BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4021
(65 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VRP9|BRE1_DROME E3 ubiquitin-protein ligase Bre1 OS=Drosophila melanogaster
GN=Bre1 PE=1 SV=2
Length = 1044
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/48 (87%), Positives = 45/48 (93%)
Query: 1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
MDIKVL+FQNKKLAQR+EQ+ R EAELR RIEQLEKRQTQDDAVLNVV
Sbjct: 45 MDIKVLEFQNKKLAQRIEQRMRTEAELRHRIEQLEKRQTQDDAVLNVV 92
>sp|O75150|BRE1B_HUMAN E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1
SV=4
Length = 1001
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 39/48 (81%)
Query: 1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
MD+KVLQF+NKKLA+RLEQ+ E ELR RIE+LEKRQ DDA L +V
Sbjct: 47 MDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIV 94
>sp|Q5RAU7|BRE1B_PONAB E3 ubiquitin-protein ligase BRE1B OS=Pongo abelii GN=RNF40 PE=2
SV=1
Length = 1001
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 39/48 (81%)
Query: 1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
MD+KVLQF+NKKLA+RLEQ+ E ELR RIE+LEKRQ DDA L +V
Sbjct: 47 MDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIV 94
>sp|Q3U319|BRE1B_MOUSE E3 ubiquitin-protein ligase BRE1B OS=Mus musculus GN=Rnf40 PE=2
SV=2
Length = 1001
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 38/48 (79%)
Query: 1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
MD KVLQF+NKKLA+RLEQ+ E ELR RIE+LEKRQ DDA L +V
Sbjct: 47 MDSKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIV 94
>sp|Q8CJB9|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus norvegicus GN=Rnf40
PE=1 SV=1
Length = 1002
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 38/48 (79%)
Query: 1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
MD KVLQF+NKKLA+RLEQ+ E ELR RIE+LEKRQ DDA L +V
Sbjct: 47 MDSKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIV 94
>sp|Q4R7K7|BRE1B_MACFA E3 ubiquitin-protein ligase BRE1B OS=Macaca fascicularis GN=RNF40
PE=2 SV=1
Length = 1001
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 39/48 (81%)
Query: 1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
+D+KVLQF+NKKLA+RLEQ+ E ELR RIE+LEKRQ DDA L +V
Sbjct: 47 IDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIV 94
>sp|A2VDP1|BRE1A_BOVIN E3 ubiquitin-protein ligase BRE1A OS=Bos taurus GN=RNF20 PE=2
SV=1
Length = 975
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
+DI+ LQ +N+KLA+ L+Q+ E ELR IE+LE+RQ DDA L +V
Sbjct: 46 LDIRTLQTKNRKLAEMLDQRQAIEDELREHIEKLERRQATDDASLLIV 93
>sp|Q5DTM8|BRE1A_MOUSE E3 ubiquitin-protein ligase BRE1A OS=Mus musculus GN=Rnf20 PE=1
SV=2
Length = 973
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
+DI+ LQ +N+KLA+ L+Q+ E ELR IE+LE+RQ DDA L +V
Sbjct: 46 LDIRTLQSKNRKLAEMLDQRQAIEDELREHIEKLERRQATDDASLLIV 93
>sp|Q5VTR2|BRE1A_HUMAN E3 ubiquitin-protein ligase BRE1A OS=Homo sapiens GN=RNF20 PE=1
SV=2
Length = 975
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
+DI+ LQ +N+KLA+ L+Q+ E ELR IE+LE+RQ DDA L +V
Sbjct: 46 LDIRTLQTKNRKLAEMLDQRQAIEDELREHIEKLERRQATDDASLLIV 93
>sp|Q5ZLS3|BRE1A_CHICK E3 ubiquitin-protein ligase BRE1A OS=Gallus gallus GN=RNF20 PE=2
SV=1
Length = 984
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
+DI+ LQ +N+KLA+ L+Q+ E ELR IE+LE+RQ DDA L ++
Sbjct: 46 LDIRTLQTKNRKLAEMLDQRQAIEDELREHIEKLERRQATDDASLLII 93
>sp|Q6MLR5|RNC_BDEBA Ribonuclease 3 OS=Bdellovibrio bacteriovorus (strain ATCC 15356 /
DSM 50701 / NCIB 9529 / HD100) GN=rnc PE=3 SV=1
Length = 234
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 7 QFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVNESVY--FPN 57
QF+N L +R ELR+ +E EK + DAVL++VV E +Y FP
Sbjct: 16 QFKNPALLERALTHKSFANELRNTVEHNEKLEFLGDAVLDLVVGEFLYEKFPT 68
>sp|Q06507|ATF4_MOUSE Cyclic AMP-dependent transcription factor ATF-4 OS=Mus musculus
GN=Atf4 PE=1 SV=2
Length = 349
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 9 QNKKLAQRLEQKNRAEAE-LRSRIEQLEKRQTQDDAVLNVVVNESVYFPNLI 59
QNK A R QK RAE E L ++LEK+ + + E Y +LI
Sbjct: 285 QNKTAATRYRQKKRAEQEALTGECKELEKKNEALKEKADSLAKEIQYLKDLI 336
>sp|Q9ES19|ATF4_RAT Cyclic AMP-dependent transcription factor ATF-4 OS=Rattus
norvegicus GN=Atf4 PE=1 SV=1
Length = 347
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 9 QNKKLAQRLEQKNRAEAE-LRSRIEQLEKRQTQDDAVLNVVVNESVYFPNLI 59
QNK A R QK RAE E L ++LEK+ + + E Y +LI
Sbjct: 283 QNKTAATRYRQKKRAEQEALTGECKELEKKNEALKEKADSLAKEIQYLKDLI 334
>sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana
GN=HUB2 PE=1 SV=2
Length = 900
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQ-DDAVLNV 47
+D VLQ QN+KL Q+L+ + + ++ S+I++L+ QT DD +++V
Sbjct: 60 VDATVLQLQNQKLVQQLDLQKKQLYDVESKIQELQLNQTSYDDELISV 107
>sp|O13360|FLUF_NEUCR Conidial development protein fluffy OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=fl PE=2 SV=1
Length = 792
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 18 EQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVNE 51
++K R + LRS IE+L Q Q AV+ ++N+
Sbjct: 41 DKKWRTKDHLRSEIERLRNEQRQGHAVIRALIND 74
>sp|P50538|MAD1_MOUSE Max dimerization protein 1 OS=Mus musculus GN=Mxd1 PE=1 SV=2
Length = 227
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 32/51 (62%)
Query: 1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVNE 51
+ IK L+ ++K +++Q R + L+ R+E+L +T+ D+V +VV +E
Sbjct: 102 LHIKKLEDCDRKAVHQIDQLQREQRHLKRRLEKLGAERTRMDSVGSVVSSE 152
>sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana
GN=HUB1 PE=1 SV=1
Length = 878
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
+D VLQFQN KL+Q+LE + + L ++ Q++++Q ++ L V
Sbjct: 40 LDTAVLQFQNLKLSQKLEAQQVECSILEDKLSQIKEKQLPYNSSLKTV 87
>sp|Q8VDN4|CCD92_MOUSE Coiled-coil domain-containing protein 92 OS=Mus musculus GN=Ccdc92
PE=1 SV=1
Length = 314
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 3 IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQD 41
+K + +N+KL Q LEQKN A A L + + + EK+ ++
Sbjct: 78 LKAKEEENRKLLQELEQKNAAIAVLENTVREREKKYLEE 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,897,826
Number of Sequences: 539616
Number of extensions: 514517
Number of successful extensions: 5450
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 5372
Number of HSP's gapped (non-prelim): 109
length of query: 65
length of database: 191,569,459
effective HSP length: 37
effective length of query: 28
effective length of database: 171,603,667
effective search space: 4804902676
effective search space used: 4804902676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)