Query psy4021
Match_columns 65
No_of_seqs 45 out of 47
Neff 3.8
Searched_HMMs 13730
Date Fri Aug 16 23:23:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4021.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4021hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkpa_ a.38.1.1 (A:) Myc prot 67.7 4.5 0.00032 22.1 4.2 33 3-35 54-86 (88)
2 d1nkpb_ a.38.1.1 (B:) Max prot 59.8 4.7 0.00034 21.8 3.2 33 3-35 49-81 (83)
3 d1kxpd3 a.126.1.1 (D:405-473) 56.7 3.8 0.00028 23.2 2.4 41 10-54 15-57 (69)
4 d1nlwa_ a.38.1.1 (A:) Mad prot 46.0 12 0.00088 19.8 3.4 30 3-32 49-78 (79)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 32.9 26 0.0019 19.7 3.6 26 17-42 10-35 (133)
6 d2otaa1 a.284.1.1 (A:7-68) Hyp 29.0 28 0.002 18.9 3.1 26 23-48 6-31 (62)
7 d2juza1 a.284.1.1 (A:1-72) Unc 26.4 32 0.0023 19.1 3.1 25 24-48 13-37 (72)
8 d2jpqa1 a.284.1.1 (A:1-75) Hyp 25.0 35 0.0025 19.1 3.1 25 24-48 13-37 (75)
9 d2qtia1 a.284.1.1 (A:8-72) Unc 24.8 33 0.0024 18.7 2.9 26 23-48 5-30 (65)
10 d2jrxa1 a.284.1.1 (A:1-75) Unc 23.8 34 0.0025 19.1 2.9 25 24-48 13-37 (75)
No 1
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.70 E-value=4.5 Score=22.14 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=23.8
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4021 3 IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLE 35 (65)
Q Consensus 3 i~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe 35 (65)
|.-|+-++..|.+..+.-+...+.|..++++|.
T Consensus 54 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~ 86 (88)
T d1nkpa_ 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667777777777776777777888887775
No 2
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.79 E-value=4.7 Score=21.81 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=24.2
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4021 3 IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLE 35 (65)
Q Consensus 3 i~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe 35 (65)
|+.|+=+++.|.+.++.-+.....|+.++++|+
T Consensus 49 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~ 81 (83)
T d1nkpb_ 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455667777888887777777777888877664
No 3
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.72 E-value=3.8 Score=23.17 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=26.3
Q ss_pred cHHHHHHHHHH--HHHHHHHHHHHHHHhhccccchhhhhhhccccCC
Q psy4021 10 NKKLAQRLEQK--NRAEAELRSRIEQLEKRQTQDDAVLNVVVNESVY 54 (65)
Q Consensus 10 NqKLsQ~Le~q--~~~~~~Le~rieqLe~rQa~dD~tL~iVn~~~~~ 54 (65)
.+||+|+|..+ .+-+.+|++++++ -+.+-.+-+.+|.-|.+
T Consensus 15 kkkL~e~lr~k~P~as~~~l~~mVek----rsdfASkCCsiNsPPlY 57 (69)
T d1kxpd3 15 KKKLAERLKAKLPDATPKELAKLVNK----RSDFASNCCSINSPPLY 57 (69)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHH----HHHHHHHHSSTTCCHHH
T ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHH----HhHHHHHhhcCCCCchh
Confidence 47899999998 5666777777765 23333444555655543
No 4
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.99 E-value=12 Score=19.81 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=18.3
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Q psy4021 3 IKVLQFQNKKLAQRLEQKNRAEAELRSRIE 32 (65)
Q Consensus 3 i~vLQ~QNqKLsQ~Le~q~~~~~~Le~rie 32 (65)
|+.|+-+++.+.+..+.-+.....|+.+++
T Consensus 49 I~~L~~~~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555666666666666666666666654
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=32.89 E-value=26 Score=19.68 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccch
Q psy4021 17 LEQKNRAEAELRSRIEQLEKRQTQDD 42 (65)
Q Consensus 17 Le~q~~~~~~Le~rieqLe~rQa~dD 42 (65)
++.-+...+.|..+++++....+-+.
T Consensus 10 ~~~l~~~l~~l~~~i~~l~~~~~e~~ 35 (133)
T d1fxkc_ 10 LNIYQSQVELIQQQMEAVRATISELE 35 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444433333
No 6
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=28.98 E-value=28 Score=18.90 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhccccchhhhhhh
Q psy4021 23 AEAELRSRIEQLEKRQTQDDAVLNVV 48 (65)
Q Consensus 23 ~~~~Le~rieqLe~rQa~dD~tL~iV 48 (65)
.+.-+.+.+.-|++.+++-|..|.+.
T Consensus 6 vE~il~eli~vLeKh~Ap~DLSLMvL 31 (62)
T d2otaa1 6 VEKIIQDLLDVLVKEEVTPDLALMCL 31 (62)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcchHHHHH
Confidence 35567788999999999999998654
No 7
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840 {Haemophilus influenzae [TaxId: 727]}
Probab=26.39 E-value=32 Score=19.14 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhccccchhhhhhh
Q psy4021 24 EAELRSRIEQLEKRQTQDDAVLNVV 48 (65)
Q Consensus 24 ~~~Le~rieqLe~rQa~dD~tL~iV 48 (65)
+.-|.+-+.-|++.+|+-|..|.++
T Consensus 13 E~il~el~~vLeKh~Ap~DLSLMvL 37 (72)
T d2juza1 13 SAIVNDMIAVLEKHKAPVDLSLIAL 37 (72)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcchHHHHH
Confidence 4456788999999999999998654
No 8
>d2jpqa1 a.284.1.1 (A:1-75) Hypothetical protein VP2129 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=25.00 E-value=35 Score=19.13 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhccccchhhhhhh
Q psy4021 24 EAELRSRIEQLEKRQTQDDAVLNVV 48 (65)
Q Consensus 24 ~~~Le~rieqLe~rQa~dD~tL~iV 48 (65)
+.-|.+-+.-|++.+|+-|..|.++
T Consensus 13 E~il~el~~vLeKh~Ap~DLSLMvL 37 (75)
T d2jpqa1 13 EKILAEVALVLEKHAASPELTLMIA 37 (75)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcchHHHHH
Confidence 4456778999999999999998764
No 9
>d2qtia1 a.284.1.1 (A:8-72) Uncharacterized protein SO2176 {Shewanella oneidensis [TaxId: 70863]}
Probab=24.81 E-value=33 Score=18.73 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhccccchhhhhhh
Q psy4021 23 AEAELRSRIEQLEKRQTQDDAVLNVV 48 (65)
Q Consensus 23 ~~~~Le~rieqLe~rQa~dD~tL~iV 48 (65)
.+.-+.+.+.-|++-+|+-|..|.+.
T Consensus 5 vE~il~el~~vLeKH~Ap~DLSLMvL 30 (65)
T d2qtia1 5 VESLIAEILVVLEKHKAPTDLSLMAL 30 (65)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 45567888999999999999998654
No 10
>d2jrxa1 a.284.1.1 (A:1-75) Uncharacterized protein YejL {Escherichia coli [TaxId: 562]}
Probab=23.80 E-value=34 Score=19.15 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhccccchhhhhhh
Q psy4021 24 EAELRSRIEQLEKRQTQDDAVLNVV 48 (65)
Q Consensus 24 ~~~Le~rieqLe~rQa~dD~tL~iV 48 (65)
+.-|.+-+.-|++-+|+-|..|.++
T Consensus 13 E~il~el~~vLeKh~Ap~DLSLMvL 37 (75)
T d2jrxa1 13 EQLLAELLNVLEKHKAPTDLSLMVL 37 (75)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcchHHHHH
Confidence 4456778899999999999998664
Done!