RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4020
(530 letters)
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 202 bits (514), Expect = 2e-58
Identities = 82/429 (19%), Positives = 187/429 (43%), Gaps = 33/429 (7%)
Query: 1 MSSIRQVINDAVERDTYLPK-------------YPAHFGQLECLKLIASSRFTDKRIGYL 47
+++IR D Y K + FG +E + L++S+R+T+K+IGYL
Sbjct: 29 LANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYL 88
Query: 48 GAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMK 107
+L++ ++ LI N++KNDL S +GLAL + + S EM+ A E+ +++
Sbjct: 89 FISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILV 148
Query: 108 --SSNAYIRKKAALCAYRIILKVPELMEI--FLPATRLLLSDKNHAIHQVKILKLLRILG 163
+ +++ AALC R+ P+L+ + + LL+D++ + + +
Sbjct: 149 AGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 208
Query: 164 KNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFL 223
KN E +++ +++++ ++ Y V + L V + +L +
Sbjct: 209 KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPW-------LSVKLLRLLQCYP 261
Query: 224 LNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFAL-VNSA 282
D +R L + + Q + + ++ A+ L
Sbjct: 262 PPEDPAVR----GRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPN 317
Query: 283 NVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNR 342
+ +L FL+ E + + ++ A + T ++ ++ L +
Sbjct: 318 LLVRACNQLGQFLQHRETNLRYLALESMCTLASS--EFSHEAVKTHIETVINALKTERDV 375
Query: 343 ALRDQRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRW 402
++ ++RA++L +A+ + +N + ++ E+L +LE ++ + + + AE++A + W
Sbjct: 376 SV--RQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTW 433
Query: 403 HLDTLLKVL 411
++DT+L ++
Sbjct: 434 YVDTILNLI 442
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 200 bits (509), Expect = 7e-58
Identities = 57/356 (16%), Positives = 129/356 (36%), Gaps = 45/356 (12%)
Query: 21 YPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVG 80
+ + + + K++ YL M + D+ ++ NS D +
Sbjct: 42 KDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRA 101
Query: 81 LALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATR 140
LA+ T+G I +++ L + + +K + Y+RK AA+C ++ +++E
Sbjct: 102 LAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDS 161
Query: 141 L--LLSDKNHAIH-----------------------------------------QVKILK 157
L L++D N + Q+ IL
Sbjct: 162 LRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILD 221
Query: 158 LLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVL-AV 216
L D ++++ + + ++ ++ + + L ++ S+ +L +
Sbjct: 222 CLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKL 281
Query: 217 NILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSF 276
LL+ + ++YVAL + V +++ DP ++ L++
Sbjct: 282 APPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPI-YVKLEKLDIMI 340
Query: 277 ALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVL 332
L + AN+ ++ EL + + + DF I CA + + + TLL ++
Sbjct: 341 RLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLI 396
Score = 30.1 bits (67), Expect = 0.77
Identities = 25/174 (14%), Positives = 60/174 (34%), Gaps = 3/174 (1%)
Query: 17 YLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQ 76
+ K P Q + + + ++ L M+ L + ++ ++ LK
Sbjct: 306 IVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVL-AELKEYATEVDV 364
Query: 77 FVVGLALCTLG--AIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEI 134
V A+ +G AI + + S + L+++ Y+ ++A + I K P E
Sbjct: 365 DFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYES 424
Query: 135 FLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSK 188
+ L + + ++ ++ + A E + L + +
Sbjct: 425 IIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQ 478
>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 120
Score = 114 bits (287), Expect = 5e-31
Identities = 47/111 (42%), Positives = 69/111 (62%), Gaps = 5/111 (4%)
Query: 422 SVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPP 481
S+ AY +G+ I + SVT++T+QA+N ++DF+FQAAVPKTFQLQ L P
Sbjct: 4 SITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQELSP 63
Query: 482 SDTNIPP--GSQVTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQDQAEI 530
S + +P +TQ ++V N + LRMRIK++YN G+ +QD AE+
Sbjct: 64 SSSVVPAFNTGTITQVIKVL---NPQKQQLRMRIKLTYNHKGSAMQDLAEV 111
>d2dwya1 b.1.10.2 (A:511-639) ADP-ribosylation factor binding
protein Gga1 domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 129
Score = 105 bits (264), Expect = 1e-27
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 423 VKAYDNHGVVINLLL--DSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLP 480
V YD HG I D V +V + + + + +FQ+AVPK ++++ P
Sbjct: 5 VTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQP 64
Query: 481 PSDTNIPP------GSQVTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQDQAEI 530
PS T +P S +TQ L +A N + +R+R K+++ + + ++
Sbjct: 65 PSGTELPAFNPIVHPSAITQVLLLA---NPQKEKVRLRYKLTFTMGDQTYNEMGDV 117
>d1p4ua_ b.1.10.2 (A:) ADP-ribosylation factor binding protein Gga3
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 104 bits (260), Expect = 4e-27
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 422 SVKAYDNHGVVINLLLDSQTPGD--SVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQML 479
V AYD +G I + P V +V + N V + QAA PK+ ++++
Sbjct: 20 PVTAYDKNGFRILFHFAKECPPGRPDVLVVVVSMLNMAPLPVKSIVLQAAAPKSMKVKLQ 79
Query: 480 PPSDTNIPP------GSQVTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQDQAEI 530
PPS T + P + +TQ + +A N ++ +R+R K+++ + + E+
Sbjct: 80 PPSGTELSPFSPIQPPAAITQVMLLA---NPLKEKVRLRYKLTFALGEQLSTEVGEV 133
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein
1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 38.2 bits (87), Expect = 0.003
Identities = 31/229 (13%), Positives = 79/229 (34%), Gaps = 21/229 (9%)
Query: 214 LAVNILGRFLLNNDKNIRYVALNTLLR-----TVYIDTSAVQRHRNTILECLKDPDVSIR 268
++ L + ++DK+ R++A N L+ ++ +D + ++ IL+ L+D + ++
Sbjct: 3 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQ 62
Query: 269 RRALELSFALVN---SANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWH- 324
A++ LV+ V +++ L + + + S + P
Sbjct: 63 NLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 122
Query: 325 -LDTLLKVLVANLLGFSNRALRDQRR--ALELSFALVNSA------NVRSMMKELLIFLE 375
+ K + L + + AL++ +++ S++ LL L
Sbjct: 123 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT 182
Query: 376 KSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVAVSENKDKVSVK 424
+ + L++ L++ D +S
Sbjct: 183 SPRLAVRKRTIIALGHLVMSCGNI---VFVDLIEHLLSELSKNDSMSTT 228
Score = 37.8 bits (86), Expect = 0.003
Identities = 37/227 (16%), Positives = 83/227 (36%), Gaps = 16/227 (7%)
Query: 62 LITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCA 121
I + + S + + L+L +G +L S + S + ++ A+
Sbjct: 818 FIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYAL 877
Query: 122 YRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLR--ILGKNDVEASEAMNDILAQ 179
I + +LP +L + Q +L L+ I + V + +I A
Sbjct: 878 GSISVGNLPE---YLPF--VLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWAL 932
Query: 180 VATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLL 239
+ + E ++ ++ E + + I E+ + L +L++ R + +
Sbjct: 933 LLKHCECAEEGTRNVVAECLGKLTLIDPET-----LLPRLKGYLISGSSYARSSVVTAVK 987
Query: 240 RTVYIDTSAVQRHR----NTILECLKDPDVSIRRRALELSFALVNSA 282
T+ + L+ L+DPD+++RR AL + ++
Sbjct: 988 FTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK 1034
Score = 37.0 bits (84), Expect = 0.007
Identities = 38/299 (12%), Positives = 97/299 (32%), Gaps = 41/299 (13%)
Query: 52 LLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNA 111
+ +D + TN L +L + + R + + +L++ N
Sbjct: 12 MTSSDKDFRFMATNDLMTELQKDS------------IKLDDDSERKVVKMILKLLEDKNG 59
Query: 112 YIRKKAALCAYRIILKVPE-LMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEAS 170
++ A C ++ KV E +E + + + + + L ++
Sbjct: 60 EVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVI-------- 111
Query: 171 EAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNI 230
L ++ + + NV I + S + + + +++ A++I+ L +
Sbjct: 112 ----GELPPASSGSALAANVCKKIT-GRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLL 166
Query: 231 RYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKE 290
+ L +L L P +++R+R + LV S +
Sbjct: 167 VNFHPSIL---------------TCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 211
Query: 291 LLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALRDQRR 349
+ L + + + + C + + L+ ++ ++ F N + R
Sbjct: 212 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELRE 270
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 861
Score = 33.6 bits (75), Expect = 0.070
Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 7/145 (4%)
Query: 202 IMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLK 261
++D ++ R+LA L L++ D + + A + + L L
Sbjct: 48 LIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQ--VSPEAKNQIKTNALTALV 105
Query: 262 DPDVSIRRRALELSFALVNSANVRSMMKELLIFLE---KSEPDFKAHCSSNIVL--CAER 316
+ I A +L A+ + EL+ + +E +S + L E
Sbjct: 106 SIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCES 165
Query: 317 FAPNKRWHLDTLLKVLVANLLGFSN 341
P + + + +L+A + G +
Sbjct: 166 ADPQSQALVSSSNNILIAIVQGAQS 190
Score = 32.5 bits (72), Expect = 0.15
Identities = 42/281 (14%), Positives = 87/281 (30%), Gaps = 24/281 (8%)
Query: 67 LKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIIL 126
LKN+L S SPE + + + S I AA I
Sbjct: 65 LKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIAD 124
Query: 127 ------KVPELMEIFLPATRLLLSDKNHAIHQV------KILKLLRILGKNDVEASEAMN 174
PELM+I + +++ + + + + + V +S +
Sbjct: 125 IELPHGAWPELMKIMV---DNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNIL 181
Query: 175 DILAQVATNTETSKNV---GNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIR 231
+ Q A +TETSK V L ++++ I + G R + ++ D ++
Sbjct: 182 IAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQ 241
Query: 232 YVALNTLLRTVYIDTSAVQRHRNTILECL-----KDPDVSIRRRALELSFALVNSA-NVR 285
A L + + + ++ + L L K P+ + +E + ++
Sbjct: 242 AAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIA 301
Query: 286 SMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLD 326
+ + +S + + D
Sbjct: 302 YELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPED 342
>d1kyfa1 b.1.10.1 (A:692-824) Alpha-adaptin AP2 ear domain,
N-terminal subdomain {Mouse (Mus musculus) [TaxId:
10090]}
Length = 133
Score = 30.2 bits (68), Expect = 0.22
Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 432 VINLLLDSQTPGDSVTIVTMQATNENLTLVSDF--LFQAAVPKTFQLQMLP-PSDTNIPP 488
++ + L S+ + + + N+ T +F A L + P D +
Sbjct: 30 LLQIGLKSEFRQNLGRM-FIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDG 88
Query: 489 GSQVTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQ 525
G+QV Q + + ++ +A + + + + GTF
Sbjct: 89 GAQVQQVVNIECISDFTEAPV---LNIQFRYGGTFQN 122
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
[TaxId: 562]}
Length = 276
Score = 30.2 bits (66), Expect = 0.62
Identities = 13/123 (10%), Positives = 35/123 (28%), Gaps = 8/123 (6%)
Query: 214 LAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALE 273
L + L R L +++ R + L AV+ +E D + R
Sbjct: 19 LNDDELFRLLDDHNSLKRISSARVLQL--RGGQDAVR----LAIEFCSDKNYIRRDIGAF 72
Query: 274 LSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLV 333
+ + + +L + ++ A + + + + +++
Sbjct: 73 ILGQIKICKKCEDNVFNILNNMALNDKS--ACVRATAIESTAQRCKKNPIYSPKIVEQSQ 130
Query: 334 ANL 336
Sbjct: 131 ITA 133
>d1sddb2 b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (Bos
taurus) [TaxId: 9913]}
Length = 139
Score = 29.0 bits (64), Expect = 0.74
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 8/105 (7%)
Query: 396 FAPNKRWHLDTLLKVLVAVSENKDKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATN 455
F K W+ D + ++ K S + + +G++ NL + V + +
Sbjct: 12 FDEKKSWYYDKKPTRSWRRASSEVKNSHEFHAINGMIYNLPGLRMYEQEWVRLHLLNLGG 71
Query: 456 ENLTLVSDFLFQAAVPKTFQLQMLPPS--DT-NIPPGSQVTQTLR 497
V F Q T + PGS T ++
Sbjct: 72 SRDIHVVHFHGQ-----TLLENGTQQHQLGVWPLLPGSFKTLEMK 111
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis
[TaxId: 632]}
Length = 141
Score = 28.8 bits (64), Expect = 0.83
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 474 FQLQMLPPSDTNIPP--GSQVTQTLRVAKANNNVQASLRMRIKVSY 517
++ +PP D +I + + VQ ++ IK+
Sbjct: 91 LCVKGIPPKDEDIWVDDATNKQKFNPDKDVGVFVQFAINNCIKLLV 136
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 29.1 bits (63), Expect = 1.4
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 91 SPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEI-----FLPATRLLLSD 145
E++ E+ +L+ + + KAA+ +++ K I + A + +
Sbjct: 11 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70
Query: 146 KNHAIHQVKILKLLRILGKND 166
N L L +
Sbjct: 71 TNDVETARCTAGTLHNLSHHR 91
Score = 26.4 bits (56), Expect = 9.8
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 71 LNSSTQFVVGLALCTLGAIASPEMSRDLASE------VERLMKSSNAYIRKKAALCAYRI 124
L S + + +A L +A + + + + L+ S N + AA +R+
Sbjct: 469 LYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex
lectularius) [TaxId: 79782]}
Length = 280
Score = 28.8 bits (63), Expect = 1.6
Identities = 6/45 (13%), Positives = 11/45 (24%)
Query: 279 VNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRW 323
+ ++ELL PD A ++
Sbjct: 14 SGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPAC 58
Score = 28.8 bits (63), Expect = 1.6
Identities = 6/45 (13%), Positives = 11/45 (24%)
Query: 358 VNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRW 402
+ ++ELL PD A ++
Sbjct: 14 SGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPAC 58
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 29.0 bits (63), Expect = 1.6
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 2/68 (2%)
Query: 86 LGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVP--ELMEIFLPATRLLL 143
+ PE L +E L +R KA I + +L F+P + L
Sbjct: 76 TTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLA 135
Query: 144 SDKNHAIH 151
Sbjct: 136 GGDWFTSR 143
>d1y6ha_ d.167.1.1 (A:) Peptide deformylase {Leptospira interrogans
[TaxId: 173]}
Length = 177
Score = 27.8 bits (61), Expect = 2.3
Identities = 3/63 (4%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 255 TILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCA 314
++ + L+ D +R+ + ++ + + + +++++ + ++ +
Sbjct: 1 SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDM---FDTMRHAEGVGLAAPQIGIL 57
Query: 315 ERF 317
++
Sbjct: 58 KQI 60
>d1c41a_ c.16.1.1 (A:) Lumazine synthase {Rice blast fungus
(Magnaporthe grisea) [TaxId: 148305]}
Length = 195
Score = 27.8 bits (61), Expect = 2.7
Identities = 11/78 (14%), Positives = 27/78 (34%)
Query: 102 VERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRI 161
+E L+ + A + + ++ VP E+ + RL + + L +
Sbjct: 26 IEPLLAGTKAKLLACGVKESNIVVQSVPGSWELPIAVQRLYSASQLQTPSSGPSLSAGDL 85
Query: 162 LGKNDVEASEAMNDILAQ 179
LG + + + +
Sbjct: 86 LGSSTTDLTALPTTTASS 103
>d1m98a2 d.17.4.6 (A:176-317) Orange carotenoid protein, C-terminal
domain {Cyanobacteria (Arthrospira maxima) [TaxId:
129910]}
Length = 142
Score = 27.1 bits (60), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 212 RVLAVNILGRFLLNNDKNIRYVALNTL 238
+ +NI RFLLN + + +VA++ L
Sbjct: 107 GNVGMNIAWRFLLNPENKVFFVAIDLL 133
>d2dexx2 b.6.1.6 (X:4-112) Peptidylarginine deiminase Pad4,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 25.9 bits (57), Expect = 5.2
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 16/74 (21%)
Query: 369 ELLIFLEKSEPD----FKAHCSSNIVLCAERFAPNK-------RWHLDTLLKVLVAVS-- 415
+ + S P+ F + S +V+ P K W LD ++V + +
Sbjct: 21 LTQLDICSSAPEDCTSFSINASPGVVVDIAHSPPAKKKSTGSSTWPLDPGVEVTLTMKAA 80
Query: 416 ---ENKDKVSVKAY 426
KV + Y
Sbjct: 81 SGSTGDQKVQISYY 94
>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 116
Score = 26.2 bits (57), Expect = 5.9
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 3/73 (4%)
Query: 231 RY---VALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSM 287
RY L L+ + + + + + RR L +
Sbjct: 41 RYAEFDKLYNSLKKQFPAMALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELYN 100
Query: 288 MKELLIFLEKSEP 300
++ FL+ P
Sbjct: 101 HPDVRAFLQMDSP 113
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella
typhimurium [TaxId: 90371]}
Length = 128
Score = 26.0 bits (57), Expect = 6.3
Identities = 6/32 (18%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 486 IPPGSQVTQTLRVAKANNNVQASLRMRIKVSY 517
+PP ++ + T + A ++ S+ K+ +
Sbjct: 93 VPPENEPSDT-QAKGATLDLNLSINACDKLIF 123
>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 91
Score = 25.2 bits (55), Expect = 7.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 142 LLSDKNHAIHQVKILKLLRILGKNDVEASEAMND 175
++SD N A + K+ +L+ I GKN E A++D
Sbjct: 23 MISDHNDADFEEKVKQLIDITGKNQDECVIALHD 56
>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 260
Score = 26.6 bits (58), Expect = 7.6
Identities = 10/106 (9%), Positives = 31/106 (29%), Gaps = 6/106 (5%)
Query: 285 RSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRAL 344
+S+ E+++ ++ + + + ++ + ++
Sbjct: 155 KSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESV 214
Query: 345 RDQRRA-LELSFALVNSANVRSMMKE-----LLIFLEKSEPDFKAH 384
L L + + + F+EK + +FK H
Sbjct: 215 NAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKDH 260
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 26.7 bits (57), Expect = 8.7
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 7/81 (8%)
Query: 57 QDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVE-------RLMKSS 109
D+ + +K + + A+ G I L V LMK
Sbjct: 360 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 419
Query: 110 NAYIRKKAALCAYRIILKVPE 130
+ +R AA RI +PE
Sbjct: 420 SVVVRDTAAWTVGRICELLPE 440
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.369
Gapped
Lambda K H
0.267 0.0627 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,766,169
Number of extensions: 78510
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 37
Length of query: 530
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 440
Effective length of database: 1,171,896
Effective search space: 515634240
Effective search space used: 515634240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)