RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4021
         (65 letters)



>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 25.3 bits (55), Expect = 0.31
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 3  IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLE 35
          I  +Q + +KL    +   +   +L+ ++EQL 
Sbjct: 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 83

 Score = 25.2 bits (55), Expect = 0.31
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 3  IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLE 35
          I+ ++ +N    Q ++   R  A L  ++  L 
Sbjct: 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81


>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component
           SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 129

 Score = 22.4 bits (48), Expect = 4.4
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 9   QNKKLAQRLEQKNR-AEAELRSRIEQLEKRQTQDDAVLNVVV 49
           Q +K+   L++K    E E    I++ EK     D+++   V
Sbjct: 89  QLRKI-DMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDFV 129


>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 79

 Score = 22.2 bits (47), Expect = 4.6
 Identities = 8/31 (25%), Positives = 19/31 (61%)

Query: 3  IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQ 33
          IK L+  ++K   +++Q  R +  L+ ++E+
Sbjct: 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79


>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
           KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 433

 Score = 21.9 bits (46), Expect = 8.0
 Identities = 3/14 (21%), Positives = 5/14 (35%)

Query: 15  QRLEQKNRAEAELR 28
             LE+  R   +  
Sbjct: 336 TELEETQRELRKEE 349


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.356 

Gapped
Lambda     K      H
   0.267   0.0443    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 205,031
Number of extensions: 6721
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 15
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)