788899999999999874
No 45
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.64 E-value=4.1e-07 Score=86.01 Aligned_cols=193 Identities=15% Similarity=0.141 Sum_probs=148.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh-----hHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCC---Ch
Q psy4020 96 RDLASEVERLMKSSNAYIRKKAALCAYRIILKVPE-----LMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKN---DV 167 (530)
Q Consensus 96 ~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~-----~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~---~~ 167 (530)
+.....+..++.+.++.|+-+|..++-++.+..|+ .++++++.+..++.+.|..| .++.+++++.+... ++
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkv-al~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKV-TIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHH-HHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhH-HHHHHHHHHHHHcCCCCCH
Confidence 45677888999999999999999999999998665 44689999999999999887 45667777766544 44
Q ss_pred hhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhcc--C
Q psy4020 168 EASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYI--D 245 (530)
Q Consensus 168 ~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~--~ 245 (530)
+....+.+.+..++++. +..+..|++-.+-.+... .......+.+.+++.|+|+.+|-+|++.+..++.. +
T Consensus 111 ~~y~Kl~~aL~dlik~~------~~il~~eaae~Lgklkv~-~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 111 KTFLKAAKTLVSLLESP------DDMMRIETIDVLSKLQPL-EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHHHHHHHHHHHHTTSC------CHHHHHHHHHHHHHCCBS-CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHHHHHHHHHHHHhcCC------CchHHHHHHHHhCcCCcc-cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 54455555555555532 677889999887666422 12345778888999999999999999999999864 5
Q ss_pred hHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhh
Q psy4020 246 TSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLE 296 (530)
Q Consensus 246 p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~ 296 (530)
|+.+..-...+-++|+++|++++.+||+.+..+.+..=.+.++.++..-++
T Consensus 184 ~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~ 234 (265)
T 3b2a_A 184 SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISR 234 (265)
T ss_dssp CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHH
Confidence 677776667777889999999999999999999887655555555555444
No 46
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.60 E-value=5e-07 Score=102.39 Aligned_cols=263 Identities=13% Similarity=0.154 Sum_probs=169.9
Q ss_pred HHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhh---H--HhhHHH
Q psy4020 64 TNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPEL---M--EIFLPA 138 (530)
Q Consensus 64 ~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~---i--~~~i~~ 138 (530)
+..+.++|.++++.+|..|++.++.+...++....++.+.++|.+.++.||.+|+.++.++....+.. + ...++.
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 46788899999999999999999887777788889999999999999999999999999998753321 1 246777
Q ss_pred HHHhcCCC-CCcchHHHHHHHHHhhcCCChhhHHHH-----HHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCC-hH-
Q psy4020 139 TRLLLSDK-NHAIHQVKILKLLRILGKNDVEASEAM-----NDILAQVATNTETSKNVGNTILYETVLSIMDIKSE-SG- 210 (530)
Q Consensus 139 l~~lL~d~-n~~V~qi~iL~lL~~l~~~~~~~~~~l-----~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~-~~- 210 (530)
+.++|.+. ++.+ +....+.|..+...+ +....+ +..|..++.+. +..|.++|+.++.++... +.
T Consensus 197 Lv~~L~~~~d~~v-r~~Aa~aL~~Ls~~~-~~~~~i~~~g~I~~Lv~lL~~~------~~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 197 IVRTMQNTNDVET-ARCTSGTLHNLSHHR-EGLLAIFKSGGIPALVNMLGSP------VDSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHCCCHHH-HHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHcCCCCHHH-HHHHHHHHHHHhCCc-hhHHHHHHcCCHHHHHHHHcCC------CHHHHHHHHHHHHHHhCCChhh
Confidence 77777654 4444 556666666665542 222222 23444444432 567999999998877421 11
Q ss_pred ---HH-HHHHHHHHHhccCCCchhHHHHHHHHHHHhccChH---------------------------------------
Q psy4020 211 ---LR-VLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTS--------------------------------------- 247 (530)
Q Consensus 211 ---l~-~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~--------------------------------------- 247 (530)
+. ..++..|..+|.+++..++..++..|..+...+++
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 11 24566788888777777777776666555432211
Q ss_pred -------HHH-HHHHHHhhhccCCcHHHHHHHHHHHHhccChh----hHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHH
Q psy4020 248 -------AVQ-RHRNTILECLKDPDVSIRRRALELSFALVNSA----NVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAE 315 (530)
Q Consensus 248 -------~~~-~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~----Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~ 315 (530)
+++ .-...++.++.+.+..+++.++..+..++... ....++..|.+.+...+.+.+..++.+++.++.
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~ 428 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 428 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 000 01244556677778888888888888887432 356778888888888888899999888888865
Q ss_pred hhCCCc-----hhHHHHHHHHHHH
Q psy4020 316 RFAPNK-----RWHLDTLLKVLVA 334 (530)
Q Consensus 316 k~~~~~-----~~~vd~Ll~lL~~ 334 (530)
..+... .-.+..|+++|..
T Consensus 429 ~~~~~~~~i~~~g~i~~Lv~lL~~ 452 (780)
T 2z6g_A 429 NNYKNKMMVCQVGGIEALVRTVLR 452 (780)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHc
Confidence 321100 1245667766654
No 47
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.59 E-value=7.5e-06 Score=92.69 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=77.4
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHhccChH--HHHHHHHHHhhhccCCcHHHHHHHHHHHHhccCh--hhHHH----
Q psy4020 215 AVNILGRFLLNNDKNIRYVALNTLLRTVYIDTS--AVQRHRNTILECLKDPDVSIRRRALELSFALVNS--ANVRS---- 286 (530)
Q Consensus 215 ~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~--~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~--~Nv~~---- 286 (530)
++..|..+|.+.++.++.-++..|..+....+. ........++.+++++|..+|..+...|..|+.. ++...
T Consensus 361 ~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~ 440 (780)
T 2z6g_A 361 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 440 (780)
T ss_dssp HHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 457788888888888999999999999865432 2344556677788899999999999999999874 34433
Q ss_pred -HHHHHHHHhhhc-Cc-hhhhhhHHHHHHHHHhh
Q psy4020 287 -MMKELLIFLEKS-EP-DFKAHCSSNIVLCAERF 317 (530)
Q Consensus 287 -Iv~eL~~yl~~~-d~-~~~~~~i~~I~~la~k~ 317 (530)
.+..|.+.+.+. +. +.+..++.+++.++...
T Consensus 441 g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~ 474 (780)
T 2z6g_A 441 GGIEALVRTVLRAGDREDITEPAICALRHLTSRH 474 (780)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSS
T ss_pred CCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 356777777653 33 78999999999887544
No 48
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.55 E-value=1.8e-05 Score=89.65 Aligned_cols=289 Identities=13% Similarity=0.082 Sum_probs=185.6
Q ss_pred hHHHHHhhcCC--CCchhHHHHHHHHhhccC-Ch----hHHHHHHHHHHhhcCCC--ChhhhhHHHHHHhcCCC---hhh
Q psy4020 27 QLECLKLIASS--RFTDKRIGYLGAMLLLDE-RQ----DVHLLITNSLKNDLNSS--TQFVVGLALCTLGAIAS---PEM 94 (530)
Q Consensus 27 ~~~vikl~~S~--~~~~Krl~YL~l~~~~~~-~~----e~~~L~~Nsl~kDL~s~--n~~vr~lALr~l~~i~~---~el 94 (530)
...+++++.++ +...|+.+...+..+.+. .+ +..-.+...+.+-+.++ ++.+|..|+++++.+.. +.+
T Consensus 130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~ 209 (876)
T 1qgr_A 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209 (876)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777887 777777776666655542 12 12233445566666665 78999999999987542 111
Q ss_pred -----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCCCCCcchHHHHHHHHHhhcC
Q psy4020 95 -----SRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSDKNHAIHQVKILKLLRILGK 164 (530)
Q Consensus 95 -----~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~ 164 (530)
.+.+.+.+.+.+.+.++.||+.|+-|+..+...+|+.+. .+++.+...+.+.+..|. ...++++..++.
T Consensus 210 ~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~-~~al~~l~~l~~ 288 (876)
T 1qgr_A 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVA-LQGIEFWSNVCD 288 (876)
T ss_dssp TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHH-HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHH-HHHHHHHHHHHH
Confidence 134677778888889999999999999999998887543 455555566667666662 223333333321
Q ss_pred CC---------------------hh-hH---HHHHHHHHHHhhcccCC-CCCcchhHHHHHHHHhccCC--ChHHHHHHH
Q psy4020 165 ND---------------------VE-AS---EAMNDILAQVATNTETS-KNVGNTILYETVLSIMDIKS--ESGLRVLAV 216 (530)
Q Consensus 165 ~~---------------------~~-~~---~~l~~iL~~~l~~~~~~-~n~~~aV~~eai~~i~~l~~--~~~l~~~~v 216 (530)
.. .. .. +.+...+.+.+...+.. ...+..+...|..++..+.. .......+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l 368 (876)
T 1qgr_A 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVL 368 (876)
T ss_dssp HHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHH
Confidence 10 00 11 22222232333221100 01134455555555543321 123344556
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHhccC-hHHHHHH----HHHHhhhccCCcHHHHHHHHHHHHhccC--------hhh
Q psy4020 217 NILGRFLLNNDKNIRYVALNTLLRTVYID-TSAVQRH----RNTILECLKDPDVSIRRRALELSFALVN--------SAN 283 (530)
Q Consensus 217 ~~L~~lL~s~d~niry~aL~~L~~l~~~~-p~~~~~~----~~~i~~~l~d~d~~Ir~~aL~ll~~l~n--------~~N 283 (530)
..+...+.+.++.+|+.++..+..++... |+.+.+| ...++.+++|++..+|..++..+..++. +..
T Consensus 369 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (876)
T 1qgr_A 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (876)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence 66777777889999999999999998754 3544444 4455667889999999999999998774 367
Q ss_pred HHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhh
Q psy4020 284 VRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERF 317 (530)
Q Consensus 284 v~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~ 317 (530)
...++..|...+.+ +..++..++.+++.++..+
T Consensus 449 l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 449 LAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp HHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHh
Confidence 88899999988876 4778889999999988764
No 49
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.55 E-value=8e-06 Score=76.18 Aligned_cols=177 Identities=19% Similarity=0.115 Sum_probs=127.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHH
Q psy4020 97 DLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASE 171 (530)
Q Consensus 97 ~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~ 171 (530)
...+.+.+++.++++.+|..|+.++..+....++... ..++.+.++|.+.++.+ +...+..|..++..+++..+
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v-~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI-LQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHH-HHHHHHHHHHHTTSCHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHH-HHHHHHHHHHHhcCCcHHHH
Confidence 4556777888888899999998888888876665443 46778888888877665 55667778877766665544
Q ss_pred HHH-----HHHHHHhhcccCCCCCcchhHHHHHHHHhccCC-ChHHH-----HHHHHHHHHhccCCCchhHHHHHHHHHH
Q psy4020 172 AMN-----DILAQVATNTETSKNVGNTILYETVLSIMDIKS-ESGLR-----VLAVNILGRFLLNNDKNIRYVALNTLLR 240 (530)
Q Consensus 172 ~l~-----~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~-~~~l~-----~~~v~~L~~lL~s~d~niry~aL~~L~~ 240 (530)
.+. +.|..++.+. +..+..+|+.++.++.. +++.. ..++..|..+|.++++++|..++..|..
T Consensus 91 ~i~~~g~i~~L~~lL~~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSP------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (210)
T ss_dssp HHHHTTCHHHHHHHTTCS------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCC------cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 433 3444444432 56788999999888864 33222 1356778888888899999999999999
Q ss_pred HhccChHHH----H-HHHHHHhhhccCCcHHHHHHHHHHHHhccC
Q psy4020 241 TVYIDTSAV----Q-RHRNTILECLKDPDVSIRRRALELSFALVN 280 (530)
Q Consensus 241 l~~~~p~~~----~-~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n 280 (530)
++...++.. + .....+..++.+++..+|+.|+..|..++.
T Consensus 165 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 165 IASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 987655432 1 234567778888899999999999988875
No 50
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.50 E-value=3.6e-05 Score=82.62 Aligned_cols=281 Identities=13% Similarity=0.089 Sum_probs=195.1
Q ss_pred HHHHHhhcCCC-CchhHHHHHHHHhhccCChhHHHH-----HHHHHHhhcCCCChhhhhHHHHHHhcCCC--hhhHHH--
Q psy4020 28 LECLKLIASSR-FTDKRIGYLGAMLLLDERQDVHLL-----ITNSLKNDLNSSTQFVVGLALCTLGAIAS--PEMSRD-- 97 (530)
Q Consensus 28 ~~vikl~~S~~-~~~Krl~YL~l~~~~~~~~e~~~L-----~~Nsl~kDL~s~n~~vr~lALr~l~~i~~--~el~~~-- 97 (530)
+-.++++.+++ ...+.-+--++..++..+++.... ++..|.+-|.++++.+|-.|+.+|++|.. ++.-..
T Consensus 103 p~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~ 182 (510)
T 3ul1_B 103 PKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVI 182 (510)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44667786554 566766666777777666654322 46678888999999999999999999963 443333
Q ss_pred ---HHHHHHHHhcCCC-----HHHHHHHHHHHHHHHhhC---h--hhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcC
Q psy4020 98 ---LASEVERLMKSSN-----AYIRKKAALCAYRIILKV---P--ELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGK 164 (530)
Q Consensus 98 ---l~~~V~~~l~~~~-----~yVRK~A~la~~ki~~~~---p--~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~ 164 (530)
..+.+..++.+.+ ..+.+.|+.++..+.+.. + ..+...++.+..+|.+.++.| +......|..++.
T Consensus 183 ~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v-~~~A~~aL~~L~~ 261 (510)
T 3ul1_B 183 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV-LADSCWAISYLTD 261 (510)
T ss_dssp HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHHTS
T ss_pred HcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHH-HHHHHHHHHHHhh
Confidence 3567888887653 456788888888887643 1 234578999999999988876 4456677777776
Q ss_pred CChhhHHHH-----HHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC-ChHHHHH-----HHHHHHHhccCCCchhHHH
Q psy4020 165 NDVEASEAM-----NDILAQVATNTETSKNVGNTILYETVLSIMDIKS-ESGLRVL-----AVNILGRFLLNNDKNIRYV 233 (530)
Q Consensus 165 ~~~~~~~~l-----~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~-~~~l~~~-----~v~~L~~lL~s~d~niry~ 233 (530)
.+++..+.+ ...|..++.+. +..|...|++++.++.. ++..... ++..|..+|.+++.++|..
T Consensus 262 ~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~ 335 (510)
T 3ul1_B 262 GPNERIEMVVKKGVVPQLVKLLGAT------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 335 (510)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHTCS------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHH
T ss_pred chhhhHHHHHhcccchhhhhhhcCC------ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHH
Confidence 655433322 23444455432 56799999999988754 3332222 2345667778889999999
Q ss_pred HHHHHHHHhccChHHHH-----HHHHHHhhhccCCcHHHHHHHHHHHHhccCh---hhHHHH-----HHHHHHHhhhcCc
Q psy4020 234 ALNTLLRTVYIDTSAVQ-----RHRNTILECLKDPDVSIRRRALELSFALVNS---ANVRSM-----MKELLIFLEKSEP 300 (530)
Q Consensus 234 aL~~L~~l~~~~p~~~~-----~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~---~Nv~~I-----v~eL~~yl~~~d~ 300 (530)
+...|..+....+...+ .-...++.++.+.|..+|+.|.-.|.+++.. +++..+ ++-|.+.+...|.
T Consensus 336 A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~ 415 (510)
T 3ul1_B 336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH
Confidence 99999999876654322 1244567788899999999999999988754 344433 4667777777788
Q ss_pred hhhhhhHHHHHHHHH
Q psy4020 301 DFKAHCSSNIVLCAE 315 (530)
Q Consensus 301 ~~~~~~i~~I~~la~ 315 (530)
+++..++.++..+..
T Consensus 416 ~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 416 KIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877776654
No 51
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.49 E-value=4.7e-06 Score=86.96 Aligned_cols=258 Identities=14% Similarity=0.089 Sum_probs=166.0
Q ss_pred hhcCCC--ChhhhhHHHHHHhcCCC-------hhhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChhhH-----
Q psy4020 69 NDLNSS--TQFVVGLALCTLGAIAS-------PEMSRDLASEVERLMKSS--NAYIRKKAALCAYRIILKVPELM----- 132 (530)
Q Consensus 69 kDL~s~--n~~vr~lALr~l~~i~~-------~el~~~l~~~V~~~l~~~--~~yVRK~A~la~~ki~~~~p~~i----- 132 (530)
.-++++ ++.+|-.|+.+++.+.. ....+.+.+.+.+++.+. ++.||+.|+-|+..+.....+..
T Consensus 135 ~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 214 (462)
T 1ibr_B 135 ANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE 214 (462)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 334456 88999999998887653 344577889999999998 79999999999988654333221
Q ss_pred Hh-hHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChh----hHH-HHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccC
Q psy4020 133 EI-FLPATRLLLSDKNHAIHQVKILKLLRILGKNDVE----ASE-AMNDILAQVATNTETSKNVGNTILYETVLSIMDIK 206 (530)
Q Consensus 133 ~~-~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~----~~~-~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~ 206 (530)
.. +++.+.+++.+.+..| ...+++.|..+....+. ... .+.+.+...+.. .+..|..+|+..+..+.
T Consensus 215 ~~~l~~~l~~~~~~~~~~v-r~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~v~~~a~~~l~~~~ 287 (462)
T 1ibr_B 215 RHFIMQVVCEATQCPDTRV-RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS------DIDEVALQGIEFWSNVC 287 (462)
T ss_dssp HHHHHHHHHHHTTCSSHHH-HHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC------SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CchHHHHHHHHHHHHHH
Confidence 22 3666777777777665 22344555444322111 011 333333333332 24567666666543321
Q ss_pred CC----------------------hHH----HHHHHHHHHHhcc-------CCCchhHHHHHHHHHHHhccChH-HHHHH
Q psy4020 207 SE----------------------SGL----RVLAVNILGRFLL-------NNDKNIRYVALNTLLRTVYIDTS-AVQRH 252 (530)
Q Consensus 207 ~~----------------------~~l----~~~~v~~L~~lL~-------s~d~niry~aL~~L~~l~~~~p~-~~~~~ 252 (530)
.. ... ....+..+...+. +.+.++|..+...|..++...++ .+...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~ 367 (462)
T 1ibr_B 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHV 367 (462)
T ss_dssp HHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHH
Confidence 10 011 1233444444443 23468999999999999877654 33333
Q ss_pred HHHHhhhccCCcHHHHHHHHHHHHhccChh-------hHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCC--chh
Q psy4020 253 RNTILECLKDPDVSIRRRALELSFALVNSA-------NVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPN--KRW 323 (530)
Q Consensus 253 ~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~-------Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~--~~~ 323 (530)
...+..++.+++..+|..++..+..++... .+..++..+...+.+.++..|..++.+++.++..+++. ...
T Consensus 368 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~ 447 (462)
T 1ibr_B 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV 447 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTT
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 444556788999999999999999998532 24668888888888888899999999999999988653 235
Q ss_pred HHHHHHHHHH
Q psy4020 324 HLDTLLKVLV 333 (530)
Q Consensus 324 ~vd~Ll~lL~ 333 (530)
+++.++..|-
T Consensus 448 ~l~~ll~~Ll 457 (462)
T 1ibr_B 448 YLAPLLQCLI 457 (462)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666443
No 52
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.44 E-value=0.0001 Score=79.46 Aligned_cols=280 Identities=13% Similarity=0.073 Sum_probs=194.0
Q ss_pred HHHHHhhcCC-CCchhHHHHHHHHhhccCChhHHH--H---HHHHHHhhcCCCChhhhhHHHHHHhcCCC--hhhHHH--
Q psy4020 28 LECLKLIASS-RFTDKRIGYLGAMLLLDERQDVHL--L---ITNSLKNDLNSSTQFVVGLALCTLGAIAS--PEMSRD-- 97 (530)
Q Consensus 28 ~~vikl~~S~-~~~~Krl~YL~l~~~~~~~~e~~~--L---~~Nsl~kDL~s~n~~vr~lALr~l~~i~~--~el~~~-- 97 (530)
+-.++++.+. +...+.-+--++..++..+++... . ++..|.+=|.++++.++-.|+.+|++|.. ++.-..
T Consensus 122 p~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~ 201 (529)
T 3tpo_A 122 PKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVI 201 (529)
T ss_dssp HHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3456777654 466777677777777766655322 1 56788888999999999999999999963 444333
Q ss_pred ---HHHHHHHHhcCCC-----HHHHHHHHHHHHHHHhhCh-----hhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcC
Q psy4020 98 ---LASEVERLMKSSN-----AYIRKKAALCAYRIILKVP-----ELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGK 164 (530)
Q Consensus 98 ---l~~~V~~~l~~~~-----~yVRK~A~la~~ki~~~~p-----~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~ 164 (530)
..+.+..++.+.+ ..+.+.|+.++..+.+... ..+...++.+..+|.+.++.| +......|..++.
T Consensus 202 ~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v-~~~a~~aL~~l~~ 280 (529)
T 3tpo_A 202 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV-LADSCWAISYLTD 280 (529)
T ss_dssp HTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH-HHHHHHHHHHHHS
T ss_pred HcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH-HHHHHHHHHHhhh
Confidence 3567788887643 4567888888888876431 234578999999999988876 3445566666665
Q ss_pred CChhhHHHH-----HHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC-ChHHHH-----HHHHHHHHhccCCCchhHHH
Q psy4020 165 NDVEASEAM-----NDILAQVATNTETSKNVGNTILYETVLSIMDIKS-ESGLRV-----LAVNILGRFLLNNDKNIRYV 233 (530)
Q Consensus 165 ~~~~~~~~l-----~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~-~~~l~~-----~~v~~L~~lL~s~d~niry~ 233 (530)
..++..+.+ ...|..++.+. +..|...|++++.++.. ++.... .++..|..+|.+.++++|.-
T Consensus 281 ~~~~~~~~v~~~g~i~~Lv~lL~~~------~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~ 354 (529)
T 3tpo_A 281 GPNERIEMVVKKGVVPQLVKLLGAT------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 354 (529)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHTCS------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred hhhhhHHHHHhccchHHHHHHhcCC------ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence 554433222 23344444432 56788899999888754 333222 23456788888999999999
Q ss_pred HHHHHHHHhccChHHHH-----HHHHHHhhhccCCcHHHHHHHHHHHHhccC---hhhHHHH-----HHHHHHHhhhcCc
Q psy4020 234 ALNTLLRTVYIDTSAVQ-----RHRNTILECLKDPDVSIRRRALELSFALVN---SANVRSM-----MKELLIFLEKSEP 300 (530)
Q Consensus 234 aL~~L~~l~~~~p~~~~-----~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n---~~Nv~~I-----v~eL~~yl~~~d~ 300 (530)
+...|..+....+...+ .-...++.++.+.+..+|+.|.-.|.+++. .+++..+ +.-|.+.+...|.
T Consensus 355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~ 434 (529)
T 3tpo_A 355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 434 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH
Confidence 99999999876664322 124456678889999999999999998874 4444444 3567777777788
Q ss_pred hhhhhhHHHHHHHH
Q psy4020 301 DFKAHCSSNIVLCA 314 (530)
Q Consensus 301 ~~~~~~i~~I~~la 314 (530)
+.+..++.++..+.
T Consensus 435 ~i~~~~L~aL~nil 448 (529)
T 3tpo_A 435 KIIQVILDAISNIF 448 (529)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777776654
No 53
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.43 E-value=1.2e-05 Score=75.00 Aligned_cols=151 Identities=19% Similarity=0.105 Sum_probs=116.4
Q ss_pred CCCCCCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHH-----HHHHHHhhcCCCChhhhhHHHHHHhcCC--Ch
Q psy4020 20 KYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLL-----ITNSLKNDLNSSTQFVVGLALCTLGAIA--SP 92 (530)
Q Consensus 20 G~d~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L-----~~Nsl~kDL~s~n~~vr~lALr~l~~i~--~~ 92 (530)
|++...+..-.++++.+++...++-+..++..+...+++.... ++..+.+-|.++++.+|..|+.+|+++. ++
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 5666777788999999999999999999999988666554221 4677888889999999999999999997 44
Q ss_pred hhHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCCCCCcchHHHHHHHHHhh
Q psy4020 93 EMSRD-----LASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSDKNHAIHQVKILKLLRIL 162 (530)
Q Consensus 93 el~~~-----l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l 162 (530)
+..+. ..+.+.+++.++++.||+.|+.++..+....++..+ .+++.+.+++.+.++.+ +...+..|..+
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v-~~~a~~aL~~l 165 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI-LQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHH-HHHHHHHHHHH
Confidence 44333 568899999999999999999999999887776543 47889999998877665 66777788888
Q ss_pred cCCChhhHH
Q psy4020 163 GKNDVEASE 171 (530)
Q Consensus 163 ~~~~~~~~~ 171 (530)
+..++...+
T Consensus 166 ~~~~~~~~~ 174 (210)
T 4db6_A 166 ASGGNEQKQ 174 (210)
T ss_dssp HTSCHHHHH
T ss_pred HcCCcHHHH
Confidence 776665443
No 54
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.42 E-value=4.2e-05 Score=86.10 Aligned_cols=212 Identities=12% Similarity=0.134 Sum_probs=158.6
Q ss_pred HHHHHHhhcCCCChhhhhHHHHHHhcCCCh-hhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-ChhhH---
Q psy4020 63 ITNSLKNDLNSSTQFVVGLALCTLGAIASP-EMS-----RDLASEVERLMKSSNAYIRKKAALCAYRIILK-VPELM--- 132 (530)
Q Consensus 63 ~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~-el~-----~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~-~p~~i--- 132 (530)
++..|..=|.++++.++..|.++|++|... +.. ...++++.+++.+.++-+|+.|+-|+.++... +|+.+
T Consensus 496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~ 575 (810)
T 3now_A 496 ITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSG 575 (810)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcc
Confidence 466778888999999999999999999753 322 22578889999999999999999999998763 56542
Q ss_pred ---HhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHH-----HHHHHHhhcccCCCCCcchhHHHHHHHHhc
Q psy4020 133 ---EIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMN-----DILAQVATNTETSKNVGNTILYETVLSIMD 204 (530)
Q Consensus 133 ---~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~-----~iL~~~l~~~~~~~n~~~aV~~eai~~i~~ 204 (530)
...++.+.++|......+.+...+..|..+...+++..+.+. +.|..++.+. +..|.-.|+.++.+
T Consensus 576 ~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~------~~~Vq~~A~~~L~N 649 (810)
T 3now_A 576 QRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED------HLYLTRAAAQCLCN 649 (810)
T ss_dssp HHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC------CTTHHHHHHHHHHH
T ss_pred hhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC------CHHHHHHHHHHHHH
Confidence 357899999997443334455678888888877665444333 3344444432 56799999999999
Q ss_pred cCCChHHHHH------HHHHHHHhccCCCchhHHHHHHHHHHHhccChH----HHH--HHHHHHhhhccCCcHHHHHHHH
Q psy4020 205 IKSESGLRVL------AVNILGRFLLNNDKNIRYVALNTLLRTVYIDTS----AVQ--RHRNTILECLKDPDVSIRRRAL 272 (530)
Q Consensus 205 l~~~~~l~~~------~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~----~~~--~~~~~i~~~l~d~d~~Ir~~aL 272 (530)
+...++.+.. ++..|..++.+.+.++|-.+...|..+...++. ++. .....+..++.++|..+++.|+
T Consensus 650 La~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~ 729 (810)
T 3now_A 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGI 729 (810)
T ss_dssp HTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred HhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHH
Confidence 8776554433 345677888889999999999999999875553 232 2445677888999999999999
Q ss_pred HHHHhccC
Q psy4020 273 ELSFALVN 280 (530)
Q Consensus 273 ~ll~~l~n 280 (530)
..+.+++.
T Consensus 730 ~aL~NL~~ 737 (810)
T 3now_A 730 VIILNMIN 737 (810)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999875
No 55
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.39 E-value=8e-06 Score=96.82 Aligned_cols=258 Identities=13% Similarity=0.130 Sum_probs=158.9
Q ss_pred hhcCCCChhhhhHHHHHHhcCC-------ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh-hHHhhHHHHH
Q psy4020 69 NDLNSSTQFVVGLALCTLGAIA-------SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPE-LMEIFLPATR 140 (530)
Q Consensus 69 kDL~s~n~~vr~lALr~l~~i~-------~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~-~i~~~i~~l~ 140 (530)
..+.|+++-+|-.|+..|.+.. +++..+.+.+.+.+.+.|+++.||+.|+.|+..+....++ .++.+++.+.
T Consensus 13 ~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll 92 (1230)
T 1u6g_C 13 EKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLC 92 (1230)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3345555555555544443321 2344566777777888888888888888888888776554 4456677777
Q ss_pred HhcCCCCCcchHHHHHHHHHh----hcCCC------hhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccC----
Q psy4020 141 LLLSDKNHAIHQVKILKLLRI----LGKND------VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIK---- 206 (530)
Q Consensus 141 ~lL~d~n~~V~qi~iL~lL~~----l~~~~------~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~---- 206 (530)
+.+.|.++.| +....+.+.. +.+.. ....+.+...|...+... .+..+..+|+.++..+-
T Consensus 93 ~~l~d~~~~v-R~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-----~~~~~~~~al~~l~~~~~~~~ 166 (1230)
T 1u6g_C 93 TNMLSDKEQL-RDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-----EDVSVQLEALDIMADMLSRQG 166 (1230)
T ss_dssp HHTTCSSSHH-HHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-----SCHHHHHHHHHHHHHHHHHTC
T ss_pred HHhcCCcHHH-HHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-----CchHHHHHHHHHHHHHHHHhH
Confidence 7777777665 2222222222 22210 112344444444444321 13456666666655431
Q ss_pred C--ChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHH-HHHHHHHHhhhccCC-cHHHHHHHHHHHHhccCh-
Q psy4020 207 S--ESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSA-VQRHRNTILECLKDP-DVSIRRRALELSFALVNS- 281 (530)
Q Consensus 207 ~--~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~-~~~~~~~i~~~l~d~-d~~Ir~~aL~ll~~l~n~- 281 (530)
. .+ ........+...|.+.++.+|-.++..+..++...++. +......++..+.++ +...|+.+++.+..++..
T Consensus 167 ~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~ 245 (1230)
T 1u6g_C 167 GLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 245 (1230)
T ss_dssp SSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS
T ss_pred hHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh
Confidence 1 12 23556777878888888999999999999998765432 233344455544432 346777778877766542
Q ss_pred -----hhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHH
Q psy4020 282 -----ANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLV 333 (530)
Q Consensus 282 -----~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~ 333 (530)
..+..++.-+++.+.+.+++.|..+...++.++..+++...-|+..++..+-
T Consensus 246 ~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll 302 (1230)
T 1u6g_C 246 GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICL 302 (1230)
T ss_dssp SGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHH
Confidence 3456788888888888788899999999999999888766667776666553
No 56
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.36 E-value=1.1e-05 Score=95.65 Aligned_cols=264 Identities=12% Similarity=0.084 Sum_probs=168.5
Q ss_pred CCchHHHHHhhcCCCCchhHHHHHHHHhhccCC-----hhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC---ChhhH
Q psy4020 24 HFGQLECLKLIASSRFTDKRIGYLGAMLLLDER-----QDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA---SPEMS 95 (530)
Q Consensus 24 sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~-----~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~---~~el~ 95 (530)
++.+...++-+.|+|-..|+++--.+...+..+ ++..--+...+.+-|.++|+.+|..|+.+++.+. .++..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 456677888899999999999966666655332 2223345567778888999999999998888764 34567
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh----------hHHhhHHHHHHhcCC-CCCcchHHHHHHHHHhhc-
Q psy4020 96 RDLASEVERLMKSSNAYIRKKAALCAYRIILKVPE----------LMEIFLPATRLLLSD-KNHAIHQVKILKLLRILG- 163 (530)
Q Consensus 96 ~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~----------~i~~~i~~l~~lL~d-~n~~V~qi~iL~lL~~l~- 163 (530)
+.+.+.+.+.+.|.++.||.+|+.|+..+....+. ..+.+++.+.+.+.| .+..+ +...++.|..++
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~-~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV-QLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHH-HHHHHHHHHHHHH
Confidence 78889999999999999999999999999877653 356788888888885 44443 444455555443
Q ss_pred ---CC-ChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC--ChHHHHHHHHHHHHhcc-CCCchhHHHHHH
Q psy4020 164 ---KN-DVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKS--ESGLRVLAVNILGRFLL-NNDKNIRYVALN 236 (530)
Q Consensus 164 ---~~-~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~--~~~l~~~~v~~L~~lL~-s~d~niry~aL~ 236 (530)
.. .| ..+.+.+.+...+.. .+..|.-.|++++..+.. ........+..+...|. ..+...|-.++.
T Consensus 164 ~~~~~l~~-~~~~ll~~l~~~L~~------~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 164 RQGGLLVN-FHPSILTCLLPQLTS------PRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp HTCSSCTT-THHHHHHHHGGGGGC------SSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred HhHhHHHH-HHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 21 22 223344444333332 245688888887765532 11122223344444443 333567777888
Q ss_pred HHHHHhccChHHHHHH----HHHHhhhccCCcHHHHHHHHHHHHhccC---hh---hHHHHHHHHHHHh
Q psy4020 237 TLLRTVYIDTSAVQRH----RNTILECLKDPDVSIRRRALELSFALVN---SA---NVRSMMKELLIFL 295 (530)
Q Consensus 237 ~L~~l~~~~p~~~~~~----~~~i~~~l~d~d~~Ir~~aL~ll~~l~n---~~---Nv~~Iv~eL~~yl 295 (530)
.+..++...|..+.+| ...++..+.|++..+|..+++.+..++. +. .+..++.-+++++
T Consensus 237 ~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l 305 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYL 305 (1230)
T ss_dssp HHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHh
Confidence 8888876655444333 3344555667788888888777665543 22 3455555555444
No 57
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.32 E-value=4.8e-05 Score=81.01 Aligned_cols=303 Identities=11% Similarity=0.022 Sum_probs=198.8
Q ss_pred hHHHHHhhcC-CCCchhHHHHHHHHhhccCChhHHHH----HHHHHHhhcCCCChhhhhHHHHHHhcCCCh--h----hH
Q psy4020 27 QLECLKLIAS-SRFTDKRIGYLGAMLLLDERQDVHLL----ITNSLKNDLNSSTQFVVGLALCTLGAIASP--E----MS 95 (530)
Q Consensus 27 ~~~vikl~~S-~~~~~Krl~YL~l~~~~~~~~e~~~L----~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~--e----l~ 95 (530)
....++++.+ ++...++.+--++..+.........+ ++..+.+=|.++++.++..|+.+|+++... + +.
T Consensus 61 i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 140 (529)
T 1jdh_A 61 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 140 (529)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 4456677754 47777777766666665432211111 455777778899999999999999998532 1 21
Q ss_pred -HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhh
Q psy4020 96 -RDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEA 169 (530)
Q Consensus 96 -~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~ 169 (530)
....+.+.+++.++++.+|..|+.++..+...+++.-. ..++.+.+++.+.++...+....++|..++.. ++.
T Consensus 141 ~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~ 219 (529)
T 1jdh_A 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSN 219 (529)
T ss_dssp HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTH
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-ccc
Confidence 34778899999999999999998888877765565332 45777888888877777777777888877753 333
Q ss_pred HHHHH--HHHHHHhhcccCCCCCcchhHHHHHHHHhccCCC---hHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhcc
Q psy4020 170 SEAMN--DILAQVATNTETSKNVGNTILYETVLSIMDIKSE---SGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYI 244 (530)
Q Consensus 170 ~~~l~--~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~---~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~ 244 (530)
.+.+. ..+..++.-.. +.+..+..+|+.++.++... ......++..|..+|.+.++.+|..++..|..+...
T Consensus 220 ~~~~~~~g~~~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 220 KPAIVEAGGMQALGLHLT---DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp HHHHHHTTHHHHHHTTTT---SSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCHHHHHHHHh---CCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 33332 12323222211 12567888888888766421 112345778888999889999999999999999876
Q ss_pred ChHHHH-----HHHHHHhhhccC--CcHHHHHHHHHHHHhccCh--hh---HHH-----HHHHHHHHhhhcC-chhhhhh
Q psy4020 245 DTSAVQ-----RHRNTILECLKD--PDVSIRRRALELSFALVNS--AN---VRS-----MMKELLIFLEKSE-PDFKAHC 306 (530)
Q Consensus 245 ~p~~~~-----~~~~~i~~~l~d--~d~~Ir~~aL~ll~~l~n~--~N---v~~-----Iv~eL~~yl~~~d-~~~~~~~ 306 (530)
+++..+ .-...++.++.+ ++..++..++..+.+++.. ++ ... .+..|.+.+.+.+ .+.+..+
T Consensus 297 ~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a 376 (529)
T 1jdh_A 297 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHH
Confidence 553221 123455566653 3478999999999999863 21 122 2355666666554 4788999
Q ss_pred HHHHHHHHHhhCCCch-----hHHHHHHHHHHH
Q psy4020 307 SSNIVLCAERFAPNKR-----WHLDTLLKVLVA 334 (530)
Q Consensus 307 i~~I~~la~k~~~~~~-----~~vd~Ll~lL~~ 334 (530)
+..++.++.. +.... -.+..|++++..
T Consensus 377 ~~~l~nl~~~-~~~~~~~~~~~~i~~L~~ll~~ 408 (529)
T 1jdh_A 377 VGLIRNLALC-PANHAPLREQGAIPRLVQLLVR 408 (529)
T ss_dssp HHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHhcC-hhhhHHHHHcCCHHHHHHHHHH
Confidence 9999888752 11111 235566666664
No 58
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.09 E-value=0.00031 Score=77.36 Aligned_cols=304 Identities=12% Similarity=0.028 Sum_probs=197.9
Q ss_pred hHHHHHhhcCC-CCchhHHHHHHHHhhccCChhHHH----HHHHHHHhhcCCCChhhhhHHHHHHhcCCCh------hhH
Q psy4020 27 QLECLKLIASS-RFTDKRIGYLGAMLLLDERQDVHL----LITNSLKNDLNSSTQFVVGLALCTLGAIASP------EMS 95 (530)
Q Consensus 27 ~~~vikl~~S~-~~~~Krl~YL~l~~~~~~~~e~~~----L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~------el~ 95 (530)
....++++.+. +.+.++-+--++..+......... =++..|.+-|.++++.++..|+.+|+++... .+.
T Consensus 58 i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~ 137 (644)
T 2z6h_A 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 137 (644)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHH
Confidence 34467777764 777777766666655543221111 1456777778899999999999999998632 122
Q ss_pred -HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhh
Q psy4020 96 -RDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEA 169 (530)
Q Consensus 96 -~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~ 169 (530)
...++.+.+++.+.++-++..|+.|+..+....++... ..++.+.++|.+.+....+....++|..++.. ++.
T Consensus 138 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~ 216 (644)
T 2z6h_A 138 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSN 216 (644)
T ss_dssp HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTH
T ss_pred HCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-ccc
Confidence 34788999999999999999988888888765655322 46788888898876655666777888877753 333
Q ss_pred HHHHHH--HHHHHhhcccCCCCCcchhHHHHHHHHhccCCC---hHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhcc
Q psy4020 170 SEAMND--ILAQVATNTETSKNVGNTILYETVLSIMDIKSE---SGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYI 244 (530)
Q Consensus 170 ~~~l~~--iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~---~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~ 244 (530)
.+.+.+ .+..++.-.. +.+..+...|+.++.++... ......++..|..+|.+.++++|..+...|..+...
T Consensus 217 ~~~l~~~g~l~~L~~ll~---~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 217 KPAIVEAGGMQALGLHLT---DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp HHHHHHTTHHHHHHTTTT---CSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHh---cCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 333332 2333322211 12567888888888766421 122346788888999989999999999999999876
Q ss_pred ChHH---H-H-HHHHHHhhhccC-Cc-HHHHHHHHHHHHhccCh--hh--HH------HHHHHHHHHhhhcC-chhhhhh
Q psy4020 245 DTSA---V-Q-RHRNTILECLKD-PD-VSIRRRALELSFALVNS--AN--VR------SMMKELLIFLEKSE-PDFKAHC 306 (530)
Q Consensus 245 ~p~~---~-~-~~~~~i~~~l~d-~d-~~Ir~~aL~ll~~l~n~--~N--v~------~Iv~eL~~yl~~~d-~~~~~~~ 306 (530)
.+.. + + .-...++.++.+ ++ ..++..++..|..++.. ++ .+ ..+..|.+.+...+ .+++..+
T Consensus 294 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a 373 (644)
T 2z6h_A 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHH
Confidence 5432 1 1 123455566654 22 68999999999999853 11 11 24566666666543 5788899
Q ss_pred HHHHHHHHHhhCC----CchhHHHHHHHHHHH
Q psy4020 307 SSNIVLCAERFAP----NKRWHLDTLLKVLVA 334 (530)
Q Consensus 307 i~~I~~la~k~~~----~~~~~vd~Ll~lL~~ 334 (530)
+..++.++..-.. ...-.+..|+++|..
T Consensus 374 ~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~ 405 (644)
T 2z6h_A 374 VGLIRNLALCPANHAPLREQGAIPRLVQLLVR 405 (644)
T ss_dssp HHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHcCCHHHHHHHHhc
Confidence 8888887641100 011245566666654
No 59
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.06 E-value=0.0044 Score=67.27 Aligned_cols=339 Identities=13% Similarity=0.056 Sum_probs=211.4
Q ss_pred CCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhHH--HH---HHHHHHhhcCCCChhhhhHHHHHHhcCCC---hhhH
Q psy4020 24 HFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVH--LL---ITNSLKNDLNSSTQFVVGLALCTLGAIAS---PEMS 95 (530)
Q Consensus 24 sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~--~L---~~Nsl~kDL~s~n~~vr~lALr~l~~i~~---~el~ 95 (530)
+.+....|+++.|++...+.-+--++..+...+++.- +. ++..|.+-|.++++.++-.|..+|.+|.. ++.-
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 3456778999999999888877777777775554422 11 56788888999999999999999998885 4443
Q ss_pred HH-----HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChh----hHHhhHHHHHHhcC-------C--------C---C
Q psy4020 96 RD-----LASEVERLMKS-SNAYIRKKAALCAYRIILKVPE----LMEIFLPATRLLLS-------D--------K---N 147 (530)
Q Consensus 96 ~~-----l~~~V~~~l~~-~~~yVRK~A~la~~ki~~~~p~----~i~~~i~~l~~lL~-------d--------~---n 147 (530)
.. .++.+.++|.+ .++.+++.|+-|+..+.. +++ +++..++.+.+++. + + +
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHhccHHHHHHHHhccccccccccccccccccccc
Confidence 22 47888888886 688999999999988865 443 34556777777661 1 0 1
Q ss_pred CcchHHHHHHHHHhhcCCChhhHHHHH------HHHHHHhhcccCCCCCcchhHHHHHHHHhccCCC-------------
Q psy4020 148 HAIHQVKILKLLRILGKNDVEASEAMN------DILAQVATNTETSKNVGNTILYETVLSIMDIKSE------------- 208 (530)
Q Consensus 148 ~~V~qi~iL~lL~~l~~~~~~~~~~l~------~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~------------- 208 (530)
.. ++......|+.++..+++....+. +.|..++.........+...+-.|+.++-+++..
T Consensus 206 ~~-V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 206 ES-VLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp HH-HHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred HH-HHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 22 466677788888877665444333 2333333321000011334566666666443211
Q ss_pred --------------hH---H-HHHHHHHHHHhcc-CCCchhHHHHHHHHHHHhccC-h--H----HH--HHHHHHHhhhc
Q psy4020 209 --------------SG---L-RVLAVNILGRFLL-NNDKNIRYVALNTLLRTVYID-T--S----AV--QRHRNTILECL 260 (530)
Q Consensus 209 --------------~~---l-~~~~v~~L~~lL~-s~d~niry~aL~~L~~l~~~~-p--~----~~--~~~~~~i~~~l 260 (530)
.+ + ...++..|..+|. +.++.++--+...|..++... + . .+ ..-...+..+|
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 00 0 1135667788885 567889999999998886532 2 1 22 23356677888
Q ss_pred cCCcHHHHHHHHHHHHhccChhhHHHHH-----HHHHHHhhhc--------CchhhhhhHHHHHHHHHhhCCCc-----h
Q psy4020 261 KDPDVSIRRRALELSFALVNSANVRSMM-----KELLIFLEKS--------EPDFKAHCSSNIVLCAERFAPNK-----R 322 (530)
Q Consensus 261 ~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv-----~eL~~yl~~~--------d~~~~~~~i~~I~~la~k~~~~~-----~ 322 (530)
.+++..+++.+...|.+|+...+...++ ..|.+.+... ..+.+..++.+++.++..-+... .
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~ 444 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRET 444 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 9999999999999999998766555544 4444444433 23566667777777664322211 1
Q ss_pred hHHHHHHHHHHHhhhhhhcchhhhHHHHHHHHHHhhcCcchHHHHHh
Q psy4020 323 WHLDTLLKVLVANLLGFSNRALRDQRRALELSFALVNSANVRSMMKE 369 (530)
Q Consensus 323 ~~vd~Ll~lL~~~~~~~v~~a~eiq~~a~e~~~ll~~~p~~r~~ile 369 (530)
-.+..|++++..+- ..-.+++-|.-+..-+..|.++|..+.+
T Consensus 445 g~I~~Lv~LL~s~~-----~~~~v~k~Aa~vL~nl~~~~elr~~~kk 486 (584)
T 3l6x_A 445 QGIEKLVLINKSGN-----RSEKEVRAAALVLQTIWGYKELRKPLEK 486 (584)
T ss_dssp THHHHHHHHHTCSS-----SCHHHHHHHHHHHHHHHTSHHHHHHHHT
T ss_pred CChHHHHHHHhCCC-----CChHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 34556666665420 0112344444444444578888887765
No 60
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.01 E-value=7.5e-05 Score=71.67 Aligned_cols=129 Identities=13% Similarity=0.120 Sum_probs=102.2
Q ss_pred HHHHhhcCCCCchhHHHHHHHHhhccCC-----hhHHHHHHHHHHhhcC-CCChhhhhHHHHHHhcCCC---h---hhHH
Q psy4020 29 ECLKLIASSRFTDKRIGYLGAMLLLDER-----QDVHLLITNSLKNDLN-SSTQFVVGLALCTLGAIAS---P---EMSR 96 (530)
Q Consensus 29 ~vikl~~S~~~~~Krl~YL~l~~~~~~~-----~e~~~L~~Nsl~kDL~-s~n~~vr~lALr~l~~i~~---~---el~~ 96 (530)
++.+.++|++...|+.|-..+..+.+.. ++.. =+++.+++=+. ++|..+|..|+.+++.+.. + ..++
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~-~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYG-ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4677889999999999998888877542 2222 34677777774 8999999999999998773 2 4567
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHh
Q psy4020 97 DLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRI 161 (530)
Q Consensus 97 ~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~ 161 (530)
.+.+.+.+.+.|+++.||..|..|+..++...+ ++.+++.+...+.++|+.+ +..++.++..
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~v-r~~~l~~l~~ 159 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSV-KSETALFIAR 159 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHH-HHHHHHHHHH
Confidence 799999999999999999999999999988654 5678888888998888765 4556666665
No 61
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.93 E-value=0.00011 Score=70.61 Aligned_cols=53 Identities=13% Similarity=0.265 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH----HhhHHHHHHhcC-CCCCcc
Q psy4020 98 LASEVERLMKSSNAYIRKKAALCAYRIILKVPELM----EIFLPATRLLLS-DKNHAI 150 (530)
Q Consensus 98 l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i----~~~i~~l~~lL~-d~n~~V 150 (530)
+-+.+.+.+.|++..+|+.|+.++..+....|+.. .++++.+..++. |.|+.|
T Consensus 16 l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V 73 (242)
T 2qk2_A 16 MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVL 73 (242)
T ss_dssp SCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHH
T ss_pred CCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHH
Confidence 34456678889999999999999999988755432 366777777884 777766
No 62
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.92 E-value=0.003 Score=66.70 Aligned_cols=237 Identities=14% Similarity=0.140 Sum_probs=158.5
Q ss_pred hhhHHHHHHhcCCChhhHH------HHHHHHHHHhc-----------CCCHHHHHHHHHHHHHHHhhChh---hH---Hh
Q psy4020 78 VVGLALCTLGAIASPEMSR------DLASEVERLMK-----------SSNAYIRKKAALCAYRIILKVPE---LM---EI 134 (530)
Q Consensus 78 vr~lALr~l~~i~~~el~~------~l~~~V~~~l~-----------~~~~yVRK~A~la~~ki~~~~p~---~i---~~ 134 (530)
..+.|+.+|+++...+-.+ ...+.+.+++. +.++-+++.|+.++..+....++ .+ ..
T Consensus 164 ~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 164 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp TTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 3559999999998543322 24566777773 13578999999999999876542 23 24
Q ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHhhcCC-ChhhHHHHH-----HHHHHHhhcccCCCCCcchhHHHHHHHHhccCC-
Q psy4020 135 FLPATRLLLSDKNHAIHQVKILKLLRILGKN-DVEASEAMN-----DILAQVATNTETSKNVGNTILYETVLSIMDIKS- 207 (530)
Q Consensus 135 ~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~-~~~~~~~l~-----~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~- 207 (530)
+++.+.++|.+.++.+ |......|+.+... +++..+.+. ..|..++... .+..+.-.|+.++.++..
T Consensus 244 aIp~LV~LL~s~~~~v-~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s-----~~~~v~~~A~~aL~nLs~~ 317 (458)
T 3nmz_A 244 CMRALVAQLKSESEDL-QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV-----KKESTLKSVLSALWNLSAH 317 (458)
T ss_dssp HHHHHHHGGGCSCHHH-HHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC-----CSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCHHH-HHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC-----CCHHHHHHHHHHHHHHccC
Confidence 6999999999877766 55566677777653 555444333 2333332211 145677788888877764
Q ss_pred ChHHH------HHHHHHHHHhccCCCc----hhHHHHHHHHHHHhc---cChHH---HH--HHHHHHhhhccCCcHHHHH
Q psy4020 208 ESGLR------VLAVNILGRFLLNNDK----NIRYVALNTLLRTVY---IDTSA---VQ--RHRNTILECLKDPDVSIRR 269 (530)
Q Consensus 208 ~~~l~------~~~v~~L~~lL~s~d~----niry~aL~~L~~l~~---~~p~~---~~--~~~~~i~~~l~d~d~~Ir~ 269 (530)
.++.. ..++..|..+|.+.+. +++.-+...|..+.. ..++. +. .-...++.+|.+.+..+++
T Consensus 318 ~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~ 397 (458)
T 3nmz_A 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 397 (458)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHH
T ss_pred CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHH
Confidence 32221 2356778888875443 377777776766664 34432 22 2245677888999999999
Q ss_pred HHHHHHHhcc--ChhhHHHHH-----HHHHHHhhhcCchhhhhhHHHHHHHHHhhCCC
Q psy4020 270 RALELSFALV--NSANVRSMM-----KELLIFLEKSEPDFKAHCSSNIVLCAERFAPN 320 (530)
Q Consensus 270 ~aL~ll~~l~--n~~Nv~~Iv-----~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~ 320 (530)
.|.-.|.+++ +++|...|+ .-|.+.+...+...++.+..++..++..-|.+
T Consensus 398 ~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~k 455 (458)
T 3nmz_A 398 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 455 (458)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhh
Confidence 9999999998 578887775 34555555567888999999999998765544
No 63
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.91 E-value=0.0046 Score=65.17 Aligned_cols=285 Identities=14% Similarity=0.083 Sum_probs=174.0
Q ss_pred hHHHHHhhcCCCCchhHHHHHHHHhhccCChhHH--H---HHHHHHHhhcCCCChhhhhHHHHHHhcCC--ChhhHHHH-
Q psy4020 27 QLECLKLIASSRFTDKRIGYLGAMLLLDERQDVH--L---LITNSLKNDLNSSTQFVVGLALCTLGAIA--SPEMSRDL- 98 (530)
Q Consensus 27 ~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~--~---L~~Nsl~kDL~s~n~~vr~lALr~l~~i~--~~el~~~l- 98 (530)
....++++.|++.+.+.-+--++..+...+++.- + -++..|.+-|.++++.++-.|..+|.++. +++.-..+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4567889999998888888777777775544322 1 14566777888999999888888888876 35655444
Q ss_pred ----HHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChh----hHHhhHHHHHHhcC--------CCC--------CcchHH
Q psy4020 99 ----ASEVERLMK-SSNAYIRKKAALCAYRIILKVPE----LMEIFLPATRLLLS--------DKN--------HAIHQV 153 (530)
Q Consensus 99 ----~~~V~~~l~-~~~~yVRK~A~la~~ki~~~~p~----~i~~~i~~l~~lL~--------d~n--------~~V~qi 153 (530)
++.+.++|. +.++.++..|+-|+..+... ++ +++..++.+.++|. +.+ +. ++.
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~-v~~ 161 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE-VFF 161 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHH-HHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHH-HHH
Confidence 688999999 88999999999999999875 43 34467888889883 221 11 333
Q ss_pred HHHHHHHhhcCCChhhHHHHH------HHHHHHhhcccCCCCCcchhHHHHHHHHhccCC--------------------
Q psy4020 154 KILKLLRILGKNDVEASEAMN------DILAQVATNTETSKNVGNTILYETVLSIMDIKS-------------------- 207 (530)
Q Consensus 154 ~iL~lL~~l~~~~~~~~~~l~------~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~-------------------- 207 (530)
.....|..++.. ++..+.+. +.|..++.+.......+.-++-.|+.++-++..
T Consensus 162 ~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 162 NATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 566777777765 55433332 223333332100000011222233322222110
Q ss_pred -------------------------------Ch-H---H-HHHHHHHHHHhcc-CCCchhHHHHHHHHHHHhccChH---
Q psy4020 208 -------------------------------ES-G---L-RVLAVNILGRFLL-NNDKNIRYVALNTLLRTVYIDTS--- 247 (530)
Q Consensus 208 -------------------------------~~-~---l-~~~~v~~L~~lL~-s~d~niry~aL~~L~~l~~~~p~--- 247 (530)
++ . + ...++..|..+|. ++++.++-.+...|..+...+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 00 0 0 1134556667775 56788999999999998753321
Q ss_pred -----HH--HHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHH-----HHHHHHhhhcCc------hhhhhhHHH
Q psy4020 248 -----AV--QRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMM-----KELLIFLEKSEP------DFKAHCSSN 309 (530)
Q Consensus 248 -----~~--~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv-----~eL~~yl~~~d~------~~~~~~i~~ 309 (530)
.+ ..-...++.+|.++|..+++.|...|..++...-...++ ..|.+.+...+. +....++.+
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~ 400 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT 400 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHH
Confidence 12 122456778899999999999999999987554444333 445555554433 234445555
Q ss_pred HHHHH
Q psy4020 310 IVLCA 314 (530)
Q Consensus 310 I~~la 314 (530)
++.+.
T Consensus 401 l~ni~ 405 (457)
T 1xm9_A 401 VRNLM 405 (457)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 64
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.90 E-value=0.0013 Score=67.09 Aligned_cols=240 Identities=14% Similarity=0.148 Sum_probs=158.6
Q ss_pred cCCCChhhhhHHHHHHhcCCChhhHH------HHHHHHHHHhc-----------CCCHHHHHHHHHHHHHHHhhCh---h
Q psy4020 71 LNSSTQFVVGLALCTLGAIASPEMSR------DLASEVERLMK-----------SSNAYIRKKAALCAYRIILKVP---E 130 (530)
Q Consensus 71 L~s~n~~vr~lALr~l~~i~~~el~~------~l~~~V~~~l~-----------~~~~yVRK~A~la~~ki~~~~p---~ 130 (530)
.-.+++...+.|+++|+++...+-.+ ...+.+.++|. +.++-+|+.|+.++..+....+ .
T Consensus 41 ~~~~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~ 120 (354)
T 3nmw_A 41 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 120 (354)
T ss_dssp CCCGGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 44556677889999999987433221 24566666663 1357899999999999986544 2
Q ss_pred hH---HhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCC-ChhhHHHHH-----HHHHHHhhcccCCCCCcchhHHHHHHH
Q psy4020 131 LM---EIFLPATRLLLSDKNHAIHQVKILKLLRILGKN-DVEASEAMN-----DILAQVATNTETSKNVGNTILYETVLS 201 (530)
Q Consensus 131 ~i---~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~-~~~~~~~l~-----~iL~~~l~~~~~~~n~~~aV~~eai~~ 201 (530)
.+ ..+++.+.++|.+.++.+ |......|+.+... +++.++.+. ..|..++.+. .+..+.-.|+.+
T Consensus 121 ~i~~~~GaIp~LV~LL~s~~~~v-~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~-----~~~~~~~~A~~a 194 (354)
T 3nmw_A 121 TLCSMKGCMRALVAQLKSESEDL-QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV-----KKESTLKSVLSA 194 (354)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHHH-HHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHCCCCHHH-HHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC-----CCHHHHHHHHHH
Confidence 33 246999999998877765 55556666666653 444433332 2333332211 145677788888
Q ss_pred HhccCC-ChHHH------HHHHHHHHHhccCCCc----hhHHHHHHHHHHHhc---cChHH---HHH--HHHHHhhhccC
Q psy4020 202 IMDIKS-ESGLR------VLAVNILGRFLLNNDK----NIRYVALNTLLRTVY---IDTSA---VQR--HRNTILECLKD 262 (530)
Q Consensus 202 i~~l~~-~~~l~------~~~v~~L~~lL~s~d~----niry~aL~~L~~l~~---~~p~~---~~~--~~~~i~~~l~d 262 (530)
+.+++. .++.. ..++..|..+|.+.+. +++.-+...|..+.. ..++. +.+ -...++.+|.+
T Consensus 195 L~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~ 274 (354)
T 3nmw_A 195 LWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 274 (354)
T ss_dssp HHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred HHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 888765 33221 2356778888875443 477767666666654 34432 221 25567788889
Q ss_pred CcHHHHHHHHHHHHhcc--ChhhHHHHH-----HHHHHHhhhcCchhhhhhHHHHHHHHHh
Q psy4020 263 PDVSIRRRALELSFALV--NSANVRSMM-----KELLIFLEKSEPDFKAHCSSNIVLCAER 316 (530)
Q Consensus 263 ~d~~Ir~~aL~ll~~l~--n~~Nv~~Iv-----~eL~~yl~~~d~~~~~~~i~~I~~la~k 316 (530)
.+..+++.|.-.|.+++ ++++...++ .-|.+.+...+...++.+..++..++..
T Consensus 275 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 275 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999998 577777665 4455566666788899999999998865
No 65
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.69 E-value=0.0018 Score=64.45 Aligned_cols=166 Identities=14% Similarity=0.051 Sum_probs=105.3
Q ss_pred hhhHHHHHHhcCCC-hhhHHH-----HHHHHHH-HhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCC
Q psy4020 78 VVGLALCTLGAIAS-PEMSRD-----LASEVER-LMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSD 145 (530)
Q Consensus 78 vr~lALr~l~~i~~-~el~~~-----l~~~V~~-~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d 145 (530)
-|..||..|..+.. .+.+.. ..+.+.+ +|.++++.||..|+-|+..+...+|+.-. ..++.+..+|.+
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 44455555555442 233322 3455666 78888888888888888888777765322 466777777764
Q ss_pred -CCCcchHHHHHHHHHhhcCCChhhHHHHH-----HHHHHHhhcccCCCCCcchhHHHHHHHHhccCC-ChHHH-----H
Q psy4020 146 -KNHAIHQVKILKLLRILGKNDVEASEAMN-----DILAQVATNTETSKNVGNTILYETVLSIMDIKS-ESGLR-----V 213 (530)
Q Consensus 146 -~n~~V~qi~iL~lL~~l~~~~~~~~~~l~-----~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~-~~~l~-----~ 213 (530)
.+.. .+.+.+..|..+++.++...+.+. ..|..++.+. +..|..+|+.++.++.. +++.. .
T Consensus 136 ~~~~~-v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~------d~~v~~~A~~aLs~L~~~~~~~~~~vv~~ 208 (296)
T 1xqr_A 136 DACDT-VRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ------VQKLKVKSAFLLQNLLVGHPEHKGTLCSM 208 (296)
T ss_dssp CSCHH-HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS------CHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred CCCHH-HHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC------CHHHHHHHHHHHHHHHhCChHHHHHHHHc
Confidence 2333 355666777777766655433332 3444555532 55688888888877632 22211 2
Q ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHH
Q psy4020 214 LAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQ 250 (530)
Q Consensus 214 ~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~ 250 (530)
.++..|..+|.++++.++-.+++.|..|+...+....
T Consensus 209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~ 245 (296)
T 1xqr_A 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR 245 (296)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHH
Confidence 4667888999989999999999999999877665443
No 66
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00085 Score=65.00 Aligned_cols=199 Identities=12% Similarity=0.114 Sum_probs=98.2
Q ss_pred HhhcCCCCchhHHHHHHHHh-hccCChhHH------HHHHHHHHhhc-CCCChhhhhHHHHHHhcCCC----h----hhH
Q psy4020 32 KLIASSRFTDKRIGYLGAML-LLDERQDVH------LLITNSLKNDL-NSSTQFVVGLALCTLGAIAS----P----EMS 95 (530)
Q Consensus 32 kl~~S~~~~~Krl~YL~l~~-~~~~~~e~~------~L~~Nsl~kDL-~s~n~~vr~lALr~l~~i~~----~----el~ 95 (530)
+.++|++-.+|+-++..+.. ++...+++. .-++..+++-+ +++|..+|..|+++++.+.. + ..+
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~ 102 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 102 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 34467777777777766666 554322111 12255555555 56666666666666665442 1 223
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh-h----HHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhH
Q psy4020 96 RDLASEVERLMKSSNAYIRKKAALCAYRIILKVPE-L----MEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEAS 170 (530)
Q Consensus 96 ~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~-~----i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~ 170 (530)
..+.+.+...+.|+.+-||..|..|+-.++...+. . ++.+++.+.. .+...++...
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~-------------------~l~~k~~~vk 163 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILE-------------------HMKHKTPQIR 163 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHH-------------------HTTCSSHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHH-------------------HHcCCChHHH
Confidence 44556666666666666666666655555543211 0 1112211111 1122233333
Q ss_pred HHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHH-HHHHHHHHHhccCCCchhHHHHHHHHHHHhccC-hHH
Q psy4020 171 EAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR-VLAVNILGRFLLNNDKNIRYVALNTLLRTVYID-TSA 248 (530)
Q Consensus 171 ~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~-~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~-p~~ 248 (530)
+.....|..++..... .+.-+ .... ...+..|..++.++++++|-.+..++..+...- .+.
T Consensus 164 ~~al~~l~~~~~~~~~----~~~~l-------------~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~ 226 (249)
T 2qk1_A 164 MECTQLFNASMKEEKD----GYSTL-------------QRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNT 226 (249)
T ss_dssp HHHHHHHHHHHHHCCS----CSHHH-------------HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGG
T ss_pred HHHHHHHHHHHHHcCC----cchhH-------------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHH
Confidence 3333333333321100 00000 0123 345667777888888889999988888877542 233
Q ss_pred HHHHHHHHhhhccCCcHHHHHHHHHH
Q psy4020 249 VQRHRNTILECLKDPDVSIRRRALEL 274 (530)
Q Consensus 249 ~~~~~~~i~~~l~d~d~~Ir~~aL~l 274 (530)
+.+|...+ | .+|++++.-
T Consensus 227 ~~p~l~~L-----d---~~k~~ki~~ 244 (249)
T 2qk1_A 227 FVKTLEHL-----D---NLKRKKIEE 244 (249)
T ss_dssp GHHHHHHS-----C---HHHHHHHHH
T ss_pred HHHHHHHH-----h---HHHHHHHHH
Confidence 45544432 1 356666554
No 67
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.61 E-value=5.3e-05 Score=65.64 Aligned_cols=106 Identities=15% Similarity=0.065 Sum_probs=78.4
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhc
Q psy4020 28 LECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMK 107 (530)
Q Consensus 28 ~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~ 107 (530)
..+++++.+++...|+.+.-++..+.+.. +..+.+-|.++++.+|..|++.|+++..++. .+.+.+.+.
T Consensus 15 ~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-------~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a----~~~L~~~L~ 83 (131)
T 1te4_A 15 VPRGSHMADENKWVRRDVSTALSRMGDEA-------FEPLLESLSNEDWRIRGAAAWIIGNFQDERA----VEPLIKLLE 83 (131)
T ss_dssp ------CCSSCCCSSSSCCSSTTSCSSTT-------HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHH----HHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCchH-------HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHc
Confidence 34678889999888887766665543321 3677788889999999999999999998754 556667778
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcc
Q psy4020 108 SSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAI 150 (530)
Q Consensus 108 ~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V 150 (530)
|+++.||..|+.++.++- .| ..++.+.+++.|.|+.|
T Consensus 84 d~~~~VR~~A~~aL~~~~--~~----~a~~~L~~~l~d~~~~v 120 (131)
T 1te4_A 84 DDSGFVRSGAARSLEQIG--GE----RVRAAMEKLAETGTGFA 120 (131)
T ss_dssp HCCTHHHHHHHHHHHHHC--SH----HHHHHHHHHTTSCCTHH
T ss_pred CCCHHHHHHHHHHHHHhC--cH----HHHHHHHHHHhCCCHHH
Confidence 999999999999999874 33 45667777888888766
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.59 E-value=0.0018 Score=61.31 Aligned_cols=193 Identities=14% Similarity=0.108 Sum_probs=130.2
Q ss_pred hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCC-Chhh-HHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhc----cCC
Q psy4020 134 IFLPATRLLLSDKNHAIHQVKILKLLRILGKN-DVEA-SEAMNDILAQVATNTETSKNVGNTILYETVLSIMD----IKS 207 (530)
Q Consensus 134 ~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~-~~~~-~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~----l~~ 207 (530)
+.+..+.++|.|+|+-| +...+..+..+... +... ...+.+.+..++.-+ +..+.-|...|++|+-. .+.
T Consensus 33 ~~l~~L~~LL~dkD~~v-k~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~ll---k~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 33 RALFLILELAGEDDETT-RLRAFVALGEILKRADSDLRMMVLERHLDVFINAL---SQENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHHHHTTSSCHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC---CSTTHHHHHHHHHHHHHHHTTCCB
T ss_pred hHHHHHHHHHhccchHH-HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH---hccchhHHHHHHHHHHHHHcCCCC
Confidence 45667888999998876 44555555544332 1111 122233444443321 12356677777776533 344
Q ss_pred ChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChh----h
Q psy4020 208 ESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSA----N 283 (530)
Q Consensus 208 ~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~----N 283 (530)
+++-...+++.+...+.++++=++.-+.+.+..+--..+ .......++.++.+.|+.+|.-++.++..+++.+ +
T Consensus 109 ~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~--~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i 186 (265)
T 3b2a_A 109 GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLED--SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGH 186 (265)
T ss_dssp CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC--CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCC
T ss_pred CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc--hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHH
Confidence 566677889999999988888888889999888832221 1223445667789999999999999999998765 4
Q ss_pred HHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 284 VRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 284 v~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
++.|++|+.+.+...|+.++..++..+..+..+ |-.+..++-+.+++..
T Consensus 187 ~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~--pi~~~~~~~~~~~~~~ 235 (265)
T 3b2a_A 187 LTLILDEIPSLLQNDNEFIVELALDVLEKALSF--PLLENVKIELLKISRI 235 (265)
T ss_dssp GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS--CCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--cccHhHHHHHHHHHHH
Confidence 999999999999988988898888888777654 2233455656665554
No 69
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.52 E-value=0.005 Score=69.89 Aligned_cols=117 Identities=14% Similarity=0.089 Sum_probs=78.9
Q ss_pred cchhHHHHHHHHh--ccCC-ChHHHHHHHHHHHHhc-cCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhh-hccCCcH
Q psy4020 191 GNTILYETVLSIM--DIKS-ESGLRVLAVNILGRFL-LNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILE-CLKDPDV 265 (530)
Q Consensus 191 ~~aV~~eai~~i~--~l~~-~~~l~~~~v~~L~~lL-~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~-~l~d~d~ 265 (530)
++.+.|.++-++. +.+. +. .+++.|...+ .+.+.++|-.|.-.|..+....|+.+.+ ++. +..+.|+
T Consensus 555 dp~vRygaa~alglAyaGTGn~----~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~r----lv~~L~~~~d~ 626 (963)
T 4ady_A 555 ESLLRYGGAFTIALAYAGTGNN----SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPR----IVQLLSKSHNA 626 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTSCCH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHH----HTTTGGGCSCH
T ss_pred CHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHH----HHHHHHhcCCH
Confidence 4567777666542 2222 22 3455444444 4567789999999998887767765433 443 3456788
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHH
Q psy4020 266 SIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAE 315 (530)
Q Consensus 266 ~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~ 315 (530)
.+|+-+.--+-.++-...-..+++-|..+..+.|.+.|+.++.++|.+..
T Consensus 627 ~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 627 HVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 89988877777666544457788877777788888889999888888764
No 70
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.0012 Score=63.92 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=75.0
Q ss_pred HHhh-cCCCCchhHHHHHHHHhhccCCh------hHHHHHHHHHHhhcCCCChhhhhH---HHHHHhcCCChhh----HH
Q psy4020 31 LKLI-ASSRFTDKRIGYLGAMLLLDERQ------DVHLLITNSLKNDLNSSTQFVVGL---ALCTLGAIASPEM----SR 96 (530)
Q Consensus 31 ikl~-~S~~~~~Krl~YL~l~~~~~~~~------e~~~L~~Nsl~kDL~s~n~~vr~l---ALr~l~~i~~~el----~~ 96 (530)
.+.+ ..++...+..+--++..++..-. .....+...+..=+.+..+.++.- ||.+++.-.+|.. .+
T Consensus 66 ~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~ 145 (249)
T 2qk1_A 66 GHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE 145 (249)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH
Confidence 3466 57788888888888888764221 344566777877788888888655 5556665444322 56
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh
Q psy4020 97 DLASEVERLMKSSNAYIRKKAALCAYRIILKVPE 130 (530)
Q Consensus 97 ~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~ 130 (530)
.+.+.+...+.|++|.||..|+.++.++....+.
T Consensus 146 ~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 146 DMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999999988763
No 71
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0029 Score=70.28 Aligned_cols=212 Identities=15% Similarity=0.161 Sum_probs=142.4
Q ss_pred HHHHHHhhcCCCChhhhhHHHHHHhcCCChh-----hH-HHHHHHHHHHhcCCCHH---HHHHHHHHHHHHHh-hChhhH
Q psy4020 63 ITNSLKNDLNSSTQFVVGLALCTLGAIASPE-----MS-RDLASEVERLMKSSNAY---IRKKAALCAYRIIL-KVPELM 132 (530)
Q Consensus 63 ~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~e-----l~-~~l~~~V~~~l~~~~~y---VRK~A~la~~ki~~-~~p~~i 132 (530)
++..|..-+.++++.+|..|.+.|.++.... ++ +-..+.+.+.+.+.++. +|..|+-|+.++.- .+|+.+
T Consensus 458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~ 537 (778)
T 3opb_A 458 LISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLI 537 (778)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHH
Confidence 6677778888999999999999999987532 23 34568888999888665 89999999999974 456654
Q ss_pred ------HhhHHHHHHhcCC-CC-Cc--------c---hHHHHHHHHHhhcCCC-h---hhHHH------HHHHHHHHhhc
Q psy4020 133 ------EIFLPATRLLLSD-KN-HA--------I---HQVKILKLLRILGKND-V---EASEA------MNDILAQVATN 183 (530)
Q Consensus 133 ------~~~i~~l~~lL~d-~n-~~--------V---~qi~iL~lL~~l~~~~-~---~~~~~------l~~iL~~~l~~ 183 (530)
...++.|.++|.. .+ .+ + .+...+..|..++..+ + +.... .+..|..++.+
T Consensus 538 f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s 617 (778)
T 3opb_A 538 FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD 617 (778)
T ss_dssp SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC
T ss_pred cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC
Confidence 2578899999972 11 11 1 2446677777776543 1 22222 23334444432
Q ss_pred ccCCCCCcchhHHHHHHHHhccCCChHHH---------HH---HHHHHHHhccCCCchhHHHHHHHHHHHhccChHHH--
Q psy4020 184 TETSKNVGNTILYETVLSIMDIKSESGLR---------VL---AVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAV-- 249 (530)
Q Consensus 184 ~~~~~n~~~aV~~eai~~i~~l~~~~~l~---------~~---~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~-- 249 (530)
.+..|.-+|+.+++++..+++-+ .. -+..|..++.+.|..+|..|...|..+...+|...
T Consensus 618 ------~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ 691 (778)
T 3opb_A 618 ------ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKE 691 (778)
T ss_dssp ------SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHH
Confidence 15578888888888876544311 01 25678888888899999999988888866565432
Q ss_pred --H--HHHHHHhhhccC--CcHHHHHHHHHHHHhccC
Q psy4020 250 --Q--RHRNTILECLKD--PDVSIRRRALELSFALVN 280 (530)
Q Consensus 250 --~--~~~~~i~~~l~d--~d~~Ir~~aL~ll~~l~n 280 (530)
+ +-...++..+.+ +|..++.+++-++++|+.
T Consensus 692 ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 692 LLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 1 223445566666 788888888888888875
No 72
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.44 E-value=0.00013 Score=63.19 Aligned_cols=116 Identities=11% Similarity=0.031 Sum_probs=79.3
Q ss_pred HHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhc
Q psy4020 64 TNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLL 143 (530)
Q Consensus 64 ~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL 143 (530)
.+.+.+.|+|+++.+|..|+..|+.+..+. .+.+.+.+.|+++.||..|+.++.++- .+ ..++.+.++|
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~--~~----~a~~~L~~~L 82 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQ--DE----RAVEPLIKLL 82 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGC--SH----HHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcC--CH----HHHHHHHHHH
Confidence 466788899999999999999999999875 377788999999999999999998763 23 3466667777
Q ss_pred CCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHh
Q psy4020 144 SDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIM 203 (530)
Q Consensus 144 ~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~ 203 (530)
.|.|+.| .......|..++ +++. .+.|...+.. .+..|...|+..+-
T Consensus 83 ~d~~~~V-R~~A~~aL~~~~--~~~a----~~~L~~~l~d------~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 83 EDDSGFV-RSGAARSLEQIG--GERV----RAAMEKLAET------GTGFARKVAVNYLE 129 (131)
T ss_dssp HHCCTHH-HHHHHHHHHHHC--SHHH----HHHHHHHTTS------CCTHHHHHHHHHGG
T ss_pred cCCCHHH-HHHHHHHHHHhC--cHHH----HHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 7888877 345566666665 3332 3344444432 25568888777654
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.43 E-value=0.021 Score=64.82 Aligned_cols=232 Identities=14% Similarity=0.100 Sum_probs=145.5
Q ss_pred CchhHHHHHHHHhhc--cCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcC----CChhhHHHHHHHHHHHhcCCCHH
Q psy4020 39 FTDKRIGYLGAMLLL--DERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAI----ASPEMSRDLASEVERLMKSSNAY 112 (530)
Q Consensus 39 ~~~Krl~YL~l~~~~--~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i----~~~el~~~l~~~V~~~l~~~~~y 112 (530)
-..++-+-|++.... ..++|+.-...+.+. +.++..+..|--+|+.+ ++.+.++.+..... .+.+..
T Consensus 451 ~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~----dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~e~ 523 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSANIEVYEALKEVLY----NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQHGN 523 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSCHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCcHH
Confidence 346666777887754 345565544444444 34556665555555654 67777777766544 466789
Q ss_pred HHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHH-HHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCc
Q psy4020 113 IRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKIL-KLLRILGKNDVEASEAMNDILAQVATNTETSKNVG 191 (530)
Q Consensus 113 VRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL-~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~ 191 (530)
|||.|++|+..++-..++.++..++.+.. +.|+.+---.++ --+...+..++...+.++. .+.+.. +
T Consensus 524 vrR~aalgLGll~~g~~e~~~~li~~L~~---~~dp~vRygaa~alglAyaGTGn~~aIq~LL~---~~~~d~------~ 591 (963)
T 4ady_A 524 ITRGLAVGLALINYGRQELADDLITKMLA---SDESLLRYGGAFTIALAYAGTGNNSAVKRLLH---VAVSDS------N 591 (963)
T ss_dssp HHHHHHHHHHHHTTTCGGGGHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHH---HHHHCS------C
T ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH---HhccCC------c
Confidence 99999999999988888888777665553 556655221112 2233345566554443333 333321 3
Q ss_pred chhHHHHHHHHhc--cCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccCh--HHHHHHHHHHhhhccCCcHHH
Q psy4020 192 NTILYETVLSIMD--IKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDT--SAVQRHRNTILECLKDPDVSI 267 (530)
Q Consensus 192 ~aV~~eai~~i~~--l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p--~~~~~~~~~i~~~l~d~d~~I 267 (530)
.-|.-.|+..+-- +.. ++ .+...+..+..+.++++||-+-..|..+....| +++ ..+..+..|+|..+
T Consensus 592 d~VRraAViaLGlI~~g~-~e---~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~ai----d~L~~L~~D~d~~V 663 (963)
T 4ady_A 592 DDVRRAAVIALGFVLLRD-YT---TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAI----DVLDPLTKDPVDFV 663 (963)
T ss_dssp HHHHHHHHHHHHHHTSSS-CS---SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHH----HHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHhhccCC-HH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHH----HHHHHHccCCCHHH
Confidence 3465556555433 332 22 222333334467899999999999999876555 333 34455678999999
Q ss_pred HHHHHHHHHhcc---Chh---hHHHHHHHHHHHhhh
Q psy4020 268 RRRALELSFALV---NSA---NVRSMMKELLIFLEK 297 (530)
Q Consensus 268 r~~aL~ll~~l~---n~~---Nv~~Iv~eL~~yl~~ 297 (530)
|+-|+.-|-.+. |+. .+..+.+.|..|..+
T Consensus 664 rq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 664 RQAAMIALSMILIQQTEKLNPQVADINKNFLSVITN 699 (963)
T ss_dssp HHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhc
Confidence 999887777665 333 588888999999875
No 74
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.40 E-value=0.0084 Score=59.55 Aligned_cols=138 Identities=12% Similarity=0.022 Sum_probs=82.3
Q ss_pred hHHHHH-hhcCCCCchhHHHHHHHHhhccCChhHHHH-----HHHHHHhhcC-CCChhhhhHHHHHHhcCC--ChhhH--
Q psy4020 27 QLECLK-LIASSRFTDKRIGYLGAMLLLDERQDVHLL-----ITNSLKNDLN-SSTQFVVGLALCTLGAIA--SPEMS-- 95 (530)
Q Consensus 27 ~~~vik-l~~S~~~~~Krl~YL~l~~~~~~~~e~~~L-----~~Nsl~kDL~-s~n~~vr~lALr~l~~i~--~~el~-- 95 (530)
...+++ ++.|++...|.-+--++..++..+++.--. ++..|.+=|+ ++++.+|..|+.+|+++. .+...
T Consensus 83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~ 162 (296)
T 1xqr_A 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 162 (296)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 344666 777777777777777777766655542111 2233333343 346677777777777763 23221
Q ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCC
Q psy4020 96 ---RDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-----IFLPATRLLLSDKNHAIHQVKILKLLRILGKN 165 (530)
Q Consensus 96 ---~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~ 165 (530)
...++.+.++|.++++-||++|+.++..+....|+..+ .+++.+.++|...++.| |...++.|..+...
T Consensus 163 ~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v-~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 163 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPF-HEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTH-HHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhH-HHHHHHHHHHHHhC
Confidence 12556667777777777777777777777666665443 35667777777666655 44555555555444
No 75
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.39 E-value=0.039 Score=50.37 Aligned_cols=195 Identities=14% Similarity=0.116 Sum_probs=130.6
Q ss_pred hhhhhHHHHHHhcCC--ChhhHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchH
Q psy4020 76 QFVVGLALCTLGAIA--SPEMSRDLASEVERLMKSSNA-YIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQ 152 (530)
Q Consensus 76 ~~vr~lALr~l~~i~--~~el~~~l~~~V~~~l~~~~~-yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~q 152 (530)
=.++.+||+.++.+. -|++.+++...+.-.+.-+.. -.-..-+-++..+.+..||+++..+|.+..=+.-.++.. .
T Consensus 46 wtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfanyrigd~ki-k 124 (253)
T 2db0_A 46 WTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKT-K 124 (253)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSHHH-H
T ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCCccc-e
Confidence 358889999888876 478888777777766554422 222444556677777889999988888887665555532 3
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCC-hHHHHHHHHHHHHhccCCCchhH
Q psy4020 153 VKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSE-SGLRVLAVNILGRFLLNNDKNIR 231 (530)
Q Consensus 153 i~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~-~~l~~~~v~~L~~lL~s~d~nir 231 (530)
+.+--.|....+.+|+......+-+..++++. +..=-..|.+.|-.++.+ .....-...+|..+|.++|.-+|
T Consensus 125 In~~yaLeeIaranP~l~~~v~rdi~smltsk------d~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVR 198 (253)
T 2db0_A 125 INVSYALEEIAKANPMLMASIVRDFMSMLSSK------NREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVR 198 (253)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCS------SHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHH
T ss_pred ecHHHHHHHHHHhChHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhh
Confidence 33444556666667776544444444445432 455566677777777654 33334445677788888888899
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhc
Q psy4020 232 YVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFAL 278 (530)
Q Consensus 232 y~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l 278 (530)
-.+.++|..++..+|. +.+-....+.-++|...-+..+.-+-+.++
T Consensus 199 aSaVEtL~~lA~~npk-lRkii~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 199 ASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp HHHHHHHHHHHTSCHH-HHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 9999999999999998 566666677777887766666655555443
No 76
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.35 E-value=0.017 Score=66.51 Aligned_cols=91 Identities=14% Similarity=0.086 Sum_probs=73.2
Q ss_pred CCCCchhHHHHHHHHhhccC--------Ch-----hHHHHHHHHHHhhcCCC---ChhhhhHHHHHHhcCCC---hhhHH
Q psy4020 36 SSRFTDKRIGYLGAMLLLDE--------RQ-----DVHLLITNSLKNDLNSS---TQFVVGLALCTLGAIAS---PEMSR 96 (530)
Q Consensus 36 S~~~~~Krl~YL~l~~~~~~--------~~-----e~~~L~~Nsl~kDL~s~---n~~vr~lALr~l~~i~~---~el~~ 96 (530)
+++...|..+++++..++.. .+ ++.-+..+.+..+++++ +|++|+.|+.+++.+++ ++..+
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~ 495 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI 495 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH
Confidence 66778888999988887532 11 55555566777777777 99999999999998864 57888
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q psy4020 97 DLASEVERLMKSSNAYIRKKAALCAYRIIL 126 (530)
Q Consensus 97 ~l~~~V~~~l~~~~~yVRK~A~la~~ki~~ 126 (530)
.+.+.+.+++.|+++-||..|+.|+.++..
T Consensus 496 ~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 496 ELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999876
No 77
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.25 E-value=0.059 Score=56.59 Aligned_cols=118 Identities=10% Similarity=-0.010 Sum_probs=83.8
Q ss_pred chHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHH-----HHHHHhhcC-CCChhhhhHHHHHHhcCCCh-----hh
Q psy4020 26 GQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLI-----TNSLKNDLN-SSTQFVVGLALCTLGAIASP-----EM 94 (530)
Q Consensus 26 ~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~-----~Nsl~kDL~-s~n~~vr~lALr~l~~i~~~-----el 94 (530)
+....++++.+++...++-+--++..+...+++.-..+ +..|.+=|. ++++.++-.|..+|+++... .+
T Consensus 45 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i 124 (457)
T 1xm9_A 45 GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124 (457)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHH
Confidence 44568889999999999988888888887655543333 556777777 78899998888888877642 24
Q ss_pred HHHHHHHHHHHhc--------C--------CCHHHHHHHHHHHHHHHhhChhhHH------hhHHHHHHhcC
Q psy4020 95 SRDLASEVERLMK--------S--------SNAYIRKKAALCAYRIILKVPELME------IFLPATRLLLS 144 (530)
Q Consensus 95 ~~~l~~~V~~~l~--------~--------~~~yVRK~A~la~~ki~~~~p~~i~------~~i~~l~~lL~ 144 (530)
++..++.+.+++. + .++.|.+.|+-|+..+... |+... ..++.+..+|.
T Consensus 125 ~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~ 195 (457)
T 1xm9_A 125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQ 195 (457)
T ss_dssp HHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHH
T ss_pred HhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHH
Confidence 4567788888883 2 3567888999999988764 55322 45666666664
No 78
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.25 E-value=0.025 Score=57.56 Aligned_cols=204 Identities=12% Similarity=0.056 Sum_probs=136.4
Q ss_pred CchhHHHHHHHHhhccCChhHH--H----HHHHHHHhhcCCCChhhhhHHHHHHhcCCC---hhhHH-----HHHHHHHH
Q psy4020 39 FTDKRIGYLGAMLLLDERQDVH--L----LITNSLKNDLNSSTQFVVGLALCTLGAIAS---PEMSR-----DLASEVER 104 (530)
Q Consensus 39 ~~~Krl~YL~l~~~~~~~~e~~--~----L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~---~el~~-----~l~~~V~~ 104 (530)
.+.|+-+--++..+...+++.- + =++..|.+=|.++++.++..|..+|.++.. ++.-. ..++.+.+
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~ 177 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence 4567777777777776554321 1 136788888899999998887777766643 33222 24677777
Q ss_pred H-hcCCCHHHHHHHHHHHHHHHhhChh----hH--HhhHHHHHHhcCCCCCc--c-hHHHHHHHHHhhcC---CChhhHH
Q psy4020 105 L-MKSSNAYIRKKAALCAYRIILKVPE----LM--EIFLPATRLLLSDKNHA--I-HQVKILKLLRILGK---NDVEASE 171 (530)
Q Consensus 105 ~-l~~~~~yVRK~A~la~~ki~~~~p~----~i--~~~i~~l~~lL~d~n~~--V-~qi~iL~lL~~l~~---~~~~~~~ 171 (530)
+ +.+.++-+++.|+-++..+....++ ++ ...++.+.++|.+.+.. + .+......|+.++. .+++..+
T Consensus 178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~ 257 (354)
T 3nmw_A 178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 257 (354)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 6 4667899999999999888764433 33 25789999999876653 1 23334444554443 4555444
Q ss_pred HHH-----HHHHHHhhcccCCCCCcchhHHHHHHHHhccCC-ChHHHH-----HHHHHHHHhccCCCchhHHHHHHHHHH
Q psy4020 172 AMN-----DILAQVATNTETSKNVGNTILYETVLSIMDIKS-ESGLRV-----LAVNILGRFLLNNDKNIRYVALNTLLR 240 (530)
Q Consensus 172 ~l~-----~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~-~~~l~~-----~~v~~L~~lL~s~d~niry~aL~~L~~ 240 (530)
.+. ..|-.++.+ .+..+.-+|+.++.++.. +++.++ .++..|..+|.+++..+|-.+...|..
T Consensus 258 ~i~~~g~i~~Lv~lL~~------~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~n 331 (354)
T 3nmw_A 258 ILRENNCLQTLLQHLKS------HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331 (354)
T ss_dssp HHHTTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcC------CChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 332 334444443 256799999999998873 443332 346788899988999999999999999
Q ss_pred HhccChHH
Q psy4020 241 TVYIDTSA 248 (530)
Q Consensus 241 l~~~~p~~ 248 (530)
|....|..
T Consensus 332 L~~~~~~~ 339 (354)
T 3nmw_A 332 LMANRPAK 339 (354)
T ss_dssp HHTTCCGG
T ss_pred HHcCCHHH
Confidence 98877754
No 79
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.048 Score=60.63 Aligned_cols=160 Identities=17% Similarity=0.153 Sum_probs=105.3
Q ss_pred hHHHHHHHHhcc--CCChHHH------HHHHHHHHHhccC-CCc------------hh-HHHHHHHHHHHhccC------
Q psy4020 194 ILYETVLSIMDI--KSESGLR------VLAVNILGRFLLN-NDK------------NI-RYVALNTLLRTVYID------ 245 (530)
Q Consensus 194 V~~eai~~i~~l--~~~~~l~------~~~v~~L~~lL~s-~d~------------ni-ry~aL~~L~~l~~~~------ 245 (530)
+-..|+.++.++ +.+|.+. ..++.+|..+|.. .+. .+ +|-||..|..|+...
T Consensus 517 ~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~ 596 (778)
T 3opb_A 517 IRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEE 596 (778)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchH
Confidence 455666666554 2333331 1466788888862 111 12 899999999998764
Q ss_pred -hH-HHH--HHHHHHhhhccCCcHHHHHHHHHHHHhccChhh-H-HHH-----------HHHHHHHhhhcCchhhhhhHH
Q psy4020 246 -TS-AVQ--RHRNTILECLKDPDVSIRRRALELSFALVNSAN-V-RSM-----------MKELLIFLEKSEPDFKAHCSS 308 (530)
Q Consensus 246 -p~-~~~--~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~N-v-~~I-----------v~eL~~yl~~~d~~~~~~~i~ 308 (530)
.. ++. .....+..++.+++..||+.|.+++.+|+...- + ..+ ++-|..++...|.+.|+.+.-
T Consensus 597 ~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAag 676 (778)
T 3opb_A 597 VCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAA 676 (778)
T ss_dssp HHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHH
Confidence 12 343 357788888888889999999999999885442 2 122 456778887788999999999
Q ss_pred HHHHHHHhhCCCch------hHHHHHHHHHHHhhhhhhcchhhhHHHHHHH-HHHhh
Q psy4020 309 NIVLCAERFAPNKR------WHLDTLLKVLVANLLGFSNRALRDQRRALEL-SFALV 358 (530)
Q Consensus 309 ~I~~la~k~~~~~~------~~vd~Ll~lL~~~~~~~v~~a~eiq~~a~e~-~~ll~ 358 (530)
+++.++.-++.... ..++.+++++..- .+-.++|.|++.+ .+++.
T Consensus 677 ALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~-----~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 677 IFANIATTIPLIAKELLTKKELIENAIQVFADQ-----IDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCChHHHHHHHHccccHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHH
Confidence 99988765543222 3456677777751 1234677777644 56664
No 80
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.13 E-value=0.096 Score=56.90 Aligned_cols=191 Identities=14% Similarity=0.153 Sum_probs=132.3
Q ss_pred HhhcCCCCchhHHHHHHHHhhccCChhH-----HHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChh-------------
Q psy4020 32 KLIASSRFTDKRIGYLGAMLLLDERQDV-----HLLITNSLKNDLNSSTQFVVGLALCTLGAIASPE------------- 93 (530)
Q Consensus 32 kl~~S~~~~~Krl~YL~l~~~~~~~~e~-----~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~e------------- 93 (530)
++-.+.-+++||-+-+++..+.+..++. +--.++++++|-. +..+...+|.+|.++-.++
T Consensus 29 Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~--D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~ 106 (651)
T 3grl_A 29 RVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRS--DSEIIGYALDTLYNIISNDEEEEVEENSTRQS 106 (651)
T ss_dssp HHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTT--CHHHHHHHHHHHHHHHCCC-------------
T ss_pred HHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccc--cHHHHHHHHHHHHHHhCCCCcccccccccccc
Confidence 4667888999999999999999877653 3457899999963 4455556999987654321
Q ss_pred ------hH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-------hhHHHHHHhcCCCCCcchHHH
Q psy4020 94 ------MS------RDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME-------IFLPATRLLLSDKNHAIHQVK 154 (530)
Q Consensus 94 ------l~------~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-------~~i~~l~~lL~d~n~~V~qi~ 154 (530)
++ +.-++.+..+|.+.+.|||-.|+-++..+....|+... .-++.+.++|.|. ..+++-.
T Consensus 107 ~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRne 185 (651)
T 3grl_A 107 EDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-REVIRND 185 (651)
T ss_dssp -CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHH
T ss_pred hHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHH
Confidence 11 23366778889999999999999999999999998554 3578899999886 4566888
Q ss_pred HHHHHHhhcCCChhhHHH-----HHHHHHHHhhcccCCCCCcchhHHHHHHHHhccC-CC---hHHHH--HHHHHHHHhc
Q psy4020 155 ILKLLRILGKNDVEASEA-----MNDILAQVATNTETSKNVGNTILYETVLSIMDIK-SE---SGLRV--LAVNILGRFL 223 (530)
Q Consensus 155 iL~lL~~l~~~~~~~~~~-----l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~-~~---~~l~~--~~v~~L~~lL 223 (530)
.+-+|..+.+.+++..+. -.+.|..++...... .+..|+-.|..++.++- .+ ..+.+ .++..|..+|
T Consensus 186 allLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~--~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL 263 (651)
T 3grl_A 186 GVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNS--DGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF 263 (651)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGG--GSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCC--ccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHh
Confidence 888999999998875432 134444444432111 24568888888776652 22 23222 3456677777
Q ss_pred cCCC
Q psy4020 224 LNND 227 (530)
Q Consensus 224 ~s~d 227 (530)
..++
T Consensus 264 ~~~~ 267 (651)
T 3grl_A 264 EVGD 267 (651)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 5433
No 81
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.05 E-value=0.051 Score=57.25 Aligned_cols=203 Identities=12% Similarity=0.057 Sum_probs=134.0
Q ss_pred CchhHHHHHHHHhhccCChhHH--H----HHHHHHHhhcCCCChhhhhHHHHHHhcCCC---hhhHH-----HHHHHHHH
Q psy4020 39 FTDKRIGYLGAMLLLDERQDVH--L----LITNSLKNDLNSSTQFVVGLALCTLGAIAS---PEMSR-----DLASEVER 104 (530)
Q Consensus 39 ~~~Krl~YL~l~~~~~~~~e~~--~----L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~---~el~~-----~l~~~V~~ 104 (530)
...++-+--++..+...+++.- + =++..|.+=|.++++.++..|..+|+++.. ++.-. ..++.+.+
T Consensus 214 ~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~ 293 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 293 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHH
Confidence 3456666666666665554321 1 136788888899999999988888877754 33222 24677777
Q ss_pred H-hcCCCHHHHHHHHHHHHHHHhhChh----hH--HhhHHHHHHhcCCCCCc--c-hHHHHHHHHHhhcC---CChhhHH
Q psy4020 105 L-MKSSNAYIRKKAALCAYRIILKVPE----LM--EIFLPATRLLLSDKNHA--I-HQVKILKLLRILGK---NDVEASE 171 (530)
Q Consensus 105 ~-l~~~~~yVRK~A~la~~ki~~~~p~----~i--~~~i~~l~~lL~d~n~~--V-~qi~iL~lL~~l~~---~~~~~~~ 171 (530)
+ +.+.++-+++.|+-++..+....++ ++ ...++.+.++|...+.. + .+......|+.++. .+++..+
T Consensus 294 lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~ 373 (458)
T 3nmz_A 294 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 373 (458)
T ss_dssp HHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 6 4557899999999999888774433 33 25788999999876543 1 23334444544443 4555444
Q ss_pred HHH-----HHHHHHhhcccCCCCCcchhHHHHHHHHhccCC-ChHHHH-----HHHHHHHHhccCCCchhHHHHHHHHHH
Q psy4020 172 AMN-----DILAQVATNTETSKNVGNTILYETVLSIMDIKS-ESGLRV-----LAVNILGRFLLNNDKNIRYVALNTLLR 240 (530)
Q Consensus 172 ~l~-----~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~-~~~l~~-----~~v~~L~~lL~s~d~niry~aL~~L~~ 240 (530)
.+. ..|..++.+ .+..+.-+|+.++.++.. +++... .++..|..+|.+++..+|-.+...|..
T Consensus 374 ~i~~~G~i~~Lv~LL~~------~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~n 447 (458)
T 3nmz_A 374 ILRENNCLQTLLQHLKS------HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447 (458)
T ss_dssp HHHHTTHHHHHHHHSSC------SCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHcC------CChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 443 233344442 255689999999988863 443322 346778888888899999999999999
Q ss_pred HhccChH
Q psy4020 241 TVYIDTS 247 (530)
Q Consensus 241 l~~~~p~ 247 (530)
|+..+|.
T Consensus 448 L~~~~p~ 454 (458)
T 3nmz_A 448 LMANRPA 454 (458)
T ss_dssp HHTCCSC
T ss_pred HHcCCHh
Confidence 9887764
No 82
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.89 E-value=0.13 Score=59.22 Aligned_cols=213 Identities=11% Similarity=0.098 Sum_probs=121.0
Q ss_pred CCCCchhHHHHHHHHhhccCChhHHH-HHHHHHHhhcC------CCChhhhhHHHHHHhcCCC---------h------h
Q psy4020 36 SSRFTDKRIGYLGAMLLLDERQDVHL-LITNSLKNDLN------SSTQFVVGLALCTLGAIAS---------P------E 93 (530)
Q Consensus 36 S~~~~~Krl~YL~l~~~~~~~~e~~~-L~~Nsl~kDL~------s~n~~vr~lALr~l~~i~~---------~------e 93 (530)
+.....|+.+.-.+..++...++..+ .+.+.+..=++ +++-..|-.|+..++.+.. . +
T Consensus 372 ~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 372 SDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp ----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred ccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 34456777777777777765554322 23333333332 4566788888887777631 1 4
Q ss_pred hHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhh-ChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCC-C--
Q psy4020 94 MSRDLASEVERLMKSS---NAYIRKKAALCAYRIILK-VPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKN-D-- 166 (530)
Q Consensus 94 l~~~l~~~V~~~l~~~---~~yVRK~A~la~~ki~~~-~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~-~-- 166 (530)
+.+.+...|...+.++ +|+||.+|+.++.++... .|+..+..++.+...|.|.++.| +...-..|..++.. +
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V-~~~A~~Al~~~~~~~~~~ 530 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVV-YTYAAITIEKILTIRESN 530 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHHTTCBSCS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhH-HHHHHHHHHHHHhccccc
Confidence 5555566777788887 999999999999988665 45667778888888888766544 56666666665542 1
Q ss_pred --------hh----hHHHHHHHHHHHhhccc--CCCCCcchhHHHHHHHHhcc-CC--Ch---HHHHHHHHHHHHhcc-C
Q psy4020 167 --------VE----ASEAMNDILAQVATNTE--TSKNVGNTILYETVLSIMDI-KS--ES---GLRVLAVNILGRFLL-N 225 (530)
Q Consensus 167 --------~~----~~~~l~~iL~~~l~~~~--~~~n~~~aV~~eai~~i~~l-~~--~~---~l~~~~v~~L~~lL~-s 225 (530)
++ ..+.+++.|..++.... ..+......+++|+..++.. .. .+ .+.....+.+..... .
T Consensus 531 ~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~ 610 (960)
T 1wa5_C 531 TSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNP 610 (960)
T ss_dssp SSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSC
T ss_pred ccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 11 12334444444444320 00001234667777766542 21 12 233333344443333 2
Q ss_pred CCchhHHHHHHHHHHHhcc-ChHHH
Q psy4020 226 NDKNIRYVALNTLLRTVYI-DTSAV 249 (530)
Q Consensus 226 ~d~niry~aL~~L~~l~~~-~p~~~ 249 (530)
+++..+...++++..++.. .|+.+
T Consensus 611 ~~~~~~~~~~e~l~~l~~~~~~~~~ 635 (960)
T 1wa5_C 611 SNPRFTHYTFESIGAILNYTQRQNL 635 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCcHHHHHHHHHHHHHHhcCCcchH
Confidence 4556777788998888775 55433
No 83
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=96.84 E-value=0.0084 Score=58.67 Aligned_cols=96 Identities=17% Similarity=0.245 Sum_probs=73.2
Q ss_pred eEEEeCCCcEEEEEeecCCCCCCeEEEEEEEeeCCcccccceEEEEeecC----ceEEEeeCCCCCCCCCCCCceEEEEE
Q psy4020 423 VKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPK----TFQLQMLPPSDTNIPPGSQVTQTLRV 498 (530)
Q Consensus 423 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK----~~~l~l~p~Sg~~l~~~~~itQ~~~i 498 (530)
=..|+++-|+|-+...-. .+...+.++|.|.++.+|++|+.++.-|+ .+.++.+|.. ++++|+..+.|.+.+
T Consensus 49 GVLyED~~IQIg~kse~~---~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~~~~~-~tI~p~~q~qq~i~v 124 (273)
T 3hs8_A 49 GVLFENQLLQIGLKSEFR---QNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVD-PTVDGGAQVQQVVNI 124 (273)
T ss_dssp EEEEECSSEEEEEEEEEE---TTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEEEECCCC-SCBCTTCEEEEEEEE
T ss_pred cEEEeCCcEEEEEEEEEe---CceEEEEEEEEcCCCCcceeEEEEEECCCCCCcceEEEecCCC-CeECCCCEEEEEEEE
Confidence 457899999999876543 35689999999999999999999998877 6788888665 789888888899887
Q ss_pred EecCCCCCcceeEEEEEEEEECCeeee
Q psy4020 499 AKANNNVQASLRMRIKVSYNVNGTFIQ 525 (530)
Q Consensus 499 ~~~~~~~~~~~~lr~k~~y~~~~~~~~ 525 (530)
. ...|-.++- -++++|..+|....
T Consensus 125 ~-~~~pF~~~P--~l~isf~~~g~~~~ 148 (273)
T 3hs8_A 125 E-CISDFTEAP--VLNIQFRYGGTFQN 148 (273)
T ss_dssp E-ECSCCCCCC--EEEEEEEETTEEEE
T ss_pred E-EcccccCCC--EEEEEEEECCeEEE
Confidence 1 122433322 37788888987543
No 84
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.69 E-value=0.23 Score=53.86 Aligned_cols=252 Identities=14% Similarity=0.031 Sum_probs=152.4
Q ss_pred HHHHHHhhcCCCChhhhhHHHHHHhcCC--Chh----hHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-ChhhH--
Q psy4020 63 ITNSLKNDLNSSTQFVVGLALCTLGAIA--SPE----MSRD-LASEVERLMKSSNAYIRKKAALCAYRIILK-VPELM-- 132 (530)
Q Consensus 63 ~~Nsl~kDL~s~n~~vr~lALr~l~~i~--~~e----l~~~-l~~~V~~~l~~~~~yVRK~A~la~~ki~~~-~p~~i-- 132 (530)
.+..+.+-|.++++.++..|..+|.++. +++ +++. .++.+.++|.++++.|+..|+-|+..+... +++--
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~ 128 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIA 128 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 3455666778899988888888887776 333 2322 568999999999999999999999999763 34422
Q ss_pred --H-hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHH----HHHHHHHhh---cc--cC------CC-CCcch
Q psy4020 133 --E-IFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAM----NDILAQVAT---NT--ET------SK-NVGNT 193 (530)
Q Consensus 133 --~-~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l----~~iL~~~l~---~~--~~------~~-n~~~a 193 (530)
+ ..++.+.++|.+.+..-.|-.....|..+... ++.+..+ +..|.+++. +. .. .+ .....
T Consensus 129 I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~ 207 (584)
T 3l6x_A 129 IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207 (584)
T ss_dssp HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence 1 46888999998643322355555566666553 3322222 223333221 00 00 00 11357
Q ss_pred hHHHHHHHHhccCCC-hHHHHHH------HHHHHHhccC------CCchhHHHHHHHHHHHhccC---------------
Q psy4020 194 ILYETVLSIMDIKSE-SGLRVLA------VNILGRFLLN------NDKNIRYVALNTLLRTVYID--------------- 245 (530)
Q Consensus 194 V~~eai~~i~~l~~~-~~l~~~~------v~~L~~lL~s------~d~niry~aL~~L~~l~~~~--------------- 245 (530)
|...|+.++.+++.. +..++.+ +..|..+|.+ .+...+--++..|..|....
T Consensus 208 V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~ 287 (584)
T 3l6x_A 208 VLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAP 287 (584)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcc
Confidence 889999999998764 2323322 3466666642 23344444555554443210
Q ss_pred ----------hHHH----H-HHHHHHhhhcc-CCcHHHHHHHHHHHHhccChh-----hHH------HHHHHHHHHhhhc
Q psy4020 246 ----------TSAV----Q-RHRNTILECLK-DPDVSIRRRALELSFALVNSA-----NVR------SMMKELLIFLEKS 298 (530)
Q Consensus 246 ----------p~~~----~-~~~~~i~~~l~-d~d~~Ir~~aL~ll~~l~n~~-----Nv~------~Iv~eL~~yl~~~ 298 (530)
+.-+ + .-...++.++. ..+..++..|...|.+||..+ .+. ..+.-|.+.+...
T Consensus 288 ~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~ 367 (584)
T 3l6x_A 288 NVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE 367 (584)
T ss_dssp --------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS
T ss_pred cccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC
Confidence 0000 0 01122334453 456889999999999997432 222 3356677777777
Q ss_pred CchhhhhhHHHHHHHHH
Q psy4020 299 EPDFKAHCSSNIVLCAE 315 (530)
Q Consensus 299 d~~~~~~~i~~I~~la~ 315 (530)
+.+.++.++.+++.++.
T Consensus 368 ~~~v~~~A~~aL~nLs~ 384 (584)
T 3l6x_A 368 HERVVKAASGALRNLAV 384 (584)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 88899999999999986
No 85
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.027 Score=54.92 Aligned_cols=171 Identities=11% Similarity=0.036 Sum_probs=99.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH---------hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCC---C---
Q psy4020 102 VERLMKSSNAYIRKKAALCAYRIILKVPELME---------IFLPATRLLLSDKNHAIHQVKILKLLRILGKN---D--- 166 (530)
Q Consensus 102 V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~---------~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~---~--- 166 (530)
+...|.|++.-.|+.|+-.+.+++...|.... .+.+.+...+.|.|..|. ...++++..+... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~-~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQ-EQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHH-HHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHH-HHHHHHHHHHHHHhhhhhcc
Confidence 44688999999999999999999987654321 235567788899998873 3445555544321 1
Q ss_pred -hhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHH---HHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHh
Q psy4020 167 -VEASEAMNDILAQVATNTETSKNVGNTILYETVL---SIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTV 242 (530)
Q Consensus 167 -~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~---~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~ 242 (530)
.........++..++.....+ ....+.-.|.. .++...... ..+...+...+.++.|.+|--++..|..++
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~--~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTS--SRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSC--CCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcC--ccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 111111222333333321111 12334333333 333333322 124456777788889999999999998887
Q ss_pred ccC------hHH-HHHHHHHHhhhccCCcHHHHHHHHHHHHhc
Q psy4020 243 YID------TSA-VQRHRNTILECLKDPDVSIRRRALELSFAL 278 (530)
Q Consensus 243 ~~~------p~~-~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l 278 (530)
..+ +.. +......+..++.|.|..||..|.+++..+
T Consensus 168 ~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp HHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 642 221 222233345577889999999998887543
No 86
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=96.31 E-value=0.052 Score=52.31 Aligned_cols=93 Identities=17% Similarity=0.267 Sum_probs=72.0
Q ss_pred EEEeCCCcEEEEEeecCCCCCCeEEEEEEEeeCCcccccceEEEEeecC----ceEEEeeCCCCCCCCCCCCceEEEEEE
Q psy4020 424 KAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPK----TFQLQMLPPSDTNIPPGSQVTQTLRVA 499 (530)
Q Consensus 424 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK----~~~l~l~p~Sg~~l~~~~~itQ~~~i~ 499 (530)
..|+++-|+|-+...-. .+...+.++|.|.++.++++|+..+..|. .+.++.+|.. .+++|+..+.|.+.+
T Consensus 24 VLyEd~~iQIg~kse~~---~~~gri~l~~gNKs~~~l~~f~~~i~~~~~~~~~l~~~~~~~~-~~I~~~~q~qq~i~v- 98 (247)
T 1kyf_A 24 VLFENQLLQIGLKSEFR---QNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVD-PTVDGGAQVQQVVNI- 98 (247)
T ss_dssp EEEECSSEEEEEEEEEE---TTEEEEEEEEEECSSSCBEEEEEEEECCHHHHHHEEEEECCCC-SCBCTTCEEEEEEEE-
T ss_pred EEEECCCEEEEEEEEEe---CCeEEEEEEEEcCCCCceeeEEEEEecCcccCCCeeEecCCCC-ceeCCCcEEEEEEEE-
Confidence 47899999998866643 34679999999999999999999998886 4777777753 468988889999988
Q ss_pred ecCC--CCCcceeEEEEEEEEECCeeee
Q psy4020 500 KANN--NVQASLRMRIKVSYNVNGTFIQ 525 (530)
Q Consensus 500 ~~~~--~~~~~~~lr~k~~y~~~~~~~~ 525 (530)
.. |-.++- .++++|..+|....
T Consensus 99 --~~~~~f~~~P--~l~isf~~~g~~~~ 122 (247)
T 1kyf_A 99 --ECISDFTEAP--VLNIQFRYGGTFQN 122 (247)
T ss_dssp --EECSCCCCCC--EEEEEEEETTEEEE
T ss_pred --EEccccCCCC--EEEEEEEECCeeeE
Confidence 43 333332 37889999987654
No 87
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.91 E-value=0.19 Score=58.33 Aligned_cols=147 Identities=7% Similarity=0.078 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHhhcCC--CChhhhhHHHHHHhcCC---Chh----hHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHH
Q psy4020 58 DVHLLITNSLKNDLNS--STQFVVGLALCTLGAIA---SPE----MSRDLASEVERLMKS-----SNAYIRKKAALCAYR 123 (530)
Q Consensus 58 e~~~L~~Nsl~kDL~s--~n~~vr~lALr~l~~i~---~~e----l~~~l~~~V~~~l~~-----~~~yVRK~A~la~~k 123 (530)
|..-...+.+.+-+.+ .+-..|-.|+=+++.|. .++ .+..+++.+..++.+ +++.||.+++.++.+
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGr 526 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQ 526 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHH
Confidence 4444455666665554 34455555555555543 333 455677777777763 567788888888876
Q ss_pred HH---hhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCC-------------ChhhHHHHHHHHHHHhhcccCC
Q psy4020 124 II---LKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKN-------------DVEASEAMNDILAQVATNTETS 187 (530)
Q Consensus 124 i~---~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~-------------~~~~~~~l~~iL~~~l~~~~~~ 187 (530)
.. ..+|+.++..++.+.+.+.+.+++| |-..-..|..++.. .| ..+.+.+.+.++....+
T Consensus 527 y~~wl~~~~~~L~~vl~~L~~~l~~~~~~v-~~~A~~al~~l~~~c~~~l~~~~~~e~~p-~~~~il~~l~~~~~~l~-- 602 (1023)
T 4hat_C 527 YPRFLKAHWNFLRTVILKLFEFMHETHEGV-QDMACDTFIKIVQKCKYHFVIQQPRESEP-FIQTIIRDIQKTTADLQ-- 602 (1023)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHHHHHHTHHHHSCCTTCSSC-HHHHHHHTHHHHHTTSC--
T ss_pred HHHHHhccHHHHHHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHHHHHhhccCCCCCch-hHHHHHHHHHHHHHhCC--
Confidence 54 4578888888999999998888887 21222222222211 11 22333333444333221
Q ss_pred CCCcchhHHHHHHHHhccCCCh
Q psy4020 188 KNVGNTILYETVLSIMDIKSES 209 (530)
Q Consensus 188 ~n~~~aV~~eai~~i~~l~~~~ 209 (530)
..+...+|||+..++.-..+.
T Consensus 603 -~~~~~~lyeai~~vi~~~~~~ 623 (1023)
T 4hat_C 603 -PQQVHTFYKACGIIISEERSV 623 (1023)
T ss_dssp -HHHHHHHHHHHHHHHTTCCSH
T ss_pred -HHHHHHHHHHHHHHHHhCCCH
Confidence 124468999999988765543
No 88
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.80 E-value=0.37 Score=50.31 Aligned_cols=128 Identities=20% Similarity=0.207 Sum_probs=91.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHH
Q psy4020 98 LASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDIL 177 (530)
Q Consensus 98 l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL 177 (530)
-+..|....+ +++-.++-|+--+.|.|+.+|++.+..++...+|..|.|..| .+..++-|..+|+. +...++.|+|
T Consensus 30 ~y~~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~I-R~qaik~Lp~~ck~--~~i~kiaDvL 105 (507)
T 3u0r_A 30 AYQVILDGVK-GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSI-RRQAIKELPQFATG--ENLPRVADIL 105 (507)
T ss_dssp HHHHHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHH-HHHHHHHGGGGCCT--TCHHHHHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHH-HHHHHHhhHHHhhh--hhhhhHHHHH
Confidence 3555666544 468999999999999999999999999999999999999987 66778888899987 4467889999
Q ss_pred HHHhhcccCCCCCcchhHHHHHH----HHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHH
Q psy4020 178 AQVATNTETSKNVGNTILYETVL----SIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRT 241 (530)
Q Consensus 178 ~~~l~~~~~~~n~~~aV~~eai~----~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l 241 (530)
.|+++. ...+-+.+++ .++...+.. ....+-..+.+++..+|.-+|.-|..-
T Consensus 106 ~QlLqt-------dd~~E~~~V~~sL~sllk~Dpk~-----tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 106 TQLLQT-------DDSAEFNLVNNALLSIFKMDAKG-----TLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp HHHTTC-------CCHHHHHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHhc-------cchHHHHHHHHHHHHHHhcChHH-----HHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 999874 2344444444 344332221 223333444456788888777766443
No 89
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.053 Score=52.77 Aligned_cols=127 Identities=9% Similarity=0.045 Sum_probs=85.2
Q ss_pred CCCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhH---------HHHHHHHHHhhcCCCChhhhhHHHHHHhcCCC--
Q psy4020 23 AHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDV---------HLLITNSLKNDLNSSTQFVVGLALCTLGAIAS-- 91 (530)
Q Consensus 23 ~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~---------~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~-- 91 (530)
.+|.-...-.-+.|++...|.=||-.+...+...+.. ..-....++|-+.++|..+...||.+++.+..
T Consensus 7 ~d~sklpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~ 86 (278)
T 4ffb_C 7 VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAF 86 (278)
T ss_dssp ----CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred hhhhcCCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 3444333447889999999999999988776543211 11235578888999999999998888875432
Q ss_pred ----------hhhHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcc
Q psy4020 92 ----------PEMSRDLASEVE-RLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAI 150 (530)
Q Consensus 92 ----------~el~~~l~~~V~-~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V 150 (530)
...+..+.+.+. +++.++.+-+|..|.-|+..++..... ...+++.+...+..+||.+
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-~~~~~e~l~~~l~~Knpkv 155 (278)
T 4ffb_C 87 ASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-ITQSVELVIPFFEKKLPKL 155 (278)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-SHHHHHHHGGGGGCSCHHH
T ss_pred hhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhccCHHH
Confidence 123455666555 678999999999999998887754321 2234566666777777765
No 90
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.38 E-value=4.4 Score=46.23 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=29.5
Q ss_pred CcHHHHHHHHHHHHhccCh--hhHHHHHHHHHHHhhhc--CchhhhhhHHHHHHHHHhhCC
Q psy4020 263 PDVSIRRRALELSFALVNS--ANVRSMMKELLIFLEKS--EPDFKAHCSSNIVLCAERFAP 319 (530)
Q Consensus 263 ~d~~Ir~~aL~ll~~l~n~--~Nv~~Iv~eL~~yl~~~--d~~~~~~~i~~I~~la~k~~~ 319 (530)
.|..+...+..++..++.. +.+...+..+.+++... ..+. ...+.-++.++.+|..
T Consensus 705 ~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~-~~~l~l~~~~i~~~~~ 764 (971)
T 2x1g_F 705 EEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC-APTLEISKTAIVMFFK 764 (971)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC-HHHHHHHHHHHTTCCC
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCC
Confidence 3567888888877775532 22333445555555321 1112 2356666677777754
No 91
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.22 E-value=1.4 Score=47.77 Aligned_cols=164 Identities=18% Similarity=0.158 Sum_probs=101.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhChhhHH-hhHHHHHHhcCCC--CCcchHHHHHHHH-HhhcCCChhhHHHHHHHHHH
Q psy4020 104 RLMKSSNAYIRKKAALCAYRIILKVPELME-IFLPATRLLLSDK--NHAIHQVKILKLL-RILGKNDVEASEAMNDILAQ 179 (530)
Q Consensus 104 ~~l~~~~~yVRK~A~la~~ki~~~~p~~i~-~~i~~l~~lL~d~--n~~V~qi~iL~lL-~~l~~~~~~~~~~l~~iL~~ 179 (530)
++-+..-.-=||.|+.++-.+.+++|+.+- .-++.+.+.|.+. |..+... +|+.| ..+++.+.+.....
T Consensus 29 Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~-~LetL~~l~~~~~~~~~~~~------ 101 (651)
T 3grl_A 29 RVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGY-ALDTLYNIISNDEEEEVEEN------ 101 (651)
T ss_dssp HHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHH-HHHHHHHHHCCC--------------
T ss_pred HHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHH-HHHHHHHHhCCCCccccccc------
Confidence 333345667799999999999999998764 4577777666543 3333333 33333 34444322111000
Q ss_pred HhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHH-------
Q psy4020 180 VATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRH------- 252 (530)
Q Consensus 180 ~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~------- 252 (530)
+.+ ...-+-..-+..++. ++ ..+..|..+|.+.|..+|+-+++.|..+...+|+.++++
T Consensus 102 ---~~~----~~~~~~~~~~d~f~~---~~----~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~g 167 (651)
T 3grl_A 102 ---STR----QSEDLGSQFTEIFIK---QQ----ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMG 167 (651)
T ss_dssp -------------CHHHHHHHHHHH---ST----HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTH
T ss_pred ---ccc----cchHHHHHHHHHHHc---CC----ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCccc
Confidence 000 011111111111211 11 346678888899999999999999999998888755443
Q ss_pred HHHHhhhccCCcHHHHHHHHHHHHhccCh-hhHHHHH
Q psy4020 253 RNTILECLKDPDVSIRRRALELSFALVNS-ANVRSMM 288 (530)
Q Consensus 253 ~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~-~Nv~~Iv 288 (530)
...++.+|+|+...||-.++-+|..++.. .+++.++
T Consensus 168 i~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklV 204 (651)
T 3grl_A 168 VSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIV 204 (651)
T ss_dssp HHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 45678899999899999999999999854 4445444
No 92
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.68 E-value=6.9 Score=44.39 Aligned_cols=276 Identities=8% Similarity=0.066 Sum_probs=143.3
Q ss_pred HHHHh-hcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC-------ChhhHHHHHH
Q psy4020 29 ECLKL-IASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA-------SPEMSRDLAS 100 (530)
Q Consensus 29 ~vikl-~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~-------~~el~~~l~~ 100 (530)
++++. ..+++-..|+-+.-++..+-. +|+....+..-+. .+.++.+|-.|+.+|-+.. .++-.+.+-.
T Consensus 28 ~~l~~l~~~~~~~~r~~A~~~L~~~~~-~p~~~~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~ 103 (963)
T 2x19_B 28 KALHQLYYDPNIENKNLAQKWLMQAQV-SPQAWHFSWQLLQ---PDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKA 103 (963)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHH-STTHHHHHHHHTS---TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHH
Confidence 34443 556788889888888877543 4554433333333 3568889988888877532 2333444555
Q ss_pred HHHHHhcC---CCHHHHHHHHHHHHHHHhh-ChhhHHhhHHHHHHhcCCC-----CCcchHHHHHHHHHhhcC----C-C
Q psy4020 101 EVERLMKS---SNAYIRKKAALCAYRIILK-VPELMEIFLPATRLLLSDK-----NHAIHQVKILKLLRILGK----N-D 166 (530)
Q Consensus 101 ~V~~~l~~---~~~yVRK~A~la~~ki~~~-~p~~i~~~i~~l~~lL~d~-----n~~V~qi~iL~lL~~l~~----~-~ 166 (530)
.+.+.+.+ ..++||.+.+.|+..+.+. +|+-=+++++.+..++... ++.. ....+++|..++. . .
T Consensus 104 ~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~-~~~~l~iL~~l~ee~~~~~~ 182 (963)
T 2x19_B 104 QLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGR-CLALLELLTVLPEEFQTSRL 182 (963)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHH-HHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHH-HHHHHHHHHhCHHHHhcccC
Confidence 55555544 4699999999999999886 3433334555555666541 2111 2223334333321 1 0
Q ss_pred ------------hhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhc---cCCChHHHHHHHHHHHHhccCCCchhH
Q psy4020 167 ------------VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMD---IKSESGLRVLAVNILGRFLLNNDKNIR 231 (530)
Q Consensus 167 ------------~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~---l~~~~~l~~~~v~~L~~lL~s~d~nir 231 (530)
......+.+++..++.... ....+.-.+.+++.. ++.........+..+..++ .++++|
T Consensus 183 ~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~----~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l--~~~~~~ 256 (963)
T 2x19_B 183 PQYRKGLVRTSLAVECGAVFPLLEQLLQQPS----SPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAAL--QDSELF 256 (963)
T ss_dssp ---------CCSGGGHHHHHHHHHHHHSCTT----CCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHT--TSTTTH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHh--CCchHH
Confidence 0112345555666654321 111255555555532 2221110122334444555 468899
Q ss_pred HHHHHHHHHHhccC--h---HHHHHHHHHHh-------hhccCCcHHHHHHHHHHHHhcc------------ChhhHHHH
Q psy4020 232 YVALNTLLRTVYID--T---SAVQRHRNTIL-------ECLKDPDVSIRRRALELSFALV------------NSANVRSM 287 (530)
Q Consensus 232 y~aL~~L~~l~~~~--p---~~~~~~~~~i~-------~~l~d~d~~Ir~~aL~ll~~l~------------n~~Nv~~I 287 (530)
-.+++.+..++... | ..+......++ .++.+.|....+...+++..++ ...++..+
T Consensus 257 ~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 336 (963)
T 2x19_B 257 DSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLAL 336 (963)
T ss_dssp HHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHH
Confidence 99999999998753 1 22222222222 1223344444445556655544 33455556
Q ss_pred HHHHHHHhhh-----cCchhhhhhHHHHHHHHH
Q psy4020 288 MKELLIFLEK-----SEPDFKAHCSSNIVLCAE 315 (530)
Q Consensus 288 v~eL~~yl~~-----~d~~~~~~~i~~I~~la~ 315 (530)
++-|+++... .|.+....++.-...+++
T Consensus 337 l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~ 369 (963)
T 2x19_B 337 VNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQD 369 (963)
T ss_dssp HHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHH
Confidence 6666655542 244444444444444444
No 93
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.62 E-value=2.9 Score=47.94 Aligned_cols=265 Identities=12% Similarity=0.113 Sum_probs=152.0
Q ss_pred CchhHHHHHHHHhhccC--ChhHHHHHHHHHHhhcCCCC-hhhhhHHHHHHhcCC--Chhh---HHHHHHHHHHHhcCCC
Q psy4020 39 FTDKRIGYLGAMLLLDE--RQDVHLLITNSLKNDLNSST-QFVVGLALCTLGAIA--SPEM---SRDLASEVERLMKSSN 110 (530)
Q Consensus 39 ~~~Krl~YL~l~~~~~~--~~e~~~L~~Nsl~kDL~s~n-~~vr~lALr~l~~i~--~~el---~~~l~~~V~~~l~~~~ 110 (530)
-+.|..++-....+... ...+..=+...++|-+.+.+ +.--..++..||.-. .+.. .-.+.+.+...+.|+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~ 108 (986)
T 2iw3_A 29 DNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD 108 (986)
T ss_dssp TTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc
Confidence 33455555555554432 12222246788888888763 433345556666322 1222 2234689999999999
Q ss_pred HHHHHHHHHHHHHHHhh-ChhhHHhhHHHHHHhcCCCCCcc-hHHHHHHHHHhhcCCChhh-HHHHHH---HHHHHhhcc
Q psy4020 111 AYIRKKAALCAYRIILK-VPELMEIFLPATRLLLSDKNHAI-HQVKILKLLRILGKNDVEA-SEAMND---ILAQVATNT 184 (530)
Q Consensus 111 ~yVRK~A~la~~ki~~~-~p~~i~~~i~~l~~lL~d~n~~V-~qi~iL~lL~~l~~~~~~~-~~~l~~---iL~~~l~~~ 184 (530)
+-||++|-.|+..++.. .|+.+..++|.+.+.|.... -+ ..+..|+++..+...-|+. ...+-+ ++..+...+
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~ 187 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETN-KWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDT 187 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccC
Confidence 99999999999999886 46788889999999885443 23 4566677777776544543 223333 333333221
Q ss_pred cCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhcc------ChHHHHHHHHHHhh
Q psy4020 185 ETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYI------DTSAVQRHRNTILE 258 (530)
Q Consensus 185 ~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~------~p~~~~~~~~~i~~ 258 (530)
|..=..-.++|...++.+-.+.+ +...+..|.+-+.+. .+ +=+++..|... +...+.-...-+.+
T Consensus 188 ---k~~v~~~~~~~~~~~~~~~~n~d-~~~~~~~~~~~~~~p-~~----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r 258 (986)
T 2iw3_A 188 ---KKEVKAAATAAMTKATETVDNKD-IERFIPSLIQCIADP-TE----VPETVHLLGATTFVAEVTPATLSIMVPLLSR 258 (986)
T ss_dssp ---SHHHHHHHHHHHHHHGGGCCCTT-TGGGHHHHHHHHHCT-TH----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHHHHhcCCCcc-hhhhHHHHHHHhcCh-hh----hHHHHHHhhcCeeEeeecchhHHHHHHHHHh
Confidence 10001122333333444323322 122333444444333 22 33444445432 22233334455667
Q ss_pred hccCCcHHHHHHHHHHHHhcc----ChhhHHHHHHHHHHHhhh-----cCchhhhhhHHHHHHH
Q psy4020 259 CLKDPDVSIRRRALELSFALV----NSANVRSMMKELLIFLEK-----SEPDFKAHCSSNIVLC 313 (530)
Q Consensus 259 ~l~d~d~~Ir~~aL~ll~~l~----n~~Nv~~Iv~eL~~yl~~-----~d~~~~~~~i~~I~~l 313 (530)
.|++....++|++.-++-+|| |+.-+...+..|+--+.+ +|+|.|..+-+++..+
T Consensus 259 ~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 259 GLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred hhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 889999999999987776655 566666666666666654 4888888777777665
No 94
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.55 E-value=5 Score=46.13 Aligned_cols=297 Identities=12% Similarity=0.041 Sum_probs=155.7
Q ss_pred hHHHHHHHHhhccCChhHHHH-----HHHHHHhhcC---CCChhhhhHHHHHHhcCCCh------------hhHHHHHHH
Q psy4020 42 KRIGYLGAMLLLDERQDVHLL-----ITNSLKNDLN---SSTQFVVGLALCTLGAIASP------------EMSRDLASE 101 (530)
Q Consensus 42 Krl~YL~l~~~~~~~~e~~~L-----~~Nsl~kDL~---s~n~~vr~lALr~l~~i~~~------------el~~~l~~~ 101 (530)
|+++ .....+.--.++..+- +.+.+.+-+. +.+=..+-.||..|+.++.- +..+.+.+.
T Consensus 416 k~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~l 494 (980)
T 3ibv_A 416 KKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQI 494 (980)
T ss_dssp HHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHH
T ss_pred HHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHH
Confidence 3444 4444444445555443 3344444442 23345677788887765532 123456677
Q ss_pred HHHHhc-----CCCHHHHHHHHHHHHHHHh---hChhhHHhhHHHHHH--hcCCCCCcchHHHHHHHHHhhc---CC--C
Q psy4020 102 VERLMK-----SSNAYIRKKAALCAYRIIL---KVPELMEIFLPATRL--LLSDKNHAIHQVKILKLLRILG---KN--D 166 (530)
Q Consensus 102 V~~~l~-----~~~~yVRK~A~la~~ki~~---~~p~~i~~~i~~l~~--lL~d~n~~V~qi~iL~lL~~l~---~~--~ 166 (530)
+.+++. +++|.||..++.++.|..+ .+|+.++..++.+.+ .+.+.++.| +...-.+|.+++ +. .
T Consensus 495 l~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V-~~~a~~af~~f~~~~~~~L~ 573 (980)
T 3ibv_A 495 LALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERV-RPRAWYLFYRFVKSIKKQVV 573 (980)
T ss_dssp HHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTT-HHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhH-HHHHHHHHHHHHHHhhHHhh
Confidence 777766 7899999999999988655 468888777777777 777777777 333333333333 22 1
Q ss_pred hhhHHHHHHHHHHHhhcc-cCCCCC-----------------cchhHHHHHHHHhccCC-Ch----HHHHHHHH----HH
Q psy4020 167 VEASEAMNDILAQVATNT-ETSKNV-----------------GNTILYETVLSIMDIKS-ES----GLRVLAVN----IL 219 (530)
Q Consensus 167 ~~~~~~l~~iL~~~l~~~-~~~~n~-----------------~~aV~~eai~~i~~l~~-~~----~l~~~~v~----~L 219 (530)
|. .+.+..-+..++... +..+.. +--.+|||+-+++.... ++ ...+.... .+
T Consensus 574 ~~-~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l 652 (980)
T 3ibv_A 574 NY-TESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKA 652 (980)
T ss_dssp SS-HHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22 233333333333311 100000 12369999999886533 22 22222333 34
Q ss_pred HHhccCCC-c-hhHH---HHHHHHHHHhccC--------h--HHHHHHHHHHhhhcc--CCcHHHHHHHHHHHHhccCh-
Q psy4020 220 GRFLLNND-K-NIRY---VALNTLLRTVYID--------T--SAVQRHRNTILECLK--DPDVSIRRRALELSFALVNS- 281 (530)
Q Consensus 220 ~~lL~s~d-~-niry---~aL~~L~~l~~~~--------p--~~~~~~~~~i~~~l~--d~d~~Ir~~aL~ll~~l~n~- 281 (530)
...+.... . +-+. -.+..+..++... | ..|.+....++.++. ..+..||.++-..+-+++.-
T Consensus 653 ~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~l 732 (980)
T 3ibv_A 653 NAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVV 732 (980)
T ss_dssp HHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTT
T ss_pred HHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHc
Confidence 44443211 1 1111 1222233333221 2 133444444544444 45678888877777665532
Q ss_pred -hhHHHHHHHHHHHhhhc-CchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHHhhhhhhc
Q psy4020 282 -ANVRSMMKELLIFLEKS-EPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSN 341 (530)
Q Consensus 282 -~Nv~~Iv~eL~~yl~~~-d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~~~~~~v~ 341 (530)
..+...+..+.+.+-.. +..=-.+.+.-++.+..+|..+....++.++.-+..++-.+.+
T Consensus 733 g~~~~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~ 794 (980)
T 3ibv_A 733 GPDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLS 794 (980)
T ss_dssp HHHHTTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred cHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22444455555544421 3222345667788999999877556666665555544433333
No 95
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.18 E-value=5.6 Score=45.77 Aligned_cols=122 Identities=14% Similarity=0.031 Sum_probs=72.5
Q ss_pred CCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC---Chh----hHHHHHHHHHHHhc---
Q psy4020 38 RFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA---SPE----MSRDLASEVERLMK--- 107 (530)
Q Consensus 38 ~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~---~~e----l~~~l~~~V~~~l~--- 107 (530)
+-..|+-++-++..+-+. +|.-..+..-+. +-...++.+|-.|+.+|-+.. .++ -...+-..+...+.
T Consensus 21 d~~~r~~A~~~L~~~q~s-p~aw~~~~~iL~-~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~ 98 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS-STGWKICHEIFS-EKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELS 98 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS-TTHHHHHHHHTT-CTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHcC-hhHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhc
Confidence 678888898888887544 554433333332 211237888888877776421 233 33444444444444
Q ss_pred --CCCHHHHHHHHHHHHHHHhh-ChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHh
Q psy4020 108 --SSNAYIRKKAALCAYRIILK-VPELMEIFLPATRLLLSDKNHAIHQVKILKLLRI 161 (530)
Q Consensus 108 --~~~~yVRK~A~la~~ki~~~-~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~ 161 (530)
+..+|||.|.+.++..++++ +|+.=+.|++.+.+++...+.......++++|..
T Consensus 99 ~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~ 155 (980)
T 3ibv_A 99 FLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLS 155 (980)
T ss_dssp STTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 24689999999999999876 4554445566666655443431234455666663
No 96
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=94.11 E-value=0.6 Score=53.50 Aligned_cols=245 Identities=9% Similarity=0.001 Sum_probs=128.6
Q ss_pred hHHHHHHhcCCChhhHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHhhChh----hHHhhHHHHHHhcC-CCCCc
Q psy4020 80 GLALCTLGAIASPEMSRDLASEVERLMKS-----SNAYIRKKAALCAYRIILKVPE----LMEIFLPATRLLLS-DKNHA 149 (530)
Q Consensus 80 ~lALr~l~~i~~~el~~~l~~~V~~~l~~-----~~~yVRK~A~la~~ki~~~~p~----~i~~~i~~l~~lL~-d~n~~ 149 (530)
+-+|+.++.+...++.+.+.+.+...+.+ .+...|..|++|+..+....++ .++.+++.+.++.. |. +.
T Consensus 442 ~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~-~~ 520 (971)
T 2x1g_F 442 SDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKL-NV 520 (971)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTS-CH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCcccc-CH
Confidence 44577888887788888999999888875 5777888999998888665433 23445554444432 33 34
Q ss_pred chHHHHHHHHHhhcC---CChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC--ChH---HHHHHHHHHHH
Q psy4020 150 IHQVKILKLLRILGK---NDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKS--ESG---LRVLAVNILGR 221 (530)
Q Consensus 150 V~qi~iL~lL~~l~~---~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~--~~~---l~~~~v~~L~~ 221 (530)
.+....+.++..|+. .+++....+.+.+...+. +-|.-.|+.++..+-. ... ......+.+..
T Consensus 521 ~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~---------~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~ 591 (971)
T 2x1g_F 521 KLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN---------SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHA 591 (971)
T ss_dssp HHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH---------SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC---------hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 445555666666643 234433334443333332 1244455555444321 111 22334455556
Q ss_pred hccC--CCchhHHHHHHHHHHHhccCh-H----HHH----HHHHHHhhhccCC--cHHHHHH---HHHHHHhccC---h-
Q psy4020 222 FLLN--NDKNIRYVALNTLLRTVYIDT-S----AVQ----RHRNTILECLKDP--DVSIRRR---ALELSFALVN---S- 281 (530)
Q Consensus 222 lL~s--~d~niry~aL~~L~~l~~~~p-~----~~~----~~~~~i~~~l~d~--d~~Ir~~---aL~ll~~l~n---~- 281 (530)
++.+ -+.+.+..+++.+..++..-| + .+. +....+-.++.++ +..-+.. .++.+..+.. .
T Consensus 592 ~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~ 671 (971)
T 2x1g_F 592 SLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTD 671 (971)
T ss_dssp HHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCC
Confidence 6654 367889999999998876432 2 222 2222222333332 2222333 3333333211 1
Q ss_pred -----------hhHHHHHHHHH----HHhhh--cCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH
Q psy4020 282 -----------ANVRSMMKELL----IFLEK--SEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA 334 (530)
Q Consensus 282 -----------~Nv~~Iv~eL~----~yl~~--~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~ 334 (530)
+.+..+.+++. .-+.. .+.++.+.++..++.++..|.+...-++..+++++..
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~ 741 (971)
T 2x1g_F 672 VDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVA 741 (971)
T ss_dssp ------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHH
T ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHH
Confidence 11222222222 22222 2567889999999998887765555567777776653
No 97
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.03 E-value=3.5 Score=39.01 Aligned_cols=71 Identities=15% Similarity=0.051 Sum_probs=45.0
Q ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHHHhhChhhHH-----hhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhH
Q psy4020 99 ASEVERLMKSSNA--YIRKKAALCAYRIILKVPELME-----IFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEAS 170 (530)
Q Consensus 99 ~~~V~~~l~~~~~--yVRK~A~la~~ki~~~~p~~i~-----~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~ 170 (530)
.+.+.+.|.++++ -++..|+-++..+...+++.-. ..++.+.++|...++.+ |......|+.+...+++..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~v-q~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDV-QRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHH-HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHH-HHHHHHHHHHHHhCCHHHH
Confidence 4556667777766 7777777777777665554221 45777888887655443 5566666666665555433
No 98
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=93.89 E-value=6.1 Score=45.59 Aligned_cols=145 Identities=6% Similarity=0.072 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhhcCC--CChhhhhHHHHHHhcCCC---h----hhHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHH
Q psy4020 59 VHLLITNSLKNDLNS--STQFVVGLALCTLGAIAS---P----EMSRDLASEVERLMK-----SSNAYIRKKAALCAYRI 124 (530)
Q Consensus 59 ~~~L~~Nsl~kDL~s--~n~~vr~lALr~l~~i~~---~----el~~~l~~~V~~~l~-----~~~~yVRK~A~la~~ki 124 (530)
+.-.+.+.+.+-+++ .+...+-.|+.+++.|.. . .....+.+.+..+.. +++|.||.+++.++.+.
T Consensus 448 ~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry 527 (1049)
T 3m1i_C 448 TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQY 527 (1049)
T ss_dssp HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHH
Confidence 334455666665543 456678888888888864 2 224455555555433 24667776777777754
Q ss_pred ---HhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCC-------------ChhhHHHHHHHHHHHhhcccCCC
Q psy4020 125 ---ILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKN-------------DVEASEAMNDILAQVATNTETSK 188 (530)
Q Consensus 125 ---~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~-------------~~~~~~~l~~iL~~~l~~~~~~~ 188 (530)
+..+|+.++..++.+.+.+.|.++.| |...-..|..++.. .|- .+.+.+.+..++...+
T Consensus 528 ~~~~~~~~~~l~~vl~~ll~~l~~~~~~V-~~~A~~al~~l~~~~~~~l~~~~~~~~~p~-~~~il~~l~~~~~~~~--- 602 (1049)
T 3m1i_C 528 PRFLKAHWNFLRTVILKLFEFMHETHEGV-QDMACDTFIKIVQKCKYHFVIQQPRESEPF-IQTIIRDIQKTTADLQ--- 602 (1049)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTSSCHHH-HHHHHHHHHHHHHHHTHHHHSCCTTCSSCH-HHHHHHTHHHHHTTSC---
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHhhcccCCCCCcH-HHHHHHHHHHHHHhCC---
Confidence 44578888888888888898888777 22222333333221 011 2333333444444321
Q ss_pred CCcchhHHHHHHHHhccCCC
Q psy4020 189 NVGNTILYETVLSIMDIKSE 208 (530)
Q Consensus 189 n~~~aV~~eai~~i~~l~~~ 208 (530)
+.....+|||+..++....+
T Consensus 603 ~~~~~~~~eai~~ii~~~~~ 622 (1049)
T 3m1i_C 603 PQQVHTFYKACGIIISEERS 622 (1049)
T ss_dssp HHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 12456889999988765443
No 99
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=93.86 E-value=2.4 Score=40.10 Aligned_cols=152 Identities=8% Similarity=-0.016 Sum_probs=100.1
Q ss_pred CCCCchHHHHHhhcCCCC--chhHHHHHHHHhhccCChhH--HH---HHHHHHHhhcCCCChhhhhHHHHHHhcCCC--h
Q psy4020 22 PAHFGQLECLKLIASSRF--TDKRIGYLGAMLLLDERQDV--HL---LITNSLKNDLNSSTQFVVGLALCTLGAIAS--P 92 (530)
Q Consensus 22 d~sf~~~~vikl~~S~~~--~~Krl~YL~l~~~~~~~~e~--~~---L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~--~ 92 (530)
++.......++++.|++. ..+..+--++..+...+++. .+ =++..|.+-|.++++.++-.|..+|.++.. +
T Consensus 5 ~~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 5 DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred chhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 345667889999999998 66665544555555444332 21 256788888999999999988888888763 4
Q ss_pred hhH----H-HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhC---hhhHHhhHHHHHHhcCC-------C-----C---C
Q psy4020 93 EMS----R-DLASEVERLMK-SSNAYIRKKAALCAYRIILKV---PELMEIFLPATRLLLSD-------K-----N---H 148 (530)
Q Consensus 93 el~----~-~l~~~V~~~l~-~~~~yVRK~A~la~~ki~~~~---p~~i~~~i~~l~~lL~d-------~-----n---~ 148 (530)
+-- + ..++.+.++|. ++++.+++.|+-++..+.... +.+++..++.+.+++.. . + .
T Consensus 85 ~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccch
Confidence 332 2 25788889997 579999999998998886532 23445566777766531 0 0 0
Q ss_pred cchHHHHHHHHHhhcCCChhhHHHH
Q psy4020 149 AIHQVKILKLLRILGKNDVEASEAM 173 (530)
Q Consensus 149 ~V~qi~iL~lL~~l~~~~~~~~~~l 173 (530)
.-.+......|+.+.-.+++..+.|
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~ 189 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAM 189 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 1145566667777766665544433
No 100
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.46 E-value=9.9 Score=44.72 Aligned_cols=264 Identities=13% Similarity=0.085 Sum_probs=134.7
Q ss_pred HHHHhhcCC--CCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC-------ChhhHHHHH
Q psy4020 29 ECLKLIASS--RFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA-------SPEMSRDLA 99 (530)
Q Consensus 29 ~vikl~~S~--~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~-------~~el~~~l~ 99 (530)
++++.+.++ +-..|+-+.-++..+.. +|+....+.-.+. -.+.++.+|-.|+..|-+.. .++--+.+-
T Consensus 15 ~~l~~~~~p~~~~~~r~~Ae~~L~~~~~-~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir 91 (1204)
T 3a6p_A 15 KAVTVMMDPNSTQRYRLEALKFCEEFKE-KCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK 91 (1204)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHH-HCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHh-CchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 344444444 44568888877777643 3344334444443 24567889988886666432 344445555
Q ss_pred HHHHHHhcC-------CCHHHHHHHHHHHHHHHhh-ChhhHHhhHHHHHHhcCCCCCcc--hHHHHHHHHHh--hcCCC-
Q psy4020 100 SEVERLMKS-------SNAYIRKKAALCAYRIILK-VPELMEIFLPATRLLLSDKNHAI--HQVKILKLLRI--LGKND- 166 (530)
Q Consensus 100 ~~V~~~l~~-------~~~yVRK~A~la~~ki~~~-~p~~i~~~i~~l~~lL~d~n~~V--~qi~iL~lL~~--l~~~~- 166 (530)
..+.+.+.+ ..++||.+++.++..|++. +|+-=+++++.+.+++.. ++.. .-+.+|..+.. ....+
T Consensus 92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~ 170 (1204)
T 3a6p_A 92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTL 170 (1204)
T ss_dssp HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccch
Confidence 555555542 4699999999999999886 353333455555555543 2221 22233333321 11111
Q ss_pred -hh----hHH-------HHHHHHHHHhhcccC--------CCC-----CcchhHHHHHHHHhccCC--ChHHH-H---HH
Q psy4020 167 -VE----ASE-------AMNDILAQVATNTET--------SKN-----VGNTILYETVLSIMDIKS--ESGLR-V---LA 215 (530)
Q Consensus 167 -~~----~~~-------~l~~iL~~~l~~~~~--------~~n-----~~~aV~~eai~~i~~l~~--~~~l~-~---~~ 215 (530)
.. ..+ .+...+..++..... ..+ .+..++-.+.+++..+-. ...+. . ..
T Consensus 171 ~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~l 250 (1204)
T 3a6p_A 171 PPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKL 250 (1204)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchH
Confidence 10 011 122222233321000 000 122355555555543311 11111 1 13
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHhccC--hHH----HH----HHHHHHhhhc--------cCCcHHHHHHHHHHHHh
Q psy4020 216 VNILGRFLLNNDKNIRYVALNTLLRTVYID--TSA----VQ----RHRNTILECL--------KDPDVSIRRRALELSFA 277 (530)
Q Consensus 216 v~~L~~lL~s~d~niry~aL~~L~~l~~~~--p~~----~~----~~~~~i~~~l--------~d~d~~Ir~~aL~ll~~ 277 (530)
++.+..++ +++.+|-.|+++|..++.+. |+- +. .....++... .++|..+.++--+++..
T Consensus 251 l~~l~~~l--~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~ 328 (1204)
T 3a6p_A 251 LEILCLLL--NEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCA 328 (1204)
T ss_dssp HHHHHHGG--GCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHH
Confidence 44444554 36889999999999999865 331 11 1111233322 23345666666667666
Q ss_pred cc--------------ChhhHHHHHHHHHHHhhhc
Q psy4020 278 LV--------------NSANVRSMMKELLIFLEKS 298 (530)
Q Consensus 278 l~--------------n~~Nv~~Iv~eL~~yl~~~ 298 (530)
++ ...+...+++-++++....
T Consensus 329 lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~ 363 (1204)
T 3a6p_A 329 LGNQLCALLGADSDVETPSNFGKYLESFLAFTTHP 363 (1204)
T ss_dssp HHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhccccccChhHHHHHHHHHHHHHhCc
Confidence 55 4556677777777776543
No 101
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=93.43 E-value=3.3 Score=48.08 Aligned_cols=146 Identities=8% Similarity=0.147 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhcCCCC--h---hhhhHHHHHHhcCCCh----hhHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHH-
Q psy4020 59 VHLLITNSLKNDLNSST--Q---FVVGLALCTLGAIASP----EMSRDLASEVERLMKSS-----NAYIRKKAALCAYR- 123 (530)
Q Consensus 59 ~~~L~~Nsl~kDL~s~n--~---~vr~lALr~l~~i~~~----el~~~l~~~V~~~l~~~-----~~yVRK~A~la~~k- 123 (530)
..-.....+++-+++++ - .--+.|+++++.-..+ .....+++.+..+..++ .+-||...+..+.+
T Consensus 474 ~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY 553 (1073)
T 3gjx_A 474 TEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQY 553 (1073)
T ss_dssp HHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhh
Confidence 33344555666554432 1 2346788888554443 45566667776666655 34455544445543
Q ss_pred --HHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhh---cCC-----Ch----hhHHHHHHHHHHHhhcccCCCC
Q psy4020 124 --IILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRIL---GKN-----DV----EASEAMNDILAQVATNTETSKN 189 (530)
Q Consensus 124 --i~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l---~~~-----~~----~~~~~l~~iL~~~l~~~~~~~n 189 (530)
-.+.+|+.++..+..+.+.+.+.+++|.. ..-..|.++ |+. -+ ...+.+.+-+..+....+ .
T Consensus 554 ~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~-aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~---~ 629 (1073)
T 3gjx_A 554 PRFLRAHWKFLKTVVNKLFEFMHETHDGVQD-MACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQ---P 629 (1073)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCCSTTHHH-HHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCC---H
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcC---H
Confidence 33457888888888999999999999822 222223332 221 00 122333333333333221 1
Q ss_pred CcchhHHHHHHHHhccCCC
Q psy4020 190 VGNTILYETVLSIMDIKSE 208 (530)
Q Consensus 190 ~~~aV~~eai~~i~~l~~~ 208 (530)
.+.-.+|||+-+++.-..+
T Consensus 630 ~~~~~lyeav~~vi~~~p~ 648 (1073)
T 3gjx_A 630 QQVHTFYEAVGYMIGAQTD 648 (1073)
T ss_dssp HHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 2445889999988765443
No 102
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.39 E-value=1.6 Score=49.72 Aligned_cols=240 Identities=9% Similarity=0.068 Sum_probs=130.3
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHhhChh----hHHhhHHHHHHhcCCCCCcchH
Q psy4020 81 LALCTLGAIASPEMSRDLASEVERLM----KSSNAYIRKKAALCAYRIILKVPE----LMEIFLPATRLLLSDKNHAIHQ 152 (530)
Q Consensus 81 lALr~l~~i~~~el~~~l~~~V~~~l----~~~~~yVRK~A~la~~ki~~~~p~----~i~~~i~~l~~lL~d~n~~V~q 152 (530)
-.|+.++.+...++.+.+.+.+.+.+ .+.+...|-.|+.|+..+....++ .+..+++.+.++ .+. +..+.
T Consensus 429 ~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~~-~~~vr 506 (963)
T 2x19_B 429 DTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SIS-NVQLA 506 (963)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CCC-SHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CCC-cHHHH
Confidence 35777787777888888888888888 677888899999999988775443 233334433332 332 33345
Q ss_pred HHHHHHHHhhcCC---ChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC------ChHHHHHHHHHHHHhc
Q psy4020 153 VKILKLLRILGKN---DVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKS------ESGLRVLAVNILGRFL 223 (530)
Q Consensus 153 i~iL~lL~~l~~~---~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~------~~~l~~~~v~~L~~lL 223 (530)
...+.++..|+.. +++....+.+.+...+. ++.|.-.|+.++..+.. .| ......+.|..++
T Consensus 507 ~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~--------~~~V~~~A~~al~~l~~~~~~~l~p-~~~~il~~l~~~l 577 (963)
T 2x19_B 507 DTVMFTIGALSEWLADHPVMINSVLPLVLHALG--------NPELSVSSVSTLKKICRECKYDLPP-YAANIVAVSQDVL 577 (963)
T ss_dssp HHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTT--------CGGGHHHHHHHHHHHHHHTGGGCTT-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC--------CchHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHh
Confidence 5666777766542 23222222222222222 24566666666654421 12 1334555666666
Q ss_pred cC--CCchhHHHHHHHHHHHhccCh-HHHHHHHHHHhh--------hccC-CcHHHHH---HHHHHHHhc---cC-----
Q psy4020 224 LN--NDKNIRYVALNTLLRTVYIDT-SAVQRHRNTILE--------CLKD-PDVSIRR---RALELSFAL---VN----- 280 (530)
Q Consensus 224 ~s--~d~niry~aL~~L~~l~~~~p-~~~~~~~~~i~~--------~l~d-~d~~Ir~---~aL~ll~~l---~n----- 280 (530)
.+ -+.+.|..+++++..++..-| +.+.++...++. +..+ .+...+. ..++.+..+ ..
T Consensus 578 ~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~ 657 (963)
T 2x19_B 578 MKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHE 657 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC
T ss_pred ccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 53 256789889999988886553 444444433332 1122 2333333 344444322 11
Q ss_pred ----------------hhhHHHHHHHHHHH----hhh--cCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHH
Q psy4020 281 ----------------SANVRSMMKELLIF----LEK--SEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKV 331 (530)
Q Consensus 281 ----------------~~Nv~~Iv~eL~~y----l~~--~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~l 331 (530)
+..+..+.+++... ++. .+.+..+.+...++.++.-+.+...-++..+++.
T Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~ 730 (963)
T 2x19_B 658 DDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEM 730 (963)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHH
T ss_pred ccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 11233333333332 221 2456777777777777776665554455544444
No 103
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.22 E-value=0.6 Score=45.26 Aligned_cols=170 Identities=15% Similarity=0.115 Sum_probs=101.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhH----HHHHHhcCCCCCcchHHHHHHHHHhh----cCCChhhH
Q psy4020 99 ASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFL----PATRLLLSDKNHAIHQVKILKLLRIL----GKNDVEAS 170 (530)
Q Consensus 99 ~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i----~~l~~lL~d~n~~V~qi~iL~lL~~l----~~~~~~~~ 170 (530)
-+++...+.+++.--|-+|+-.+.+.....|+.+-..+ +-+.-.+.|+|+.|++ +.|++|..+ ...+....
T Consensus 48 ~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~-~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 48 KVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALI-KVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp CHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHH-HHHHHHHHHHHHHHHTTCCCC
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHhccccch
Confidence 34566777888887788888888888777876544333 3333355688888743 445555433 32222111
Q ss_pred -HHHHHHHHHHhhcccCCCCCcchhHHHHHHHHh----ccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccC
Q psy4020 171 -EAMNDILAQVATNTETSKNVGNTILYETVLSIM----DIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYID 245 (530)
Q Consensus 171 -~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~----~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~ 245 (530)
.+...++-.++.+.-. +..-+.+.++.++ .+.+.+ .....+..=+.+++.-.|--+|+.+..+.+.+
T Consensus 127 ~~ea~~~lP~LveKlGd----~k~~vR~~~r~il~~l~~v~~~~----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGE----AKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp HHHHHHHHHHHHHGGGC----SSHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 1122233333443211 2234455555443 222222 23334444557788889999999999888765
Q ss_pred hHHHHHHH---HHHhhhccCCcHHHHHHHHHHHHh
Q psy4020 246 TSAVQRHR---NTILECLKDPDVSIRRRALELSFA 277 (530)
Q Consensus 246 p~~~~~~~---~~i~~~l~d~d~~Ir~~aL~ll~~ 277 (530)
.-...... ..+-.++.|+|..+|.-|++.+..
T Consensus 199 G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve 233 (266)
T 2of3_A 199 GISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVA 233 (266)
T ss_dssp CSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred CCCccccccchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 32223456 778889999999999999998764
No 104
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.94 E-value=2.9 Score=40.39 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=26.6
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHhccChHHH
Q psy4020 217 NILGRFLLNNDKNIRYVALNTLLRTVYIDTSAV 249 (530)
Q Consensus 217 ~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~ 249 (530)
..+..++.++|+++|=.|+.++..+...-.+-+
T Consensus 210 ~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 210 KTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp HHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 678889999999999999999988765544433
No 105
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=92.93 E-value=0.28 Score=46.53 Aligned_cols=67 Identities=18% Similarity=0.101 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH---H--HhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhh
Q psy4020 99 ASEVERLMKSSNAYIRKKAALCAYR---I--ILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEA 169 (530)
Q Consensus 99 ~~~V~~~l~~~~~yVRK~A~la~~k---i--~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~ 169 (530)
.+.+.+...|.++.|||.|+.+... . ++.+|+ ..++.+..+..|.+-.| |-.+=.-|+-|.+.+|+.
T Consensus 141 l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~---~ll~iL~~L~~D~s~yV-rKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 141 LPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPN---EAIRRIADLKEDVSEYV-RKSVGNALRDISKKFPDL 212 (240)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHH---HHHHHHHTTTTCSCHHH-HHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHH---HHHHHHHHhcCChHHHH-HHHHHHHHHHHhhhCHHH
Confidence 3455566666677777766666421 0 122333 34445555555544443 445555566666666654
No 106
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=92.72 E-value=0.44 Score=46.01 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=50.8
Q ss_pred cchhhhhhhhccCCCCC--CceeEEE----eCCCcEEEEEeecCCCCCCeEEEEEEEeeCCcccccceEEEEeecCceEE
Q psy4020 403 HLDTLLKVLVAVSENKD--KVSVKAY----DNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQL 476 (530)
Q Consensus 403 ~~~~l~dll~~~~~~~~--~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l 476 (530)
|.+.|.|++++++.+++ .++-.++ ...||+|+..+.|.. +.+.+.++|+|.+.++|++|.+|.--- ++-|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~g~GLeI~g~f~r~~---g~i~l~l~~~N~s~~~is~faIQfNkN-sFGL 85 (258)
T 2g30_A 10 HSSGLVPRGSHMGMAPGGYVAPKAVWLPAVKAKGLEISGTFTHRQ---GHIYMEMNFTNKALQHMTDFAIQFNKN-SFGV 85 (258)
T ss_dssp ----------------CCCCCCCEEEECGGGTTTEEEEEEEEEET---TEEEEEEEEEECSSSCBCCCEEEECCB-TTCC
T ss_pred cccccccccCccCcCCcCCCCchhhcccccCCCcEEEEEEEEEeC---CEEEEEEEEecCCccceeeeEEEEccc-ccCc
Confidence 56678888877764331 1333333 567999999999973 679999999999999999999998632 2333
Q ss_pred EeeC--CCCCCCCCCCCceEEEEE
Q psy4020 477 QMLP--PSDTNIPPGSQVTQTLRV 498 (530)
Q Consensus 477 ~l~p--~Sg~~l~~~~~itQ~~~i 498 (530)
.... +....|+|+...+-.+-|
T Consensus 86 ~p~~~~~~~~~L~pgqs~~v~lpl 109 (258)
T 2g30_A 86 IPSTPLAIHTPLMPNQSIDVSLPL 109 (258)
T ss_dssp EESSCCCCCSCBCTTCEEEEEEEE
T ss_pred ccCccccCCCccCCCCcEEEEEee
Confidence 2211 223447776655545555
No 107
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.62 E-value=4 Score=47.36 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=76.8
Q ss_pred hHHHHHHHHhccCCChHHHHHHHHHHHHhccC-------CCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHH
Q psy4020 194 ILYETVLSIMDIKSESGLRVLAVNILGRFLLN-------NDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVS 266 (530)
Q Consensus 194 V~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s-------~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~ 266 (530)
-..-++++|-++.... +++.|.++|.. ....+|-.|+..|.++...+|+.+++....++.= ...+..
T Consensus 456 ~~~~~LkaLGN~g~p~-----~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n-~~e~~E 529 (1056)
T 1lsh_A 456 EIVLALKALGNAGQPN-----SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLN-VAIKSE 529 (1056)
T ss_dssp HHHHHHHHHHHHTCGG-----GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHC-TTSCHH
T ss_pred HHHHHHHHhhccCChh-----HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHHHHHHhcC-CCCChH
Confidence 3444555666555432 34566666632 1235778899999999888898877655555421 356789
Q ss_pred HHHHHHHHHHhccChhhHHHHHHHHHHHhhh-cCchhhhhhHHHHHHHHHhhCC
Q psy4020 267 IRRRALELSFALVNSANVRSMMKELLIFLEK-SEPDFKAHCSSNIVLCAERFAP 319 (530)
Q Consensus 267 Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~-~d~~~~~~~i~~I~~la~k~~~ 319 (530)
+|..|+.+|+. ++++ ..++..+..++.. .+.+++.-+...|..++..-.|
T Consensus 530 vRiaA~~~Lm~-t~P~--~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 530 LRIRSCIVFFE-SKPS--VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHHHHH-TCCC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHH-HCcC--HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 99999999987 4454 4556666777654 4667777777777777765433
No 108
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.39 E-value=2.6 Score=40.52 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=62.9
Q ss_pred hhhHHHHHHhc---CCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcch
Q psy4020 78 VVGLALCTLGA---IASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIH 151 (530)
Q Consensus 78 vr~lALr~l~~---i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~ 151 (530)
.+-..|+..-. -.+|++.+.+.+.+.....+++..|||--+-=+...++..|++....++.+..+++|.|+.|.
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~ 107 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVI 107 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 55555555444 247899999999999999999999999988888899999999999999999999999998874
No 109
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=92.39 E-value=19 Score=41.41 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=71.9
Q ss_pred HHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC-------ChhhHHHHHHH
Q psy4020 29 ECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA-------SPEMSRDLASE 101 (530)
Q Consensus 29 ~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~-------~~el~~~l~~~ 101 (530)
++++.+.+++-..|+-+--++..+- .+|+....+...+.+ +.++.+|-.|+.+|-+.. .++--+.+-..
T Consensus 20 ~~l~~~~~p~~~~r~~Ae~~L~~~~-~~p~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ 95 (1049)
T 3m1i_C 20 QVVSTFYQGSGVQQKQAQEILTKFQ-DNPDAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNF 95 (1049)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHH-HSTTGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHH-hCchHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHH
Confidence 4555566666667888888887764 345544344444444 558889988887777532 34444455555
Q ss_pred HHHHhcCC---------CHHHHHHHHHHHHHHHhh-ChhhHHhhHHHHHHhcC
Q psy4020 102 VERLMKSS---------NAYIRKKAALCAYRIILK-VPELMEIFLPATRLLLS 144 (530)
Q Consensus 102 V~~~l~~~---------~~yVRK~A~la~~ki~~~-~p~~i~~~i~~l~~lL~ 144 (530)
+...+.+. +++||.+.+.++..+.+. .|+-=+++++.+.++++
T Consensus 96 ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~ 148 (1049)
T 3m1i_C 96 VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS 148 (1049)
T ss_dssp HHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT
T ss_pred HHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc
Confidence 55555542 489999999999999886 45433345566666664
No 110
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=91.83 E-value=12 Score=37.99 Aligned_cols=89 Identities=13% Similarity=0.117 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHhhcCCCChhhhhHHHHHHhcC---CChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHh
Q psy4020 58 DVHLLITNSLKNDLNSSTQFVVGLALCTLGAI---ASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEI 134 (530)
Q Consensus 58 e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i---~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~ 134 (530)
|-+.-..|.-+. ++++ .+...|+.+-.+ .+|++.+.+.+.+.....+++..|||-.+--+...++.+++++..
T Consensus 25 ~~v~~lln~A~~---~~~~-~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~ 100 (386)
T 3o2t_A 25 ERVVDLLNQAAL---ITND-SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLK 100 (386)
T ss_dssp HHHHHHHHHHHH---CCST-HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHhhhc---cChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455444 2232 455666665554 578899999999999999999999999998889999999999999
Q ss_pred hHHHHHHhcCCCCCcc
Q psy4020 135 FLPATRLLLSDKNHAI 150 (530)
Q Consensus 135 ~i~~l~~lL~d~n~~V 150 (530)
.++.+..+|.|.|+.|
T Consensus 101 ~l~~L~~LL~d~d~~V 116 (386)
T 3o2t_A 101 LIANLNMLLRDENVNV 116 (386)
T ss_dssp HHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHcCCCHHH
Confidence 9999999999988887
No 111
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=91.05 E-value=4.1 Score=40.61 Aligned_cols=65 Identities=15% Similarity=0.054 Sum_probs=48.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHH-----HHHHhcCCCCCcchHHHHHHHHHhhcCC
Q psy4020 100 SEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLP-----ATRLLLSDKNHAIHQVKILKLLRILGKN 165 (530)
Q Consensus 100 ~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~-----~l~~lL~d~n~~V~qi~iL~lL~~l~~~ 165 (530)
..+.+.|.+++.-.+|.|+..+.+++..+++++.+|+. .+.....+. .+-.|.++|+.|..+.-.
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~ 190 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF 190 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc
Confidence 33344555677888999999999999999999998864 466666554 333588999999887655
No 112
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=88.49 E-value=2.4 Score=46.66 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=47.7
Q ss_pred HhhcCCCChhhhhHHHHHHhcCCC-hhhH-----HHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHhh-ChhhH
Q psy4020 68 KNDLNSSTQFVVGLALCTLGAIAS-PEMS-----RDLASE-VERLMKSSNAYIRKKAALCAYRIILK-VPELM 132 (530)
Q Consensus 68 ~kDL~s~n~~vr~lALr~l~~i~~-~el~-----~~l~~~-V~~~l~~~~~yVRK~A~la~~ki~~~-~p~~i 132 (530)
.+.|+|+++-.|..|+.+|+++.. ++.- +.++.. +.++|.|+++-||..|+-|+-.+... .++..
T Consensus 40 l~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 40 LKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 345999999999999999999884 3332 234444 45778999999999999888777654 34543
No 113
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=87.88 E-value=0.17 Score=48.54 Aligned_cols=38 Identities=16% Similarity=0.145 Sum_probs=21.7
Q ss_pred cCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy4020 71 LNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAAL 119 (530)
Q Consensus 71 L~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~l 119 (530)
+.|+++.+|..|.+.+. + ..+.+++.|+++.||..|+.
T Consensus 59 l~d~~~~VR~~AA~~l~----~-------~~l~~L~~D~~~~VR~~aA~ 96 (244)
T 1lrv_A 59 LADPFWERRAIAVRYSP----V-------EALTPLIRDSDEVVRRAVAY 96 (244)
T ss_dssp TTCSSHHHHHHHHTTSC----G-------GGGGGGTTCSSHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHhCC----H-------HHHHHHccCcCHHHHHHHHH
Confidence 35666666666666431 1 12445566666666666664
No 114
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=87.16 E-value=7.8 Score=38.59 Aligned_cols=75 Identities=15% Similarity=0.157 Sum_probs=56.7
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHhcc---------ChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccCh--hh
Q psy4020 215 AVNILGRFLLNNDKNIRYVALNTLLRTVYI---------DTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNS--AN 283 (530)
Q Consensus 215 ~v~~L~~lL~s~d~niry~aL~~L~~l~~~---------~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~--~N 283 (530)
..+.|.+.+...+.|++-.+|+++..+... +|..+ ..+..++.+.+..|.+.||+||..+|.- +|
T Consensus 161 GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI----~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~ 236 (339)
T 3dad_A 161 GLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTI----QWLYTLCASLSRLVVKTALKLLLVFVEYSENN 236 (339)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHH----HHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred cHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHH----HHHHHHHcCccHHHHHHHHHHHHHHHccCccc
Confidence 445677777778999999999999999764 33333 3345556678899999999999998754 48
Q ss_pred HHHHHHHHHH
Q psy4020 284 VRSMMKELLI 293 (530)
Q Consensus 284 v~~Iv~eL~~ 293 (530)
...+.++...
T Consensus 237 ~~lv~~av~~ 246 (339)
T 3dad_A 237 APLFIRAVNS 246 (339)
T ss_dssp HHHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 8877776663
No 115
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=87.01 E-value=2.5 Score=39.95 Aligned_cols=115 Identities=11% Similarity=0.039 Sum_probs=79.9
Q ss_pred HHHHhhcCCCCchhHHHHHHHHhh----------c--cCChhHHHHHH-HHHHhh----------cCCCChhhhhHHHH-
Q psy4020 29 ECLKLIASSRFTDKRIGYLGAMLL----------L--DERQDVHLLIT-NSLKND----------LNSSTQFVVGLALC- 84 (530)
Q Consensus 29 ~vikl~~S~~~~~Krl~YL~l~~~----------~--~~~~e~~~L~~-Nsl~kD----------L~s~n~~vr~lALr- 84 (530)
.+.+|..++.++.+-++-+.+..- . -.+-|+.-.++ |.+.++ ..|+|++.|-.|+-
T Consensus 52 la~~Lw~~~~~E~r~lA~li~~~~~~~~~~~~~~v~~~~nWd~~D~~~~~l~~~~~~~~~~~~~W~~s~~~w~rR~ai~~ 131 (235)
T 1t06_A 52 LAEELYATGNYDAMYFAGIIADPKAMSESDFDRWIDGAYFYMLSDYVVAVTLSESNIAQDVADKWIASGDELKMSAGWSC 131 (235)
T ss_dssp HHHHHHHTCCHHHHHHHHHHCCGGGCCHHHHHHHHHTCCSHHHHHHTHHHHHTTSSSHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHhhCHHhcCHHHHHHHHhCCCcHHHHHHHHHHHHhcCchHHHHHHHHHcCcHHHHHHHHHHH
Confidence 467788888888776665433210 0 01122332222 333332 24788999988888
Q ss_pred ---HHhcCC----ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhc
Q psy4020 85 ---TLGAIA----SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLL 143 (530)
Q Consensus 85 ---~l~~i~----~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL 143 (530)
.++... ...-.+.+...+...+.|.+.||+|...-++..+.+++|+.++.++....++-
T Consensus 132 q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~al~~~~~l~ 197 (235)
T 1t06_A 132 YCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEKAVEIAKEVG 197 (235)
T ss_dssp HHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHC
T ss_pred HHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhc
Confidence 656544 34567778888888999999999999999999999999999999987666654
No 116
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=86.89 E-value=39 Score=38.91 Aligned_cols=123 Identities=12% Similarity=0.075 Sum_probs=75.1
Q ss_pred CCCCCCchHH-HHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC-------C
Q psy4020 20 KYPAHFGQLE-CLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA-------S 91 (530)
Q Consensus 20 G~d~sf~~~~-vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~-------~ 91 (530)
+.+++....+ ++..+-+++-..|+-+.-++..+-+ +|+....+...+.+ +.++.+|-.|+.+|-+.. .
T Consensus 10 ~~~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~-sp~aw~~~~~iL~~---s~~~~vR~faa~~Lk~~I~~~W~~L~ 85 (1023)
T 4hat_C 10 SNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NPDAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLP 85 (1023)
T ss_dssp TSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-CTTGGGGHHHHHHH---CCCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred CCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHc-CccHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHhhhhcCC
Confidence 4555543333 6665656655688889888887654 34543333333432 557899988888876532 2
Q ss_pred hhhHHH----HHHHHHHHhcCC-----CHHHHHHHHHHHHHHHhh-ChhhHHhhHHHHHHhcCCC
Q psy4020 92 PEMSRD----LASEVERLMKSS-----NAYIRKKAALCAYRIILK-VPELMEIFLPATRLLLSDK 146 (530)
Q Consensus 92 ~el~~~----l~~~V~~~l~~~-----~~yVRK~A~la~~ki~~~-~p~~i~~~i~~l~~lL~d~ 146 (530)
++-.+. +...+.+...++ .++||.|.+.++..++++ +|+.=+.+++.+.+++...
T Consensus 86 ~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~ 150 (1023)
T 4hat_C 86 NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSS 150 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCC
Confidence 232333 334343333332 589999999999999886 4654455677777777543
No 117
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=85.89 E-value=25 Score=40.66 Aligned_cols=211 Identities=14% Similarity=0.139 Sum_probs=121.5
Q ss_pred ChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhc--CCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh------
Q psy4020 56 RQDVHLLITNSLKNDLNSSTQFVVGLALCTLGA--IASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILK------ 127 (530)
Q Consensus 56 ~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~--i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~------ 127 (530)
.++....+.+-|+++=-+..+....++ .... ..++++++.+...+..--..++|++|+.|++++..+.++
T Consensus 354 T~~a~~~i~~~i~~~~l~~~ea~~~l~--~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~ 431 (1056)
T 1lsh_A 354 TSEALLFLKRTLASEQLTSAEATQIVA--STLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTV 431 (1056)
T ss_dssp SHHHHHHHHHHHHTTCSCHHHHHHHHH--HHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHH--HhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCC
Confidence 334454555666653333334333333 2223 356666665554443222336899999999999887764
Q ss_pred --ChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhcc
Q psy4020 128 --VPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDI 205 (530)
Q Consensus 128 --~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l 205 (530)
.++.++.+.+.+.+.+...+.. -.+..|+.|..++. |...+.+.+++... ..... +....|..+|+.++-.+
T Consensus 432 ~c~~~~v~~i~~~l~~~~~~~~~~-~~~~~LkaLGN~g~--p~~l~~l~~~l~~~-~~~~~--~~~~rvr~aAi~ALr~~ 505 (1056)
T 1lsh_A 432 SCPDELLQPLHDLLSQSSDRAKEE-EIVLALKALGNAGQ--PNSIKKIQRFLPGQ-GKSLD--EYSTRVQAEAIMALRNI 505 (1056)
T ss_dssp SCCGGGTHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHTC--GGGHHHHHTTSTTS-SSCCC--CSCHHHHHHHHHTTTTG
T ss_pred CCCHHHHHHHHHHHHHHHhcCChH-HHHHHHHHhhccCC--hhHHHHHHHhhcCc-ccccc--ccchHHHHHHHHHHHHh
Confidence 2466777888888888766533 35567888888875 44445566665432 11111 11335777788777666
Q ss_pred CCC-hHHHHHHHHHHHHhc--cCCCchhHHHHHHHHHHHhccChH--HHHHHHHHHhhhccCCcHHHHHHHHHHHHhccC
Q psy4020 206 KSE-SGLRVLAVNILGRFL--LNNDKNIRYVALNTLLRTVYIDTS--AVQRHRNTILECLKDPDVSIRRRALELSFALVN 280 (530)
Q Consensus 206 ~~~-~~l~~~~v~~L~~lL--~s~d~niry~aL~~L~~l~~~~p~--~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n 280 (530)
... +.. +-+.+..+. ...++++|..|+..|.+ .+|. .++. ....+ -.|++..++.-...-+-.+++
T Consensus 506 ~~~~p~~---v~~il~~i~~n~~e~~EvRiaA~~~Lm~---t~P~~~~l~~-ia~~l--~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 506 AKRDPRK---VQEIVLPIFLNVAIKSELRIRSCIVFFE---SKPSVALVSM-VAVRL--RREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp GGTCHHH---HHHHHHHHHHCTTSCHHHHHHHHHHHHH---TCCCHHHHHH-HHHHH--TTCSCHHHHHHHHHHHHHHTT
T ss_pred hhhchHH---HHHHHHHHhcCCCCChHHHHHHHHHHHH---HCcCHHHHHH-HHHHH--hhCchHHHHHHHHHHHHHHHh
Confidence 542 332 223444444 35688899988877643 3442 3332 33333 366777777777777777776
Q ss_pred hhh
Q psy4020 281 SAN 283 (530)
Q Consensus 281 ~~N 283 (530)
.++
T Consensus 577 s~~ 579 (1056)
T 1lsh_A 577 SSN 579 (1056)
T ss_dssp CCS
T ss_pred cCC
Confidence 654
No 118
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=85.85 E-value=0.13 Score=49.48 Aligned_cols=167 Identities=17% Similarity=0.212 Sum_probs=103.6
Q ss_pred HHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhc
Q psy4020 64 TNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLL 143 (530)
Q Consensus 64 ~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL 143 (530)
...+.+-++++++.||..|...++. +.+.+++.|+++.||..|+..+ .++ .+..++
T Consensus 76 ~~~l~~L~~D~~~~VR~~aA~~L~~-----------~~L~~ll~D~d~~VR~~aA~~l------~~~-------~L~~L~ 131 (244)
T 1lrv_A 76 VEALTPLIRDSDEVVRRAVAYRLPR-----------EQLSALMFDEDREVRITVADRL------PLE-------QLEQMA 131 (244)
T ss_dssp GGGGGGGTTCSSHHHHHHHHTTSCS-----------GGGGGTTTCSCHHHHHHHHHHS------CTG-------GGGGGT
T ss_pred HHHHHHHccCcCHHHHHHHHHHCCH-----------HHHHHHHcCCCHHHHHHHHHhC------CHH-------HHHHHH
Confidence 3556777799999999999986531 3567889999999999988742 222 245667
Q ss_pred CCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhc
Q psy4020 144 SDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFL 223 (530)
Q Consensus 144 ~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL 223 (530)
.|.++.|-. .+.+ .+. + +.+..+++. .+..|..+++..+ . ...+..++
T Consensus 132 ~D~d~~VR~-~aA~---~l~---~-------~~l~~l~~D------~d~~VR~~aa~~l---~---------~~ll~~ll 179 (244)
T 1lrv_A 132 ADRDYLVRA-YVVQ---RIP---P-------GRLFRFMRD------EDRQVRKLVAKRL---P---------EESLGLMT 179 (244)
T ss_dssp TCSSHHHHH-HHHH---HSC---G-------GGGGGTTTC------SCHHHHHHHHHHS---C---------GGGGGGST
T ss_pred cCCCHHHHH-HHHH---hcC---H-------HHHHHHHcC------CCHHHHHHHHHcC---C---------HHHHHHHH
Confidence 888887721 1111 111 1 112122221 2556777777652 1 12455677
Q ss_pred cCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcCchhh
Q psy4020 224 LNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFK 303 (530)
Q Consensus 224 ~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~ 303 (530)
.+.++++|..+...+ .+ ..+..++.|+|..||..+.+-+- ..++..+.+.+..+|
T Consensus 180 ~D~d~~VR~aaa~~l------~~-------~~L~~Ll~D~d~~VR~~aa~~l~------------~~~L~~L~D~~~~VR 234 (244)
T 1lrv_A 180 QDPEPEVRRIVASRL------RG-------DDLLELLHDPDWTVRLAAVEHAS------------LEALRELDEPDPEVR 234 (244)
T ss_dssp TCSSHHHHHHHHHHC------CG-------GGGGGGGGCSSHHHHHHHHHHSC------------HHHHHHCCCCCHHHH
T ss_pred cCCCHHHHHHHHHhC------CH-------HHHHHHHcCCCHHHHHHHHHcCC------------HHHHHHccCCCHHHH
Confidence 788999999988763 11 23556788999999998887532 134445555566666
Q ss_pred hhhHHHHH
Q psy4020 304 AHCSSNIV 311 (530)
Q Consensus 304 ~~~i~~I~ 311 (530)
..+..++|
T Consensus 235 ~aa~~~L~ 242 (244)
T 1lrv_A 235 LAIAGRLG 242 (244)
T ss_dssp HHHHCCC-
T ss_pred HHHHHHhC
Confidence 66655443
No 119
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=83.97 E-value=29 Score=32.73 Aligned_cols=126 Identities=12% Similarity=0.046 Sum_probs=77.5
Q ss_pred cchhHHHHHHHHhccCCChHHHHHHHHHHHH-hccCCCchhHHHHHHHHHHHhc-cChHHHHHHHHHHhhhccCCcHHHH
Q psy4020 191 GNTILYETVLSIMDIKSESGLRVLAVNILGR-FLLNNDKNIRYVALNTLLRTVY-IDTSAVQRHRNTILECLKDPDVSIR 268 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~-lL~s~d~niry~aL~~L~~l~~-~~p~~~~~~~~~i~~~l~d~d~~Ir 268 (530)
...|.+-|+..+.+.... ..+...+.. +-....=-+|+.+-..+..++. .+|+.. ...+.....|++.-+|
T Consensus 84 ~deVR~~Av~lLg~~~~~----~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~---l~~~~~W~~d~n~~VR 156 (240)
T 3l9t_A 84 VYQVRMYAVFLFGYLSKD----KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKA---LPIIDEWLKSSNLHTR 156 (240)
T ss_dssp SHHHHHHHHHHHHHTTTS----HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTT---HHHHHHHHHCSSHHHH
T ss_pred chHHHHHHHHHHHhccCc----HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHH---HHHHHHHhcCCCHHHH
Confidence 568999999988777322 234445555 4334555699999999998885 778732 2345567889999999
Q ss_pred HHHHHHHHh----ccChhhHHHHHHHHHHHhhhcCchhhh-hhHHHHHHHHHhhCCCchhHHHH
Q psy4020 269 RRALELSFA----LVNSANVRSMMKELLIFLEKSEPDFKA-HCSSNIVLCAERFAPNKRWHLDT 327 (530)
Q Consensus 269 ~~aL~ll~~----l~n~~Nv~~Iv~eL~~yl~~~d~~~~~-~~i~~I~~la~k~~~~~~~~vd~ 327 (530)
|.|.+-+.. ..-..|-+.++.-|.....+ +..|.+ .+-..+..++... .+|+.+.
T Consensus 157 R~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D-~s~yVrKSVan~LrD~SK~~---Pd~V~~~ 216 (240)
T 3l9t_A 157 RAATEGLRIWTNRPYFKENPNEAIRRIADLKED-VSEYVRKSVGNALRDISKKF---PDLVKIE 216 (240)
T ss_dssp HHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTC-SCHHHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred HHHHHhhHHHhccchhhcCHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhhC---HHHHHHH
Confidence 999998633 12234545444444433333 344544 4446666666544 3355443
No 120
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=83.81 E-value=2.1 Score=45.64 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=93.4
Q ss_pred hhcCCCChhhhh---HHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCC
Q psy4020 69 NDLNSSTQFVVG---LALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSD 145 (530)
Q Consensus 69 kDL~s~n~~vr~---lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d 145 (530)
+++..+.=.+|= ++||-+..+... .+.+.+.+..+|.|.+..||-.||.++.-+. .|+.+...+..+-++|.+
T Consensus 270 ~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~LL~iLWd~L~~ 345 (800)
T 3oc3_A 270 GFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLDLVLEKCWKNIES 345 (800)
T ss_dssp TGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHHHHHHHHHHHHT
T ss_pred hhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHHHHHHHHHHHhhh
Confidence 344444444443 445544222221 5778899999999999999999999998887 677777666666665544
Q ss_pred C-CCcchHHHHHHHHHhhcCCChh--hHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHh
Q psy4020 146 K-NHAIHQVKILKLLRILGKNDVE--ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRF 222 (530)
Q Consensus 146 ~-n~~V~qi~iL~lL~~l~~~~~~--~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~l 222 (530)
. |-+..--.++++|..++...+. ....+...|.+.+. +.-.+|...+.+++..+- +....+. ..+++
T Consensus 346 LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLR------HtITSVR~AVL~TL~tfL-~~~~LRL---IFQNI 415 (800)
T 3oc3_A 346 EELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFT------SPVPEVRTSILNMVKNLS-EESIDFL---VAEVV 415 (800)
T ss_dssp CCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGT------CSSHHHHHHHHHHTTTCC-CHHHHHH---HHHHH
T ss_pred hcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhc------CCcHHHHHHHHHHHHHHH-hhhHHHH---HHHHH
Confidence 2 2233334567777776532211 00122222333333 235679988888887765 3333332 34455
Q ss_pred ccCCCchhHHHHHHHHH
Q psy4020 223 LLNNDKNIRYVALNTLL 239 (530)
Q Consensus 223 L~s~d~niry~aL~~L~ 239 (530)
|...+.+++-.+++.-.
T Consensus 416 LLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 416 LIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHCSCHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHH
Confidence 66777888877777653
No 121
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=82.85 E-value=13 Score=35.64 Aligned_cols=85 Identities=8% Similarity=0.133 Sum_probs=62.6
Q ss_pred CCchhHHHHHHHHHHHh-ccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhcc--ChhhHHHHHHHHHHHhhhcCchh
Q psy4020 226 NDKNIRYVALNTLLRTV-YIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALV--NSANVRSMMKELLIFLEKSEPDF 302 (530)
Q Consensus 226 ~d~niry~aL~~L~~l~-~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~--n~~Nv~~Iv~eL~~yl~~~d~~~ 302 (530)
++ ..|.-.|+...+++ ..+|.++.+....++.+..|++..+|+...+++...+ .++-+..++..|..++++.|+..
T Consensus 28 ~~-~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V 106 (257)
T 3gs3_A 28 SP-STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQV 106 (257)
T ss_dssp CH-HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHH
T ss_pred Cc-HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 44 58888888888854 4578888888888888777888889999988887766 44566677777777777667666
Q ss_pred hhhhHHHHH
Q psy4020 303 KAHCSSNIV 311 (530)
Q Consensus 303 ~~~~i~~I~ 311 (530)
.+.+|.+.+
T Consensus 107 ~K~~I~~~~ 115 (257)
T 3gs3_A 107 IKRVIQACG 115 (257)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655443
No 122
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=82.50 E-value=7.2 Score=39.73 Aligned_cols=84 Identities=8% Similarity=0.168 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHHh-ccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhcc--ChhhHHHHHHHHHHHhhhcCchhhhh
Q psy4020 229 NIRYVALNTLLRTV-YIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALV--NSANVRSMMKELLIFLEKSEPDFKAH 305 (530)
Q Consensus 229 niry~aL~~L~~l~-~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~--n~~Nv~~Iv~eL~~yl~~~d~~~~~~ 305 (530)
..|.-.|+.+.+++ ..+|.++.++...++.+-.|++..+|+-..+++...| ..+.+..++.-|..++.+.|+...+.
T Consensus 40 ~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~ 119 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKK 119 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 47888899998864 5789999889999998888989999999999998766 56677788888888888777777666
Q ss_pred hHHHHHH
Q psy4020 306 CSSNIVL 312 (530)
Q Consensus 306 ~i~~I~~ 312 (530)
+|.+.+.
T Consensus 120 ~I~~~ts 126 (386)
T 3o2t_A 120 AILTMTQ 126 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 123
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=80.92 E-value=2.6 Score=39.45 Aligned_cols=134 Identities=12% Similarity=0.018 Sum_probs=66.7
Q ss_pred HHHhhcCCCCchhHHHHHHHHhhccC-ChhHHHHHHHHHHhhcCCC-C-hhhhhHHHHHHhcCC--ChhhHHHHHHHHHH
Q psy4020 30 CLKLIASSRFTDKRIGYLGAMLLLDE-RQDVHLLITNSLKNDLNSS-T-QFVVGLALCTLGAIA--SPEMSRDLASEVER 104 (530)
Q Consensus 30 vikl~~S~~~~~Krl~YL~l~~~~~~-~~e~~~L~~Nsl~kDL~s~-n-~~vr~lALr~l~~i~--~~el~~~l~~~V~~ 104 (530)
+-.|.+++-++.+-++-+++...... .++..- .+..=+.+- | ..+=++| +.++.+. .|+ .+.+.+.+
T Consensus 60 ~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~l~----~~~~~l~~~~nWd~~D~~a-~~~~~~~~~~~~---~~~~~i~~ 131 (220)
T 2b6c_A 60 IEAYYQKTEREYQYVAIDLALQNVQRFSLEEVV----AFKAYVPQKAWWDSVDAWR-KFFGSWVALHLT---ELPTIFAL 131 (220)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHTGGGCCHHHHH----HGGGGTTTTCSHHHHHHHH-HHHHHHHHHSGG---GHHHHHHH
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHhhCCHHHHH----HHHHHhccCCcHHHHHHHH-HHHHHHHHHChH---HHHHHHHH
Confidence 34577777788888777777655422 222221 111112211 1 2222233 3233321 222 13345667
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHH
Q psy4020 105 LMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMN 174 (530)
Q Consensus 105 ~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~ 174 (530)
.+.|.+.++||.|+.+.+.- ....+ .+..++.+..++.|....| |..+==.|+.+++.+|+....++
T Consensus 132 W~~s~~~w~rR~ai~~~l~~-~~~~~-~~~~~~i~~~~~~d~~~yV-~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 132 FYGAENFWNRRVALNLQLML-KEKTN-QDLLKKAIIYDRTTEEFFI-QKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HTTCSSHHHHHHHHHTTTTC-GGGCC-HHHHHHHHHHTTTCCCHHH-HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHH-HHCCC-HHHHHHHHHHhCCChHHHH-HHHHHHHHHHHHhhCHHHHHHHH
Confidence 77777777777777766433 21111 1233444444555544433 55666667777777776544444
No 124
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=78.60 E-value=99 Score=35.37 Aligned_cols=259 Identities=13% Similarity=0.140 Sum_probs=158.5
Q ss_pred HHHHHHhhcCCCChhhhhHH---HHHHhcCCChhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHH----h
Q psy4020 63 ITNSLKNDLNSSTQFVVGLA---LCTLGAIASPEMSRDLASEVERLMKSS-NAYIRKKAALCAYRIILKVPELME----I 134 (530)
Q Consensus 63 ~~Nsl~kDL~s~n~~vr~lA---Lr~l~~i~~~el~~~l~~~V~~~l~~~-~~yVRK~A~la~~ki~~~~p~~i~----~ 134 (530)
..+.+..-+.+.+..||..| +.++....+|+-+..+.|.+...+.+. ..-.+-.|+-++-++....|+.+. +
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~ 175 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE 175 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 45677777788888888765 566777778888899999999999776 567777888888888888898764 6
Q ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHhhcC--CChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCC----C
Q psy4020 135 FLPATRLLLSDKNHAIHQVKILKLLRILGK--NDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKS----E 208 (530)
Q Consensus 135 ~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~--~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~----~ 208 (530)
.+|.+.+.+-|..+.|-. .-.+.+..+|. .+.++. .++..|-.++.+ +.=+=||++.+..-+- +
T Consensus 176 ~~p~~~~~~~d~k~~v~~-~~~~~~~~~~~~~~n~d~~-~~~~~~~~~~~~--------p~~~~~~~~~l~~~tfv~~v~ 245 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKA-AATAAMTKATETVDNKDIE-RFIPSLIQCIAD--------PTEVPETVHLLGATTFVAEVT 245 (986)
T ss_dssp HHHHHHHHTTCSSHHHHH-HHHHHHHHHGGGCCCTTTG-GGHHHHHHHHHC--------TTHHHHHHHHHTTCCCCSCCC
T ss_pred hhcchHhhcccCcHHHHH-HHHHHHHHHHhcCCCcchh-hhHHHHHHHhcC--------hhhhHHHHHHhhcCeeEeeec
Confidence 778888999998888822 22344444442 233332 333333333442 3447799988765431 2
Q ss_pred hHHHHHHHHHHHHhccCCCchhH---HHHHHHHHHHhccChHHHHHHHHHHhhhcc-----CCcH---HHHHHHHHHHHh
Q psy4020 209 SGLRVLAVNILGRFLLNNDKNIR---YVALNTLLRTVYIDTSAVQRHRNTILECLK-----DPDV---SIRRRALELSFA 277 (530)
Q Consensus 209 ~~l~~~~v~~L~~lL~s~d~nir---y~aL~~L~~l~~~~p~~~~~~~~~i~~~l~-----d~d~---~Ir~~aL~ll~~ 277 (530)
.......+..|.+=|..+...++ -++.+++.+|+ .+|..+.++...++.-++ -.|+ .+..+|++.|..
T Consensus 246 ~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv-~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 246 PATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLV-EDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC-CCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhc-CCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 33344566777777766666555 34566666665 467776766666655443 1233 566888999987
Q ss_pred ccCh------------hhHHHHHHHHHHHhhhc-CchhhhhhHHHHHHHHH-----hhCCCchhHHHHHHHHHH
Q psy4020 278 LVNS------------ANVRSMMKELLIFLEKS-EPDFKAHCSSNIVLCAE-----RFAPNKRWHLDTLLKVLV 333 (530)
Q Consensus 278 l~n~------------~Nv~~Iv~eL~~yl~~~-d~~~~~~~i~~I~~la~-----k~~~~~~~~vd~Ll~lL~ 333 (530)
..+. ..+..+...+.+-+... ...+....+.-++.++. |.-....|- ..+..+|.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 397 (986)
T 2iw3_A 325 VGNVGEDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWF-THITPYMT 397 (986)
T ss_dssp HHTCBTTTBCCCCCCTTCHHHHHHHHHHHTTTSCCCGGGHHHHHHHHHHHHHHHHTTCCSHHHHH-HHTHHHHT
T ss_pred hhccccccccccccccchHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhccccchhHHH-HHHHHHHH
Confidence 6543 22445545555544432 22333444444444432 222333454 44445554
No 125
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=78.19 E-value=3.7 Score=38.69 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=41.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHh-hChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHH
Q psy4020 100 SEVERLMKSSNAYIRKKAALCAYRIIL-KVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMN 174 (530)
Q Consensus 100 ~~V~~~l~~~~~yVRK~A~la~~ki~~-~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~ 174 (530)
+.+.+.+.|.++++||.|+.+...-+. .+|+ .+.+.+..++.|...- .|..+=-.|+.++..+|+....++
T Consensus 134 ~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~~---~~~~~i~~~~~d~~~y-V~kAvgW~Lr~~~k~~p~~v~~fl 205 (232)
T 3jxy_A 134 AYIPKWIASDNIWLQRAAILFQLKYKQKMDEE---LLFWIIGQLHSSKEFF-IQKAIGWVLREYAKTNPDVVWEYV 205 (232)
T ss_dssp GTHHHHHHSSCHHHHHHHHHTTTTCGGGCCHH---HHHHHHHHHTTCCCHH-HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHhCCCHH---HHHHHHHHhcCCHHHH-HHHHHHHHHHHHHhhCHHHHHHHH
Confidence 456677788888888888777644322 1222 3334444555554443 366666777777777776544443
No 126
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=76.73 E-value=9.2 Score=32.96 Aligned_cols=56 Identities=11% Similarity=-0.033 Sum_probs=38.4
Q ss_pred cchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHH
Q psy4020 191 GNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAV 249 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~ 249 (530)
+.+..+|-+-.|-. ++.--+.++..|.+-|.++++++++.+|..|..++......|
T Consensus 22 dw~~ileicD~I~~---~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f 77 (140)
T 3ldz_A 22 DWGLILDICDKVGQ---SRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIF 77 (140)
T ss_dssp CHHHHHHHHHHHTT---STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CHHHHHHHHHHHHC---CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHH
Confidence 55666675555432 222245677788888888999999999998888877644433
No 127
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=73.74 E-value=21 Score=31.09 Aligned_cols=85 Identities=13% Similarity=0.092 Sum_probs=54.4
Q ss_pred cchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHH------HHHHHHhhhccC--
Q psy4020 191 GNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQ------RHRNTILECLKD-- 262 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~------~~~~~i~~~l~d-- 262 (530)
+.+..+|-+-.|-.= . .--+.++..|.+-|.++++++++.+|..|-.++......|. ++...+..++.+
T Consensus 28 dw~~ileicD~I~~~-~--~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~ 104 (149)
T 3g2s_A 28 DWASINGFCEQLNED-F--EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKY 104 (149)
T ss_dssp CHHHHHHHHHHGGGS-S--SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTT
T ss_pred CHHHHHHHHHHHHCC-C--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccc
Confidence 556666766554322 2 22345677777777899999999999999888876544332 233444444432
Q ss_pred ----CcHHHHHHHHHHHHhc
Q psy4020 263 ----PDVSIRRRALELSFAL 278 (530)
Q Consensus 263 ----~d~~Ir~~aL~ll~~l 278 (530)
.+..+|.+.|+++..-
T Consensus 105 ~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 105 LGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp TGGGSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 4567777777777654
No 128
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=73.32 E-value=63 Score=37.39 Aligned_cols=203 Identities=15% Similarity=0.134 Sum_probs=109.0
Q ss_pred HHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCC-------hhhHHHHHHH
Q psy4020 29 ECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIAS-------PEMSRDLASE 101 (530)
Q Consensus 29 ~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~-------~el~~~l~~~ 101 (530)
.++..+-+++-..|+-+.-++..+- .+|+....+...+. .+.++.+|=.|+.+|-+... ++-...+-..
T Consensus 32 ~lv~~ly~p~~~~r~qA~~~L~q~q-~sp~aw~~~~~iL~---~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~ 107 (1073)
T 3gjx_A 32 NVVNCLYHGEGAQQRMAQEVLTHLK-EHPDAWTRVDTILE---FSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKY 107 (1073)
T ss_dssp HHHHTTTCSSHHHHHHHHHHHHTSS-CCSCHHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHH-cCchHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 3677777778888999988887754 45565433333332 24689999999888876432 3323333344
Q ss_pred HHHHh----cC-----CCHHHHHHHHHHHHHHHhh-ChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCC--C---
Q psy4020 102 VERLM----KS-----SNAYIRKKAALCAYRIILK-VPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKN--D--- 166 (530)
Q Consensus 102 V~~~l----~~-----~~~yVRK~A~la~~ki~~~-~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~--~--- 166 (530)
+...+ .+ .++.++.+.+.++..+++. +|+.=+.|++.+.+++...... ....|++|+.+... +
T Consensus 108 Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~--~~~~L~IL~~L~EEV~d~~~ 185 (1073)
T 3gjx_A 108 VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESL--CQNNMVILKLLSEEVFDFSS 185 (1073)
T ss_dssp HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHH--HHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHHHHhccc
Confidence 44333 22 3577888899999999876 4554344555555555322211 12233444433211 0
Q ss_pred ----h----hhH-------HHHHHHHHHHhhcccCCCCCcchhH---HHHHHHHhccCCChHHH-HHHHHHH-HHhccCC
Q psy4020 167 ----V----EAS-------EAMNDILAQVATNTETSKNVGNTIL---YETVLSIMDIKSESGLR-VLAVNIL-GRFLLNN 226 (530)
Q Consensus 167 ----~----~~~-------~~l~~iL~~~l~~~~~~~n~~~aV~---~eai~~i~~l~~~~~l~-~~~v~~L-~~lL~s~ 226 (530)
. +.. ..+.+++..++.+. .+..++ ++|+++++.+-.-..+. ...++.| ..+| +
T Consensus 186 ~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~-----~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L--~ 258 (1073)
T 3gjx_A 186 GQITQVKAKHLKDSMCNEFSQIFQLCQFVMENS-----QNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFL--N 258 (1073)
T ss_dssp HHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTS--S
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhc--C
Confidence 0 011 12334444444432 133444 35555555553211111 1123333 3444 5
Q ss_pred CchhHHHHHHHHHHHhcc
Q psy4020 227 DKNIRYVALNTLLRTVYI 244 (530)
Q Consensus 227 d~niry~aL~~L~~l~~~ 244 (530)
++..|-.|+++|..++..
T Consensus 259 ~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 259 VPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp SHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHhc
Confidence 678999999999998865
No 129
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=72.30 E-value=25 Score=38.45 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=57.0
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHhhccCChhHH-HH----HHHHHHhhcCCCChhhhhHHHHHHhcCC---ChhhHHH--
Q psy4020 28 LECLKLIASSRFTDKRIGYLGAMLLLDERQDVH-LL----ITNSLKNDLNSSTQFVVGLALCTLGAIA---SPEMSRD-- 97 (530)
Q Consensus 28 ~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~-~L----~~Nsl~kDL~s~n~~vr~lALr~l~~i~---~~el~~~-- 97 (530)
..+++.++|++...|..+..++..+....+... ++ +...+.+=|.++++.||--|..+|.++. .++++..
T Consensus 37 ~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~ 116 (684)
T 4gmo_A 37 LPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLY 116 (684)
T ss_dssp HHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence 468888999999999999999999996433222 22 3334556688999999999887777765 4566554
Q ss_pred ---HHHHHHHHhc
Q psy4020 98 ---LASEVERLMK 107 (530)
Q Consensus 98 ---l~~~V~~~l~ 107 (530)
+.+++..++.
T Consensus 117 ~~~il~~L~~~l~ 129 (684)
T 4gmo_A 117 RLDVLTAIEHAAK 129 (684)
T ss_dssp HTTHHHHHHHHHH
T ss_pred HcChHHHHHHHHH
Confidence 5556655554
No 130
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=72.22 E-value=9.9 Score=33.72 Aligned_cols=56 Identities=7% Similarity=-0.053 Sum_probs=38.3
Q ss_pred cchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHH
Q psy4020 191 GNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAV 249 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~ 249 (530)
+.+...|.+-.|-. ..+ --+.|+..|.+-|.++++++++.+|..|-.++......|
T Consensus 32 Dw~~~leicD~I~~-~~~--~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~F 87 (163)
T 1x5b_A 32 DWSLIMDICDKVGS-TPN--GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIF 87 (163)
T ss_dssp CHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHHhC-CCc--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 55666666655533 221 234577778888888999999999999888887644333
No 131
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=70.65 E-value=32 Score=32.15 Aligned_cols=128 Identities=9% Similarity=-0.005 Sum_probs=82.2
Q ss_pred HHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHH-----------HHHHHHhcCCCHHHHH
Q psy4020 47 LGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLA-----------SEVERLMKSSNAYIRK 115 (530)
Q Consensus 47 L~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~-----------~~V~~~l~~~~~yVRK 115 (530)
++..++..+..|..++++=.+. +..+.....=+.+..+.+.++++.++ ..+.+.+.|.+.++|+
T Consensus 52 la~~Lw~~~~~E~r~lA~li~~-----~~~~~~~~~~~~v~~~~nWd~~D~~~~~l~~~~~~~~~~~~~W~~s~~~w~rR 126 (235)
T 1t06_A 52 LAEELYATGNYDAMYFAGIIAD-----PKAMSESDFDRWIDGAYFYMLSDYVVAVTLSESNIAQDVADKWIASGDELKMS 126 (235)
T ss_dssp HHHHHHHTCCHHHHHHHHHHCC-----GGGCCHHHHHHHHHTCCSHHHHHHTHHHHHTTSSSHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHhhC-----HHhcCHHHHHHHHhCCCcHHHHHHHHHHHHhcCchHHHHHHHHHcCcHHHHHH
Confidence 4556666677787777772221 11122233344566777777776543 3456778889999999
Q ss_pred HHHHH----HHHHHhhC--hhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q psy4020 116 KAALC----AYRIILKV--PELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQV 180 (530)
Q Consensus 116 ~A~la----~~ki~~~~--p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~ 180 (530)
.|+.+ +.....+. ..-.+.+++.+...+.|.+..| |..+=-.|+.++..+|+.....+++-..+
T Consensus 127 ~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v-~kAi~W~Lr~~gk~~~~~~~~al~~~~~l 196 (235)
T 1t06_A 127 AGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERT-KSAMNNFLNTVAISYVPLHEKAVEIAKEV 196 (235)
T ss_dssp HHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Confidence 99983 34322222 2345567777777777766555 77777788888888888777777766655
No 132
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=70.64 E-value=14 Score=32.20 Aligned_cols=85 Identities=13% Similarity=0.084 Sum_probs=53.3
Q ss_pred cchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHH------HHHHHHHhhhccC--
Q psy4020 191 GNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAV------QRHRNTILECLKD-- 262 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~------~~~~~~i~~~l~d-- 262 (530)
+.+...|-+-.|-.- +.--+.|+..|.+-|.++++++++.+|..|-.++......| .++...+...+.+
T Consensus 18 dw~~~leicD~I~~~---~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~ 94 (148)
T 1mhq_A 18 DWSAIQNFCEQVNTD---PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKY 94 (148)
T ss_dssp CHHHHHHHHHHHHHS---SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCST
T ss_pred CHHHHHHHHHHHHcC---CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHcccc
Confidence 455666655544321 22234567777777789999999999999988887654433 2233344444432
Q ss_pred ----CcHHHHHHHHHHHHhc
Q psy4020 263 ----PDVSIRRRALELSFAL 278 (530)
Q Consensus 263 ----~d~~Ir~~aL~ll~~l 278 (530)
.+..+|.+.|+++..-
T Consensus 95 ~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 95 LGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp TSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 3567777777777653
No 133
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=70.21 E-value=49 Score=28.58 Aligned_cols=77 Identities=13% Similarity=0.011 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH------HhhHHHHHHhcCCCCC-----cchHHHHHHHHHh
Q psy4020 93 EMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELM------EIFLPATRLLLSDKNH-----AIHQVKILKLLRI 161 (530)
Q Consensus 93 el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i------~~~i~~l~~lL~d~n~-----~V~qi~iL~lL~~ 161 (530)
+-..+.+..+++-|.|++|.|--.|+.-+=-+.+.....+ ++|++.+..++.++++ .-.+-+++.++..
T Consensus 34 ~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (148)
T 1mhq_A 34 NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFS 113 (148)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHH
Confidence 3456677888888889999888777655555555443332 4799999999886432 2256677777776
Q ss_pred hc---CCChhh
Q psy4020 162 LG---KNDVEA 169 (530)
Q Consensus 162 l~---~~~~~~ 169 (530)
++ +.+|..
T Consensus 114 W~~~f~~~p~i 124 (148)
T 1mhq_A 114 WTVWFPEDIKI 124 (148)
T ss_dssp HHHHCTTCHHH
T ss_pred HHHHcCCCchH
Confidence 54 445553
No 134
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=68.50 E-value=41 Score=29.22 Aligned_cols=77 Identities=16% Similarity=0.059 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH------HhhHHHHHHhcCCCC-----CcchHHHHHHHHHhh
Q psy4020 94 MSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELM------EIFLPATRLLLSDKN-----HAIHQVKILKLLRIL 162 (530)
Q Consensus 94 l~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i------~~~i~~l~~lL~d~n-----~~V~qi~iL~lL~~l 162 (530)
-..+.+..+++-+.|++|.|--.|+.-+=-+.+.....+ ++|++.+..++.+++ +.-.+-+++.++..+
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 345566666666777777766665544444444433322 368888888887652 222566777777765
Q ss_pred c---CCChhhH
Q psy4020 163 G---KNDVEAS 170 (530)
Q Consensus 163 ~---~~~~~~~ 170 (530)
. +.+|...
T Consensus 125 ~~~f~~~p~i~ 135 (149)
T 3g2s_A 125 TVGLPEEVKIA 135 (149)
T ss_dssp HHHCTTCHHHH
T ss_pred HHHhCCCchHH
Confidence 4 4455543
No 135
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=68.11 E-value=65 Score=28.55 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=57.9
Q ss_pred cchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHH------HHHHHHhhhcc---
Q psy4020 191 GNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQ------RHRNTILECLK--- 261 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~------~~~~~i~~~l~--- 261 (530)
+.+...|.+-.|-.-. .--+.|+..|.+-|.++++++++.+|..|-.++......|. ++...+..++.
T Consensus 30 Dw~~ileicD~I~~~~---~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~ 106 (171)
T 1juq_A 30 DWEYIIGFCDQINKEL---EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKY 106 (171)
T ss_dssp CHHHHHHHHHHHHHST---THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHHHHcCC---ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhcccc
Confidence 5566666665554322 22345777788888899999999999999998887544332 23444455543
Q ss_pred ---CCcHHHHHHHHHHHHhcc
Q psy4020 262 ---DPDVSIRRRALELSFALV 279 (530)
Q Consensus 262 ---d~d~~Ir~~aL~ll~~l~ 279 (530)
..+..+|.++|+++..-+
T Consensus 107 ~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 107 LGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp CCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 236789999999988643
No 136
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=63.87 E-value=1.4e+02 Score=31.04 Aligned_cols=103 Identities=11% Similarity=-0.027 Sum_probs=86.8
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhc
Q psy4020 28 LECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMK 107 (530)
Q Consensus 28 ~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~ 107 (530)
-+|+.. ...+-..||++-=.+..|+..=|++.--++|++..=+.+.++.||-.|+|.|..++..+.+.-+..-+.++|.
T Consensus 32 ~~Il~~-~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLq 110 (507)
T 3u0r_A 32 QVILDG-VKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQ 110 (507)
T ss_dssp HHHHHG-GGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHh
Confidence 445553 4456899999999999999999999999999999989999999999999999999988899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhh
Q psy4020 108 SSNAYIRKKAALCAYRIILKVPEL 131 (530)
Q Consensus 108 ~~~~yVRK~A~la~~ki~~~~p~~ 131 (530)
..++--+...=-++..+++.+|..
T Consensus 111 tdd~~E~~~V~~sL~sllk~Dpk~ 134 (507)
T 3u0r_A 111 TDDSAEFNLVNNALLSIFKMDAKG 134 (507)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred ccchHHHHHHHHHHHHHHhcChHH
Confidence 887766655556666677778753
No 137
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=62.26 E-value=59 Score=27.74 Aligned_cols=71 Identities=21% Similarity=0.192 Sum_probs=38.0
Q ss_pred hccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCC---ChhhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy4020 52 LLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA---SPEMS-----RDLASEVERLMKSSNAYIRKKAALCAY 122 (530)
Q Consensus 52 ~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~---~~el~-----~~l~~~V~~~l~~~~~yVRK~A~la~~ 122 (530)
..+.+++-.--++-+|+|-|+++||.+.-+||..|-.+. .+.+. ......+.+++...++-||++..-.+.
T Consensus 32 ~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~ 110 (140)
T 3ldz_A 32 KVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMV 110 (140)
T ss_dssp HHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 334444445566677777787777777666665443211 11111 223333444444466777777654443
No 138
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=62.12 E-value=51 Score=28.98 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH------HhhHHHHHHhcCCCCCcchHHHHHHHHHhh
Q psy4020 96 RDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELM------EIFLPATRLLLSDKNHAIHQVKILKLLRIL 162 (530)
Q Consensus 96 ~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i------~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l 162 (530)
.+.+..|++-|.+++|.|.-.|+.-+=-+.+.....+ ++|++.+..++..+.+.-.+-+++.++..+
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W 123 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEW 123 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 3344444555555555554444333333333222111 245555555554333333344555555443
No 139
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=61.95 E-value=63 Score=29.96 Aligned_cols=66 Identities=12% Similarity=0.046 Sum_probs=47.7
Q ss_pred CCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHH
Q psy4020 72 NSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLP 137 (530)
Q Consensus 72 ~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~ 137 (530)
.|+|+++|=.|+-.+-.-....-.+.+...+..++.|++.||||...=++--+++++|+.+..|+.
T Consensus 141 ~s~~~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~ 206 (232)
T 3jxy_A 141 ASDNIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQ 206 (232)
T ss_dssp HSSCHHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 367787777776554332222223456666778888889999998888888888889998888875
No 140
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.90 E-value=79 Score=29.29 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=46.9
Q ss_pred HHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhc------------CCChhhHHHHHHHHHHHhcCCCHHH
Q psy4020 46 YLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGA------------IASPEMSRDLASEVERLMKSSNAYI 113 (530)
Q Consensus 46 YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~------------i~~~el~~~l~~~V~~~l~~~~~yV 113 (530)
-+.+.-..+.+++-.--++-+|+|=++++||.+.-+||..|-. |.+.++.+.+..-+. ...++-|
T Consensus 29 ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~---~~~~~~V 105 (226)
T 3zyq_A 29 ILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLK---RQVEVNV 105 (226)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHH---HCCCHHH
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhc---cCCCHHH
Confidence 3344444444555566778899999999999988888876544 345555544433332 2356788
Q ss_pred HHHHHHHHHH
Q psy4020 114 RKKAALCAYR 123 (530)
Q Consensus 114 RK~A~la~~k 123 (530)
|++++-.+..
T Consensus 106 k~kil~li~~ 115 (226)
T 3zyq_A 106 RNKILYLIQA 115 (226)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8886655443
No 141
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=57.30 E-value=1e+02 Score=27.22 Aligned_cols=76 Identities=12% Similarity=0.048 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH------HhhHHHHHHhcCCCC-----CcchHHHHHHHHHhh
Q psy4020 94 MSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELM------EIFLPATRLLLSDKN-----HAIHQVKILKLLRIL 162 (530)
Q Consensus 94 l~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i------~~~i~~l~~lL~d~n-----~~V~qi~iL~lL~~l 162 (530)
-..+....+++-+.+++|.|.-.|+.-+=-+.+.+...+ ++|++.+..++..+. +.-.+-++++++..+
T Consensus 47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 355667888888899999988887765555555544333 368999999887542 222577888888765
Q ss_pred c---CCChhh
Q psy4020 163 G---KNDVEA 169 (530)
Q Consensus 163 ~---~~~~~~ 169 (530)
. +.+|..
T Consensus 127 ~~~f~~~~~i 136 (171)
T 1juq_A 127 TMALPEEAKI 136 (171)
T ss_dssp HHHCTTCHHH
T ss_pred HHHcCCCcHH
Confidence 4 345543
No 142
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=56.67 E-value=70 Score=29.66 Aligned_cols=99 Identities=16% Similarity=0.129 Sum_probs=59.0
Q ss_pred cchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHH
Q psy4020 191 GNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRR 270 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~ 270 (530)
+.+..+|-+-.|-.=... -+.++..|.+-|.++++++++.+|..|..++..-...|...+ .+. .
T Consensus 25 dw~~ileicD~I~~~~~~---~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~ei-------as~------~ 88 (226)
T 3zyq_A 25 DWESILQICDLIRQGDTQ---AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEV-------ANK------Q 88 (226)
T ss_dssp CHHHHHHHHHHHHTTSSC---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHH-------SSH------H
T ss_pred CHHHHHHHHHHHhCCCcc---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhh-------ccH------H
Confidence 566777766665432112 245677777778899999999999988877765333332111 110 1
Q ss_pred HHHHHHhccChhhHHHHHHHHHHHh-hhcCchhhhhhHHHHHHHHHhhCCCc
Q psy4020 271 ALELSFALVNSANVRSMMKELLIFL-EKSEPDFKAHCSSNIVLCAERFAPNK 321 (530)
Q Consensus 271 aL~ll~~l~n~~Nv~~Iv~eL~~yl-~~~d~~~~~~~i~~I~~la~k~~~~~ 321 (530)
-++ +|.+.+ ...+.+.+.+++.-|..-++.|..+.
T Consensus 89 fl~----------------~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 124 (226)
T 3zyq_A 89 TME----------------ELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEP 124 (226)
T ss_dssp HHH----------------HHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCG
T ss_pred HHH----------------HHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 111 111111 12466788888888888888886654
No 143
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=55.44 E-value=36 Score=36.48 Aligned_cols=232 Identities=14% Similarity=0.054 Sum_probs=124.6
Q ss_pred hhcCCCCchhHHHHHHHHhhccCC-----------hhHHHHHHHHHHhh----cCCC--ChhhhhHHHHHHhcC--CChh
Q psy4020 33 LIASSRFTDKRIGYLGAMLLLDER-----------QDVHLLITNSLKND----LNSS--TQFVVGLALCTLGAI--ASPE 93 (530)
Q Consensus 33 l~~S~~~~~Krl~YL~l~~~~~~~-----------~e~~~L~~Nsl~kD----L~s~--n~~vr~lALr~l~~i--~~~e 93 (530)
-+-+++-+.|.=+-+++..+++.. .|++.-.+=.|.-| .-+. ---||--|-.+|+.+ ..++
T Consensus 182 DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL~hLp~e 261 (800)
T 3oc3_A 182 NLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRIYPLIGP 261 (800)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHHTTTSCS
T ss_pred HhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHHHhCChh
Confidence 344567777777788888876432 25544333344433 2221 123444443333333 1222
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcchHHHHHHHHHhhcCCChhhHHHH
Q psy4020 94 MSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAM 173 (530)
Q Consensus 94 l~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~~~~~~~~~l 173 (530)
. .+...+.+.+.++..-||--+.+++--+.....+ ++..++.+...|.|.|..|..+..--++... .|+....+
T Consensus 262 -~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p~~l~~L 335 (800)
T 3oc3_A 262 -N-DIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---ITDSLDLV 335 (800)
T ss_dssp -C-CHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CSSTHHHH
T ss_pred -H-HHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---chhhHHHH
Confidence 2 2222222445677888888888887655222222 5677888888899988888555444444333 33334444
Q ss_pred HHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHH
Q psy4020 174 NDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHR 253 (530)
Q Consensus 174 ~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~ 253 (530)
.+++=.++.+.+-- +++.+-++.-...++..+.+.......+.+|-.|+.++-+++|..+|+++..+. ...++.
T Consensus 336 L~iLWd~L~~LDDL-SASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL--~~~~LR--- 409 (800)
T 3oc3_A 336 LEKCWKNIESEELI-SVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS--EESIDF--- 409 (800)
T ss_dssp HHHHHHHHHTCCSC-CTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC--CHHHHH---
T ss_pred HHHHHHHhhhhccc-chhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH--hhhHHH---
Confidence 44444444433211 123333344444444333210000134556777888888999999999987776 333221
Q ss_pred HHHhhhccCCcHHHHHHHHHHHH
Q psy4020 254 NTILECLKDPDVSIRRRALELSF 276 (530)
Q Consensus 254 ~~i~~~l~d~d~~Ir~~aL~ll~ 276 (530)
-.+-++|=+++..|+..++++--
T Consensus 410 LIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 410 LVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 11223555777888888888774
No 144
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=55.08 E-value=48 Score=32.42 Aligned_cols=131 Identities=18% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhcCCCCCCCch---------HHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCCh
Q psy4020 6 QVINDAVERDTYLPKYPAHFGQ---------LECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQ 76 (530)
Q Consensus 6 ~ei~~~~~~~i~mlG~d~sf~~---------~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~ 76 (530)
.++..|+...+. +.||+.||. +.-+-+..+...+.|.++|-.+.-.++.+|+..-.+.+.
T Consensus 43 ~~le~aLD~L~E-lSHDi~~G~KI~~~ef~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~---------- 111 (315)
T 3qml_C 43 ARLEDSFDRIME-FAHDYKHGYKIITHEFALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINES---------- 111 (315)
T ss_dssp HHHHHHHHHHGG-GTTSHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHH-hhhhHHhhhHHHhCcHHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHh----------
Q ss_pred hhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChh-hHHhhHHHHHHhcCCC--CCcch
Q psy4020 77 FVVGLALCTLGAIASPEMSRDLASEVERLMKSS--NAYIRKKAALCAYRIILKVPE-LMEIFLPATRLLLSDK--NHAIH 151 (530)
Q Consensus 77 ~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~--~~yVRK~A~la~~ki~~~~p~-~i~~~i~~l~~lL~d~--n~~V~ 151 (530)
-|.++..+++.+...+... .+-+..|+.+++..-....|+ ....-++.|.+++.-. ++.+
T Consensus 112 --------------~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~~~~m~~L~~ly~~~~~d~~~- 176 (315)
T 3qml_C 112 --------------FPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLPIYSTVVLQNVYERNNKDKQL- 176 (315)
T ss_dssp --------------CTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC--CCHHHHHHHHHHTTTCHHH-
T ss_pred --------------ChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhhhccHHHHHHHHccCCCCHHH-
Q ss_pred HHHHHHHHHhh
Q psy4020 152 QVKILKLLRIL 162 (530)
Q Consensus 152 qi~iL~lL~~l 162 (530)
|++++.++..+
T Consensus 177 k~Kvl~li~d~ 187 (315)
T 3qml_C 177 QIKVLELISKI 187 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 145
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=47.59 E-value=1.4e+02 Score=25.87 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=53.5
Q ss_pred cchhHHHHHHHHhccCCChHHHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHhccChHHHHH------HHHH-Hhhhc--
Q psy4020 191 GNTILYETVLSIMDIKSESGLRVLAVNILGRFLL-NNDKNIRYVALNTLLRTVYIDTSAVQR------HRNT-ILECL-- 260 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~-s~d~niry~aL~~L~~l~~~~p~~~~~------~~~~-i~~~l-- 260 (530)
+.+...|.+-.|-. +.+ --+.|+..|.+-|. ++++++++.+|..|..++......|.. +... +...+
T Consensus 33 Dw~~~leicD~I~~-~~~--~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~ 109 (157)
T 1elk_A 33 DWALNMEICDIINE-TEE--GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILP 109 (157)
T ss_dssp CHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHST
T ss_pred CHHHHHHHHHHHhC-CCc--cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhcc
Confidence 56677776665532 222 23457777877776 478999999999998888765433322 2233 23333
Q ss_pred -cCCcHHHHHHHHHHHHhcc
Q psy4020 261 -KDPDVSIRRRALELSFALV 279 (530)
Q Consensus 261 -~d~d~~Ir~~aL~ll~~l~ 279 (530)
++++..+|.++++++..-+
T Consensus 110 k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 110 KNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp TTCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHH
Confidence 2344578888887776544
No 146
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=45.45 E-value=1.8e+02 Score=26.55 Aligned_cols=55 Identities=9% Similarity=-0.092 Sum_probs=36.2
Q ss_pred cchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHH
Q psy4020 191 GNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSA 248 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~ 248 (530)
+.+...|-+-.|-.-... -+.++..|.+-|.++++++++.+|..|..++..-...
T Consensus 22 dw~~~leicd~i~~~~~~---~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~ 76 (220)
T 1dvp_A 22 DWPSILLICDEINQKDVT---PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP 76 (220)
T ss_dssp CHHHHHHHHHHHHTTSSC---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH
T ss_pred CHHHHHHHHHhhcCCCcC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH
Confidence 556666655544321112 3456667777778899999999999888887654433
No 147
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=45.33 E-value=63 Score=29.67 Aligned_cols=70 Identities=10% Similarity=0.018 Sum_probs=43.9
Q ss_pred HHhhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhH
Q psy4020 67 LKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFL 136 (530)
Q Consensus 67 l~kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i 136 (530)
+.+=..|+|+++|=.|+-..-.-....-.+.+.+-+..++.|++-||||...=++--+++++|+.+..|+
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 3444567777777666554322222222344555555677777778877777777777777777777776
No 148
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=45.07 E-value=1.4e+02 Score=27.23 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=42.1
Q ss_pred HHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhc------------CCChhhHHHHHHHHHHHhc-CCCHHH
Q psy4020 47 LGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGA------------IASPEMSRDLASEVERLMK-SSNAYI 113 (530)
Q Consensus 47 L~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~------------i~~~el~~~l~~~V~~~l~-~~~~yV 113 (530)
+.+.-..+.+++-.--++-+|+|=|+++||.+.-+||..|-. |++.++.+.+.. ++. ..++-|
T Consensus 27 leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~----l~~~~~~~~V 102 (220)
T 1dvp_A 27 LLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSS----FLESTPHENV 102 (220)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHH----HHHHCSCHHH
T ss_pred HHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHH----HhcCCCcHHH
Confidence 333334444455555677889999999999998888866544 334444444433 333 346777
Q ss_pred HHHHH
Q psy4020 114 RKKAA 118 (530)
Q Consensus 114 RK~A~ 118 (530)
|++++
T Consensus 103 k~kil 107 (220)
T 1dvp_A 103 RQKML 107 (220)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77754
No 149
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=44.77 E-value=27 Score=40.15 Aligned_cols=110 Identities=13% Similarity=-0.017 Sum_probs=76.3
Q ss_pred hhcCCCC-chhHH-HHHHHHhhcc--CChhHHHHHHHHHHhhcC-CCChhhhhHHHHHHhc-------CCChhhHHHHHH
Q psy4020 33 LIASSRF-TDKRI-GYLGAMLLLD--ERQDVHLLITNSLKNDLN-SSTQFVVGLALCTLGA-------IASPEMSRDLAS 100 (530)
Q Consensus 33 l~~S~~~-~~Krl-~YL~l~~~~~--~~~e~~~L~~Nsl~kDL~-s~n~~vr~lALr~l~~-------i~~~el~~~l~~ 100 (530)
+...+|. ++.++ +|..+..+.. -.++.+-.+++++..-.+ +++- .|..+|.++-. +.+++-.+.+..
T Consensus 768 l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~ 846 (997)
T 1vsy_5 768 LVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILE 846 (997)
T ss_dssp TSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHH
T ss_pred HhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 3444444 56777 6666665542 245666678899977776 6677 99888888532 223344467889
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHHHHhhC-h-hhHHhhHHHHHHhc
Q psy4020 101 EVERLMKSSN-AYIRKKAALCAYRIILKV-P-ELMEIFLPATRLLL 143 (530)
Q Consensus 101 ~V~~~l~~~~-~yVRK~A~la~~ki~~~~-p-~~i~~~i~~l~~lL 143 (530)
.|.++|.|+. .-||..|+.++.-+.+-. | ..+++++..+.+.+
T Consensus 847 ~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~ 892 (997)
T 1vsy_5 847 FVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGL 892 (997)
T ss_dssp HHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSS
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9999999999 999999999999888766 5 44555555554433
No 150
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=43.73 E-value=77 Score=37.12 Aligned_cols=122 Identities=13% Similarity=0.083 Sum_probs=69.2
Q ss_pred cchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccC-----hHHHHHHHHHHhhhcc----
Q psy4020 191 GNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYID-----TSAVQRHRNTILECLK---- 261 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~-----p~~~~~~~~~i~~~l~---- 261 (530)
++++.-+|-..+-++..+++....+...|. -.+.++++|+.|+..|...+..+ ++.-..-+..++.++.
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~ 103 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTL 103 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSC
T ss_pred ChHHHHHHHHHHHHHHhCchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhcc
Confidence 344555555555444333221222222221 13567889999999998877553 2222222344444432
Q ss_pred ---CCcHHHHHHHHHHHHhccCh---hhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHH
Q psy4020 262 ---DPDVSIRRRALELSFALVNS---ANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAE 315 (530)
Q Consensus 262 ---d~d~~Ir~~aL~ll~~l~n~---~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~ 315 (530)
+++..||.+.-.++..++.. ++|.+++.+|.+.+.. +...+.-....+..+++
T Consensus 104 ~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 104 NILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp CTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 14678988877777776644 5888999998888754 43444444444555544
No 151
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=42.33 E-value=29 Score=36.17 Aligned_cols=65 Identities=25% Similarity=0.332 Sum_probs=50.5
Q ss_pred HHHHHHHhcc----------CCCchhHHHHHHHHHHHhccChH---HHHH--HHHHHhhhccCCcHHHHHHHHHHHHhcc
Q psy4020 215 AVNILGRFLL----------NNDKNIRYVALNTLLRTVYIDTS---AVQR--HRNTILECLKDPDVSIRRRALELSFALV 279 (530)
Q Consensus 215 ~v~~L~~lL~----------s~d~niry~aL~~L~~l~~~~p~---~~~~--~~~~i~~~l~d~d~~Ir~~aL~ll~~l~ 279 (530)
.+..|..+|. ++|+.+--+|+.=+.+++..+|. ++++ -...++.++.++|+.||..||-.+.++.
T Consensus 396 llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 396 IFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4456666664 35788999999999999999985 3333 2567788999999999999999887754
No 152
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=42.01 E-value=4e+02 Score=29.57 Aligned_cols=213 Identities=11% Similarity=0.030 Sum_probs=115.9
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh---hhH-HhhHHHHHHhcCC--CCCcchHHHHHHHHHhhc--
Q psy4020 92 PEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVP---ELM-EIFLPATRLLLSD--KNHAIHQVKILKLLRILG-- 163 (530)
Q Consensus 92 ~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p---~~i-~~~i~~l~~lL~d--~n~~V~qi~iL~lL~~l~-- 163 (530)
.++++.+.+.+..++-+++..+...|..|+-.+.-..| +++ +..+++++..|.. -...=-....|+.|..++
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~ 413 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRF 413 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHH
Confidence 45667788888899999999999999999999999888 876 5677888877765 221101122233333322
Q ss_pred -CCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhc------cCCC-hHH--H---HHHHHHHHHhccCC----
Q psy4020 164 -KNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMD------IKSE-SGL--R---VLAVNILGRFLLNN---- 226 (530)
Q Consensus 164 -~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~------l~~~-~~l--~---~~~v~~L~~lL~s~---- 226 (530)
..++.....+..+|...+..-+.+--.-....++.+..+.. ++.. ..+ . ...++.-..++.++
T Consensus 414 lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (799)
T 1vsy_4 414 IVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSK 493 (799)
T ss_dssp HTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSS
T ss_pred HhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccc
Confidence 22233334566666666655432100001244444444332 1111 100 0 00111111122211
Q ss_pred ----CchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCC-cH---HHHHHHHHHHHhccChhhHHHHHHHHHHHhhhc
Q psy4020 227 ----DKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDP-DV---SIRRRALELSFALVNSANVRSMMKELLIFLEKS 298 (530)
Q Consensus 227 ----d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~-d~---~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~ 298 (530)
|.+.- -+.+.......++.+..+...+|.++.+. +. .-=..+++.++.-++++=.+..++.+.+|+.+.
T Consensus 494 ~~~~d~~~~---~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~~n 570 (799)
T 1vsy_4 494 TFRVDDELL---NNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFWSN 570 (799)
T ss_dssp SCCCCTTHH---HHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHSC
T ss_pred cccccHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 11111 11122223345667777778888777632 21 223456788888889999999999999999764
Q ss_pred CchhhhhhH
Q psy4020 299 EPDFKAHCS 307 (530)
Q Consensus 299 d~~~~~~~i 307 (530)
...-..+.+
T Consensus 571 ~~~~a~~~v 579 (799)
T 1vsy_4 571 DSFKEKDPN 579 (799)
T ss_dssp SCCCSSSCC
T ss_pred hhhhHHHHH
Confidence 332233444
No 153
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=40.62 E-value=69 Score=29.72 Aligned_cols=69 Identities=9% Similarity=-0.007 Sum_probs=46.4
Q ss_pred CchhHHHHHHHHHHHhccChH---HH--HHHHHHHhhhccCCcHHHHHHHHHHHHhccChh---h-HHHHHHHHHHHh
Q psy4020 227 DKNIRYVALNTLLRTVYIDTS---AV--QRHRNTILECLKDPDVSIRRRALELSFALVNSA---N-VRSMMKELLIFL 295 (530)
Q Consensus 227 d~niry~aL~~L~~l~~~~p~---~~--~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~---N-v~~Iv~eL~~yl 295 (530)
+....+.++++|..+....+. ++ ......+..++..+.+.+|+.++++|..+|.-+ . ...+++-|..|-
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~ 144 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERA 144 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Confidence 345667777777666543221 11 112456777899999999999999999888543 4 777777777653
No 154
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=38.77 E-value=1.8e+02 Score=33.34 Aligned_cols=123 Identities=10% Similarity=0.028 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHhccC-----hHHHHHHHHHHhhhccCCc-HHHHHHHHHHHHhc--c
Q psy4020 209 SGLRVLAVNILGRFLL-NNDKNIRYVALNTLLRTVYID-----TSAVQRHRNTILECLKDPD-VSIRRRALELSFAL--V 279 (530)
Q Consensus 209 ~~l~~~~v~~L~~lL~-s~d~niry~aL~~L~~l~~~~-----p~~~~~~~~~i~~~l~d~d-~~Ir~~aL~ll~~l--~ 279 (530)
++....+++.+..... ++.- .|..+|..+..+.-++ ++....-...++.+|.|+. ..||..|-+.|..+ |
T Consensus 796 ~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c 874 (997)
T 1vsy_5 796 KNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHN 874 (997)
T ss_dssp HHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHc
Confidence 4444455555555554 3344 8999988876666432 1222344566778899999 99999999999887 4
Q ss_pred C-h-hhHHHHHHHHHHHhhh---c---------CchhhhhhHHHHHHHHHhhCCC---chhHHHHHHHHH
Q psy4020 280 N-S-ANVRSMMKELLIFLEK---S---------EPDFKAHCSSNIVLCAERFAPN---KRWHLDTLLKVL 332 (530)
Q Consensus 280 n-~-~Nv~~Iv~eL~~yl~~---~---------d~~~~~~~i~~I~~la~k~~~~---~~~~vd~Ll~lL 332 (530)
. . ..++.++..+.+-+.. . +..-|-..|-+++.+..-||=+ ..|.=++|..+-
T Consensus 875 ~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La 944 (997)
T 1vsy_5 875 WKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLS 944 (997)
T ss_dssp CCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHH
Confidence 4 3 4445555544443311 0 0123345666777777888755 468888775543
No 155
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=37.61 E-value=70 Score=32.26 Aligned_cols=71 Identities=10% Similarity=0.002 Sum_probs=49.5
Q ss_pred CCchhHHHHHHHHHHHhccChH---HH--HHHHHHHhhhccCCcHHHHHHHHHHHHhccCh---hh-HHHHHHHHHHHhh
Q psy4020 226 NDKNIRYVALNTLLRTVYIDTS---AV--QRHRNTILECLKDPDVSIRRRALELSFALVNS---AN-VRSMMKELLIFLE 296 (530)
Q Consensus 226 ~d~niry~aL~~L~~l~~~~p~---~~--~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~---~N-v~~Iv~eL~~yl~ 296 (530)
.|.++.|.++++|..+...... ++ ......+..|+..+.+.+|+.++++|..+|.- +| .+.+++-+-.|-.
T Consensus 132 ~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~ 211 (383)
T 3eg5_B 132 YDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 211 (383)
T ss_dssp -CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHH
Confidence 3557778888887777643221 11 12345677889999999999999999888743 45 8888888776643
No 156
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=34.20 E-value=1.1e+02 Score=26.11 Aligned_cols=56 Identities=7% Similarity=0.054 Sum_probs=41.7
Q ss_pred hhhhHHHHHHhcCC---ChhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH
Q psy4020 77 FVVGLALCTLGAIA---SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELM 132 (530)
Q Consensus 77 ~vr~lALr~l~~i~---~~el~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i 132 (530)
---|-.+.-|+++. ..+.++.+++.+.+-|++++++|+-||+-.+-++.++-++.+
T Consensus 26 ~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f 84 (140)
T 1vdy_A 26 VAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEF 84 (140)
T ss_dssp CCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHH
T ss_pred CCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHH
Confidence 33444455555543 346778999999999999999999999999998887655433
No 157
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=34.03 E-value=3.8e+02 Score=27.05 Aligned_cols=196 Identities=16% Similarity=0.162 Sum_probs=104.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH---Hh-hHHHHHHhcCCCCCcchHHHHHHHHHhhc-----CCCh
Q psy4020 97 DLASEVERLMKSSNAYIRKKAALCAYRIILKVPELM---EI-FLPATRLLLSDKNHAIHQVKILKLLRILG-----KNDV 167 (530)
Q Consensus 97 ~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i---~~-~i~~l~~lL~d~n~~V~qi~iL~lL~~l~-----~~~~ 167 (530)
..+-.+..++.+.+|.=|-..-..+.++|.+....- +. .-+.+...+.+..+..+...+|+++..+. |-.+
T Consensus 129 ~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke 208 (403)
T 3fga_B 129 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 208 (403)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH
Confidence 355667778889999999888888888998876532 22 22333444434333233345666665542 2223
Q ss_pred hhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhcc-Ch
Q psy4020 168 EASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYI-DT 246 (530)
Q Consensus 168 ~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~-~p 246 (530)
+-..-+.++|-++-... +. ..-+.-+..|+..++ ..++.+...++..|.++==..++.-.-.-|.-+..++.. .|
T Consensus 209 ehk~fl~~vLlPLHk~~-~~-~~y~~qL~ycv~qf~--eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~ 284 (403)
T 3fga_B 209 EHKIFLLKVLLPLHKVK-SL-SVYHPQLAYCVVQFL--EKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEP 284 (403)
T ss_dssp HHHHHHHHTTTGGGGST-TG-GGTHHHHHHHHHHHH--HHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHcCC-cc-hhhHHHHHHHHHHHH--HhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCH
Confidence 22222333333322211 00 001122334443333 356666666666665553233444445555666666654 45
Q ss_pred HHHHHHHH----HHhhhccCCcHHHHHHHHHHH-----HhccChhhHHHHHHHHHHHhhh
Q psy4020 247 SAVQRHRN----TILECLKDPDVSIRRRALELS-----FALVNSANVRSMMKELLIFLEK 297 (530)
Q Consensus 247 ~~~~~~~~----~i~~~l~d~d~~Ir~~aL~ll-----~~l~n~~Nv~~Iv~eL~~yl~~ 297 (530)
.-+++... .+-.|+.++.-.|..+||.+. ..+. .+|...|+.-+..-+.+
T Consensus 285 ~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li-~~n~~~IlPii~p~L~~ 343 (403)
T 3fga_B 285 SEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI-SDNAAKILPIMFPSLYR 343 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH-HTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHH-HHhHHHHHHHHHHHHHH
Confidence 55554443 344688898888999998764 2222 34555555555555543
No 158
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=33.82 E-value=5.1e+02 Score=30.52 Aligned_cols=157 Identities=13% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhhHHhhHHHHHHhcCCCCCcc---hHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhcc
Q psy4020 129 PELMEIFLPATRLLLSDKNHAI---HQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDI 205 (530)
Q Consensus 129 p~~i~~~i~~l~~lL~d~n~~V---~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l 205 (530)
|.+++.+++++.+...+....- +--.|+.=|+-+-..-+. +.+.+-+.++++.. ...+--|.+..+-++
T Consensus 113 ~~li~~Llekl~E~~~~~~~~~~~~l~rLIl~QlRwLD~ivd~--~~l~~ki~~vl~va------p~~lQ~diI~sLPeI 184 (1323)
T 3s4w_B 113 PAIIKMLFEKVPQFLFESENRDGINMARLIINQLKWLDRIVDG--KDLTAQMMQLISVA------PVNLQHDFITSLPEI 184 (1323)
T ss_dssp HHHHHHHHHHHHHHHSCCCCTTCCCHHHHHHGGGTTCSCCSSH--HHHHHHHHHHHHHS------CTTTHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCccccHHHHHHHHHhhhcccCCH--HHHHHHHHHHHHhC------cHHHHHHHHHHhHHH
Q ss_pred CCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHH
Q psy4020 206 KSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVR 285 (530)
Q Consensus 206 ~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~ 285 (530)
-.+++ ...++..|..+|.. ++.+.-.+|+.|..+ .-.++...+.+..++.++.+-+...==-.+..+++-++.+|+.
T Consensus 185 l~ds~-H~~v~~~L~~lL~~-~~~L~~~iLdaLs~L-~Ls~~~l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~ 261 (1323)
T 3s4w_B 185 LGDSQ-HANVGKELGELLVQ-NTSLTVPILDVFSSL-RLDPNFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSL 261 (1323)
T ss_dssp SCGGG-HHHHHHHHHHHHHH-CSTTHHHHHHHHHHS-CCCHHHHHHHHHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHH
T ss_pred hcchh-hHHHHHHHHHHHhc-CcchHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhccCChhhhHHHHHHHHHhCCHhhHH
Q ss_pred HHHHHHHHHhh
Q psy4020 286 SMMKELLIFLE 296 (530)
Q Consensus 286 ~Iv~eL~~yl~ 296 (530)
+++.+|.+-+.
T Consensus 262 evI~~LR~~L~ 272 (1323)
T 3s4w_B 262 EVIAELRENLN 272 (1323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
No 159
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=32.32 E-value=1.6e+02 Score=25.22 Aligned_cols=71 Identities=20% Similarity=0.119 Sum_probs=45.3
Q ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHHhccChH-HH---HHHHHHHhhhcc-----C----Cc--HHHHHHHHHHHHh
Q psy4020 213 VLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTS-AV---QRHRNTILECLK-----D----PD--VSIRRRALELSFA 277 (530)
Q Consensus 213 ~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~-~~---~~~~~~i~~~l~-----d----~d--~~Ir~~aL~ll~~ 277 (530)
..+...|.+-|.++++|++|=+|+.|..++...++ ++ ++|...|-.|.. | +| ..||.+|=+++-.
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~l 127 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISA 127 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHH
Confidence 34455566666778899999999999999876443 32 344443333321 2 12 4588888887777
Q ss_pred ccChhh
Q psy4020 278 LVNSAN 283 (530)
Q Consensus 278 l~n~~N 283 (530)
|-++++
T Consensus 128 l~d~~~ 133 (140)
T 1vdy_A 128 IFSEEN 133 (140)
T ss_dssp HTCCSS
T ss_pred HhCcCC
Confidence 766554
No 160
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=30.26 E-value=4.6e+02 Score=26.85 Aligned_cols=197 Identities=16% Similarity=0.159 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH---H-hhHHHHHHhcCCCCCcchHHHHHHHHHhhcC-----CC
Q psy4020 96 RDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELM---E-IFLPATRLLLSDKNHAIHQVKILKLLRILGK-----ND 166 (530)
Q Consensus 96 ~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i---~-~~i~~l~~lL~d~n~~V~qi~iL~lL~~l~~-----~~ 166 (530)
+..+..+..++.+.+|.-|-..-..+.+||.+....- + .+-+.+...+.+..+..+-..+|+++..+.. -.
T Consensus 161 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLK 240 (449)
T 2npp_B 161 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK 240 (449)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCc
Confidence 4456667778888899888887777888888775542 2 2223344444443333334466777765532 23
Q ss_pred hhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhcc-C
Q psy4020 167 VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYI-D 245 (530)
Q Consensus 167 ~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~-~ 245 (530)
++-..-+.++|-++.... .. ..-+.=+-.|+..++ ..++.+...++..|.++==-.++.-.-.-|.-+..++.. .
T Consensus 241 eehk~fl~~vLlPLhk~~-~l-~~y~~qL~ycv~qf~--eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~ 316 (449)
T 2npp_B 241 EEHKIFLLKVLLPLHKVK-SL-SVYHPQLAYCVVQFL--EKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIE 316 (449)
T ss_dssp HHHHHHHHHTTGGGGGSS-CG-GGTHHHHHHHHHHHH--HHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHccc-hh-HHhHHHHHHHHHHHH--hcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCC
Confidence 332222333333332211 00 001122334444333 356666666666665553223344445556666667653 4
Q ss_pred hHHHHHHHH----HHhhhccCCcHHHHHHHHHHHH-----hccChhhHHHHHHHHHHHhhh
Q psy4020 246 TSAVQRHRN----TILECLKDPDVSIRRRALELSF-----ALVNSANVRSMMKELLIFLEK 297 (530)
Q Consensus 246 p~~~~~~~~----~i~~~l~d~d~~Ir~~aL~ll~-----~l~n~~Nv~~Iv~eL~~yl~~ 297 (530)
|.-+++... .+-.|+.++...|..+||.+.- .+. .+|...|+.-+..-+.+
T Consensus 317 ~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li-~~n~~~IlPii~p~L~~ 376 (449)
T 2npp_B 317 PSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI-SDNAAKILPIMFPSLYR 376 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH-HTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHH-HhchhhhHHhhHHHHHH
Confidence 555544333 3446889988899999986542 222 34566666666555543
No 161
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=28.72 E-value=2.2e+02 Score=22.68 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=44.2
Q ss_pred EeCCCcEEEEEeecCCCCCCeEEEEEEEeeCCcccccceEEEEeecCceEEEeeCCCCCCCCCCCCceEEEEE
Q psy4020 426 YDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPPSDTNIPPGSQVTQTLRV 498 (530)
Q Consensus 426 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l~l~p~Sg~~l~~~~~itQ~~~i 498 (530)
|.+..|+|++. ..+.-...+.+.++|+|--+.+++|-.|.+-=|=-++=+-..- .+++|++.++..+.+
T Consensus 3 ~~~P~i~I~v~--g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~~~--~~v~pg~~~~~~~~~ 71 (102)
T 2xzz_A 3 YFQSMLSLTLL--GAAVVGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKILNV--GDIGGNETVTLRQSF 71 (102)
T ss_dssp ---CEEEEEES--SCCCSSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEEEE--CCBCTTCEEEEEEEE
T ss_pred ccCCcEEEEEC--CCcccCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEEEc--CcCCCCCEEEEEEEE
Confidence 45566666653 2222235699999999999999999999976553322211111 338888888888877
No 162
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=25.31 E-value=1.7e+02 Score=25.33 Aligned_cols=86 Identities=14% Similarity=0.021 Sum_probs=50.6
Q ss_pred cchhHHHHHHHHhccCCChHHHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHhccChHHHHHH------HHH-HhhhccC
Q psy4020 191 GNTILYETVLSIMDIKSESGLRVLAVNILGRFLL-NNDKNIRYVALNTLLRTVYIDTSAVQRH------RNT-ILECLKD 262 (530)
Q Consensus 191 ~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~-s~d~niry~aL~~L~~l~~~~p~~~~~~------~~~-i~~~l~d 262 (530)
+.+..+|.+-.|-. +. .--+.|+..|.+-|. +.++++.+.+|..|..++..-...|... ..+ +...+.+
T Consensus 33 Dw~~ileicD~In~-~~--~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~ 109 (152)
T 3rru_A 33 DWGQFMHICDIINT-TQ--DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNP 109 (152)
T ss_dssp CHHHHHHHHHHHHH-ST--THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSG
T ss_pred cHHHHHHHHHHHhC-CC--ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcC
Confidence 55667776655433 22 223456677777666 3577888999998888887755544322 222 2223332
Q ss_pred ---CcHHHHHHHHHHHHhcc
Q psy4020 263 ---PDVSIRRRALELSFALV 279 (530)
Q Consensus 263 ---~d~~Ir~~aL~ll~~l~ 279 (530)
.+..+|.+.|+++...+
T Consensus 110 ~~~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 110 RYNLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp GGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHH
Confidence 23457777777776654
No 163
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=24.36 E-value=1.6e+02 Score=29.53 Aligned_cols=69 Identities=9% Similarity=-0.007 Sum_probs=44.7
Q ss_pred CchhHHHHHHHHHHHhccChH---HHH--HHHHHHhhhccCCcHHHHHHHHHHHHhccChh---h-HHHHHHHHHHHh
Q psy4020 227 DKNIRYVALNTLLRTVYIDTS---AVQ--RHRNTILECLKDPDVSIRRRALELSFALVNSA---N-VRSMMKELLIFL 295 (530)
Q Consensus 227 d~niry~aL~~L~~l~~~~p~---~~~--~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~---N-v~~Iv~eL~~yl 295 (530)
+....+.++++|..+....+. ++. .....+..++..+.+.+|+.++++|..+|.-+ . ...|++-|-.|.
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~ 148 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERA 148 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Confidence 345566666666666543221 111 12455677888888999999999999888643 3 667777766653
No 164
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=23.99 E-value=3.1e+02 Score=27.79 Aligned_cols=113 Identities=20% Similarity=0.254 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhhhhcCCCCCCCchHHHHHhhcC--CC--CchhHHHHHHHH-hhc---------cCChhHHHHHHHHHHh
Q psy4020 4 IRQVINDAVERDTYLPKYPAHFGQLECLKLIAS--SR--FTDKRIGYLGAM-LLL---------DERQDVHLLITNSLKN 69 (530)
Q Consensus 4 i~~ei~~~~~~~i~mlG~d~sf~~~~vikl~~S--~~--~~~Krl~YL~l~-~~~---------~~~~e~~~L~~Nsl~k 69 (530)
||+.+.+..-+|++ +.+-+.|.-|+++.+.| +. ..+|.-.-.++. .++ ...++++..++..+.|
T Consensus 167 Irk~innif~~fiy--e~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK 244 (403)
T 3fga_B 167 IRKQINNIFYRFIY--ETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK 244 (403)
T ss_dssp HHHHHHHHHHHHHH--TTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh
Confidence 56667776677775 33345565555544333 11 122222211111 111 1124566667777777
Q ss_pred hcCCCChhhhhH--------------HHHH---HhcCCChh----hHHHHHHHHHHHhcCCCHHHHHHHH
Q psy4020 70 DLNSSTQFVVGL--------------ALCT---LGAIASPE----MSRDLASEVERLMKSSNAYIRKKAA 118 (530)
Q Consensus 70 DL~s~n~~vr~l--------------ALr~---l~~i~~~e----l~~~l~~~V~~~l~~~~~yVRK~A~ 118 (530)
|-+-..+.++|+ -|.- +.....|+ +...+...+.+|+.+++--|--+|+
T Consensus 245 Dp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL 314 (403)
T 3fga_B 245 DSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERAL 314 (403)
T ss_dssp CGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred CchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 766666666665 2222 22223333 3355677777888888887777665
No 165
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=22.32 E-value=2.3e+02 Score=22.81 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=36.7
Q ss_pred CcEEEEEeecCCCCCCeEEEEEEEeeCCcccccceEEEEeecCceEE
Q psy4020 430 GVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQL 476 (530)
Q Consensus 430 ~l~i~~~~~~~~~~~~~~~~~~~~~n~~~~~i~~~~fq~AVpK~~~l 476 (530)
|..+++.+..+. ++-....++.+|++..+|++-++....|...++
T Consensus 2 gc~v~y~v~~~W--~~Gf~~~vtVtN~g~~~i~gWtv~~~~p~g~~i 46 (107)
T 3ndz_E 2 AVEVTYAITNSW--GSGASVNVTIKNNGTTPINGWTLKWTMPINQTI 46 (107)
T ss_dssp CEEEEEEEEEEC--SSEEEEEEEEEECSSSCEESCEEEEECCTTEEE
T ss_pred ccEEEEEEcccC--CCCEEEEEEEEeCCCCcccCcEEEEEcCCCCEE
Confidence 667788877777 455788888999999999999999888876655
No 166
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=22.22 E-value=3.6e+02 Score=22.80 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=54.5
Q ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccChhhHHHHHHHHH
Q psy4020 213 VLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELL 292 (530)
Q Consensus 213 ~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~ 292 (530)
.-.+.-|...|.+ .| +-+-..+..+...+|+.+.+|+..++ +++|..=+--.|+.+..-.+.+++..+..||.
T Consensus 30 ~p~lp~LL~WLQD--~N--WPvA~~i~~~L~~~~~~l~p~I~~vl---~s~D~~W~ywil~~lv~~~~~~~~~~l~~eL~ 102 (134)
T 3ut4_A 30 EPIIFDLLKWLQD--YN--WPIAKDILPVVVLHQSIAMPHILTIL---QGNDIMWKYWVIKLMIPYLIYPNKQLVKSELE 102 (134)
T ss_dssp HHHHHHHHGGGSC--TT--STTHHHHHHHHHHTHHHHHHHHHHHH---HSSCHHHHHHHHHHHGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CC--CccHHHHHHHHHHccHhhHHHHHHHH---HcCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3345556666653 22 33333444555567777887777766 56777888888888888889999999999999
Q ss_pred HHhhh
Q psy4020 293 IFLEK 297 (530)
Q Consensus 293 ~yl~~ 297 (530)
.-+..
T Consensus 103 rl~~~ 107 (134)
T 3ut4_A 103 RLSSL 107 (134)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 88765
Done!