RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4020
(530 letters)
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 336 bits (862), Expect = e-108
Identities = 244/396 (61%), Positives = 288/396 (72%), Gaps = 64/396 (16%)
Query: 1 MSSIRQVIN--DAVERDTYLPK--------YPAHFGQLECLKLIASSRFTDKRIGYLGAM 50
++IR D R + K YPAHFGQLECLKLIAS +FTDKRIGYLGAM
Sbjct: 36 CAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAM 95
Query: 51 LLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSN 110
LLLDERQDVHLL+TN +KNDLN STQFV GLALCTLG + S EM RDLA EVE+L+K+SN
Sbjct: 96 LLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSN 155
Query: 111 AYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNH-----------AIHQ------- 152
+Y+RKKAALCA +I KVPELME+FLPAT+ LL++KNH + +
Sbjct: 156 SYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215
Query: 153 ---------VKILK---------------------------LLRILGKNDVEASEAMNDI 176
V+ILK LLRILG+ND ++SEAMNDI
Sbjct: 216 HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDI 275
Query: 177 LAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALN 236
LAQVATNTETSKNVGN ILYETVL+IMDIKSESGLRVLA+NILGRFLLNNDKNIRYVAL
Sbjct: 276 LAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALT 335
Query: 237 TLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLE 296
+LL+TV D +AVQRHR+TI++CLKD DVSI+RRA+ELSFALVN N+R MMKELL FL+
Sbjct: 336 SLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLD 395
Query: 297 KSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVL 332
EP+FKA C+S I L AE++AP+KRWH+DT+++VL
Sbjct: 396 SCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVL 431
Score = 27.9 bits (62), Expect = 9.8
Identities = 29/225 (12%), Positives = 71/225 (31%), Gaps = 9/225 (4%)
Query: 71 LNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPE 130
L + A+ A+ + R + E+ + S + A + K
Sbjct: 359 LKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAP 418
Query: 131 LMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNV 190
+ +L+ + + L++++ + + + + + + V
Sbjct: 419 SKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLV 478
Query: 191 GNTIL----YETVLSIMDIKSESGLRVLAVNILGRFLL-----NNDKNIRYVALNTLLRT 241
Y +L + E ++V +L + R AL +++
Sbjct: 479 QVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKL 538
Query: 242 VYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRS 286
T V R + + DV +++RA+E + ++RS
Sbjct: 539 STRFTCTVNRIKKVVSIYGSSIDVELQQRAVEYNALFKKYDHMRS 583
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 279 bits (715), Expect = 7e-87
Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 82/414 (19%)
Query: 1 MSSIRQVINDAVERDTYLPK-------------YPAHFGQLECLKLIASSRFTDKRIGYL 47
+++IR D Y K + FG +E + L++S+R+T+K+IGYL
Sbjct: 37 LANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYL 96
Query: 48 GAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMK 107
+L++ ++ LI N++KNDL S +GLAL + + S EM+ A E+ +++
Sbjct: 97 FISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILV 156
Query: 108 S--SNAYIRKKAALCAYRIILKVPELMEI--FLPATRLLLSDKNH-----------AIHQ 152
+ + +++ AALC R+ P+L+ + + LL+D++ + Q
Sbjct: 157 AGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216
Query: 153 -------------VKILK-----------------------------LLRILGKNDVEA- 169
V L LL+ + A
Sbjct: 217 KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAV 276
Query: 170 --------SEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGR 221
+N + N N +L+E + I+ SE L V A N LG+
Sbjct: 277 RGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQ 336
Query: 222 FLLNNDKNIRYVALNTLLRTVYIDTS--AVQRHRNTILECLK-DPDVSIRRRALELSFAL 278
FL + + N+RY+AL ++ + S AV+ H T++ LK + DVS+R+RA++L +A+
Sbjct: 337 FLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAM 396
Query: 279 VNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVL 332
+ +N + ++ E+L +LE ++ + + + AE++A + W++DT+L ++
Sbjct: 397 CDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLI 450
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 270 bits (692), Expect = 9e-84
Identities = 60/356 (16%), Positives = 133/356 (37%), Gaps = 45/356 (12%)
Query: 21 YPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVG 80
+ + + + K++ YL M + D+ ++ NS D +
Sbjct: 45 KDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRA 104
Query: 81 LALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELME--IFLPA 138
LA+ T+G I +++ L + + +K + Y+RK AA+C ++ +++E FL +
Sbjct: 105 LAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDS 164
Query: 139 TRLLLSDKNH-----AIH------------------------------------QVKILK 157
R L++D N A+ Q+ IL
Sbjct: 165 LRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILD 224
Query: 158 LLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVL-AV 216
L D ++++ + + ++ ++ + + L ++ S+ +L +
Sbjct: 225 CLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKL 284
Query: 217 NILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSF 276
LL+ + ++YVAL + V +++ DP ++ L++
Sbjct: 285 APPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPI-YVKLEKLDIMI 343
Query: 277 ALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVL 332
L + AN+ ++ EL + + + DF I CA + + + TLL ++
Sbjct: 344 RLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLI 399
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus}
Length = 355
Score = 174 bits (441), Expect = 8e-50
Identities = 50/306 (16%), Positives = 110/306 (35%), Gaps = 43/306 (14%)
Query: 17 YLPKYPAHFGQLEC-------LKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKN 69
YL H G E KL S+ T +R+ YL + +DV +++T+SL
Sbjct: 53 YLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV-IIVTSSLTK 111
Query: 70 DLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVP 129
D+ G A+ L I M + + +++ + + A + + ++
Sbjct: 112 DMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF 171
Query: 130 ELMEIFLPATRLLLSDKNH--------AIHQVK------------------------ILK 157
++++ ++ + S N ++ V+
Sbjct: 172 DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCM 231
Query: 158 LLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVL-AV 216
++R+ + + + + L + +K+ ++YE +I+++ S + AV
Sbjct: 232 MIRVASRQLEDEDGSRDSPLFDFIESCLRNKH--EMVVYEAASAIVNLPGCSAKELAPAV 289
Query: 217 NILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSF 276
++L F + +RY A+ TL + SAV + + D + SI A+
Sbjct: 290 SVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLL 349
Query: 277 ALVNSA 282
+
Sbjct: 350 KTGSEG 355
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design,
computational design; 1.09A {Mus musculus} PDB: 2a7b_A
1gyv_A 1gyw_A
Length = 122
Score = 111 bits (278), Expect = 3e-29
Identities = 47/111 (42%), Positives = 70/111 (63%), Gaps = 5/111 (4%)
Query: 422 SVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPP 481
S+ AYD G+ I + SVT++T+QA+N ++DF+FQAAVPKTFQLQ+L P
Sbjct: 6 SITAYDALGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSP 65
Query: 482 SDTNIPP--GSQVTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQDQAEI 530
S + +P +TQ ++V N + LRMRIK+++N NG +Q +AE+
Sbjct: 66 SSSVVPAFNTGTITQVIKVL---NPQKQQLRMRIKLTFNWNGYKVQSEAEV 113
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like
fold, adaptin, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 131
Score = 110 bits (277), Expect = 3e-29
Identities = 34/111 (30%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 422 SVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPP 481
+K ++ GV +NL ++ ++T+ ATN + V+ F+ QAAVPK+ QLQ+ P
Sbjct: 15 DLKVFEREGVQLNLSFIRPPENPALLLITITATNFSEGDVTHFICQAAVPKSLQLQLQAP 74
Query: 482 SDTNIPP--GSQVTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQDQAEI 530
S +P G +TQ R+ N +A LR++++++Y+ +Q+ E+
Sbjct: 75 SGNTVPARGGLPITQLFRIL---NPNKAPLRLKLRLTYDHFHQSVQEIFEV 122
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens}
SCOP: b.1.10.2
Length = 146
Score = 110 bits (276), Expect = 7e-29
Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 404 LDTLLKVLVAVSENKDKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSD 463
LD L + S+ AY +G+ I + SVT++T+QA+N ++D
Sbjct: 12 LDGLSSQPLFNDIAAGIPSITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTD 71
Query: 464 FLFQAAVPKTFQLQMLPPSDTNIPP--GSQVTQTLRVAKANNNVQASLRMRIKVSYNVNG 521
F+FQAAVPKTFQLQ+L PS + +P +TQ ++V N + LRMRIK++YN G
Sbjct: 72 FVFQAAVPKTFQLQLLSPSSSIVPAFNTGTITQVIKVL---NPQKQQLRMRIKLTYNHKG 128
Query: 522 TFIQDQAEI 530
+ +QD AE+
Sbjct: 129 SAMQDLAEV 137
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi,
adaptin, endocytosis, adaptor; 1.81A {Mus musculus}
SCOP: b.1.10.2
Length = 140
Score = 110 bits (276), Expect = 7e-29
Identities = 47/111 (42%), Positives = 70/111 (63%), Gaps = 5/111 (4%)
Query: 422 SVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPP 481
S+ AY +G+ I + SVT++T+QA+N ++DF+FQAAVPKTFQLQ+L P
Sbjct: 24 SITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSP 83
Query: 482 SDTNIPP--GSQVTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQDQAEI 530
S + +P +TQ ++V N + LRMRIK++YN G+ +QD AE+
Sbjct: 84 SSSVVPAFNTGTITQVIKVL---NPQKQQLRMRIKLTYNHKGSAMQDLAEV 131
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport;
2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A
2dwy_A 2dwx_A
Length = 153
Score = 104 bits (260), Expect = 1e-26
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 422 SVKAYDNHGVVINLLLDSQTPGD--SVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQML 479
V AYD +G I + P V +V + N V + QAA PK+ ++++
Sbjct: 28 PVTAYDKNGFRILFHFAKECPPGRPDVLVVVVSMLNMAPLPVKSIVLQAAAPKSMKVKLQ 87
Query: 480 PPSDTNIPP------GSQVTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQDQAEI 530
PPS T + P + +TQ + +A N ++ +R+R K+++ + + E+
Sbjct: 88 PPSGTELSPFSPIQPPAAITQVMLLA---NPLKEKVRLRYKLTFALGEQLSTEVGEV 141
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta
sandwich, protein transport; HET: MLY; 1.73A
{Saccharomyces cerevisiae}
Length = 123
Score = 98.9 bits (246), Expect = 6e-25
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 423 VKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPPS 482
+ + I + ++ V + TN + + +S+ +F AVPK+ L + P S
Sbjct: 11 TLVNQSPNLKIEFEISRESNS--VIRIXSFFTNLSSSPISNLVFLLAVPKSMSLXLQPQS 68
Query: 483 DTNIPPGSQ--VTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQDQAE 529
+ ++ ++Q + A N +L ++ KV+Y+VN T ++ A
Sbjct: 69 SNFMIGNAKDGISQEGTIENAPANPSKALXVKWKVNYSVNSTQAEETAV 117
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.7 bits (180), Expect = 8e-14
Identities = 77/493 (15%), Positives = 151/493 (30%), Gaps = 113/493 (22%)
Query: 56 RQDVHLLITNSLKNDLNSSTQFVV--GLALC---TLGAIASPEMSRDLASEVERLM---- 106
R +L + +L + V+ G+ + ++ +V+ M
Sbjct: 133 RLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVAL----DVCLS--YKVQCKMDFKI 184
Query: 107 --------KSSNAYIRKKAALCAYRI----------ILKVPELMEIFLPATRLLLSDKNH 148
S + L Y+I + + R LL K +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 149 AIHQVKILKLLRILGKNDVEASEAMN--DILAQVATNTETSKNVGNTILYETVLSIMDIK 206
L +L +V+ ++A N ++ ++ T K V + + T I
Sbjct: 244 E-------NCLLVL--LNVQNAKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLDH 293
Query: 207 SESGL-RVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDV 265
L ++L ++L +++ L T R + I +++ T + K +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHVNC 352
Query: 266 SIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNI---VLCAERFAPNKR 322
+E S ++ A R M L +F P S++I +L
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVF-----PP-----SAHIPTILLS--LI----- 395
Query: 323 WH-LDTLLKVLVANLLGFSNRALRDQRRA----------LELSFALVNSANVRSMMKELL 371
W + ++V N L +L +++ LEL L N + + +
Sbjct: 396 WFDVIKSDVMVVVNKL--HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 372 IFLEKSEPD-------------FKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVAVSENK 418
+ + D H NI ER + LD + L E K
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH-PERMTLFRMVFLD--FRFL----EQK 506
Query: 419 DKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENL-TLVSDFLFQAAV-----PK 472
+ A++ G ++N L + I E L + DFL +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPY--ICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 473 T--FQLQMLPPSD 483
T ++ ++ +
Sbjct: 565 TDLLRIALMAEDE 577
Score = 61.4 bits (148), Expect = 5e-10
Identities = 71/457 (15%), Positives = 137/457 (29%), Gaps = 140/457 (30%)
Query: 92 PEMSRDL-ASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAI 150
+ +V+ + KS I K I+ + + T L
Sbjct: 27 DAFVDNFDCKDVQDMPKS----ILSKEE---IDHIIMSKDAVS----GTLRLFW------ 69
Query: 151 HQVKILKLLRILGKNDVEASEAMNDILAQ------VATNTETSKNVGNTILYETVLSIM- 203
L + V+ + + ++L TE + T +Y +
Sbjct: 70 -------TLLSKQEEMVQ--KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 204 -DIKSESGL---RVLAVNILGRFLLNNDKNIRYVALN-------TLLRTVYIDTSAVQRH 252
D + + R+ L R L + + V ++ T + A+
Sbjct: 121 NDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWV--------ALDVC 171
Query: 253 RNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHC--SSNI 310
+ ++C D + L+ NS ++++ L L + +P++ + SSNI
Sbjct: 172 LSYKVQCKMDFKI------FWLNLKNCNSP--ETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 311 VLCAE-------RFAPNKRWHLDTLLKVL-------VANLLGFSNRAL---RDQRRALEL 353
L R +K + + LL VL N S + L R ++ L
Sbjct: 224 KLRIHSIQAELRRLLKSKP-YENCLL-VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 354 SFALVNSANVRSM--------MKELLI-FLEKSEPDFKAH-CSSN---IVLCAERFAPNK 400
S A ++ +K LL+ +L+ D ++N + + AE
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 401 -RWHLDTLLKVLVAVSENKDKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLT 459
W D V N DK++ +I L+ P + + + L
Sbjct: 342 ATW--DNWKHV------NCDKLTT--------IIESSLNVLEPAE------YRKMFDRL- 378
Query: 460 LVSDFLFQAAVPKTFQLQMLPPSDTNIPPGSQVTQTL 496
+F P +IP + +
Sbjct: 379 ----SVF--------------PPSAHIPT--ILLSLI 395
Score = 56.0 bits (134), Expect = 2e-08
Identities = 57/379 (15%), Positives = 120/379 (31%), Gaps = 98/379 (25%)
Query: 1 MSSIRQVINDAVERDTYL---PKYP---------------AHFGQLECLKLIASSRF--- 39
S+I+ I+ L Y F L C K++ ++RF
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-LSC-KILLTTRFKQV 277
Query: 40 TDK---------RIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIA 90
TD + + L DE + + L + DL L +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 91 SPEMSR------DLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLS 144
++ ++ +++SS L+ E ++F RL +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNV-------------LEPAEYRKMF---DRLSVF 381
Query: 145 DKNHAIHQVKI-LKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIM 203
+ I LL ++ + ++ S+ M ++ ++ + K E+ +SI
Sbjct: 382 PPS-----AHIPTILLSLIWFDVIK-SDVM-VVVNKLHKYSLVEKQP-----KESTISIP 429
Query: 204 DI-----KSESGLRVLAVNILGRFLL-----NND------------------KNIRYVAL 235
I L +I+ + + ++D KNI +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 236 NTLLRTVYIDTSAVQ---RHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELL 292
TL R V++D ++ RH +T ++++ + N ++ +L
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 293 IFLEKSEPDFKAHCSSNIV 311
FL K E + ++++
Sbjct: 550 DFLPKIEENLICSKYTDLL 568
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 58.9 bits (142), Expect = 7e-10
Identities = 35/205 (17%), Positives = 68/205 (33%), Gaps = 8/205 (3%)
Query: 89 IASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNH 148
+ + + ++ L+ + K A I +L E L LL
Sbjct: 24 LIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEA 83
Query: 149 AIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSE 208
+I K + K E ++M +L + + Y L + +
Sbjct: 84 IPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIG--DEKTKINVSY--ALEEIAKANP 139
Query: 209 SGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIR 268
+ V L + ++ + ALN + V I+ L D D +R
Sbjct: 140 MLMA-SIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVR 198
Query: 269 RRALELSFALVNSANVRSMMKELLI 293
A+E ALV+ A + +++++I
Sbjct: 199 ASAVE---ALVHLATLNDKLRKVVI 220
Score = 42.8 bits (100), Expect = 1e-04
Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 3/122 (2%)
Query: 67 LKNDLNSSTQFVVGLALCTLGAIA--SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRI 124
L + + L IA +P + + + ++ S N + A +
Sbjct: 112 LFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAM 171
Query: 125 ILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNT 184
+ + FLP LL D + + + ++ L L + + + + L ++ +
Sbjct: 172 GENSFKYVNPFLPRIINLLHDGDEIV-RASAVEALVHLATLNDKLRKVVIKRLEELNDTS 230
Query: 185 ET 186
Sbjct: 231 SL 232
Score = 38.9 bits (90), Expect = 0.002
Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 7/188 (3%)
Query: 227 DKNIRY-VALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALEL--SFALVNSAN 283
+ +IR +A L + I + ++E L D ++ + A+ + A
Sbjct: 7 EFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL 66
Query: 284 VRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRA 343
M+K+L L+KSE + I + A K + +++ VL AN +
Sbjct: 67 YEPMLKKLFSLLKKSEAI---PLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKT 123
Query: 344 LRDQRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWH 403
+ ALE A N + S++++ + L + K + I E
Sbjct: 124 KINVSYALE-EIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPF 182
Query: 404 LDTLLKVL 411
L ++ +L
Sbjct: 183 LPRIINLL 190
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 9e-06
Identities = 88/543 (16%), Positives = 156/543 (28%), Gaps = 212/543 (39%)
Query: 22 PAHFGQL-ECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVG 80
P+ GQ + L L + F + YL D+H L L + +++
Sbjct: 74 PSKVGQFDQVLNLCLTE-FENC---YLEG-------NDIHALAA-KLLQENDTTLVKTKE 121
Query: 81 LALCTLGA--IASPEMSRDLASEVERLMKSSNAYIRKKAALCA----------Y----RI 124
L + A +A + S L ++ A L A Y R
Sbjct: 122 LIKNYITARIMAKRPFDKKSNS---ALFRAVGE---GNAQLVAIFGGQGNTDDYFEELRD 175
Query: 125 ILKV--PELMEIFLPATRLL--LSDKNHAI-----HQVKILKLLRILGKNDVEASEAMND 175
+ + + ++ + L L + IL+ L ++ + +
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE--NPSNTPDKDYLLS 233
Query: 176 I--------LAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR---VLAVNILG---- 220
I + Q+A T+K +G T + S +K +G V AV I
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFT--PGELRSY--LKGATGHSQGLVTAVAIAETDSW 289
Query: 221 -RFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILE--CLKD----------PDVSI 267
F ++ K A+ L +I + + NT L L+D P +SI
Sbjct: 290 ESFFVSVRK-----AITVLF---FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 268 R---RRALE---------------LSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSN 309
+ ++ + +LVN A N
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK-------------------------N 376
Query: 310 IVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALR--------DQRRAL----ELSFAL 357
+V+ P +L G N LR DQ R +L F+
Sbjct: 377 LVVSG---PP--------------QSLYGL-NLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 358 VNSANVRSMMKELLIFLEKSEPDFKAHCS----SNIVLCAERFAPNKRWHLDTLLKVLVA 413
FL + P F H ++ ++ + N ++ +
Sbjct: 419 R--------------FLPVASP-F--HSHLLVPASDLINKDLVKNNVSFNAKDI------ 455
Query: 414 VSENKDKVSVKAYDNH-GVVINLLLDSQTPGDSVT------IVTMQ-----ATNENLTLV 461
++ V YD G D + S++ I+ + T T +
Sbjct: 456 ------QIPV--YDTFDGS------DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 462 SDF 464
DF
Sbjct: 502 LDF 504
Score = 42.7 bits (100), Expect = 3e-04
Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 63/199 (31%)
Query: 53 LDERQDVHLLITNSLKNDLNSSTQFVV--------GL--ALCTLGAIASPEMSRDLASEV 102
L + V + SL N + VV GL L A + + SR S
Sbjct: 360 LPAGKQVEI----SLVN---GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS-- 410
Query: 103 ERLMKSSNAYIRKKAALCAYRIILKV--P---ELMEIFLPATRLLLSD--KNHAIHQVKI 155
ER +K SN + L V P L+ PA+ L+ D KN+ K
Sbjct: 411 ERKLKFSNRF-------------LPVASPFHSHLLV---PASDLINKDLVKNNVSFNAKD 454
Query: 156 LKL----------LRILGKNDVEASEAMNDILAQVATNTETSKNVGNT-IL-----YETV 199
+++ LR+L + E + D + ++ ET+ T IL +
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSIS---ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG 511
Query: 200 LSIM--DIKSESGLRVLAV 216
L ++ K +G+RV+
Sbjct: 512 LGVLTHRNKDGTGVRVIVA 530
Score = 35.4 bits (81), Expect = 0.052
Identities = 35/241 (14%), Positives = 67/241 (27%), Gaps = 94/241 (39%)
Query: 332 LVANLLGFSNRALRDQRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVL 391
LV LG+ + + + F V L + L + E + ++I
Sbjct: 60 LVGKFLGYVSSLVEPSKVG---QFDQV-----------LNLCLTEFENCYL--EGNDI-- 101
Query: 392 CAERFAPNKRWHLDTLLKVLVAVSEN---KDKVSVKAYDNHGVVIN---------LLLDS 439
H L L+ ++ K K +K Y ++ L +
Sbjct: 102 -----------H--ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 440 QTPGDSVTIVTM---QATNEN----L--------TLVSDFLFQAAV-------------- 470
G+ +V + Q ++ L LV D + +A
Sbjct: 149 VGEGN-AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 471 --PKTFQL-------QMLPPSD--TNIP---PGSQVTQ------TLRVAKAN-NNVQASL 509
+ + P D +IP P V Q T ++ +++ L
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 510 R 510
+
Sbjct: 268 K 268
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 45.6 bits (108), Expect = 2e-05
Identities = 31/225 (13%), Positives = 67/225 (29%), Gaps = 20/225 (8%)
Query: 49 AMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKS 108
A L + L L+ + L + R
Sbjct: 10 ASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAI----EFCSD 65
Query: 109 SNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVE 168
N R A +I + +F + L+DK+ + ++ K +
Sbjct: 66 KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRAT-AIESTAQRCKKNPI 124
Query: 169 ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDK 228
S + + A + T+ + T +I I ++ + +L L + +
Sbjct: 125 YSPKIVEQSQITAFDKSTN------VRRATAFAISVINDKA-----TIPLLINLLKDPNG 173
Query: 229 NIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALE 273
++R A + Y ++ +E L+D + +R A+
Sbjct: 174 DVRNWAAFAININKYDNSDIRD----CFVEMLQDKNEEVRIEAII 214
Score = 31.3 bits (71), Expect = 0.69
Identities = 23/166 (13%), Positives = 51/166 (30%), Gaps = 18/166 (10%)
Query: 109 SNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVE 168
SN Y ++KA+ + + ++ LL D N ++ ++L++ G
Sbjct: 2 SNTYQKRKAS----KEYGLYNQCKKLNDDELFRLLDDHNSLK-RISSARVLQLRG----- 51
Query: 169 ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNN-D 227
+ + + ++ + IK NIL LN+
Sbjct: 52 -GQDAVRLAIEFCSDKNYI------RRDIGAFILGQIKICKKCEDNVFNILNNMALNDKS 104
Query: 228 KNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALE 273
+R A+ + + + + D ++RR
Sbjct: 105 ACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAF 150
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 38.5 bits (88), Expect = 0.007
Identities = 42/258 (16%), Positives = 90/258 (34%), Gaps = 16/258 (6%)
Query: 42 KRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASE 101
K + L + V I + + S + + L+L +G +L S
Sbjct: 801 KCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSV 860
Query: 102 VERLMKSSNAYIRKKAALCAYRIILK-VPELMEIFLPATRLLLSDKNHAIHQVKILKLLR 160
+ S + ++ A+ I + +PE + L + +H +K +
Sbjct: 861 ILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSA 920
Query: 161 ILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILG 220
+ +L E ++NV L L+++D ++ + L
Sbjct: 921 SVVGLKPYVENIWALLLKHCECAEEGTRNVVAECL--GKLTLIDPETL-------LPRLK 971
Query: 221 RFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHR----NTILECLKDPDVSIRRRALE--L 274
+L++ R + + T+ + L+ L+DPD+++RR AL
Sbjct: 972 GYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFN 1031
Query: 275 SFALVNSANVRSMMKELL 292
S A + +R ++ +L
Sbjct: 1032 SAAHNKPSLIRDLLDTVL 1049
Score = 37.4 bits (85), Expect = 0.013
Identities = 30/228 (13%), Positives = 74/228 (32%), Gaps = 21/228 (9%)
Query: 215 AVNILGRFLLNNDKNIRYVALNTLLR-----TVYIDTSAVQRHRNTILECLKDPDVSIRR 269
++ L + ++DK+ R++A N L+ ++ +D + ++ IL+ L+D + ++
Sbjct: 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN 66
Query: 270 RALELSFALVN---SANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWH-- 324
A++ LV+ V +++ L + + + S + P
Sbjct: 67 LAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL 126
Query: 325 LDTLLKVLVANLLGFSNRALRDQRRALELS--------FALVNSANVRSMMKELLIFLEK 376
+ K + L + + L + S++ LL L
Sbjct: 127 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 186
Query: 377 SEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVAVSENKDKVSVK 424
+ + L++ L++ D +S
Sbjct: 187 PRLAVRKRTIIALGHLVMSCGNI---VFVDLIEHLLSELSKNDSMSTT 231
Score = 31.6 bits (70), Expect = 0.73
Identities = 23/185 (12%), Positives = 57/185 (30%), Gaps = 14/185 (7%)
Query: 247 SAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVR---SMMKELLIFLEKSEPDFK 303
++ H + +LE + D R A + +++ ++++ + K D
Sbjct: 2 ASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN 61
Query: 304 AHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALRD------QRRALELSFAL 357
+ V C + + + + + LRD + EL A
Sbjct: 62 GEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS 121
Query: 358 VNSANVRSMMKELLIFL-----EKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLV 412
SA ++ K++ L ++ + + + R ++L L+
Sbjct: 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLL 181
Query: 413 AVSEN 417
+
Sbjct: 182 PQLTS 186
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 37.7 bits (87), Expect = 0.008
Identities = 43/328 (13%), Positives = 101/328 (30%), Gaps = 21/328 (6%)
Query: 105 LMKSSNAYIRKKAA--LCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRIL 162
+++ + +R + L + L V LP + D++ + + + L
Sbjct: 18 ELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEV--LLALAEQLGTF 75
Query: 163 GKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRF 222
V E ++ +L + + + V E++ +I S S L V ++ R
Sbjct: 76 TTL-VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRL 134
Query: 223 LLNNDKNIRYVALNTLLRTVYIDTSAVQRH-RNTILECLKDPDVSIRRRALELSFALVNS 281
+ R A +SAV+ R D +RR A
Sbjct: 135 AGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKV 194
Query: 282 ANVRSMMKELLIFLEK----SEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLL 337
+ ++ E++ + + V A+ L ++ L
Sbjct: 195 LELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL--VMPTLRQAA- 251
Query: 338 GFSNRALRDQRRALELSFALVNSANVRSMMKELLIFLEK----SEPDFKAHCSSNIVLCA 393
+++ R + + L + +L+ + E + +A S +
Sbjct: 252 --EDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC 309
Query: 394 ERFAPNKRW--HLDTLLKVLVAVSENKD 419
E + + R + +L + + + +
Sbjct: 310 ENLSADCRENVIMSQILPCIKELVSDAN 337
Score = 36.5 bits (84), Expect = 0.022
Identities = 36/264 (13%), Positives = 83/264 (31%), Gaps = 13/264 (4%)
Query: 44 IGYLGAMLLLDERQDVHL-LITNSLKNDLNSSTQFVVGLALCTLGAIAS----PEMSRDL 98
+ L D R++V + I +K ++ + Q V + ++ L
Sbjct: 305 VKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL 364
Query: 99 ASEVERLMKSSNAYIRKKAALCAYRII--LKVPELMEIFLPATRLLLSDKNHAIHQVKIL 156
+K +R + + + +L + LPA L D + I
Sbjct: 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE 424
Query: 157 KLLRILGKNDVEA-SEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLA 215
+ + G+ VE E +N + + + T + +++ +
Sbjct: 425 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAAT---SNLKKLVEKFGKEWAHATI 481
Query: 216 VNILGRFLLNNDKNIRYVALNTLLR-TVYIDTSAVQRH-RNTILECLKDPDVSIRRRALE 273
+ + + + R L + + +H T+L DP ++R +
Sbjct: 482 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAK 541
Query: 274 LSFALVNSANVRSMMKELLIFLEK 297
+ + ++ E+ LEK
Sbjct: 542 SLQKIGPILDNSTLQSEVKPILEK 565
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 36.7 bits (84), Expect = 0.019
Identities = 36/242 (14%), Positives = 81/242 (33%), Gaps = 21/242 (8%)
Query: 202 IMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLK 261
++D ++ R+LA L L++ D + + A + + L L
Sbjct: 48 LIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQ--VSPEAKNQIKTNALTALV 105
Query: 262 DPDVSIRRRALELSFALVNSANVRSMMKELLIFL---EKSEPDFKAHCSSNIVL--CAER 316
+ I A +L A+ + EL+ + +E +S + L E
Sbjct: 106 SIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCES 165
Query: 317 FAPNKRWHLDTLLKVLVANLLGFSNRALRDQRRALELSFALVNS-----------ANVRS 365
P + + + +L+A + G + R L+ AL +S
Sbjct: 166 ADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALN-ALADSLIFIKNNMEREGERNY 224
Query: 366 MMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVL--VAVSENKDKVSV 423
+M+ + + + + +A + ++ + +++ L L + DKV+
Sbjct: 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVAS 284
Query: 424 KA 425
Sbjct: 285 MT 286
Score = 34.0 bits (77), Expect = 0.13
Identities = 41/261 (15%), Positives = 76/261 (29%), Gaps = 20/261 (7%)
Query: 67 LKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIIL 126
LKN+L S SPE + + + S I AA I
Sbjct: 65 LKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIAD 124
Query: 127 KVPELMEIFLPATRLLLSDKNHAIHQVK------ILKLLRILGKNDVEASEAMNDILAQV 180
++ + VK + + + N+IL +
Sbjct: 125 IELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAI 184
Query: 181 ---ATNTETSKNV---GNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVA 234
A +TETSK V L ++++ I + G R + ++ D ++ A
Sbjct: 185 VQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAA 244
Query: 235 LNTLLRTVYIDTSAVQRHRNTILECL-----KDPDVSIRRRALELSFALVNSANVRSMMK 289
L + + + ++ + L L K P+ + +E +
Sbjct: 245 FGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEF---WSTICEEEIDIA 301
Query: 290 ELLIFLEKSEPDFKAHCSSNI 310
L +S S+I
Sbjct: 302 YELAQFPQSPLQSYNFALSSI 322
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 33.3 bits (76), Expect = 0.24
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 32/99 (32%)
Query: 33 LIASSRFTDKRIGYL----------GAMLLL-----DERQDVHLLITNSLKNDLNSSTQF 77
++ +SRF+ + Y G+ L++ +QDV LI + T+
Sbjct: 505 VVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALI------EFIYDTEK 558
Query: 78 VVGLALCTLGAI----ASPEMSRDLA-----SEVE-RLM 106
GL L AI A PE +L SE R+M
Sbjct: 559 NGGLGW-DLDAIIPFAAIPEQGIELEHIDSKSEFAHRIM 596
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 32.0 bits (73), Expect = 0.38
Identities = 43/227 (18%), Positives = 76/227 (33%), Gaps = 43/227 (18%)
Query: 49 AMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKS 108
A L + + V + I +L + +V A LG I L + +K
Sbjct: 11 AAPLRADPEKVEMYI-----KNLQDDSYYVRRAAAYALGKIGDERAVEPLI----KALKD 61
Query: 109 SNAYIRKKA--ALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKND 166
+A++R+ A AL V L++ L D++ + + L +G D
Sbjct: 62 EDAWVRRAAADALGQIGDERAVEPLIK--------ALKDEDGWV-RQSAAVALGQIG--D 110
Query: 167 VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNN 226
A E + L + V ++ +I E AV L + L +
Sbjct: 111 ERAVEPLIKAL------KDEDWFV----RIAAAFALGEIGDER-----AVEPLIKALKDE 155
Query: 227 DKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALE 273
D +R A + L I V R + + + R+ A+
Sbjct: 156 DGWVRQSAADALGE---IGGERV---RAAMEKLAETGTGFARKVAVN 196
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 31.5 bits (72), Expect = 0.43
Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 38/209 (18%)
Query: 67 LKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKA--ALCAYRI 124
+L + +V A LG I L + +K +A++R+ A AL
Sbjct: 19 YIKNLQDDSYYVRRAAAYALGKIGDERAVEPLI----KALKDEDAWVRRAAADALGQIGD 74
Query: 125 ILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNT 184
V L++ L D++ + + L +G D A E + L
Sbjct: 75 ERAVEPLIK--------ALKDEDGWV-RQSAAVALGQIG--DERAVEPLIKAL------K 117
Query: 185 ETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYI 244
+ V ++ +I E AV L + L + D +R A + L I
Sbjct: 118 DEDWFV----RIAAAFALGEIGDER-----AVEPLIKALKDEDGWVRQSAADALGE---I 165
Query: 245 DTSAVQRHRNTILECLKDPDVSIRRRALE 273
V R + + + R+ A+
Sbjct: 166 GGERV---RAAMEKLAETGTGFARKVAVN 191
Score = 28.0 bits (63), Expect = 5.1
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 215 AVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALE 273
V + + L ++ +R A L + D AV+ +++ LKD D +RR A +
Sbjct: 15 KVEMYIKNLQDDSYYVRRAAAYALGKIG--DERAVE----PLIKALKDEDAWVRRAAAD 67
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc
complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Length = 800
Score = 31.8 bits (71), Expect = 0.75
Identities = 31/231 (13%), Positives = 68/231 (29%), Gaps = 14/231 (6%)
Query: 85 TLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLS 144
L I D+ ++ + S + ++ + L A + + E + LLS
Sbjct: 251 LLSRIYPLIGPNDIIEQLVGFLDSGDWQVQF-SGLIALGYLKEFVEDKDGLCRKLVSLLS 309
Query: 145 DKNHAIHQV--KILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSI 202
+ I + ++L I D+ + +I ++ + + N+ + I
Sbjct: 310 SPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELISVSKTSNLS------LLTKI 363
Query: 203 MDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKD 262
E + + + + +R LN + L +
Sbjct: 364 YRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEESID-----FLVAEVVLIE 418
Query: 263 PDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLC 313
IR A++L + + +I EP + S L
Sbjct: 419 EKDEIREMAIKLLKKRRDLPKNLILHFMNVIGGSLYEPYSEDDFVSYEDLY 469
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 28.8 bits (65), Expect = 2.0
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 21/80 (26%)
Query: 207 SESGLRVLAVNILGRF-----------LLNNDKNIRYVALNTL--LRTVYIDTSAVQRHR 253
+R L R L N D IR A + + D AV+
Sbjct: 24 ENKWVRRDVSTALSRMGDEAFEPLLESLSNEDWRIRGAAAWIIGNFQ----DERAVE--- 76
Query: 254 NTILECLKDPDVSIRRRALE 273
+++ L+D +R A
Sbjct: 77 -PLIKLLEDDSGFVRSGAAR 95
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 29.6 bits (66), Expect = 2.2
Identities = 22/193 (11%), Positives = 67/193 (34%), Gaps = 15/193 (7%)
Query: 93 EMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELM-----EIFLPATRLLLSDKN 147
++ + + ++ +RK++ +++ P+L + +++ D N
Sbjct: 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN 70
Query: 148 HAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKS 207
+ + L + S + + + + K T L E + +I S
Sbjct: 71 VVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS 130
Query: 208 ESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTV------YIDTSAVQRHRNTILECLK 261
+ L N + +++ + R + ++ ++ ++++ L
Sbjct: 131 LEAQ----QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN 186
Query: 262 DPDVSIRRRALEL 274
+PD ++R + E
Sbjct: 187 EPDPTVRDSSAEA 199
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule,
XMAP215, STU2, DIS1, microtubule associated protein,
structural protein; 1.90A {Caenorhabditis elegans}
Length = 266
Score = 29.4 bits (65), Expect = 2.8
Identities = 14/116 (12%), Positives = 36/116 (31%), Gaps = 2/116 (1%)
Query: 255 TILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCA 314
+L + ++R ++ L + M LL L+ ++ C I
Sbjct: 136 YLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYI 195
Query: 315 ERFAPNKRWHLDTLLKVLVANLLGFSNRALRDQRRALELSFALVNSANVRSMMKEL 370
+ ++ K VA +G + +R+ + ++ + +
Sbjct: 196 TNAGISPL-KSLSVEKT-VAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRM 249
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 29.0 bits (64), Expect = 4.7
Identities = 39/234 (16%), Positives = 74/234 (31%), Gaps = 31/234 (13%)
Query: 44 IGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLA---- 99
I +L +L D + L + + + LAL L + + +
Sbjct: 547 IPFLFELLPRSTPVDDNPLHNDEQIKLTD---NYEALLALTNLASSETSDGEEVCKHIVS 603
Query: 100 -----SEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVK 154
S +E LM N +++ ++ + F + ++
Sbjct: 604 TKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFN------LENPQSLRNFN 657
Query: 155 ILKLLRILGKNDVEASEAMNDILAQVATNTETSKN--VGNTILYETVLSIM-DIKSESGL 211
IL L L +DVE+ A+ I A +AT + L E + + D + L
Sbjct: 658 ILVKL--LQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIEL 715
Query: 212 RVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDV 265
R + + + V + VY Q+ ++ + LK D
Sbjct: 716 RQRLLMLF--------FGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDS 761
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva,
oxygen storage/transport complex; HET: HEM; 1.50A
{Tokunagayusurika akamusi}
Length = 150
Score = 28.0 bits (62), Expect = 5.1
Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 7/96 (7%)
Query: 92 PEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRL----LLSDKN 147
P D+ + L+KSS A I K Y P F L
Sbjct: 2 PTW-VDMEAGDIALVKSSWAQIHDKEVDILYNFFKSYPASQAKFSAFAGKDLESLKDTAP 60
Query: 148 HAIHQVKILKLLR--ILGKNDVEASEAMNDILAQVA 181
A+H +I+ ++ I E A+ ++L Q
Sbjct: 61 FALHATRIVSVINEAIALMGVAENRPALKNVLKQQG 96
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 28.7 bits (64), Expect = 5.5
Identities = 29/213 (13%), Positives = 69/213 (32%), Gaps = 27/213 (12%)
Query: 71 LNSSTQFVVGLALCTLGAIA--SPEMSRDLASE-----VERLMKSSNAYIRKKAALCAYR 123
L + VV AL +G I ++ + + + L+ S I+K+A
Sbjct: 243 LMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302
Query: 124 IILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVAT- 182
I ++ + + I L+ IL + + + +
Sbjct: 303 ITAGNRAQIQTVI----------DANI----FPALISILQTAEFRTRKEAAWAITNATSG 348
Query: 183 -NTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRT 241
+ E K + + + ++ + +S + +A+N L L ++ +
Sbjct: 349 GSAEQIKYLVELGCIKPLCDLLTV-MDSKIVQVALNGLENILRLGEQEAKRNGTGINPYC 407
Query: 242 VYIDTSAVQRHRNTILECLKDPDVSIRRRALEL 274
I+ + + I + I ++A +L
Sbjct: 408 ALIEEAYG---LDKIEFLQSHENQEIYQKAFDL 437
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 27.9 bits (63), Expect = 7.5
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 201 SIMDIKSESGLRVLAVNILGRFLL 224
I D+ SE + AVN+ F +
Sbjct: 144 EIKDLTSEQFQQTFAVNVFALFWI 167
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.369
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,537,643
Number of extensions: 447636
Number of successful extensions: 1116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1053
Number of HSP's successfully gapped: 66
Length of query: 530
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 432
Effective length of database: 3,965,535
Effective search space: 1713111120
Effective search space used: 1713111120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.5 bits)