Query psy4021
Match_columns 65
No_of_seqs 45 out of 47
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 23:23:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emc_A Monopolin complex subun 82.1 1.5 5.1E-05 30.7 3.8 41 3-43 22-62 (190)
2 1go4_E MAD1 (mitotic arrest de 81.6 0.98 3.4E-05 28.6 2.5 37 3-39 56-92 (100)
3 3m91_A Proteasome-associated A 80.4 3.6 0.00012 23.0 4.4 32 4-35 19-50 (51)
4 1nlw_A MAD protein, MAX dimeri 73.3 4.1 0.00014 24.1 3.4 32 3-34 49-80 (80)
5 1nkp_A C-MYC, MYC proto-oncoge 72.6 6.3 0.00022 23.5 4.2 34 3-36 54-87 (88)
6 3m9b_A Proteasome-associated A 64.7 8.9 0.00031 27.5 4.3 39 3-41 63-101 (251)
7 2yy0_A C-MYC-binding protein; 62.4 6.8 0.00023 21.7 2.7 31 2-32 20-50 (53)
8 1nkp_B MAX protein, MYC proto- 59.0 10 0.00035 21.8 3.2 33 3-35 49-81 (83)
9 2xdj_A Uncharacterized protein 56.2 16 0.00056 21.9 3.8 24 12-35 24-47 (83)
10 2gkw_A TNF receptor-associated 56.1 14 0.00048 23.9 3.8 37 4-40 3-39 (192)
11 1ca9_A TRAF2, protein (TNF rec 54.6 15 0.00051 23.5 3.7 37 4-40 6-42 (192)
12 2q6q_A Spindle POLE BODY compo 53.5 20 0.00067 21.7 3.8 29 8-36 3-31 (74)
13 1wlq_A Geminin; coiled-coil; 2 52.9 19 0.00063 22.1 3.7 28 9-36 39-66 (83)
14 1uii_A Geminin; human, DNA rep 51.0 24 0.00083 21.6 4.0 28 9-36 47-74 (83)
15 1aq5_A Matrilin-1, CMP, cartil 46.9 20 0.00068 19.9 2.9 12 26-37 34-45 (47)
16 3cvf_A Homer-3, homer protein 45.8 12 0.00042 22.5 2.1 29 8-36 6-34 (79)
17 2jee_A YIIU; FTSZ, septum, coi 44.3 21 0.00073 21.6 3.0 41 4-44 30-70 (81)
18 2zxx_A Geminin; coiled-coil, c 42.8 26 0.00089 21.2 3.2 27 9-35 35-61 (79)
19 2lw1_A ABC transporter ATP-bin 42.7 13 0.00046 21.7 1.8 27 21-47 21-47 (89)
20 3lt7_A Adhesin YADA; adhesion, 41.6 48 0.0016 19.4 4.1 15 23-37 35-49 (64)
21 4etr_A Putative uncharacterize 41.3 30 0.001 21.6 3.5 47 13-59 46-92 (153)
22 1t6f_A Geminin; coiled-coil, c 41.1 41 0.0014 17.9 4.0 28 9-36 8-35 (37)
23 1fxk_C Protein (prefoldin); ar 40.5 35 0.0012 20.7 3.6 41 11-51 4-44 (133)
24 3cve_A Homer protein homolog 1 39.2 46 0.0016 19.6 3.9 25 12-36 4-28 (72)
25 2l5g_B Putative uncharacterize 38.8 36 0.0012 18.5 3.0 32 12-43 6-37 (42)
26 4ghu_A TNF receptor-associated 37.5 43 0.0015 21.9 3.9 34 6-39 5-38 (198)
27 4g1a_A AQ-C16C19 peptide; heli 33.7 19 0.00066 18.4 1.3 22 24-45 2-23 (32)
28 4ec6_A Putative uncharacterize 32.2 9.4 0.00032 26.0 -0.0 37 14-51 27-63 (161)
29 3ggz_E Vacuolar protein-sortin 32.2 21 0.00073 18.1 1.3 11 9-19 16-26 (29)
30 2wvr_A Geminin; DNA replicatio 31.7 60 0.002 22.9 4.0 28 9-36 116-143 (209)
31 3t97_B Nuclear pore complex pr 30.3 20 0.00067 21.1 1.1 27 14-40 2-28 (65)
32 3hls_A Guanylate cyclase solub 30.3 49 0.0017 18.7 2.9 33 11-46 20-52 (66)
33 1i4d_A Arfaptin 2, partner of 29.8 7.7 0.00026 27.1 -0.8 33 25-57 7-39 (224)
34 1gmj_A ATPase inhibitor; coile 29.0 88 0.003 19.0 4.0 26 12-37 48-73 (84)
35 3l4q_C Phosphatidylinositol 3- 27.7 98 0.0034 20.8 4.4 33 4-36 106-138 (170)
36 2qfa_C Inner centromere protei 27.5 84 0.0029 17.4 4.4 28 3-30 9-40 (47)
37 3iv1_A Tumor susceptibility ge 27.1 75 0.0026 19.0 3.4 34 11-44 14-47 (78)
38 1zhc_A Hypothetical protein HP 27.0 82 0.0028 18.1 3.5 24 19-42 21-44 (76)
39 3gp4_A Transcriptional regulat 26.1 1E+02 0.0035 19.1 4.1 35 15-49 95-129 (142)
40 1ytz_T Troponin T; muscle, THI 25.6 1.1E+02 0.0036 19.1 4.0 26 10-35 65-90 (107)
41 1fzc_C Fibrin; blood coagulati 25.3 1E+02 0.0034 22.4 4.4 33 9-41 19-51 (319)
42 2zvf_A Alanyl-tRNA synthetase; 24.6 50 0.0017 20.5 2.4 38 5-42 22-59 (171)
43 2ic6_A Nucleocapsid protein; h 24.0 81 0.0028 19.0 3.1 21 16-36 46-66 (78)
44 2k48_A Nucleoprotein; viral pr 23.9 76 0.0026 20.2 3.1 21 16-36 76-96 (107)
45 1hwt_C Protein (heme activator 23.7 69 0.0024 17.4 2.6 16 22-37 58-73 (81)
46 1lwu_C Fibrinogen gamma chain; 23.6 1.1E+02 0.0036 22.3 4.2 31 10-40 28-58 (323)
47 3f1i_H Hepatocyte growth facto 22.9 86 0.0029 19.7 3.2 31 12-42 52-82 (98)
48 2juz_A UPF0352 protein HI0840; 22.2 89 0.003 19.0 3.1 25 24-48 13-37 (80)
49 3ra3_B P2F; coiled coil domain 22.1 75 0.0026 15.7 2.3 21 6-26 5-25 (28)
50 2juw_A UPF0352 protein SO_2176 22.0 90 0.0031 19.0 3.1 25 24-48 13-37 (80)
51 2l3n_A DNA-binding protein RAP 21.9 45 0.0015 20.9 1.7 38 5-42 21-58 (104)
52 2wuj_A Septum site-determining 21.8 95 0.0033 16.8 3.0 24 13-36 32-55 (57)
53 2jpq_A UPF0352 protein VP2129; 21.7 92 0.0031 19.1 3.1 25 24-48 13-37 (83)
54 3hhm_B NISH2 P85alpha; PI3KCA, 21.6 1.3E+02 0.0045 22.0 4.4 31 5-35 216-246 (373)
55 2jr2_A UPF0352 protein CPS_261 21.4 87 0.003 18.9 2.9 25 24-48 13-37 (76)
56 3ci9_A Heat shock factor-bindi 20.7 1.1E+02 0.0039 16.6 3.1 25 12-36 13-45 (48)
57 2jrx_A UPF0352 protein YEJL; h 20.4 92 0.0031 19.1 2.9 25 24-48 13-37 (83)
58 2er8_A Regulatory protein Leu3 20.4 89 0.003 16.6 2.6 16 22-37 49-64 (72)
59 2ic9_A Nucleocapsid protein; h 20.3 1E+02 0.0035 19.2 3.1 21 16-36 46-66 (96)
No 1
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=82.13 E-value=1.5 Score=30.66 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=34.4
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q psy4021 3 IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDA 43 (65)
Q Consensus 3 i~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD~ 43 (65)
+.-|+.+|.-|+++|+.+..++..|+.++..++..-...|.
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~ 62 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKT 62 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 45688999999999999999999999999888876654443
No 2
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=81.62 E-value=0.98 Score=28.56 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=33.3
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy4021 3 IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQT 39 (65)
Q Consensus 3 i~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa 39 (65)
.+||.|.|.+.+...+..+.....|+.-++.|+.+=.
T Consensus 56 TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 56 TKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999987643
No 3
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=80.42 E-value=3.6 Score=23.03 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=28.0
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4021 4 KVLQFQNKKLAQRLEQKNRAEAELRSRIEQLE 35 (65)
Q Consensus 4 ~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe 35 (65)
..|.-+|.+|++-|+.-+.++..|.+.++.|-
T Consensus 19 ~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 19 DSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667899999999999999999999999874
No 4
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=73.31 E-value=4.1 Score=24.06 Aligned_cols=32 Identities=28% Similarity=0.516 Sum_probs=25.3
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4021 3 IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQL 34 (65)
Q Consensus 3 i~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqL 34 (65)
|..|+-++++|.+..+.-+.+..+|+.++++|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 66788888888888888888888888887764
No 5
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=72.64 E-value=6.3 Score=23.48 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=28.9
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4021 3 IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEK 36 (65)
Q Consensus 3 i~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~ 36 (65)
|.-|+-+++++.+..+.-+.+-..|+.++++|+.
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6678888999998888888888899999998863
No 6
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=64.69 E-value=8.9 Score=27.54 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=33.5
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy4021 3 IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQD 41 (65)
Q Consensus 3 i~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa~d 41 (65)
+.-|+-+|.+|.+.|+.-+.+...|+..+++|.+-+..+
T Consensus 63 l~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~i 101 (251)
T 3m9b_A 63 IDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGY 101 (251)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 345678999999999999999999999999999876543
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=62.38 E-value=6.8 Score=21.74 Aligned_cols=31 Identities=13% Similarity=0.410 Sum_probs=17.6
Q ss_pred chhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Q psy4021 2 DIKVLQFQNKKLAQRLEQKNRAEAELRSRIE 32 (65)
Q Consensus 2 Di~vLQ~QNqKLsQ~Le~q~~~~~~Le~rie 32 (65)
|+-.|+..|..|-++.+.=.....+|..+++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666665555555555555544
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=59.04 E-value=10 Score=21.82 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=22.2
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4021 3 IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLE 35 (65)
Q Consensus 3 i~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe 35 (65)
|+.|+-+++.|.+.++.-+.+...|+.++..|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556677777777766666666777777666553
No 9
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=56.21 E-value=16 Score=21.86 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy4021 12 KLAQRLEQKNRAEAELRSRIEQLE 35 (65)
Q Consensus 12 KLsQ~Le~q~~~~~~Le~rieqLe 35 (65)
.|.++|+.-+.+.+.|++.+|++.
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~ 47 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQ 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 467778888888888888877653
No 10
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=56.14 E-value=14 Score=23.87 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=29.2
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy4021 4 KVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQ 40 (65)
Q Consensus 4 ~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa~ 40 (65)
..|.-+...+..++..++....+|+.+++.++..++.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYN 39 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 3455666777788888889999999999999986543
No 11
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=54.56 E-value=15 Score=23.50 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=29.5
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy4021 4 KVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQ 40 (65)
Q Consensus 4 ~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa~ 40 (65)
.-|...-++|.++|-.+.....+|+++++.++...+.
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (192)
T 1ca9_A 6 EALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYD 42 (192)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 3455555678899999999999999999999976443
No 12
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=53.54 E-value=20 Score=21.69 Aligned_cols=29 Identities=34% Similarity=0.377 Sum_probs=21.9
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4021 8 FQNKKLAQRLEQKNRAEAELRSRIEQLEK 36 (65)
Q Consensus 8 ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~ 36 (65)
-||+.|-.+|..++.+++.|-.-+..|..
T Consensus 3 kQNKeL~~kl~~Kq~EI~rLnvlvgslR~ 31 (74)
T 2q6q_A 3 QQNKELNFKLREKQNEIFELKKIAETLRS 31 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999888886555555443
No 13
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=52.91 E-value=19 Score=22.14 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4021 9 QNKKLAQRLEQKNRAEAELRSRIEQLEK 36 (65)
Q Consensus 9 QNqKLsQ~Le~q~~~~~~Le~rieqLe~ 36 (65)
.|.+|-+.++.+..+++.|+.+.++|..
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999988888764
No 14
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=51.03 E-value=24 Score=21.58 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=23.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4021 9 QNKKLAQRLEQKNRAEAELRSRIEQLEK 36 (65)
Q Consensus 9 QNqKLsQ~Le~q~~~~~~Le~rieqLe~ 36 (65)
.|.+|-++++...-+.+.|+...++|..
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999998888888888887764
No 15
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=46.85 E-value=20 Score=19.87 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=8.0
Q ss_pred HHHHHHHHHhhc
Q psy4021 26 ELRSRIEQLEKR 37 (65)
Q Consensus 26 ~Le~rieqLe~r 37 (65)
++..|++.|+.+
T Consensus 34 ~vt~rle~lEnr 45 (47)
T 1aq5_A 34 AVAKRIEALENK 45 (47)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 667777777654
No 16
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=45.78 E-value=12 Score=22.51 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=19.0
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4021 8 FQNKKLAQRLEQKNRAEAELRSRIEQLEK 36 (65)
Q Consensus 8 ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~ 36 (65)
.++..++++|+.-...-++|+.+|..|+.
T Consensus 6 ~e~e~~~~klq~~E~rN~~Le~~v~~le~ 34 (79)
T 3cvf_A 6 AEREETQQKVQDLETRNAELEHQLRAMER 34 (79)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45667788887777777778888877764
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=44.28 E-value=21 Score=21.62 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=31.9
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhh
Q psy4021 4 KVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAV 44 (65)
Q Consensus 4 ~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD~t 44 (65)
.-|+-+|..|++..+.=++...+|+...++|+..++.-+.-
T Consensus 30 eELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 30 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34778899999888887888888888888888877665543
No 18
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=42.77 E-value=26 Score=21.18 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=20.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4021 9 QNKKLAQRLEQKNRAEAELRSRIEQLE 35 (65)
Q Consensus 9 QNqKLsQ~Le~q~~~~~~Le~rieqLe 35 (65)
.|++|-+.++..+.++..|+.....|+
T Consensus 35 EN~~Lh~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888888888777655554
No 19
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=42.65 E-value=13 Score=21.75 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhh
Q psy4021 21 NRAEAELRSRIEQLEKRQTQDDAVLNV 47 (65)
Q Consensus 21 ~~~~~~Le~rieqLe~rQa~dD~tL~i 47 (65)
+++...|+.+|++|+.+.+..++.|.-
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 346677888888888888877777753
No 20
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=41.62 E-value=48 Score=19.36 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhc
Q psy4021 23 AEAELRSRIEQLEKR 37 (65)
Q Consensus 23 ~~~~Le~rieqLe~r 37 (65)
..+.|.++|+++++|
T Consensus 35 KF~qL~nKi~k~~kr 49 (64)
T 3lt7_A 35 KFHQLENRLDKLEKR 49 (64)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345588888888876
No 21
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=41.34 E-value=30 Score=21.63 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhccccCCCCcee
Q psy4021 13 LAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVNESVYFPNLI 59 (65)
Q Consensus 13 LsQ~Le~q~~~~~~Le~rieqLe~rQa~dD~tL~iVn~~~~~~~~~~ 59 (65)
+.++...++....+|+.+|.+++..+.........+-+.|...+.++
T Consensus 46 f~~~a~~~~~~~~eL~~~i~~lGg~p~~~~s~~g~~hr~~~~lks~~ 92 (153)
T 4etr_A 46 MLEQSRDCAAAADELERIVLELGGKPKDSTSFAGDLHRRWVDLKSLV 92 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHh
Confidence 44555777888999999999999998877777778888887666554
No 22
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=41.15 E-value=41 Score=17.88 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=24.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4021 9 QNKKLAQRLEQKNRAEAELRSRIEQLEK 36 (65)
Q Consensus 9 QNqKLsQ~Le~q~~~~~~Le~rieqLe~ 36 (65)
.|.||-.-++++..+++.|+.+=++|.+
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 5889999999999999999999888754
No 23
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=40.55 E-value=35 Score=20.72 Aligned_cols=41 Identities=5% Similarity=0.118 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhccc
Q psy4021 11 KKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVNE 51 (65)
Q Consensus 11 qKLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD~tL~iVn~~ 51 (65)
++|.+++..=+.....|..++++|+....-++.++..++.-
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l 44 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDI 44 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555566666667777777777777777776666653
No 24
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=39.21 E-value=46 Score=19.62 Aligned_cols=25 Identities=12% Similarity=0.339 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4021 12 KLAQRLEQKNRAEAELRSRIEQLEK 36 (65)
Q Consensus 12 KLsQ~Le~q~~~~~~Le~rieqLe~ 36 (65)
.++++|+.-...-..|+++|..|+.
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~ 28 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQ 28 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4667777666666667777766654
No 25
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=38.78 E-value=36 Score=18.52 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q psy4021 12 KLAQRLEQKNRAEAELRSRIEQLEKRQTQDDA 43 (65)
Q Consensus 12 KLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD~ 43 (65)
-|-|+++-=-+++.-.|.+|+.|.+++....+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777778888888888888888766544
No 26
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=37.47 E-value=43 Score=21.86 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=26.7
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy4021 6 LQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQT 39 (65)
Q Consensus 6 LQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa 39 (65)
|.-+=.+|...|..+...+.+||.++..++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 38 (198)
T 4ghu_A 5 LESQLSRHDQMLSVHDIRLADMDLRFQVLETASY 38 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3333467788888889999999999999998543
No 27
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=33.75 E-value=19 Score=18.44 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhccccchhhh
Q psy4021 24 EAELRSRIEQLEKRQTQDDAVL 45 (65)
Q Consensus 24 ~~~Le~rieqLe~rQa~dD~tL 45 (65)
+.+||.+|.-|+.+++.-+--+
T Consensus 2 iaaleqkiaaleqkcaaceqki 23 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQKI 23 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888765443
No 28
>4ec6_A Putative uncharacterized protein; GRAM-positive, conjugation, NTF2-like, unknown function; 2.50A {Enterococcus faecalis}
Probab=32.22 E-value=9.4 Score=25.98 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhccc
Q psy4021 14 AQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVNE 51 (65)
Q Consensus 14 sQ~Le~q~~~~~~Le~rieqLe~rQa~dD~tL~iVn~~ 51 (65)
|++|+..+.+.+.|++.|++|+.-|. +-.-+-+|+|+
T Consensus 27 ~~~~k~~kke~~~L~~qv~~vk~~q~-~q~kvDvF~Ry 63 (161)
T 4ec6_A 27 STQLQSVKKESELLEEQIERVKETDI-SQSKIDTFGRY 63 (161)
T ss_dssp ---------------------------CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhhhhh-hCCcceeeehh
Confidence 48899999999999999999998887 44555666665
No 29
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=32.15 E-value=21 Score=18.08 Aligned_cols=11 Identities=55% Similarity=0.730 Sum_probs=8.6
Q ss_pred ccHHHHHHHHH
Q psy4021 9 QNKKLAQRLEQ 19 (65)
Q Consensus 9 QNqKLsQ~Le~ 19 (65)
+--||+|||..
T Consensus 16 kEDkLAqRLRA 26 (29)
T 3ggz_E 16 KEDKLAQRLRA 26 (29)
T ss_pred hhHHHHHHHHH
Confidence 44689999975
No 30
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=31.65 E-value=60 Score=22.88 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4021 9 QNKKLAQRLEQKNRAEAELRSRIEQLEK 36 (65)
Q Consensus 9 QNqKLsQ~Le~q~~~~~~Le~rieqLe~ 36 (65)
.|.+|-++++...-+++.|+.+.++|+.
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888877777776666665543
No 31
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=30.32 E-value=20 Score=21.06 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy4021 14 AQRLEQKNRAEAELRSRIEQLEKRQTQ 40 (65)
Q Consensus 14 sQ~Le~q~~~~~~Le~rieqLe~rQa~ 40 (65)
||..+.+....+-+++.+.+|.++++.
T Consensus 2 ~~~t~~H~~~Ld~i~~el~eLq~~~~~ 28 (65)
T 3t97_B 2 SHMTKQHQTRLDIISEDISELQKNQTT 28 (65)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777788888888877765
No 32
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=30.26 E-value=49 Score=18.71 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhh
Q psy4021 11 KKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLN 46 (65)
Q Consensus 11 qKLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD~tL~ 46 (65)
-+|+.++|... +.|+.+.++|+......|..|.
T Consensus 20 ~~L~~~lE~~~---~~Lee~t~~L~~EK~ktd~LL~ 52 (66)
T 3hls_A 20 YKLTQELEMLT---DRLQLTLRALEDEKKKTDTLLY 52 (66)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 35666775544 5688888888766655555443
No 33
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=29.77 E-value=7.7 Score=27.13 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhccccchhhhhhhccccCCCCc
Q psy4021 25 AELRSRIEQLEKRQTQDDAVLNVVVNESVYFPN 57 (65)
Q Consensus 25 ~~Le~rieqLe~rQa~dD~tL~iVn~~~~~~~~ 57 (65)
.+|+.|||.|++.|..|...+-++-++.++|-.
T Consensus 7 ~EL~~klE~l~~~q~~Y~~L~~~~~~l~~~~~~ 39 (224)
T 1i4d_A 7 LELELQIELLRETKRKYESVLQLGRALTAHLYS 39 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999888877666555543
No 34
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=29.02 E-value=88 Score=19.02 Aligned_cols=26 Identities=12% Similarity=0.261 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4021 12 KLAQRLEQKNRAEAELRSRIEQLEKR 37 (65)
Q Consensus 12 KLsQ~Le~q~~~~~~Le~rieqLe~r 37 (65)
++-+.|+++..++..|+..|+..+.+
T Consensus 48 kl~~el~~h~~ei~~le~~i~rhk~~ 73 (84)
T 1gmj_A 48 HKENEISHHAKEIERLQKEIERHKQS 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777777777777777665543
No 35
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=27.68 E-value=98 Score=20.78 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=27.6
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4021 4 KVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEK 36 (65)
Q Consensus 4 ~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~ 36 (65)
+.|.-+..+|.+-|+.+.....+|+.+++.|+.
T Consensus 106 ~~l~~sk~~L~e~L~~q~~~~relERemnsLKP 138 (170)
T 3l4q_C 106 AEIHESRTKLEQELRAQASDNREIDKRMNSLKP 138 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 456667889999999999999999988888864
No 36
>2qfa_C Inner centromere protein; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=27.48 E-value=84 Score=17.39 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=19.2
Q ss_pred hhhhhhccHHHHHHHHHH----HHHHHHHHHH
Q psy4021 3 IKVLQFQNKKLAQRLEQK----NRAEAELRSR 30 (65)
Q Consensus 3 i~vLQ~QNqKLsQ~Le~q----~~~~~~Le~r 30 (65)
+..|+.+++||.+++..= -.|..+.++.
T Consensus 9 ~~Lle~c~~Kl~eF~~~vdnk~mvWL~EIeeE 40 (47)
T 2qfa_C 9 IHLLELCDQKLMEFLCNMDNKDLVWLEEIQEE 40 (47)
T ss_dssp THHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 457899999999998653 3454444443
No 37
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=27.08 E-value=75 Score=19.03 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhh
Q psy4021 11 KKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAV 44 (65)
Q Consensus 11 qKLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD~t 44 (65)
+.+.+.+.+.+++.++|+.-=+.|.+-++.-|.+
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~m 47 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEM 47 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 5566777777777777555444444444444433
No 38
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=26.98 E-value=82 Score=18.09 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhccccch
Q psy4021 19 QKNRAEAELRSRIEQLEKRQTQDD 42 (65)
Q Consensus 19 ~q~~~~~~Le~rieqLe~rQa~dD 42 (65)
.-+...++|...|..++.+..+++
T Consensus 21 ~L~~eH~~LD~~I~~le~~~~~~~ 44 (76)
T 1zhc_A 21 KIFEKHNQLDDDIKTAEQQNASDA 44 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCChH
Confidence 335677889999999999999887
No 39
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=26.11 E-value=1e+02 Score=19.09 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhc
Q psy4021 15 QRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVV 49 (65)
Q Consensus 15 Q~Le~q~~~~~~Le~rieqLe~rQa~dD~tL~iVn 49 (65)
++++.-....+.|+.+++..+.....-+..+..+|
T Consensus 95 ~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~ 129 (142)
T 3gp4_A 95 NRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFN 129 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 33333344444455555555555544555554444
No 40
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=25.55 E-value=1.1e+02 Score=19.08 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=20.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4021 10 NKKLAQRLEQKNRAEAELRSRIEQLE 35 (65)
Q Consensus 10 NqKLsQ~Le~q~~~~~~Le~rieqLe 35 (65)
..-|-.+++.+.+++.+|..|+++|.
T Consensus 65 KYDlE~kv~kq~yEI~eL~~rV~dlg 90 (107)
T 1ytz_T 65 KYDFAEQIKRKKYEIVTLRNRIDQAQ 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhHHHHHHhhhhHHHHHHHHHHHhc
Confidence 34455667777889999999999984
No 41
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=25.32 E-value=1e+02 Score=22.39 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy4021 9 QNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQD 41 (65)
Q Consensus 9 QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa~d 41 (65)
+=+.|...|+..+..+..|+.+|.+|+.++...
T Consensus 19 ~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~~ 51 (319)
T 1fzc_C 19 SIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEP 51 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345677788888899999999999999877653
No 42
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=24.57 E-value=50 Score=20.47 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=29.3
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q psy4021 5 VLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDD 42 (65)
Q Consensus 5 vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD 42 (65)
.|+..+..+.++++.-..+..+|+.++++|+.+.+...
T Consensus 22 ~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 22 ILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp TTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567788888888888889999999988877764
No 43
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=23.96 E-value=81 Score=18.96 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy4021 16 RLEQKNRAEAELRSRIEQLEK 36 (65)
Q Consensus 16 ~Le~q~~~~~~Le~rieqLe~ 36 (65)
-++.|+...+.|+.++.+|+.
T Consensus 46 ~~~~R~~~V~~lq~Ki~elkr 66 (78)
T 2ic6_A 46 TLQSRRAAVSALETKLGELKR 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366788889999999999874
No 44
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=23.92 E-value=76 Score=20.24 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy4021 16 RLEQKNRAEAELRSRIEQLEK 36 (65)
Q Consensus 16 ~Le~q~~~~~~Le~rieqLe~ 36 (65)
-++.|+...+.|+.|+.+|+.
T Consensus 76 tl~~R~~~Vsalq~KiaeLKr 96 (107)
T 2k48_A 76 TLQNRRAAVSTLETKLGELKR 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366788889999999999975
No 45
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=23.67 E-value=69 Score=17.37 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhc
Q psy4021 22 RAEAELRSRIEQLEKR 37 (65)
Q Consensus 22 ~~~~~Le~rieqLe~r 37 (65)
...+.|+.+|.+||..
T Consensus 58 ~~~~~L~~ri~~LE~~ 73 (81)
T 1hwt_C 58 NELKKLRERVKSLEKT 73 (81)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5577789999988864
No 46
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.60 E-value=1.1e+02 Score=22.31 Aligned_cols=31 Identities=6% Similarity=0.186 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy4021 10 NKKLAQRLEQKNRAEAELRSRIEQLEKRQTQ 40 (65)
Q Consensus 10 NqKLsQ~Le~q~~~~~~Le~rieqLe~rQa~ 40 (65)
-+.|.+.|+.....+.+|+.+|.+|+.++..
T Consensus 28 i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~ 58 (323)
T 1lwu_C 28 IQELSEMWRVNQQFVTRLQQQLVDIRQTCSR 58 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3557777777788888888888888887654
No 47
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=22.95 E-value=86 Score=19.71 Aligned_cols=31 Identities=13% Similarity=0.257 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q psy4021 12 KLAQRLEQKNRAEAELRSRIEQLEKRQTQDD 42 (65)
Q Consensus 12 KLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD 42 (65)
++-+.+|.++..+..|+.++.+++.--+..|
T Consensus 52 ~~i~~~ee~R~~yE~LQDkL~qi~eAR~ALd 82 (98)
T 3f1i_H 52 ELLNQLDERRLYYEGLQDKLAQIRDARGALS 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888889999998876544444
No 48
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=22.24 E-value=89 Score=18.99 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhccccchhhhhhh
Q psy4021 24 EAELRSRIEQLEKRQTQDDAVLNVV 48 (65)
Q Consensus 24 ~~~Le~rieqLe~rQa~dD~tL~iV 48 (65)
+.-|.+.+.-||+.+++-|..|.++
T Consensus 13 E~ll~eli~VLEKH~Ap~DLSLMvL 37 (80)
T 2juz_A 13 SAIVNDMIAVLEKHKAPVDLSLIAL 37 (80)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3446778899999999999998764
No 49
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.09 E-value=75 Score=15.73 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=8.5
Q ss_pred hhhccHHHHHHHHHHHHHHHH
Q psy4021 6 LQFQNKKLAQRLEQKNRAEAE 26 (65)
Q Consensus 6 LQ~QNqKLsQ~Le~q~~~~~~ 26 (65)
|+-.|-.|-|-+-.-.+++.+
T Consensus 5 lkqknarlkqeiaaleyeiaa 25 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHH
Confidence 344444444433333333333
No 50
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=22.03 E-value=90 Score=18.96 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhccccchhhhhhh
Q psy4021 24 EAELRSRIEQLEKRQTQDDAVLNVV 48 (65)
Q Consensus 24 ~~~Le~rieqLe~rQa~dD~tL~iV 48 (65)
+.-|.+.+.-||+.+++-|..|.++
T Consensus 13 E~ll~eli~VLEKH~Ap~DLSLMvL 37 (80)
T 2juw_A 13 ESLIAEILVVLEKHKAPTDLSLMAL 37 (80)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHH
Confidence 4456778899999999999998764
No 51
>2l3n_A DNA-binding protein RAP1, telomere length regulat; TAZ1; NMR {Schizosaccharomyces pombe}
Probab=21.85 E-value=45 Score=20.88 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=31.5
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q psy4021 5 VLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDD 42 (65)
Q Consensus 5 vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD 42 (65)
+|.|.|.--.|+||.-.+-.-.++--|.+|-++|++--
T Consensus 21 ilrytnsteqqfleamestggrvriaiakllskqtsgg 58 (104)
T 2l3n_A 21 ILRYTNSTEQQFLEAMESTGGRVRIAIAKLLSKQTSGG 58 (104)
T ss_dssp HHHHHTCCHHHHHHHHHHHTTCHHHHHHHHHTTSCCCC
T ss_pred HHHhccchHHHHHHHHHhcCCeeehHHHHHHhhccCCC
Confidence 57888888888888877777778888999999998753
No 52
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=21.79 E-value=95 Score=16.85 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy4021 13 LAQRLEQKNRAEAELRSRIEQLEK 36 (65)
Q Consensus 13 LsQ~Le~q~~~~~~Le~rieqLe~ 36 (65)
+++-++.-..+..+|+.+++.|+.
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555666667777666654
No 53
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=21.69 E-value=92 Score=19.06 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhccccchhhhhhh
Q psy4021 24 EAELRSRIEQLEKRQTQDDAVLNVV 48 (65)
Q Consensus 24 ~~~Le~rieqLe~rQa~dD~tL~iV 48 (65)
+.-|.+.+.-||+.+|+-|..|.++
T Consensus 13 E~ll~eli~VLEKH~Ap~DLSLMvL 37 (83)
T 2jpq_A 13 EKILAEVALVLEKHAASPELTLMIA 37 (83)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHH
Confidence 4456778899999999999998764
No 54
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=21.58 E-value=1.3e+02 Score=21.97 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=24.5
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4021 5 VLQFQNKKLAQRLEQKNRAEAELRSRIEQLE 35 (65)
Q Consensus 5 vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe 35 (65)
.+.-+-.+|-+-|+.+.....+++.+++.|+
T Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lk 246 (373)
T 3hhm_B 216 EIIDSRRRLEEDLKKQAAEYREIDKRMNSIK 246 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4456677899999999988888888888653
No 55
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=21.38 E-value=87 Score=18.88 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhccccchhhhhhh
Q psy4021 24 EAELRSRIEQLEKRQTQDDAVLNVV 48 (65)
Q Consensus 24 ~~~Le~rieqLe~rQa~dD~tL~iV 48 (65)
+.-|.+.+.-||+.+++-|..|.++
T Consensus 13 E~ll~eli~VLEKH~Ap~DLSLMvL 37 (76)
T 2jr2_A 13 EKIIQDLLDVLVKEEVTPDLALMCL 37 (76)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3446778899999999999998764
No 56
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=20.71 E-value=1.1e+02 Score=16.57 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHhh
Q psy4021 12 KLAQRLEQKNRA--------EAELRSRIEQLEK 36 (65)
Q Consensus 12 KLsQ~Le~q~~~--------~~~Le~rieqLe~ 36 (65)
.|-+++..|+.. +++.-.||..||.
T Consensus 13 ~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~ 45 (48)
T 3ci9_A 13 TLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEK 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 344555555443 4556666666654
No 57
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=20.39 E-value=92 Score=19.05 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhccccchhhhhhh
Q psy4021 24 EAELRSRIEQLEKRQTQDDAVLNVV 48 (65)
Q Consensus 24 ~~~Le~rieqLe~rQa~dD~tL~iV 48 (65)
+.-|.+.+.-||+.+++-|..|.++
T Consensus 13 E~ll~eli~VLEKH~Ap~DLSLMvL 37 (83)
T 2jrx_A 13 EQLLAELLNVLEKHKAPTDLSLMVL 37 (83)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3446778899999999999998764
No 58
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=20.36 E-value=89 Score=16.60 Aligned_cols=16 Identities=13% Similarity=0.376 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhhc
Q psy4021 22 RAEAELRSRIEQLEKR 37 (65)
Q Consensus 22 ~~~~~Le~rieqLe~r 37 (65)
....+|+.+|+.|+..
T Consensus 49 ~~~~~Le~ri~~Le~~ 64 (72)
T 2er8_A 49 ARNEAIEKRFKELTRT 64 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566666666653
No 59
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=20.26 E-value=1e+02 Score=19.22 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy4021 16 RLEQKNRAEAELRSRIEQLEK 36 (65)
Q Consensus 16 ~Le~q~~~~~~Le~rieqLe~ 36 (65)
-+..|+...+.|+.++.+|+.
T Consensus 46 ~~~~R~~~V~~lq~Ki~elkr 66 (96)
T 2ic9_A 46 TLQSRRAAVSALETKLGELKR 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366788888999999999875
Done!