Query psy4021
Match_columns 65
No_of_seqs 45 out of 47
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 23:23:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15358 TSKS: Testis-specific 72.7 5.8 0.00013 32.4 3.9 37 3-39 141-177 (558)
2 PF09537 DUF2383: Domain of un 72.2 7.6 0.00016 23.7 3.6 47 12-58 35-81 (111)
3 PF11932 DUF3450: Protein of u 65.4 15 0.00032 25.9 4.4 38 3-40 65-102 (251)
4 PF04325 DUF465: Protein of un 62.4 18 0.00039 19.9 3.5 26 21-46 5-30 (49)
5 PF11544 Spc42p: Spindle pole 59.4 21 0.00046 22.4 3.8 33 8-40 5-37 (76)
6 PF09164 VitD-bind_III: Vitami 59.4 14 0.0003 23.0 2.9 40 10-53 15-56 (68)
7 PF10393 Matrilin_ccoil: Trime 58.8 28 0.00061 19.9 3.9 33 5-38 14-46 (47)
8 PF13870 DUF4201: Domain of un 58.7 14 0.00031 24.7 3.1 31 1-31 42-72 (177)
9 TIGR03689 pup_AAA proteasome A 44.5 41 0.00089 27.0 4.1 42 5-46 12-53 (512)
10 PRK10803 tol-pal system protei 44.5 34 0.00073 24.7 3.4 23 12-34 58-80 (263)
11 PF07106 TBPIP: Tat binding pr 41.8 75 0.0016 21.0 4.5 41 4-44 75-115 (169)
12 KOG4343|consensus 40.2 51 0.0011 27.8 4.2 39 1-39 275-319 (655)
13 TIGR00293 prefoldin, archaeal 39.9 56 0.0012 20.4 3.5 41 13-53 4-44 (126)
14 cd00584 Prefoldin_alpha Prefol 37.2 65 0.0014 20.2 3.5 39 13-51 4-42 (129)
15 PF04380 BMFP: Membrane fusoge 36.9 78 0.0017 19.1 3.7 21 17-37 52-72 (79)
16 PF04508 Pox_A_type_inc: Viral 36.8 36 0.00077 17.0 1.8 15 23-37 2-16 (23)
17 PF11853 DUF3373: Protein of u 36.7 17 0.00037 29.4 1.0 43 5-48 29-71 (489)
18 KOG2483|consensus 36.2 85 0.0018 23.0 4.4 37 3-39 107-143 (232)
19 PRK10884 SH3 domain-containing 35.6 76 0.0017 22.5 4.0 32 6-37 137-168 (206)
20 cd07660 BAR_Arfaptin The Bin/A 35.2 4.7 0.0001 29.0 -2.2 34 26-59 3-36 (201)
21 cd00011 BAR_Arfaptin_like The 34.5 11 0.00023 27.1 -0.4 34 25-58 2-35 (203)
22 PF06456 Arfaptin: Arfaptin-li 34.1 10 0.00022 27.3 -0.7 48 11-58 14-66 (229)
23 PF02344 Myc-LZ: Myc leucine z 33.2 84 0.0018 16.9 4.0 28 12-39 5-32 (32)
24 PF04568 IATP: Mitochondrial A 31.7 97 0.0021 20.0 3.7 13 20-32 88-100 (100)
25 cd07588 BAR_Amphiphysin The Bi 31.6 1.1E+02 0.0023 21.8 4.2 35 11-45 107-141 (211)
26 COG2960 Uncharacterized protei 31.2 91 0.002 20.7 3.6 19 21-39 72-90 (103)
27 PF10552 ORF6C: ORF6C domain; 30.9 1.3E+02 0.0027 19.1 4.1 31 14-44 7-37 (116)
28 cd07662 BAR_SNX6 The Bin/Amphi 29.8 61 0.0013 23.7 2.8 27 17-43 78-104 (218)
29 PF09849 DUF2076: Uncharacteri 29.3 1E+02 0.0022 22.7 3.9 27 11-37 44-70 (247)
30 TIGR01837 PHA_granule_1 poly(h 27.6 1.4E+02 0.0029 19.3 3.9 17 21-37 95-111 (118)
31 PF14739 DUF4472: Domain of un 26.9 1.5E+02 0.0033 19.5 4.1 31 5-35 14-48 (108)
32 PF12210 Hrs_helical: Hepatocy 26.9 1E+02 0.0022 20.1 3.2 32 12-43 50-81 (96)
33 PF08367 M16C_assoc: Peptidase 26.5 1.6E+02 0.0034 20.6 4.3 39 5-43 7-50 (248)
34 PF06005 DUF904: Protein of un 26.5 1.5E+02 0.0034 17.8 4.0 38 3-40 20-57 (72)
35 PF05983 Med7: MED7 protein; 26.2 1.2E+02 0.0027 20.6 3.7 24 13-36 136-159 (162)
36 PF12041 DELLA: Transcriptiona 25.7 35 0.00076 21.4 0.8 19 19-37 11-29 (73)
37 PF04102 SlyX: SlyX; InterPro 25.6 1.5E+02 0.0032 17.3 4.1 32 11-42 21-52 (69)
38 PF10779 XhlA: Haemolysin XhlA 25.6 1.5E+02 0.0032 17.3 3.5 32 14-45 5-36 (71)
39 cd07663 BAR_SNX5 The Bin/Amphi 25.3 84 0.0018 22.8 2.8 24 21-44 82-105 (218)
40 COG3082 Uncharacterized protei 24.7 1.2E+02 0.0026 19.0 3.1 26 24-49 13-38 (74)
41 TIGR01242 26Sp45 26S proteasom 24.5 1.5E+02 0.0033 21.7 4.1 30 6-35 4-33 (364)
42 PRK15422 septal ring assembly 23.8 1.1E+02 0.0024 19.4 2.8 39 5-43 29-67 (79)
43 cd07621 BAR_SNX5_6 The Bin/Amp 23.6 87 0.0019 22.6 2.6 26 18-43 80-105 (219)
44 PF06667 PspB: Phage shock pro 23.6 1.5E+02 0.0033 18.2 3.4 15 22-36 49-63 (75)
45 COG3880 Modulator of heat shoc 23.5 1.7E+02 0.0036 21.1 4.0 33 10-42 142-175 (176)
46 PF04129 Vps52: Vps52 / Sac2 f 22.8 1.5E+02 0.0032 23.4 3.9 34 2-35 50-83 (508)
47 PRK11415 hypothetical protein; 22.7 1.8E+02 0.004 17.3 3.7 25 21-45 23-48 (74)
48 TIGR02976 phageshock_pspB phag 22.6 1.6E+02 0.0035 18.0 3.4 14 23-36 50-63 (75)
49 COG3074 Uncharacterized protei 22.6 1.4E+02 0.0031 18.9 3.1 35 6-40 30-64 (79)
50 PRK13689 hypothetical protein; 22.6 1.4E+02 0.0031 18.7 3.1 25 24-48 13-37 (75)
51 PF11559 ADIP: Afadin- and alp 22.3 1.7E+02 0.0036 18.9 3.6 35 3-37 68-102 (151)
52 PRK02119 hypothetical protein; 21.6 57 0.0012 19.6 1.2 27 23-49 3-29 (73)
53 PF04642 DUF601: Protein of un 21.6 84 0.0018 24.3 2.3 35 6-40 229-277 (311)
54 COG3937 Uncharacterized conser 21.6 67 0.0014 21.4 1.6 19 19-37 80-98 (108)
55 cd07661 BAR_ICA69 The Bin/Amph 20.9 22 0.00048 26.0 -0.9 31 25-55 2-32 (204)
56 PRK13182 racA polar chromosome 20.8 1.3E+02 0.0028 20.9 3.0 24 17-40 120-143 (175)
57 PF12178 INCENP_N: Chromosome 20.7 83 0.0018 17.4 1.6 18 3-20 5-22 (38)
58 PF06785 UPF0242: Uncharacteri 20.7 1.3E+02 0.0029 24.1 3.3 42 2-43 100-148 (401)
59 KOG4367|consensus 20.7 1.7E+02 0.0036 24.7 4.0 38 11-48 279-316 (699)
60 KOG1961|consensus 20.3 1.2E+02 0.0025 26.0 3.0 35 2-36 111-145 (683)
61 PF07228 SpoIIE: Stage II spor 20.2 1.3E+02 0.0027 19.1 2.6 41 8-48 145-190 (193)
No 1
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=72.68 E-value=5.8 Score=32.43 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=33.0
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy4021 3 IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQT 39 (65)
Q Consensus 3 i~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa 39 (65)
+..||..=--|+|-||.|+.+..+||+++.||+.+|.
T Consensus 141 Vq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCr 177 (558)
T PF15358_consen 141 VQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCR 177 (558)
T ss_pred HHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4677888888999999999999999999999998774
No 2
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=72.17 E-value=7.6 Score=23.72 Aligned_cols=47 Identities=9% Similarity=0.160 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhccccCCCCce
Q psy4021 12 KLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVNESVYFPNL 58 (65)
Q Consensus 12 KLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD~tL~iVn~~~~~~~~~ 58 (65)
-+.++...++....+|+.+|..++..+.........+.+.|...+..
T Consensus 35 ~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~gs~~g~~~r~~~~ik~~ 81 (111)
T PF09537_consen 35 LFQEFAQERQQHAEELQAEIQELGGEPEESGSFKGALHRAWMDIKSA 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--H----HHCHHHH-TTTHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCcccCHHHHHHHHHHHHHHH
Confidence 35566777889999999999999999999999999999998776654
No 3
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=65.42 E-value=15 Score=25.90 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=31.4
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy4021 3 IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQ 40 (65)
Q Consensus 3 i~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa~ 40 (65)
+.-|+.+|+++...++.++.+.++|+.++++++.-...
T Consensus 65 ~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 65 IENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577889999999999999999999999988765443
No 4
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=62.39 E-value=18 Score=19.90 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhh
Q psy4021 21 NRAEAELRSRIEQLEKRQTQDDAVLN 46 (65)
Q Consensus 21 ~~~~~~Le~rieqLe~rQa~dD~tL~ 46 (65)
...+++|..+|..++.+.+++|..+-
T Consensus 5 ~~~h~~Ld~~I~~~e~~~~~~d~~l~ 30 (49)
T PF04325_consen 5 FEEHHELDKEIHRLEKRPEPDDEELE 30 (49)
T ss_dssp HHHHHHHHHHHHHHHTT--S-HHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 45678899999999999988887663
No 5
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=59.44 E-value=21 Score=22.42 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=27.2
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy4021 8 FQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQ 40 (65)
Q Consensus 8 ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa~ 40 (65)
-||+.|-..|+.++.+++.|..-+++|+.+=..
T Consensus 5 ~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiK 37 (76)
T PF11544_consen 5 KQNKELKKKLNDKQEEIDRLNILVGSLRGKLIK 37 (76)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999988888888766433
No 6
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=59.42 E-value=14 Score=22.97 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=24.2
Q ss_pred cHHHHHHHHHH--HHHHHHHHHHHHHHhhccccchhhhhhhccccC
Q psy4021 10 NKKLAQRLEQK--NRAEAELRSRIEQLEKRQTQDDAVLNVVVNESV 53 (65)
Q Consensus 10 NqKLsQ~Le~q--~~~~~~Le~rieqLe~rQa~dD~tL~iVn~~~~ 53 (65)
.+||+|+|..+ .+-+.+|+++|++= +.+-.+=+.+|.-|.
T Consensus 15 KKrL~e~l~~k~P~at~~~l~~lve~R----sdFAS~CC~~NsPPl 56 (68)
T PF09164_consen 15 KKRLAERLRAKLPDATPTELKELVEKR----SDFASKCCSINSPPL 56 (68)
T ss_dssp HHHHHHHHHHH-TTS-HHHHHHHHHHH----HHHHHHHSSTT--HH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHH----hhHHHHhhccCCCch
Confidence 47899999998 66777788877752 333344455554443
No 7
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=58.76 E-value=28 Score=19.86 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=20.2
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy4021 5 VLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQ 38 (65)
Q Consensus 5 vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQ 38 (65)
++.||++=.+. |+.=..-.+++..|++.||.++
T Consensus 14 lv~FQ~~v~~~-lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 14 LVAFQNKVTSA-LQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcc
Confidence 45677765442 2211223678999999998764
No 8
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=58.74 E-value=14 Score=24.69 Aligned_cols=31 Identities=26% Similarity=0.635 Sum_probs=25.2
Q ss_pred CchhhhhhccHHHHHHHHHHHHHHHHHHHHH
Q psy4021 1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRI 31 (65)
Q Consensus 1 lDi~vLQ~QNqKLsQ~Le~q~~~~~~Le~ri 31 (65)
+|+--||..|+.|.+++|.|..+...|..++
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~ 72 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKI 72 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666789999999999999988777776655
No 9
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=44.49 E-value=41 Score=27.04 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=35.8
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhh
Q psy4021 5 VLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLN 46 (65)
Q Consensus 5 vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD~tL~ 46 (65)
.|.-+|.+|++.|..-+.+...|++.+++|..-+.+|-..|-
T Consensus 12 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 53 (512)
T TIGR03689 12 SLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPSTYGTFLQ 53 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 355789999999999999999999999999988887754443
No 10
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=44.48 E-value=34 Score=24.71 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4021 12 KLAQRLEQKNRAEAELRSRIEQL 34 (65)
Q Consensus 12 KLsQ~Le~q~~~~~~Le~rieqL 34 (65)
.|.++|+.-+.+.+.|++.+|++
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~ 80 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQEN 80 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Confidence 56788888899999888887754
No 11
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.78 E-value=75 Score=21.02 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=24.7
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhh
Q psy4021 4 KVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAV 44 (65)
Q Consensus 4 ~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD~t 44 (65)
..+..+...|.+.+..-+.....|+..+..|.+.++..+..
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~ 115 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELR 115 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 34445555666666666666666666666666666655544
No 12
>KOG4343|consensus
Probab=40.19 E-value=51 Score=27.79 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=29.9
Q ss_pred Cchhhhh-----hccHHHHHHHHHHHHHHHH-HHHHHHHHhhccc
Q psy4021 1 MDIKVLQ-----FQNKKLAQRLEQKNRAEAE-LRSRIEQLEKRQT 39 (65)
Q Consensus 1 lDi~vLQ-----~QNqKLsQ~Le~q~~~~~~-Le~rieqLe~rQa 39 (65)
+|++|++ ..|+-.|++=.-++.|+.+ ||-|+..|.+.+.
T Consensus 275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene 319 (655)
T KOG4343|consen 275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENE 319 (655)
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888887 6788888888888888877 8888877766543
No 13
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=39.91 E-value=56 Score=20.42 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhccccC
Q psy4021 13 LAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVNESV 53 (65)
Q Consensus 13 LsQ~Le~q~~~~~~Le~rieqLe~rQa~dD~tL~iVn~~~~ 53 (65)
|.++++.=+...+.|...+.+|......++.++.+++.-+.
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~ 44 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKG 44 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44444555555666666666666666666666666655543
No 14
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.17 E-value=65 Score=20.20 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhccc
Q psy4021 13 LAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVNE 51 (65)
Q Consensus 13 LsQ~Le~q~~~~~~Le~rieqLe~rQa~dD~tL~iVn~~ 51 (65)
|.+.++.=+.....|..+++.|.....-++.++..++.-
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00584 4 LAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555555555544
No 15
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=36.88 E-value=78 Score=19.12 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy4021 17 LEQKNRAEAELRSRIEQLEKR 37 (65)
Q Consensus 17 Le~q~~~~~~Le~rieqLe~r 37 (65)
+|.++.....++.|++.|+.+
T Consensus 52 Fd~q~~~L~~~r~kl~~LEar 72 (79)
T PF04380_consen 52 FDAQKAVLARTREKLEALEAR 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444544444455555555544
No 16
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=36.79 E-value=36 Score=17.01 Aligned_cols=15 Identities=40% Similarity=0.652 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhc
Q psy4021 23 AEAELRSRIEQLEKR 37 (65)
Q Consensus 23 ~~~~Le~rieqLe~r 37 (65)
+.+.|+.||..||+.
T Consensus 2 E~~rlr~rI~dLer~ 16 (23)
T PF04508_consen 2 EMNRLRNRISDLERQ 16 (23)
T ss_pred hHHHHHHHHHHHHHH
Confidence 456777788777753
No 17
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=36.71 E-value=17 Score=29.42 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=21.3
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhh
Q psy4021 5 VLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48 (65)
Q Consensus 5 vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD~tL~iV 48 (65)
++| |=.+|.++|+.-+.+.++|..|+++.|..-+.+...+.+.
T Consensus 29 ~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~~s~~d~lk~~~D 71 (489)
T PF11853_consen 29 LLQ-KIEALKKQLEELKAQQDDLNDRVDKVEKHSAGDNLKFGGD 71 (489)
T ss_pred HHH-HHHHHHHHHHHHHHhhcccccccchhhHhhhcCcEEEeeE
Confidence 344 4445555555555555555555555555444444444333
No 18
>KOG2483|consensus
Probab=36.16 E-value=85 Score=23.01 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=31.5
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy4021 3 IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQT 39 (65)
Q Consensus 3 i~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa 39 (65)
|..|+-++....+.+|.-..+-..|+.|+++|+..+.
T Consensus 107 i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~~~~s 143 (232)
T KOG2483|consen 107 IQSLERKSATQQQDIEDLSRENRKLKARLEQLSLPQS 143 (232)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 5667788888889999999999999999999996664
No 19
>PRK10884 SH3 domain-containing protein; Provisional
Probab=35.61 E-value=76 Score=22.54 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=23.4
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4021 6 LQFQNKKLAQRLEQKNRAEAELRSRIEQLEKR 37 (65)
Q Consensus 6 LQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~r 37 (65)
|+-+|++|.+.|+.-+.+.++|+.+.+.++..
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888877777777777777766643
No 20
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=35.22 E-value=4.7 Score=29.03 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhccccchhhhhhhccccCCCCcee
Q psy4021 26 ELRSRIEQLEKRQTQDDAVLNVVVNESVYFPNLI 59 (65)
Q Consensus 26 ~Le~rieqLe~rQa~dD~tL~iVn~~~~~~~~~~ 59 (65)
+|+.|||.|++.|..|-..+-+.-++.++|-+++
T Consensus 3 eLeaklE~L~~~q~~Y~~ll~~~~~l~~~~~~l~ 36 (201)
T cd07660 3 ELEAQIEVLRDTQRKYESVLRLARALASQFYQML 36 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999988888777766665443
No 21
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=34.46 E-value=11 Score=27.15 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhccccchhhhhhhccccCCCCce
Q psy4021 25 AELRSRIEQLEKRQTQDDAVLNVVVNESVYFPNL 58 (65)
Q Consensus 25 ~~Le~rieqLe~rQa~dD~tL~iVn~~~~~~~~~ 58 (65)
++|+.++|.|++.|..|...+.++-++-++|-.+
T Consensus 2 ~eL~akle~l~~~~~~y~~Ll~~~~~~~~~~~~l 35 (203)
T cd00011 2 LELELQLELLRETKRKYESVLQLGRALTAHLYSL 35 (203)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999998887776665433
No 22
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=34.15 E-value=10 Score=27.28 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=30.1
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHhhccccchhhhhhhccccCCCCce
Q psy4021 11 KKLAQRLEQKN-----RAEAELRSRIEQLEKRQTQDDAVLNVVVNESVYFPNL 58 (65)
Q Consensus 11 qKLsQ~Le~q~-----~~~~~Le~rieqLe~rQa~dD~tL~iVn~~~~~~~~~ 58 (65)
|.+++.+.... .+-++|+.|||.|++.|..|+..+.++-++.++|-++
T Consensus 14 q~~~e~~g~~~~~~~it~D~eL~~kle~l~~~~~~y~~L~~~~~~~~~~l~~l 66 (229)
T PF06456_consen 14 QMVSEKLGKKEDSRAITVDDELDAKLELLRDTQRTYRGLLKHARAYQNRLQAL 66 (229)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555443 4567799999999999999999998887766655443
No 23
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=33.20 E-value=84 Score=16.91 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy4021 12 KLAQRLEQKNRAEAELRSRIEQLEKRQT 39 (65)
Q Consensus 12 KLsQ~Le~q~~~~~~Le~rieqLe~rQa 39 (65)
||.-.-|+=+.--..|..+++||.+.+|
T Consensus 5 kL~sekeqLrrr~eqLK~kLeqlrnS~a 32 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLKHKLEQLRNSCA 32 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4444444444445567777777776654
No 24
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=31.66 E-value=97 Score=20.02 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHH
Q psy4021 20 KNRAEAELRSRIE 32 (65)
Q Consensus 20 q~~~~~~Le~rie 32 (65)
++.+++.|+..|+
T Consensus 88 ~~k~i~~le~~I~ 100 (100)
T PF04568_consen 88 HRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 7777777777664
No 25
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=31.58 E-value=1.1e+02 Score=21.85 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhh
Q psy4021 11 KKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVL 45 (65)
Q Consensus 11 qKLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD~tL 45 (65)
+|..++-.++..-+|..+++++.|..++..|+..|
T Consensus 107 ~k~I~KR~~KllDYDr~r~~~~kL~~K~~kde~KL 141 (211)
T cd07588 107 KKRIAKRGRKLVDYDSARHNLEALKAKKKVDDQKL 141 (211)
T ss_pred HHHHHHHhhHHHhHHHHHHHHHHHHhcccccHhhH
Confidence 35555566667788899999999999988777655
No 26
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.22 E-value=91 Score=20.67 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhccc
Q psy4021 21 NRAEAELRSRIEQLEKRQT 39 (65)
Q Consensus 21 ~~~~~~Le~rieqLe~rQa 39 (65)
+..-+.|+.|++.||.+.+
T Consensus 72 R~kl~~Leari~~LEarl~ 90 (103)
T COG2960 72 REKLAALEARIEELEARLA 90 (103)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6677889999999999987
No 27
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=30.86 E-value=1.3e+02 Score=19.05 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhh
Q psy4021 14 AQRLEQKNRAEAELRSRIEQLEKRQTQDDAV 44 (65)
Q Consensus 14 sQ~Le~q~~~~~~Le~rieqLe~rQa~dD~t 44 (65)
.+.++.......+++.+++.|+.++.-+..-
T Consensus 7 ~~~~~~~~~ki~~ve~~V~~l~~~~~i~~~q 37 (116)
T PF10552_consen 7 MQATEEHNEKIEEVENRVDDLEENMPIDPGQ 37 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 4555666777788999999999888776543
No 28
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=29.78 E-value=61 Score=23.68 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchh
Q psy4021 17 LEQKNRAEAELRSRIEQLEKRQTQDDA 43 (65)
Q Consensus 17 Le~q~~~~~~Le~rieqLe~rQa~dD~ 43 (65)
|..--...+++++++.+++.+|+++|.
T Consensus 78 L~~~l~~laev~eki~~l~~~~A~~e~ 104 (218)
T cd07662 78 ICKFFLKVSELFDKTRKIEARVAADED 104 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333345678899999999999988776
No 29
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=29.32 E-value=1e+02 Score=22.69 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4021 11 KKLAQRLEQKNRAEAELRSRIEQLEKR 37 (65)
Q Consensus 11 qKLsQ~Le~q~~~~~~Le~rieqLe~r 37 (65)
+.|+|..=.+......+..||++||..
T Consensus 44 Y~laQ~vlvQE~AL~~a~~ri~eLe~q 70 (247)
T PF09849_consen 44 YYLAQTVLVQEQALKQAQARIQELEAQ 70 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999887
No 30
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=27.57 E-value=1.4e+02 Score=19.29 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy4021 21 NRAEAELRSRIEQLEKR 37 (65)
Q Consensus 21 ~~~~~~Le~rieqLe~r 37 (65)
+.+.++|+.||.+|+.+
T Consensus 95 k~ev~~L~~RI~~Le~~ 111 (118)
T TIGR01837 95 REEIEALSAKIEQLAVQ 111 (118)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777788888888764
No 31
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=26.93 E-value=1.5e+02 Score=19.48 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=19.7
Q ss_pred hhhhccHHHHHHHHHHHHHH----HHHHHHHHHHh
Q psy4021 5 VLQFQNKKLAQRLEQKNRAE----AELRSRIEQLE 35 (65)
Q Consensus 5 vLQ~QNqKLsQ~Le~q~~~~----~~Le~rieqLe 35 (65)
=||+.|.+|-|+.+.-..+. -.|++|+=.|+
T Consensus 14 DLQIe~~rL~Eq~EaE~FELk~~vL~lE~rvleLe 48 (108)
T PF14739_consen 14 DLQIETNRLREQHEAEKFELKNEVLRLENRVLELE 48 (108)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999888664332 22555544443
No 32
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=26.86 E-value=1e+02 Score=20.12 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q psy4021 12 KLAQRLEQKNRAEAELRSRIEQLEKRQTQDDA 43 (65)
Q Consensus 12 KLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD~ 43 (65)
++-+.++.++..+..|..++.+++.--+..|+
T Consensus 50 ~~i~~~ee~R~~~E~lQdkL~qi~eAR~AlDa 81 (96)
T PF12210_consen 50 KYIQEQEEKRVYYEGLQDKLAQIKEARAALDA 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888899999999999998765555443
No 33
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=26.49 E-value=1.6e+02 Score=20.59 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=29.4
Q ss_pred hhhhccHHHHHHHHHHHH-----HHHHHHHHHHHHhhccccchh
Q psy4021 5 VLQFQNKKLAQRLEQKNR-----AEAELRSRIEQLEKRQTQDDA 43 (65)
Q Consensus 5 vLQ~QNqKLsQ~Le~q~~-----~~~~Le~rieqLe~rQa~dD~ 43 (65)
...=+.++..++|+..++ +...+....+.|+.+|.+-|+
T Consensus 7 ~~~~~~~~e~~~L~~~k~~Ls~~e~~~i~~~~~~L~~~Q~~~d~ 50 (248)
T PF08367_consen 7 LSEKQEEEEKEKLAAYKASLSEEEKEKIIEQTKELKERQEAEDD 50 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHHHHHHCS--H
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCChhh
Confidence 344567788888888866 667799999999999998884
No 34
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.46 E-value=1.5e+02 Score=17.82 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=22.9
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy4021 3 IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQ 40 (65)
Q Consensus 3 i~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa~ 40 (65)
|.+||-.+..|-+.-..-..+-.+|+...++|+..+..
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666555555556666666666654443
No 35
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=26.25 E-value=1.2e+02 Score=20.55 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy4021 13 LAQRLEQKNRAEAELRSRIEQLEK 36 (65)
Q Consensus 13 LsQ~Le~q~~~~~~Le~rieqLe~ 36 (65)
+-++++.++.+.+.++..+++.++
T Consensus 136 me~Ql~~kr~~i~~i~~~~~~~~~ 159 (162)
T PF05983_consen 136 MEEQLEEKREEIEEIRKVCEKARE 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888887765
No 36
>PF12041 DELLA: Transcriptional regulator DELLA protein N terminal; InterPro: IPR021914 Gibberellins are plant hormones which have great impact on growth signalling. DELLA proteins are transcriptional regulators of growth related proteins which are downregulated when gibberellins bind to their receptor GID1. GID1 forms a complex with DELLA proteins and signals them towards 26S proteasome. The N-terminal of DELLA proteins contains conserved DELLA and VHYNP motifs which are important for GID1 binding and proteolysis of the DELLA proteins [].; PDB: 2ZSH_B 2ZSI_B.
Probab=25.72 E-value=35 Score=21.36 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy4021 19 QKNRAEAELRSRIEQLEKR 37 (65)
Q Consensus 19 ~q~~~~~~Le~rieqLe~r 37 (65)
.|.+...++..|+|+||..
T Consensus 11 VrsSdmadVAQkLEqLE~v 29 (73)
T PF12041_consen 11 VRSSDMADVAQKLEQLEMV 29 (73)
T ss_dssp -BGGGHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 4667788899999999986
No 37
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=25.62 E-value=1.5e+02 Score=17.33 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q psy4021 11 KKLAQRLEQKNRAEAELRSRIEQLEKRQTQDD 42 (65)
Q Consensus 11 qKLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD 42 (65)
..|.+.+-.+...++.|+..+..|..+-....
T Consensus 21 e~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 21 EELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777777888888888888888877765543
No 38
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=25.56 E-value=1.5e+02 Score=17.29 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhhh
Q psy4021 14 AQRLEQKNRAEAELRSRIEQLEKRQTQDDAVL 45 (65)
Q Consensus 14 sQ~Le~q~~~~~~Le~rieqLe~rQa~dD~tL 45 (65)
-+++..-..-.+.++.++..||.+.+..|.-+
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i 36 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDI 36 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666666666666555543
No 39
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=25.26 E-value=84 Score=22.81 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhhccccchhh
Q psy4021 21 NRAEAELRSRIEQLEKRQTQDDAV 44 (65)
Q Consensus 21 ~~~~~~Le~rieqLe~rQa~dD~t 44 (65)
.+..+++.+++++++.+|+++|..
T Consensus 82 ls~lae~~Ek~~~l~~r~A~~d~~ 105 (218)
T cd07663 82 LLKVAELFEKLRKVEDRVASDQDL 105 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHh
Confidence 355678999999999999997654
No 40
>COG3082 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.69 E-value=1.2e+02 Score=19.02 Aligned_cols=26 Identities=35% Similarity=0.322 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhccccchhhhhhhc
Q psy4021 24 EAELRSRIEQLEKRQTQDDAVLNVVV 49 (65)
Q Consensus 24 ~~~Le~rieqLe~rQa~dD~tL~iVn 49 (65)
+.-|.+.+.=||+-+++-|.+|.++-
T Consensus 13 e~il~e~iaVLeKH~ap~dLsLmvlG 38 (74)
T COG3082 13 EQILNELIAVLEKHKAPTDLSLMVLG 38 (74)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 44578889999999999999998763
No 41
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=24.52 E-value=1.5e+02 Score=21.67 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=15.7
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4021 6 LQFQNKKLAQRLEQKNRAEAELRSRIEQLE 35 (65)
Q Consensus 6 LQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe 35 (65)
|+-+..+|-++++.-+.+.+.++..+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLR 33 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666655555555444444433
No 42
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=23.82 E-value=1.1e+02 Score=19.37 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=28.9
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q psy4021 5 VLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDA 43 (65)
Q Consensus 5 vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD~ 43 (65)
=|+-+|..|++-.+.-++.-.+|+..-++|+..+..-..
T Consensus 29 ELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqe 67 (79)
T PRK15422 29 ELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 355788888888777777777888888888877665443
No 43
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=23.61 E-value=87 Score=22.63 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchh
Q psy4021 18 EQKNRAEAELRSRIEQLEKRQTQDDA 43 (65)
Q Consensus 18 e~q~~~~~~Le~rieqLe~rQa~dD~ 43 (65)
..--+..+++.+++.+++.+||++|.
T Consensus 80 ~~~ls~lae~~ek~~~l~~r~A~~d~ 105 (219)
T cd07621 80 DKFLLKVAETFEKLRKLEGRVASDED 105 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33345678899999999999999765
No 44
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.60 E-value=1.5e+02 Score=18.20 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhh
Q psy4021 22 RAEAELRSRIEQLEK 36 (65)
Q Consensus 22 ~~~~~Le~rieqLe~ 36 (65)
..-+.|++||+.||.
T Consensus 49 ~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 49 EQAERMEERIETLER 63 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334447777777775
No 45
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=23.51 E-value=1.7e+02 Score=21.08 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHHHHHH-HHHHHHHHhhccccch
Q psy4021 10 NKKLAQRLEQKNRAEAE-LRSRIEQLEKRQTQDD 42 (65)
Q Consensus 10 NqKLsQ~Le~q~~~~~~-Le~rieqLe~rQa~dD 42 (65)
|..|.+-++....+.++ +|..|..|+.+-..+|
T Consensus 142 ~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~~~dd 175 (176)
T COG3880 142 KEALQDLIEREEFEEAAVIRDQIRALKAKNGGDD 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 45677777777666665 9999999998755554
No 46
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=22.76 E-value=1.5e+02 Score=23.44 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=30.2
Q ss_pred chhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4021 2 DIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLE 35 (65)
Q Consensus 2 Di~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe 35 (65)
||..||=+=..++.+|+-|+.....|.+-++++=
T Consensus 50 eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ 83 (508)
T PF04129_consen 50 EIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIV 83 (508)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 5788898999999999999999999999888774
No 47
>PRK11415 hypothetical protein; Provisional
Probab=22.66 E-value=1.8e+02 Score=17.33 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhhcccc-chhhh
Q psy4021 21 NRAEAELRSRIEQLEKRQTQ-DDAVL 45 (65)
Q Consensus 21 ~~~~~~Le~rieqLe~rQa~-dD~tL 45 (65)
...+++|..+|++++...++ +|..+
T Consensus 23 ~~~h~~Ld~~I~~lE~~~~~~~d~~i 48 (74)
T PRK11415 23 FDKHNKLDHEIARKEGSDGRGYNAEV 48 (74)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 55678899999999998874 55544
No 48
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=22.64 E-value=1.6e+02 Score=17.99 Aligned_cols=14 Identities=36% Similarity=0.620 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhh
Q psy4021 23 AEAELRSRIEQLEK 36 (65)
Q Consensus 23 ~~~~Le~rieqLe~ 36 (65)
.-+.|++||+.||.
T Consensus 50 ~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 50 KADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 34558888888875
No 49
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.58 E-value=1.4e+02 Score=18.91 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=23.5
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy4021 6 LQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQ 40 (65)
Q Consensus 6 LQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa~ 40 (65)
|+=.|+.|++---.-+....+|+.+-++|++.++.
T Consensus 30 LKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~ 64 (79)
T COG3074 30 LKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG 64 (79)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777764443355667788888888877654
No 50
>PRK13689 hypothetical protein; Provisional
Probab=22.57 E-value=1.4e+02 Score=18.74 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhccccchhhhhhh
Q psy4021 24 EAELRSRIEQLEKRQTQDDAVLNVV 48 (65)
Q Consensus 24 ~~~Le~rieqLe~rQa~dD~tL~iV 48 (65)
+.-|.+.+.-||+-+++-|..|.++
T Consensus 13 E~il~el~~VLeKH~Ap~DLSLMvL 37 (75)
T PRK13689 13 EQLLAELLAVLEKHKAPTDLSLMVL 37 (75)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHH
Confidence 4456778899999999999998764
No 51
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=22.35 E-value=1.7e+02 Score=18.94 Aligned_cols=35 Identities=31% Similarity=0.398 Sum_probs=19.9
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4021 3 IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKR 37 (65)
Q Consensus 3 i~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~r 37 (65)
+.-|+-.+.+|-.+++.-..+...++.+..+++..
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~ 102 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEEKERQLQKQ 102 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666655555555555443
No 52
>PRK02119 hypothetical protein; Provisional
Probab=21.60 E-value=57 Score=19.62 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhccccchhhhhhhc
Q psy4021 23 AEAELRSRIEQLEKRQTQDDAVLNVVV 49 (65)
Q Consensus 23 ~~~~Le~rieqLe~rQa~dD~tL~iVn 49 (65)
+.+.++.||..||.+-|--+.|+--.|
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN 29 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELN 29 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777666666665544
No 53
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=21.60 E-value=84 Score=24.29 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=26.9
Q ss_pred hhhccHHHHHHHH-------------HH-HHHHHHHHHHHHHHhhcccc
Q psy4021 6 LQFQNKKLAQRLE-------------QK-NRAEAELRSRIEQLEKRQTQ 40 (65)
Q Consensus 6 LQ~QNqKLsQ~Le-------------~q-~~~~~~Le~rieqLe~rQa~ 40 (65)
|-+.|.-|+.+|+ .| +++...+++|+.+|++.|+-
T Consensus 229 LEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa~ 277 (311)
T PF04642_consen 229 LEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQAE 277 (311)
T ss_pred eecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4467888888873 22 77788899999999998863
No 54
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=21.56 E-value=67 Score=21.43 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy4021 19 QKNRAEAELRSRIEQLEKR 37 (65)
Q Consensus 19 ~q~~~~~~Le~rieqLe~r 37 (65)
+|+...++|+++|+.|+.+
T Consensus 80 ~r~~~~~~l~~rvd~Lerq 98 (108)
T COG3937 80 ARQSEMDELTERVDALERQ 98 (108)
T ss_pred cccchHHHHHHHHHHHHHH
Confidence 3456667777777777654
No 55
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=20.85 E-value=22 Score=25.96 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhccccchhhhhhhccccCCC
Q psy4021 25 AELRSRIEQLEKRQTQDDAVLNVVVNESVYF 55 (65)
Q Consensus 25 ~~Le~rieqLe~rQa~dD~tL~iVn~~~~~~ 55 (65)
.+|+.+||-+++.|..+...|.++-.|-.++
T Consensus 2 ~ELdakielfrsvq~t~~~Llk~i~~yq~~l 32 (204)
T cd07661 2 AELDAKLELFRSVQDTCLELLKIIDNYQERL 32 (204)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999998887665443
No 56
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=20.79 E-value=1.3e+02 Score=20.88 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q psy4021 17 LEQKNRAEAELRSRIEQLEKRQTQ 40 (65)
Q Consensus 17 Le~q~~~~~~Le~rieqLe~rQa~ 40 (65)
|=+++++++++..++..|+.+=+.
T Consensus 120 ll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 120 LLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445577777765555555554433
No 57
>PF12178 INCENP_N: Chromosome passenger complex (CPC) protein INCENP N terminal; InterPro: IPR022006 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. INCENP is a regulatory protein in the chromosome passenger complex. It is involved in regulation of the catalytic protein Aurora B. It performs this function in association with two other proteins - Survivin and Borealin. These proteins form a tight three-helical bundle. The N-terminal domain is the domain involved in formation of this three helical bundle. ; PDB: 2QFA_C.
Probab=20.73 E-value=83 Score=17.39 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=14.2
Q ss_pred hhhhhhccHHHHHHHHHH
Q psy4021 3 IKVLQFQNKKLAQRLEQK 20 (65)
Q Consensus 3 i~vLQ~QNqKLsQ~Le~q 20 (65)
+..++.+++|+.+++..=
T Consensus 5 ~~L~e~~~~Kl~efl~~v 22 (38)
T PF12178_consen 5 QHLLEVCDQKLQEFLCNV 22 (38)
T ss_dssp GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 356889999999998653
No 58
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.72 E-value=1.3e+02 Score=24.07 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=26.2
Q ss_pred chhhhhhccHHHHHHHHHH-------HHHHHHHHHHHHHHhhccccchh
Q psy4021 2 DIKVLQFQNKKLAQRLEQK-------NRAEAELRSRIEQLEKRQTQDDA 43 (65)
Q Consensus 2 Di~vLQ~QNqKLsQ~Le~q-------~~~~~~Le~rieqLe~rQa~dD~ 43 (65)
|..-||.||+||...|=+- +....-||+-+.+++++-+...+
T Consensus 100 e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lql 148 (401)
T PF06785_consen 100 ESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQL 148 (401)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 4566899999998776544 33444566666666655443333
No 59
>KOG4367|consensus
Probab=20.69 E-value=1.7e+02 Score=24.66 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhh
Q psy4021 11 KKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48 (65)
Q Consensus 11 qKLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD~tL~iV 48 (65)
+.||++-+.-+.+.-.|++++.+++++..-+++.|++-
T Consensus 279 ~~lsdrak~a~e~l~~lr~m~~~iq~n~~ef~a~l~~q 316 (699)
T KOG4367|consen 279 NGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQ 316 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 45666666667777789999999999999988888763
No 60
>KOG1961|consensus
Probab=20.30 E-value=1.2e+02 Score=25.99 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=31.5
Q ss_pred chhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4021 2 DIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEK 36 (65)
Q Consensus 2 Di~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~ 36 (65)
||+.||-+-.++..+|+-|++-++.|-..|+.+==
T Consensus 111 DI~~lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~iV 145 (683)
T KOG1961|consen 111 DIKILQEKSNDMQLRLENRQAVESKLSQFVDDLIV 145 (683)
T ss_pred HHHHHHHHhhHHHHHHHhHHHHHHHHHHHhccccC
Confidence 78999999999999999999999999998887643
No 61
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=20.19 E-value=1.3e+02 Score=19.13 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=27.3
Q ss_pred hccHHHHHHHHHH-----HHHHHHHHHHHHHHhhccccchhhhhhh
Q psy4021 8 FQNKKLAQRLEQK-----NRAEAELRSRIEQLEKRQTQDDAVLNVV 48 (65)
Q Consensus 8 ~QNqKLsQ~Le~q-----~~~~~~Le~rieqLe~rQa~dD~tL~iV 48 (65)
+...++.+.+... ....+.+...+..+......||.|++++
T Consensus 145 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~ 190 (193)
T PF07228_consen 145 FGEERLLELLDENRGLSPQEIIDALLEAIDRFGKGPLRDDITVLVI 190 (193)
T ss_dssp CCCHHHHHHHHCHTTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEE
T ss_pred hHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEE
Confidence 3445666666632 4555567777777778889999998765
Done!