Query psy4022
Match_columns 222
No_of_seqs 259 out of 2138
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 23:24:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0549|consensus 100.0 3.5E-37 7.6E-42 235.6 12.5 143 79-222 1-176 (188)
2 KOG0543|consensus 100.0 4.8E-28 1E-32 206.3 15.9 159 45-222 7-190 (397)
3 KOG0544|consensus 100.0 2.8E-28 6.2E-33 166.3 9.5 87 135-222 21-108 (108)
4 COG0545 FkpA FKBP-type peptidy 99.9 1.7E-27 3.7E-32 186.3 11.4 98 122-222 98-205 (205)
5 KOG0549|consensus 99.9 3.2E-26 6.9E-31 175.5 11.6 103 34-137 72-175 (188)
6 KOG0544|consensus 99.9 3.6E-25 7.8E-30 151.2 11.2 101 36-137 3-107 (108)
7 KOG0552|consensus 99.9 1.4E-24 3.1E-29 173.6 10.0 100 122-222 117-226 (226)
8 COG0545 FkpA FKBP-type peptidy 99.9 3E-24 6.4E-29 168.1 11.5 102 33-137 100-204 (205)
9 TIGR03516 ppisom_GldI peptidyl 99.9 4.6E-21 1E-25 150.5 12.9 106 31-137 66-175 (177)
10 TIGR03516 ppisom_GldI peptidyl 99.9 1.2E-21 2.6E-26 153.8 8.6 87 135-222 90-176 (177)
11 KOG0552|consensus 99.9 4E-21 8.6E-26 153.9 11.5 104 33-137 119-225 (226)
12 PF00254 FKBP_C: FKBP-type pep 99.8 2.8E-20 6E-25 131.8 11.5 90 44-134 2-93 (94)
13 PRK11570 peptidyl-prolyl cis-t 99.8 1.6E-20 3.5E-25 150.7 10.6 85 135-222 121-206 (206)
14 PRK11570 peptidyl-prolyl cis-t 99.8 6.9E-20 1.5E-24 147.1 12.9 101 34-137 102-205 (206)
15 PF00254 FKBP_C: FKBP-type pep 99.8 2.4E-20 5.2E-25 132.1 7.8 84 135-219 9-94 (94)
16 PRK15095 FKBP-type peptidyl-pr 99.8 3E-18 6.6E-23 132.0 12.6 84 45-137 3-87 (156)
17 COG1047 SlpA FKBP-type peptidy 99.8 7.4E-18 1.6E-22 129.9 11.8 140 45-222 1-141 (174)
18 PRK10737 FKBP-type peptidyl-pr 99.8 1.3E-17 2.7E-22 132.2 12.4 84 45-137 1-84 (196)
19 PRK10902 FKBP-type peptidyl-pr 99.7 1.9E-17 4.2E-22 137.7 13.3 103 32-138 144-249 (269)
20 PRK10902 FKBP-type peptidyl-pr 99.7 1.4E-17 3.1E-22 138.5 9.2 84 135-222 165-249 (269)
21 KOG0543|consensus 99.5 1.3E-13 2.8E-18 118.4 12.4 102 33-138 83-190 (397)
22 PRK15095 FKBP-type peptidyl-pr 99.5 1.7E-14 3.7E-19 111.2 5.6 66 135-201 9-75 (156)
23 COG1047 SlpA FKBP-type peptidy 99.3 4.3E-12 9.4E-17 98.0 6.1 67 135-202 7-74 (174)
24 PRK10737 FKBP-type peptidyl-pr 99.3 6.2E-12 1.3E-16 99.8 5.7 67 135-202 7-73 (196)
25 TIGR00115 tig trigger factor. 99.1 1.2E-10 2.6E-15 103.2 8.2 88 43-138 143-230 (408)
26 COG0544 Tig FKBP-type peptidyl 99.1 1.8E-10 3.9E-15 102.3 6.1 85 47-139 158-242 (441)
27 PRK01490 tig trigger factor; P 99.1 4.8E-10 1E-14 100.2 8.4 87 45-139 156-242 (435)
28 TIGR00115 tig trigger factor. 98.8 2.3E-08 4.9E-13 88.7 9.6 80 135-222 151-230 (408)
29 PRK01490 tig trigger factor; P 98.7 7.7E-08 1.7E-12 86.1 9.6 80 135-222 162-241 (435)
30 COG0544 Tig FKBP-type peptidyl 98.5 4.6E-07 1E-11 80.7 8.0 80 135-222 162-241 (441)
31 KOG0545|consensus 95.8 0.0038 8.3E-08 51.3 1.3 74 34-107 10-89 (329)
32 KOG0545|consensus 81.7 0.59 1.3E-05 38.8 0.7 58 135-192 31-90 (329)
33 PHA02122 hypothetical protein 52.7 31 0.00066 21.6 3.6 33 31-70 27-59 (65)
34 cd01090 Creatinase Creatine am 36.3 97 0.0021 25.0 5.4 54 42-102 72-134 (228)
35 PF09122 DUF1930: Domain of un 31.4 45 0.00098 21.5 2.0 22 173-194 36-57 (68)
36 cd01088 MetAP2 Methionine Amin 30.3 1E+02 0.0022 26.0 4.8 52 44-102 68-125 (291)
37 TIGR00495 crvDNA_42K 42K curve 30.1 1.1E+02 0.0025 27.1 5.2 51 45-102 99-163 (389)
38 PF01272 GreA_GreB: Transcript 29.0 65 0.0014 21.2 2.7 25 86-110 42-66 (77)
39 COG0024 Map Methionine aminope 28.1 1.6E+02 0.0035 24.6 5.4 56 40-102 80-145 (255)
40 PRK08671 methionine aminopepti 27.4 1.3E+02 0.0027 25.5 4.8 52 44-102 69-126 (291)
41 TIGR00501 met_pdase_II methion 27.2 1.3E+02 0.0028 25.5 4.8 52 44-102 72-129 (295)
42 cd01089 PA2G4-like Related to 27.1 1.9E+02 0.0042 23.2 5.7 53 43-102 79-145 (228)
43 PLN03158 methionine aminopepti 23.4 2.1E+02 0.0046 25.5 5.6 53 43-102 214-275 (396)
44 PTZ00053 methionine aminopepti 23.3 1.2E+02 0.0025 27.8 4.0 52 44-102 231-288 (470)
45 TIGR00500 met_pdase_I methioni 22.8 1.7E+02 0.0037 23.6 4.7 53 43-102 80-141 (247)
46 PRK12897 methionine aminopepti 21.8 2.6E+02 0.0056 22.7 5.6 54 43-103 81-143 (248)
47 COG4922 Uncharacterized protei 21.1 2.2E+02 0.0047 20.8 4.2 46 45-94 69-114 (129)
48 cd01086 MetAP1 Methionine Amin 20.1 2.9E+02 0.0062 22.1 5.5 53 43-102 72-133 (238)
No 1
>KOG0549|consensus
Probab=100.00 E-value=3.5e-37 Score=235.63 Aligned_cols=143 Identities=46% Similarity=0.886 Sum_probs=122.1
Q ss_pred EEcCCCcccchHHHHhcCCccCcEEEEecCCccccCCCCCCCC----C----------------CCCcceEEeEEe----
Q psy4022 79 FRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPA----I----------------PPNSTLVFDVEL---- 134 (222)
Q Consensus 79 ~~lg~~~~i~Gle~al~~m~~Ge~~~v~ip~~~ayg~~g~~~~----i----------------~~~~~lv~~vel---- 134 (222)
|.+|.+.+|+|+++++.+|+.|+++++.+||.++||..+.... + -+...+...+..
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~~p~~ 80 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRGDLNILVITILLVLLFRASAAEKWNPDEELQIGVLKKPEE 80 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccccccceEEEeeeeehhhhhhhhhcCCCCceeEEEEECCcc
Confidence 3578889999999999999999999999999999995543321 0 001112111111
Q ss_pred --------eeEEEEEEEEeccCCcccCCCC-CCCcEEEEeCCCeeeechhhhccCceeccEEEEEecCCCCCCCCCCCCC
Q psy4022 135 --------KNISVYYVGKLKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPA 205 (222)
Q Consensus 135 --------~~V~v~y~g~~~~~g~~fd~~~-~~~p~~~~lg~g~~i~g~~~~l~~m~~Ge~~~~~vp~~~~yg~~~~~~~ 205 (222)
|.+++||+|.+ .||+.||||+ +++|++|+||.|++|+|||+||.+||+||+|+++|||++|||++|.++.
T Consensus 81 C~~kak~GD~l~~HY~g~l-eDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~~~~ 159 (188)
T KOG0549|consen 81 CPEKAKKGDTLHVHYTGSL-EDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGAPPK 159 (188)
T ss_pred ccccccCCCEEEEEEEEEe-cCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCCCCC
Confidence 78999999988 8999999995 7889999999999999999999999999999999999999999999989
Q ss_pred CCCCCeEEEEEEEEeeC
Q psy4022 206 IPPNSTLVFDVELKNVN 222 (222)
Q Consensus 206 ip~~~~L~f~vel~~i~ 222 (222)
||++++|+|+|||++++
T Consensus 160 IP~~A~LiFdiELv~i~ 176 (188)
T KOG0549|consen 160 IPGDAVLIFDIELVKIE 176 (188)
T ss_pred CCCCeeEEEEEEEEEee
Confidence 99999999999999874
No 2
>KOG0543|consensus
Probab=99.96 E-value=4.8e-28 Score=206.33 Aligned_cols=159 Identities=45% Similarity=0.793 Sum_probs=142.8
Q ss_pred CCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCCcccchHHHHhcCCccCcEEEEecCCccccCCCCCCCCCCC
Q psy4022 45 LSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPAIPP 124 (222)
Q Consensus 45 ~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~~~i~Gle~al~~m~~Ge~~~v~ip~~~ayg~~g~~~~i~~ 124 (222)
..|..||.|.+||++++ .||+.||||..+.|+.|.+|.+.+|.||+.++..|+. |+.+.|+.+|+
T Consensus 7 ~~p~~g~~v~~hytg~l-~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~pp~ip~ 71 (397)
T KOG0543|consen 7 ETPMTGDKVEVHYTGTL-LDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGSPPKIPS 71 (397)
T ss_pred cCCCCCceeEEEEeEEe-cCCeecccccCCCceeeecCCCccccccccccccccc--------------cccCCCCCCCC
Confidence 55899999999999999 6999999998788999999999999999999999987 78888999999
Q ss_pred CcceEEeEEe-----------------------eeEEEEEEEEeccCCcccCCCCCCCcEEEEeCC-CeeeechhhhccC
Q psy4022 125 NSTLVFDVEL-----------------------KNISVYYVGKLKSNNQQFDSSTQGPGFKFRLGK-GEVIKGWDVGLNG 180 (222)
Q Consensus 125 ~~~lv~~vel-----------------------~~V~v~y~g~~~~~g~~fd~~~~~~p~~~~lg~-g~~i~g~~~~l~~ 180 (222)
+.++.|++++ ..|.+||.|.+ .++ +|+.+.- .|.|.+|+ ..+|.||+.||+.
T Consensus 72 ~a~l~fe~el~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~-~~~-~f~~~~~--~fe~~~Ge~~~vi~Gle~al~~ 147 (397)
T KOG0543|consen 72 NATLLFEVELLDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGEL-EDG-VFDQREL--RFEFGEGEDIDVIEGLEIALRM 147 (397)
T ss_pred CcceeeeecccCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEE-CCc-ceecccc--ceEEecCCccchhHHHHHHHHh
Confidence 9999998886 34899999999 455 7877732 38888887 5799999999999
Q ss_pred ceeccEEEEEecCCCCCC-CCCCCCCCCCCCeEEEEEEEEeeC
Q psy4022 181 MKVGGKRRITIPAHMAYG-NKGSPPAIPPNSTLVFDVELKNVN 222 (222)
Q Consensus 181 m~~Ge~~~~~vp~~~~yg-~~~~~~~ip~~~~L~f~vel~~i~ 222 (222)
|++||++.|+|+|.+||| ..+.++.||||++|.|+|+|+++.
T Consensus 148 M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~ 190 (397)
T KOG0543|consen 148 MKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFE 190 (397)
T ss_pred cCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeee
Confidence 999999999999999999 556677999999999999999863
No 3
>KOG0544|consensus
Probab=99.95 E-value=2.8e-28 Score=166.34 Aligned_cols=87 Identities=55% Similarity=1.000 Sum_probs=83.5
Q ss_pred eeEEEEEEEEeccCCcccCCC-CCCCcEEEEeCCCeeeechhhhccCceeccEEEEEecCCCCCCCCCCCCCCCCCCeEE
Q psy4022 135 KNISVYYVGKLKSNNQQFDSS-TQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPAIPPNSTLV 213 (222)
Q Consensus 135 ~~V~v~y~g~~~~~g~~fd~~-~~~~p~~~~lg~g~~i~g~~~~l~~m~~Ge~~~~~vp~~~~yg~~~~~~~ip~~~~L~ 213 (222)
+.|++||+|.+ .||+.|||| +++.||.|++|.|++|.||+|++..|.+||++++.|.|++|||.+|.+..||||++|+
T Consensus 21 qtvt~hYtg~L-~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~aYG~~G~p~~IppNatL~ 99 (108)
T KOG0544|consen 21 QTVTVHYTGTL-QDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDYAYGPRGHPGGIPPNATLV 99 (108)
T ss_pred CEEEEEEEeEe-cCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeeccccccCCCCCCCccCCCcEEE
Confidence 45899999999 799999999 6889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeC
Q psy4022 214 FDVELKNVN 222 (222)
Q Consensus 214 f~vel~~i~ 222 (222)
|+|||++|+
T Consensus 100 FdVEll~v~ 108 (108)
T KOG0544|consen 100 FDVELLKVN 108 (108)
T ss_pred EEEEEEecC
Confidence 999999985
No 4
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-27 Score=186.26 Aligned_cols=98 Identities=50% Similarity=0.867 Sum_probs=88.6
Q ss_pred CCCCcceEEeEEe---------eeEEEEEEEEeccCCcccCCC-CCCCcEEEEeCCCeeeechhhhccCceeccEEEEEe
Q psy4022 122 IPPNSTLVFDVEL---------KNISVYYVGKLKSNNQQFDSS-TQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 191 (222)
Q Consensus 122 i~~~~~lv~~vel---------~~V~v~y~g~~~~~g~~fd~~-~~~~p~~~~lg~g~~i~g~~~~l~~m~~Ge~~~~~v 191 (222)
..+++..+.++.. +.|.+||+|++ .||++|||| .+++|+.|.|+ ++|+||++||++|++|++++++|
T Consensus 98 ~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l-~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~I 174 (205)
T COG0545 98 TLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTL-IDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTI 174 (205)
T ss_pred ECCCCcEEEEEeccCCCCCCCCCEEEEEEEEec-CCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEe
Confidence 3455555555554 78999999999 799999999 69999999999 99999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCeEEEEEEEEeeC
Q psy4022 192 PAHMAYGNKGSPPAIPPNSTLVFDVELKNVN 222 (222)
Q Consensus 192 p~~~~yg~~~~~~~ip~~~~L~f~vel~~i~ 222 (222)
||++|||.+|.++.||||++|+|+|+|++|+
T Consensus 175 P~~laYG~~g~~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 175 PPELAYGERGVPGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred CchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence 9999999999887799999999999999985
No 5
>KOG0549|consensus
Probab=99.94 E-value=3.2e-26 Score=175.46 Aligned_cols=103 Identities=46% Similarity=0.841 Sum_probs=95.8
Q ss_pred CcEEEEeeecCCCCCCCCEEEEEEEEEEcCCCeEEeccc-CCCCeEEEcCCCcccchHHHHhcCCccCcEEEEecCCccc
Q psy4022 34 TGKIHHIFLLSLSYKKESNISVYYVGKLKSNNKQFDSST-QGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMA 112 (222)
Q Consensus 34 ~~~~~~~~~~g~~~~~gd~V~i~y~~~~~~dg~~~~st~-~~~p~~~~lg~~~~i~Gle~al~~m~~Ge~~~v~ip~~~a 112 (222)
-++++++..|..+++.||.+.+||++.+ .||+.||||+ +++|++|.||.+++|+||+++|.+|++||+|++.|||+++
T Consensus 72 I~v~~~p~~C~~kak~GD~l~~HY~g~l-eDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~Lg 150 (188)
T KOG0549|consen 72 IGVLKKPEECPEKAKKGDTLHVHYTGSL-EDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLG 150 (188)
T ss_pred EEEEECCccccccccCCCEEEEEEEEEe-cCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCcccc
Confidence 4677776679999999999999999988 7999999998 5569999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcceEEeEEeeeE
Q psy4022 113 YGNKGSPPAIPPNSTLVFDVELKNI 137 (222)
Q Consensus 113 yg~~g~~~~i~~~~~lv~~vel~~V 137 (222)
||++|.++.||+++.++|+|++..+
T Consensus 151 YG~~G~~~~IP~~A~LiFdiELv~i 175 (188)
T KOG0549|consen 151 YGERGAPPKIPGDAVLIFDIELVKI 175 (188)
T ss_pred CccCCCCCCCCCCeeEEEEEEEEEe
Confidence 9999999889999999999999554
No 6
>KOG0544|consensus
Probab=99.93 E-value=3.6e-25 Score=151.16 Aligned_cols=101 Identities=49% Similarity=0.837 Sum_probs=91.2
Q ss_pred EEEEeeecCCC---CCCCCEEEEEEEEEEcCCCeEEeccc-CCCCeEEEcCCCcccchHHHHhcCCccCcEEEEecCCcc
Q psy4022 36 KIHHIFLLSLS---YKKESNISVYYVGKLKSNNKQFDSST-QGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHM 111 (222)
Q Consensus 36 ~~~~~~~~g~~---~~~gd~V~i~y~~~~~~dg~~~~st~-~~~p~~~~lg~~~~i~Gle~al~~m~~Ge~~~v~ip~~~ 111 (222)
+-++++..|.. |++||+|++||++.+ .||+.|||+. ++.|+.|.+|.+++|.||++++..|.+||++++.|+|+.
T Consensus 3 v~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L-~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~ 81 (108)
T KOG0544|consen 3 VEKQVISPGDGRTFPKKGQTVTVHYTGTL-QDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY 81 (108)
T ss_pred ceeEEeeCCCCcccCCCCCEEEEEEEeEe-cCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence 33444444433 999999999999999 7999999996 678999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCcceEEeEEeeeE
Q psy4022 112 AYGNKGSPPAIPPNSTLVFDVELKNI 137 (222)
Q Consensus 112 ayg~~g~~~~i~~~~~lv~~vel~~V 137 (222)
|||..|.+..||||++|+|+|||..+
T Consensus 82 aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 82 AYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccCCCCCCCccCCCcEEEEEEEEEec
Confidence 99999999999999999999999654
No 7
>KOG0552|consensus
Probab=99.91 E-value=1.4e-24 Score=173.62 Aligned_cols=100 Identities=61% Similarity=1.032 Sum_probs=95.0
Q ss_pred CCCCcceEEeEEe---------eeEEEEEEEEeccCCcccCCCCCCCcEE-EEeCCCeeeechhhhccCceeccEEEEEe
Q psy4022 122 IPPNSTLVFDVEL---------KNISVYYVGKLKSNNQQFDSSTQGPGFK-FRLGKGEVIKGWDVGLNGMKVGGKRRITI 191 (222)
Q Consensus 122 i~~~~~lv~~vel---------~~V~v~y~g~~~~~g~~fd~~~~~~p~~-~~lg~g~~i~g~~~~l~~m~~Ge~~~~~v 191 (222)
..+++..+.++.+ +.|.++|.|++..+|++||++..+.|+. |.+|.++||+||+.++.+|++|++|+|+|
T Consensus 117 tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrviI 196 (226)
T KOG0552|consen 117 TLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRVII 196 (226)
T ss_pred ecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEEEe
Confidence 4688999999988 7799999999966999999999999999 99999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCeEEEEEEEEeeC
Q psy4022 192 PAHMAYGNKGSPPAIPPNSTLVFDVELKNVN 222 (222)
Q Consensus 192 p~~~~yg~~~~~~~ip~~~~L~f~vel~~i~ 222 (222)
||++|||.++.+ .||||++|+|+|||+.|+
T Consensus 197 Pp~lgYg~~g~~-~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 197 PPELGYGKKGVP-EIPPNSTLVFDVELLSVK 226 (226)
T ss_pred CccccccccCcC-cCCCCCcEEEEEEEEecC
Confidence 999999999999 899999999999999985
No 8
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3e-24 Score=168.06 Aligned_cols=102 Identities=49% Similarity=0.837 Sum_probs=91.5
Q ss_pred cCcEEEEeee--cCCCCCCCCEEEEEEEEEEcCCCeEEeccc-CCCCeEEEcCCCcccchHHHHhcCCccCcEEEEecCC
Q psy4022 33 ITGKIHHIFL--LSLSYKKESNISVYYVGKLKSNNKQFDSST-QGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPA 109 (222)
Q Consensus 33 ~~~~~~~~~~--~g~~~~~gd~V~i~y~~~~~~dg~~~~st~-~~~p~~~~lg~~~~i~Gle~al~~m~~Ge~~~v~ip~ 109 (222)
.+++.+++.. .|..|+.+|.|++||+|++ .||++|||++ +++|+.|.+| ++|+||.++|.+|++|++++++|||
T Consensus 100 ~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l-~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~IP~ 176 (205)
T COG0545 100 PSGLQYKVLKAGDGAAPKKGDTVTVHYTGTL-IDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTIPP 176 (205)
T ss_pred CCCcEEEEEeccCCCCCCCCCEEEEEEEEec-CCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEeCc
Confidence 3456666554 5566899999999999999 7999999995 7889999999 9999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCcceEEeEEeeeE
Q psy4022 110 HMAYGNKGSPPAIPPNSTLVFDVELKNI 137 (222)
Q Consensus 110 ~~ayg~~g~~~~i~~~~~lv~~vel~~V 137 (222)
++|||+.|.+..||||++|+|+|+|..|
T Consensus 177 ~laYG~~g~~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 177 ELAYGERGVPGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred hhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence 9999999987779999999999999654
No 9
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.86 E-value=4.6e-21 Score=150.46 Aligned_cols=106 Identities=22% Similarity=0.227 Sum_probs=93.9
Q ss_pred CCcCcEEEEee----ecCCCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCCcccchHHHHhcCCccCcEEEEe
Q psy4022 31 KSITGKIHHIF----LLSLSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106 (222)
Q Consensus 31 ~~~~~~~~~~~----~~g~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~~~i~Gle~al~~m~~Ge~~~v~ 106 (222)
.+..|..+.+. +.|..|+.||.|++||++++ .||++|++++...|+.|.+|.+++++||+++|.+|++||++++.
T Consensus 66 ~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~-~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~ 144 (177)
T TIGR03516 66 TSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRA-LDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETATFL 144 (177)
T ss_pred ECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEe-CCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEE
Confidence 34456555544 34566899999999999999 69999999987779999999999999999999999999999999
Q ss_pred cCCccccCCCCCCCCCCCCcceEEeEEeeeE
Q psy4022 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137 (222)
Q Consensus 107 ip~~~ayg~~g~~~~i~~~~~lv~~vel~~V 137 (222)
|||++|||..|.+..||||++++|+|++..+
T Consensus 145 iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i 175 (177)
T TIGR03516 145 FPSHKAYGYYGDQNKIGPNLPIISTVTLLNI 175 (177)
T ss_pred ECHHHcCCCCCCCCCcCcCCcEEEEEEEEEe
Confidence 9999999999988889999999999999665
No 10
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.86 E-value=1.2e-21 Score=153.78 Aligned_cols=87 Identities=23% Similarity=0.347 Sum_probs=82.2
Q ss_pred eeEEEEEEEEeccCCcccCCCCCCCcEEEEeCCCeeeechhhhccCceeccEEEEEecCCCCCCCCCCCCCCCCCCeEEE
Q psy4022 135 KNISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPAIPPNSTLVF 214 (222)
Q Consensus 135 ~~V~v~y~g~~~~~g~~fd~~~~~~p~~~~lg~g~~i~g~~~~l~~m~~Ge~~~~~vp~~~~yg~~~~~~~ip~~~~L~f 214 (222)
+.|.+||.+++ .||.+|++++...|+.|.+|.+++++||++||.+|++||+++|++||++|||+++.+..||||++|+|
T Consensus 90 d~V~v~Y~~~~-~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~iP~~~AYG~~g~~~~Ippns~L~f 168 (177)
T TIGR03516 90 DLVTFEYDIRA-LDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLFPSHKAYGYYGDQNKIGPNLPIIS 168 (177)
T ss_pred CEEEEEEEEEe-CCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEECHHHcCCCCCCCCCcCcCCcEEE
Confidence 56899999999 69999999977779999999999999999999999999999999999999999998878999999999
Q ss_pred EEEEEeeC
Q psy4022 215 DVELKNVN 222 (222)
Q Consensus 215 ~vel~~i~ 222 (222)
+|+|++|+
T Consensus 169 ~IeL~~i~ 176 (177)
T TIGR03516 169 TVTLLNIK 176 (177)
T ss_pred EEEEEEec
Confidence 99999985
No 11
>KOG0552|consensus
Probab=99.86 E-value=4e-21 Score=153.88 Aligned_cols=104 Identities=60% Similarity=0.948 Sum_probs=93.8
Q ss_pred cCcEEEEeee--cCCCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeE-EEcCCCcccchHHHHhcCCccCcEEEEecCC
Q psy4022 33 ITGKIHHIFL--LSLSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFK-FRLGKGEVIKGWDVGLNGMKVGGKRRITIPA 109 (222)
Q Consensus 33 ~~~~~~~~~~--~g~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~-~~lg~~~~i~Gle~al~~m~~Ge~~~v~ip~ 109 (222)
-.|+.++... .|..+..|++|.+||.|++..+|.+|+++..+.|+. |.+|.+++|+||+.++.+|++|.+|+|+|||
T Consensus 119 ~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrviIPp 198 (226)
T KOG0552|consen 119 PGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRVIIPP 198 (226)
T ss_pred CCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEEEeCc
Confidence 3566666444 456689999999999999955999999999889999 9999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCcceEEeEEeeeE
Q psy4022 110 HMAYGNKGSPPAIPPNSTLVFDVELKNI 137 (222)
Q Consensus 110 ~~ayg~~g~~~~i~~~~~lv~~vel~~V 137 (222)
++|||..+.+ .||||++|+|+|+|..|
T Consensus 199 ~lgYg~~g~~-~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 199 ELGYGKKGVP-EIPPNSTLVFDVELLSV 225 (226)
T ss_pred cccccccCcC-cCCCCCcEEEEEEEEec
Confidence 9999999987 89999999999999654
No 12
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.84 E-value=2.8e-20 Score=131.81 Aligned_cols=90 Identities=51% Similarity=0.916 Sum_probs=83.6
Q ss_pred CCCCCCCCEEEEEEEEEEcCCCeEEeccc-CCCCeEEEcCCCcccchHHHHhcCCccCcEEEEecCCccccCCCCC-CCC
Q psy4022 44 SLSYKKESNISVYYVGKLKSNNKQFDSST-QGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGS-PPA 121 (222)
Q Consensus 44 g~~~~~gd~V~i~y~~~~~~dg~~~~st~-~~~p~~~~lg~~~~i~Gle~al~~m~~Ge~~~v~ip~~~ayg~~g~-~~~ 121 (222)
.++|+.||.|++||++++ .+|+.|++++ ...|+.|.+|.+++++||++||.+|++|+++++.||++++||..+. +..
T Consensus 2 ~~~~~~gd~V~i~y~~~~-~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ 80 (94)
T PF00254_consen 2 PRTPKEGDTVTIHYTGRL-EDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK 80 (94)
T ss_dssp SSSBSTTSEEEEEEEEEE-TTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred CccCCCCCEEEEEEEEEE-CCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence 456999999999999999 4999999995 5679999999999999999999999999999999999999999887 446
Q ss_pred CCCCcceEEeEEe
Q psy4022 122 IPPNSTLVFDVEL 134 (222)
Q Consensus 122 i~~~~~lv~~vel 134 (222)
||++++++|+|+|
T Consensus 81 ip~~~~l~f~Iel 93 (94)
T PF00254_consen 81 IPPNSTLVFEIEL 93 (94)
T ss_dssp BTTTSEEEEEEEE
T ss_pred cCCCCeEEEEEEE
Confidence 9999999999987
No 13
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.84 E-value=1.6e-20 Score=150.75 Aligned_cols=85 Identities=45% Similarity=0.737 Sum_probs=80.1
Q ss_pred eeEEEEEEEEeccCCcccCCCC-CCCcEEEEeCCCeeeechhhhccCceeccEEEEEecCCCCCCCCCCCCCCCCCCeEE
Q psy4022 135 KNISVYYVGKLKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPAIPPNSTLV 213 (222)
Q Consensus 135 ~~V~v~y~g~~~~~g~~fd~~~-~~~p~~~~lg~g~~i~g~~~~l~~m~~Ge~~~~~vp~~~~yg~~~~~~~ip~~~~L~ 213 (222)
+.|.+||.+++ .||++||+++ +++|+.|.++ ++|+||++||.+|++|++++|+|||++|||+++.++.|||+++|+
T Consensus 121 d~V~v~Y~g~l-~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~g~~~~Ipp~s~Li 197 (206)
T PRK11570 121 DRVRVHYTGKL-IDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLV 197 (206)
T ss_pred CEEEEEEEEEE-CCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEECHHHcCCCCCCCCCcCCCCeEE
Confidence 67999999999 5999999995 6789999996 799999999999999999999999999999999888899999999
Q ss_pred EEEEEEeeC
Q psy4022 214 FDVELKNVN 222 (222)
Q Consensus 214 f~vel~~i~ 222 (222)
|+|||++|+
T Consensus 198 f~veLl~i~ 206 (206)
T PRK11570 198 FEVELLEIL 206 (206)
T ss_pred EEEEEEEEC
Confidence 999999985
No 14
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.83 E-value=6.9e-20 Score=147.14 Aligned_cols=101 Identities=40% Similarity=0.645 Sum_probs=90.0
Q ss_pred CcEEEEeeec--CCCCCCCCEEEEEEEEEEcCCCeEEeccc-CCCCeEEEcCCCcccchHHHHhcCCccCcEEEEecCCc
Q psy4022 34 TGKIHHIFLL--SLSYKKESNISVYYVGKLKSNNKQFDSST-QGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAH 110 (222)
Q Consensus 34 ~~~~~~~~~~--g~~~~~gd~V~i~y~~~~~~dg~~~~st~-~~~p~~~~lg~~~~i~Gle~al~~m~~Ge~~~v~ip~~ 110 (222)
+++.+++... |..|+.+|.|.+||++++ .||++|+|++ +++|+.|.++ .+++||+++|.+|++|+++.++||++
T Consensus 102 sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l-~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~IP~~ 178 (206)
T PRK11570 102 SGLQFRVLTQGEGAIPARTDRVRVHYTGKL-IDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTIPHE 178 (206)
T ss_pred CCcEEEEEeCCCCCCCCCCCEEEEEEEEEE-CCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEECHH
Confidence 4666665544 456899999999999999 6999999997 5679999997 79999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCcceEEeEEeeeE
Q psy4022 111 MAYGNKGSPPAIPPNSTLVFDVELKNI 137 (222)
Q Consensus 111 ~ayg~~g~~~~i~~~~~lv~~vel~~V 137 (222)
++||+.+.++.|||+++++|+|++..|
T Consensus 179 lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 179 LAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred HcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 999999998899999999999999665
No 15
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.82 E-value=2.4e-20 Score=132.11 Aligned_cols=84 Identities=52% Similarity=0.977 Sum_probs=78.4
Q ss_pred eeEEEEEEEEeccCCcccCCC-CCCCcEEEEeCCCeeeechhhhccCceeccEEEEEecCCCCCCCCCC-CCCCCCCCeE
Q psy4022 135 KNISVYYVGKLKSNNQQFDSS-TQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGS-PPAIPPNSTL 212 (222)
Q Consensus 135 ~~V~v~y~g~~~~~g~~fd~~-~~~~p~~~~lg~g~~i~g~~~~l~~m~~Ge~~~~~vp~~~~yg~~~~-~~~ip~~~~L 212 (222)
+.|.+||.+++. +|+.|+++ ..+.|+.|.+|.+++++||++||.+|++||+++|.|||++|||+.+. +..||++++|
T Consensus 9 d~V~i~y~~~~~-~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip~~~~l 87 (94)
T PF00254_consen 9 DTVTIHYTGRLE-DGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPKIPPNSTL 87 (94)
T ss_dssp SEEEEEEEEEET-TSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTBTTTSEE
T ss_pred CEEEEEEEEEEC-CCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCCcCCCCeE
Confidence 468999999995 99999999 57889999999999999999999999999999999999999999988 4479999999
Q ss_pred EEEEEEE
Q psy4022 213 VFDVELK 219 (222)
Q Consensus 213 ~f~vel~ 219 (222)
+|+|+|+
T Consensus 88 ~f~Iell 94 (94)
T PF00254_consen 88 VFEIELL 94 (94)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 9999996
No 16
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.78 E-value=3e-18 Score=132.02 Aligned_cols=84 Identities=26% Similarity=0.438 Sum_probs=74.8
Q ss_pred CCCCCCCEEEEEEEEEEcCCCeEEecccC-CCCeEEEcCCCcccchHHHHhcCCccCcEEEEecCCccccCCCCCCCCCC
Q psy4022 45 LSYKKESNISVYYVGKLKSNNKQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPAIP 123 (222)
Q Consensus 45 ~~~~~gd~V~i~y~~~~~~dg~~~~st~~-~~p~~~~lg~~~~i~Gle~al~~m~~Ge~~~v~ip~~~ayg~~g~~~~i~ 123 (222)
+.++.||.|++||++++ .||++|+||+. ++|+.|.+|.+++++||++||.+|++|+++.+.|||++|||+.
T Consensus 3 m~i~~~~~V~v~Y~~~~-~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~------- 74 (156)
T PRK15095 3 ESVQSNSAVLVHFTLKL-DDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP------- 74 (156)
T ss_pred cccCCCCEEEEEEEEEe-CCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC-------
Confidence 57899999999999999 79999999984 6899999999999999999999999999999999999999965
Q ss_pred CCcceEEeEEeeeE
Q psy4022 124 PNSTLVFDVELKNI 137 (222)
Q Consensus 124 ~~~~lv~~vel~~V 137 (222)
+..++..+....+
T Consensus 75 -d~~~v~~vp~~~f 87 (156)
T PRK15095 75 -SPDLIQYFSRRDF 87 (156)
T ss_pred -ChHHEEEecHHHC
Confidence 5666676665443
No 17
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=7.4e-18 Score=129.85 Aligned_cols=140 Identities=22% Similarity=0.342 Sum_probs=100.3
Q ss_pred CCCCCCCEEEEEEEEEEcCCCeEEecccC-CCCeEEEcCCCcccchHHHHhcCCccCcEEEEecCCccccCCCCCCCCCC
Q psy4022 45 LSYKKESNISVYYVGKLKSNNKQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPAIP 123 (222)
Q Consensus 45 ~~~~~gd~V~i~y~~~~~~dg~~~~st~~-~~p~~~~lg~~~~i~Gle~al~~m~~Ge~~~v~ip~~~ayg~~g~~~~i~ 123 (222)
+++++||.|+++|++++ .||++||+|.. ..|+.|.+|.+++++||++||.+|.+|++.++.|||+.|||++
T Consensus 1 m~i~k~~~V~i~Y~~~~-~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~------- 72 (174)
T COG1047 1 MKIEKGDVVSLHYTLKV-EDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY------- 72 (174)
T ss_pred CcccCCCEEEEEEEEEe-cCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCC-------
Confidence 46789999999999999 68999999987 7899999999999999999999999999999999999999976
Q ss_pred CCcceEEeEEeeeEEEEEEEEeccCCcccCCCCCCCcEEEEeCCCeeeechhhhccCceeccEEEEEecCCCCCCCCCCC
Q psy4022 124 PNSTLVFDVELKNISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSP 203 (222)
Q Consensus 124 ~~~~lv~~vel~~V~v~y~g~~~~~g~~fd~~~~~~p~~~~lg~g~~i~g~~~~l~~m~~Ge~~~~~vp~~~~yg~~~~~ 203 (222)
+..++..+.++.+.-. +.+ .-|..|..+....+....+ .--.|+++++-....||
T Consensus 73 -~~~lvq~vp~~~F~~~--~~~-~vGm~~~~~~~~~~~~~~V--------------~~V~~~~V~VDfNHpLA------- 127 (174)
T COG1047 73 -DPDLVQRVPRDEFQGV--GEL-EVGMEVEAEGGDGEIPGVV--------------TEVSGDRVTVDFNHPLA------- 127 (174)
T ss_pred -ChHHeEEecHHHhCcC--CCC-CCCcEEEEcCCCceeeEEE--------------EEEcCCEEEEeCCCcCC-------
Confidence 5667776666444311 001 1122222221112222221 11134566666666654
Q ss_pred CCCCCCCeEEEEEEEEeeC
Q psy4022 204 PAIPPNSTLVFDVELKNVN 222 (222)
Q Consensus 204 ~~ip~~~~L~f~vel~~i~ 222 (222)
|.+|.|+|++++++
T Consensus 128 -----GktL~feveVv~v~ 141 (174)
T COG1047 128 -----GKTLHFEVEVVEVR 141 (174)
T ss_pred -----CCeEEEEEEEEEEe
Confidence 57899999999873
No 18
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.76 E-value=1.3e-17 Score=132.18 Aligned_cols=84 Identities=25% Similarity=0.394 Sum_probs=75.8
Q ss_pred CCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCCcccchHHHHhcCCccCcEEEEecCCccccCCCCCCCCCCC
Q psy4022 45 LSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPAIPP 124 (222)
Q Consensus 45 ~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~~~i~Gle~al~~m~~Ge~~~v~ip~~~ayg~~g~~~~i~~ 124 (222)
++++++++|+++|++++ .||+++++|....|+.|.+|.++++||||+||.+|++|++++|.|||+.|||++
T Consensus 1 MkI~~~~vV~l~Y~l~~-~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~-------- 71 (196)
T PRK10737 1 MKVAKDLVVSLAYQVRT-EDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY-------- 71 (196)
T ss_pred CccCCCCEEEEEEEEEe-CCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCC--------
Confidence 46789999999999999 799999999878899999999999999999999999999999999999999976
Q ss_pred CcceEEeEEeeeE
Q psy4022 125 NSTLVFDVELKNI 137 (222)
Q Consensus 125 ~~~lv~~vel~~V 137 (222)
+..++..+.+..+
T Consensus 72 d~~lV~~vpr~~F 84 (196)
T PRK10737 72 DENLVQRVPKDVF 84 (196)
T ss_pred ChHHEEEecHHHC
Confidence 5667777766544
No 19
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.75 E-value=1.9e-17 Score=137.70 Aligned_cols=103 Identities=43% Similarity=0.732 Sum_probs=90.2
Q ss_pred CcCcEEEEeeecC--CCCCCCCEEEEEEEEEEcCCCeEEeccc-CCCCeEEEcCCCcccchHHHHhcCCccCcEEEEecC
Q psy4022 32 SITGKIHHIFLLS--LSYKKESNISVYYVGKLKSNNKQFDSST-QGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIP 108 (222)
Q Consensus 32 ~~~~~~~~~~~~g--~~~~~gd~V~i~y~~~~~~dg~~~~st~-~~~p~~~~lg~~~~i~Gle~al~~m~~Ge~~~v~ip 108 (222)
..+|+.+++...| ..|+.||.|.+||++++ .||++|++++ ++.|+.|.++ .++|||+++|.+|++|+++.++||
T Consensus 144 t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l-~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~IP 220 (269)
T PRK10902 144 TSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTL-IDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIP 220 (269)
T ss_pred CCCccEEEEEeCCCCCCCCCCCEEEEEEEEEe-CCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEEEC
Confidence 4557777777655 45889999999999998 6999999997 4578888886 799999999999999999999999
Q ss_pred CccccCCCCCCCCCCCCcceEEeEEeeeEE
Q psy4022 109 AHMAYGNKGSPPAIPPNSTLVFDVELKNIS 138 (222)
Q Consensus 109 ~~~ayg~~g~~~~i~~~~~lv~~vel~~V~ 138 (222)
+.++||..+.+ .|||++.++|+|++..|.
T Consensus 221 ~~laYG~~g~~-gIppns~LvfeVeLl~V~ 249 (269)
T PRK10902 221 PELAYGKAGVP-GIPANSTLVFDVELLDVK 249 (269)
T ss_pred chhhCCCCCCC-CCCCCCcEEEEEEEEEec
Confidence 99999999875 699999999999997664
No 20
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.73 E-value=1.4e-17 Score=138.52 Aligned_cols=84 Identities=49% Similarity=0.887 Sum_probs=77.9
Q ss_pred eeEEEEEEEEeccCCcccCCCC-CCCcEEEEeCCCeeeechhhhccCceeccEEEEEecCCCCCCCCCCCCCCCCCCeEE
Q psy4022 135 KNISVYYVGKLKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPAIPPNSTLV 213 (222)
Q Consensus 135 ~~V~v~y~g~~~~~g~~fd~~~-~~~p~~~~lg~g~~i~g~~~~l~~m~~Ge~~~~~vp~~~~yg~~~~~~~ip~~~~L~ 213 (222)
+.|.+||.+++ .||++|++++ ++.|+.|.++ ++|+||+++|.+|++|++++|+||++++||+++.+ .||||++|+
T Consensus 165 D~V~V~Y~g~l-~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~~-gIppns~Lv 240 (269)
T PRK10902 165 DTVVVNYKGTL-IDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP-GIPANSTLV 240 (269)
T ss_pred CEEEEEEEEEe-CCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEEECchhhCCCCCCC-CCCCCCcEE
Confidence 77999999998 6999999984 6789999886 79999999999999999999999999999999876 799999999
Q ss_pred EEEEEEeeC
Q psy4022 214 FDVELKNVN 222 (222)
Q Consensus 214 f~vel~~i~ 222 (222)
|+|+|++|+
T Consensus 241 feVeLl~V~ 249 (269)
T PRK10902 241 FDVELLDVK 249 (269)
T ss_pred EEEEEEEec
Confidence 999999874
No 21
>KOG0543|consensus
Probab=99.53 E-value=1.3e-13 Score=118.38 Aligned_cols=102 Identities=36% Similarity=0.575 Sum_probs=88.2
Q ss_pred cCcEEEEeeecCCC----CCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCC-CcccchHHHHhcCCccCcEEEEec
Q psy4022 33 ITGKIHHIFLLSLS----YKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGK-GEVIKGWDVGLNGMKVGGKRRITI 107 (222)
Q Consensus 33 ~~~~~~~~~~~g~~----~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~-~~~i~Gle~al~~m~~Ge~~~v~i 107 (222)
+.+++++++..|.+ |..|.+|.+||.|++ .|+ +|+++ ...+.|..|. ..++.||+.||..|++||.+.|+|
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~-~~~-~f~~~--~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i 158 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGEL-EDG-VFDQR--ELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTI 158 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEE-CCc-ceecc--ccceEEecCCccchhHHHHHHHHhcCccceEEEEe
Confidence 77899998887766 899999999999999 466 67765 3357788887 479999999999999999999999
Q ss_pred CCccccC-CCCCCCCCCCCcceEEeEEeeeEE
Q psy4022 108 PAHMAYG-NKGSPPAIPPNSTLVFDVELKNIS 138 (222)
Q Consensus 108 p~~~ayg-~~g~~~~i~~~~~lv~~vel~~V~ 138 (222)
+|.++|| ..++++.|||++++.|+|+|..+.
T Consensus 159 ~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~ 190 (397)
T KOG0543|consen 159 DPKYAYGEEGGEPPLIPPNATLLYEVELLDFE 190 (397)
T ss_pred CcccccCCCCCCCCCCCCCceEEEEEEEEeee
Confidence 9999999 566788999999999999995554
No 22
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.51 E-value=1.7e-14 Score=111.16 Aligned_cols=66 Identities=29% Similarity=0.509 Sum_probs=61.8
Q ss_pred eeEEEEEEEEeccCCcccCCCC-CCCcEEEEeCCCeeeechhhhccCceeccEEEEEecCCCCCCCCC
Q psy4022 135 KNISVYYVGKLKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKG 201 (222)
Q Consensus 135 ~~V~v~y~g~~~~~g~~fd~~~-~~~p~~~~lg~g~~i~g~~~~l~~m~~Ge~~~~~vp~~~~yg~~~ 201 (222)
+.|.+||++++ .||++||+++ .++|+.|.+|.+++++||++||.+|++|+++.|.|||+.|||++.
T Consensus 9 ~~V~v~Y~~~~-~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 9 SAVLVHFTLKL-DDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred CEEEEEEEEEe-CCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 45899999999 7899999996 479999999999999999999999999999999999999999875
No 23
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.3e-12 Score=98.02 Aligned_cols=67 Identities=25% Similarity=0.461 Sum_probs=62.5
Q ss_pred eeEEEEEEEEeccCCcccCCCCC-CCcEEEEeCCCeeeechhhhccCceeccEEEEEecCCCCCCCCCC
Q psy4022 135 KNISVYYVGKLKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGS 202 (222)
Q Consensus 135 ~~V~v~y~g~~~~~g~~fd~~~~-~~p~~~~lg~g~~i~g~~~~l~~m~~Ge~~~~~vp~~~~yg~~~~ 202 (222)
+-|.++|++++ .||++||+|.. .+|+.|.+|.|++++||++||.+|.+|++..|.|||+-|||.+..
T Consensus 7 ~~V~i~Y~~~~-~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~ 74 (174)
T COG1047 7 DVVSLHYTLKV-EDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDP 74 (174)
T ss_pred CEEEEEEEEEe-cCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCCh
Confidence 34889999999 57999999976 899999999999999999999999999999999999999998854
No 24
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.27 E-value=6.2e-12 Score=99.81 Aligned_cols=67 Identities=25% Similarity=0.423 Sum_probs=62.7
Q ss_pred eeEEEEEEEEeccCCcccCCCCCCCcEEEEeCCCeeeechhhhccCceeccEEEEEecCCCCCCCCCC
Q psy4022 135 KNISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGS 202 (222)
Q Consensus 135 ~~V~v~y~g~~~~~g~~fd~~~~~~p~~~~lg~g~~i~g~~~~l~~m~~Ge~~~~~vp~~~~yg~~~~ 202 (222)
+.|.++|++++ .+|.+|+++...+|+.|.+|.+++++||++||.+|++|+++.|.|||+.|||++..
T Consensus 7 ~vV~l~Y~l~~-~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~ 73 (196)
T PRK10737 7 LVVSLAYQVRT-EDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE 73 (196)
T ss_pred CEEEEEEEEEe-CCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence 35899999999 78999999988899999999999999999999999999999999999999998753
No 25
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.14 E-value=1.2e-10 Score=103.25 Aligned_cols=88 Identities=22% Similarity=0.456 Sum_probs=77.6
Q ss_pred cCCCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCCcccchHHHHhcCCccCcEEEEecCCccccCCCCCCCCC
Q psy4022 43 LSLSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPAI 122 (222)
Q Consensus 43 ~g~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~~~i~Gle~al~~m~~Ge~~~v~ip~~~ayg~~g~~~~i 122 (222)
.+++++.||.|+++|+++. +|..++++. ..++.|.+|.+.+++||+++|.||++|+++.+.++++..|+...
T Consensus 143 ~~~~~~~gD~V~v~~~~~~--dg~~~~~~~-~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~----- 214 (408)
T TIGR00115 143 ERRAAEKGDRVTIDFEGFI--DGEAFEGGK-AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEE----- 214 (408)
T ss_pred cccccCCCCEEEEEEEEEE--CCEECcCCC-CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCccc-----
Confidence 3457899999999999987 899998874 57899999999999999999999999999999999999998765
Q ss_pred CCCcceEEeEEeeeEE
Q psy4022 123 PPNSTLVFDVELKNIS 138 (222)
Q Consensus 123 ~~~~~lv~~vel~~V~ 138 (222)
.++....|+|++..|.
T Consensus 215 ~~gk~~~f~v~i~~I~ 230 (408)
T TIGR00115 215 LAGKEATFKVTVKEVK 230 (408)
T ss_pred CCCCeEEEEEEEEEec
Confidence 4588999999987664
No 26
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.8e-10 Score=102.31 Aligned_cols=85 Identities=21% Similarity=0.483 Sum_probs=76.2
Q ss_pred CCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCCcccchHHHHhcCCccCcEEEEecCCccccCCCCCCCCCCCCc
Q psy4022 47 YKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPAIPPNS 126 (222)
Q Consensus 47 ~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~~~i~Gle~al~~m~~Ge~~~v~ip~~~ayg~~g~~~~i~~~~ 126 (222)
++.||+|+|+|.|+. ||..|.+.. .+.+.+.+|++++||||+.+|.||++|+++.+.+.....|.... .++.
T Consensus 158 a~~gD~v~IDf~g~i--Dg~~fegg~-ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~-----LaGK 229 (441)
T COG0544 158 AENGDRVTIDFEGSV--DGEEFEGGK-AENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEE-----LAGK 229 (441)
T ss_pred cccCCEEEEEEEEEE--cCeeccCcc-ccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhH-----hCCC
Confidence 999999999999987 999999884 46799999999999999999999999999999998888888755 4588
Q ss_pred ceEEeEEeeeEEE
Q psy4022 127 TLVFDVELKNISV 139 (222)
Q Consensus 127 ~lv~~vel~~V~v 139 (222)
...|.|++..|.-
T Consensus 230 ~a~F~V~vkeVk~ 242 (441)
T COG0544 230 EATFKVKVKEVKK 242 (441)
T ss_pred ceEEEEEEEEEee
Confidence 9999999977764
No 27
>PRK01490 tig trigger factor; Provisional
Probab=99.06 E-value=4.8e-10 Score=100.20 Aligned_cols=87 Identities=22% Similarity=0.489 Sum_probs=76.9
Q ss_pred CCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCCcccchHHHHhcCCccCcEEEEecCCccccCCCCCCCCCCC
Q psy4022 45 LSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPAIPP 124 (222)
Q Consensus 45 ~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~~~i~Gle~al~~m~~Ge~~~v~ip~~~ayg~~g~~~~i~~ 124 (222)
++++.||.|+++|+++. +|..|+++. ..++.|.+|.+++++||+++|.||++|+++.+.++++..|+... .+
T Consensus 156 ~~~~~gD~V~vd~~~~~--~g~~~~~~~-~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~-----la 227 (435)
T PRK01490 156 RPAENGDRVTIDFVGSI--DGEEFEGGK-AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAED-----LA 227 (435)
T ss_pred ccCCCCCEEEEEEEEEE--CCEECcCCC-CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccccc-----CC
Confidence 66899999999999998 899998874 46899999999999999999999999999999999999997654 45
Q ss_pred CcceEEeEEeeeEEE
Q psy4022 125 NSTLVFDVELKNISV 139 (222)
Q Consensus 125 ~~~lv~~vel~~V~v 139 (222)
+....|.|++..|.-
T Consensus 228 gk~~~f~v~v~~V~~ 242 (435)
T PRK01490 228 GKEATFKVTVKEVKE 242 (435)
T ss_pred CCeEEEEEEEEEecc
Confidence 888999999877653
No 28
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.81 E-value=2.3e-08 Score=88.73 Aligned_cols=80 Identities=24% Similarity=0.526 Sum_probs=70.3
Q ss_pred eeEEEEEEEEeccCCcccCCCCCCCcEEEEeCCCeeeechhhhccCceeccEEEEEecCCCCCCCCCCCCCCCCCCeEEE
Q psy4022 135 KNISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPAIPPNSTLVF 214 (222)
Q Consensus 135 ~~V~v~y~g~~~~~g~~fd~~~~~~p~~~~lg~g~~i~g~~~~l~~m~~Ge~~~~~vp~~~~yg~~~~~~~ip~~~~L~f 214 (222)
+.|.++|.+.. +|..|+++ ...++.|.+|.+.+++||+++|.||++|+++.|.+|++..|+..... |.++.|
T Consensus 151 D~V~v~~~~~~--dg~~~~~~-~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~~-----gk~~~f 222 (408)
T TIGR00115 151 DRVTIDFEGFI--DGEAFEGG-KAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEELA-----GKEATF 222 (408)
T ss_pred CEEEEEEEEEE--CCEECcCC-CCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccCC-----CCeEEE
Confidence 45888999876 88888877 45789999999999999999999999999999999999899876654 689999
Q ss_pred EEEEEeeC
Q psy4022 215 DVELKNVN 222 (222)
Q Consensus 215 ~vel~~i~ 222 (222)
+|+|.+|+
T Consensus 223 ~v~i~~I~ 230 (408)
T TIGR00115 223 KVTVKEVK 230 (408)
T ss_pred EEEEEEec
Confidence 99999985
No 29
>PRK01490 tig trigger factor; Provisional
Probab=98.71 E-value=7.7e-08 Score=86.07 Aligned_cols=80 Identities=25% Similarity=0.564 Sum_probs=69.7
Q ss_pred eeEEEEEEEEeccCCcccCCCCCCCcEEEEeCCCeeeechhhhccCceeccEEEEEecCCCCCCCCCCCCCCCCCCeEEE
Q psy4022 135 KNISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPAIPPNSTLVF 214 (222)
Q Consensus 135 ~~V~v~y~g~~~~~g~~fd~~~~~~p~~~~lg~g~~i~g~~~~l~~m~~Ge~~~~~vp~~~~yg~~~~~~~ip~~~~L~f 214 (222)
+.|.++|.+.. +|..|+++ ...++.|.+|.+++++||+++|.||++|+++.+.+++...|+..... |.+..|
T Consensus 162 D~V~vd~~~~~--~g~~~~~~-~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~la-----gk~~~f 233 (435)
T PRK01490 162 DRVTIDFVGSI--DGEEFEGG-KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDLA-----GKEATF 233 (435)
T ss_pred CEEEEEEEEEE--CCEECcCC-CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccCC-----CCeEEE
Confidence 45888999998 78888876 45689999999999999999999999999999999988888776554 588999
Q ss_pred EEEEEeeC
Q psy4022 215 DVELKNVN 222 (222)
Q Consensus 215 ~vel~~i~ 222 (222)
.|+|.+|+
T Consensus 234 ~v~v~~V~ 241 (435)
T PRK01490 234 KVTVKEVK 241 (435)
T ss_pred EEEEEEec
Confidence 99999885
No 30
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=4.6e-07 Score=80.75 Aligned_cols=80 Identities=24% Similarity=0.537 Sum_probs=68.4
Q ss_pred eeEEEEEEEEeccCCcccCCCCCCCcEEEEeCCCeeeechhhhccCceeccEEEEEecCCCCCCCCCCCCCCCCCCeEEE
Q psy4022 135 KNISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPAIPPNSTLVF 214 (222)
Q Consensus 135 ~~V~v~y~g~~~~~g~~fd~~~~~~p~~~~lg~g~~i~g~~~~l~~m~~Ge~~~~~vp~~~~yg~~~~~~~ip~~~~L~f 214 (222)
+.|++.|.|.. ||..|.+. ..+.+.+.||+|++||||+.+|.||++|+.+.|.|-.+..|....+. |.+..|
T Consensus 162 D~v~IDf~g~i--Dg~~fegg-~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~La-----GK~a~F 233 (441)
T COG0544 162 DRVTIDFEGSV--DGEEFEGG-KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEELA-----GKEATF 233 (441)
T ss_pred CEEEEEEEEEE--cCeeccCc-cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHhC-----CCceEE
Confidence 56899999977 88888877 45679999999999999999999999999999777777677776665 478999
Q ss_pred EEEEEeeC
Q psy4022 215 DVELKNVN 222 (222)
Q Consensus 215 ~vel~~i~ 222 (222)
.|.|..|+
T Consensus 234 ~V~vkeVk 241 (441)
T COG0544 234 KVKVKEVK 241 (441)
T ss_pred EEEEEEEe
Confidence 99999874
No 31
>KOG0545|consensus
Probab=95.85 E-value=0.0038 Score=51.34 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=60.7
Q ss_pred CcEEEEeeecCCC----CCCCCEEEEEEEEEEcC-CCeEEeccc-CCCCeEEEcCCCcccchHHHHhcCCccCcEEEEec
Q psy4022 34 TGKIHHIFLLSLS----YKKESNISVYYVGKLKS-NNKQFDSST-QGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107 (222)
Q Consensus 34 ~~~~~~~~~~g~~----~~~gd~V~i~y~~~~~~-dg~~~~st~-~~~p~~~~lg~~~~i~Gle~al~~m~~Ge~~~v~i 107 (222)
.++-+++..+|.+ ..+|..|++||....-. .++++|+|. .++|+.+++|..--++-||..|..|+++|.+.|.+
T Consensus 10 ~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~EvaqF~~ 89 (329)
T KOG0545|consen 10 EGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQFWC 89 (329)
T ss_pred hhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHHhhh
Confidence 4566666666664 58899999999987632 356899996 67899999998888999999999999999888765
No 32
>KOG0545|consensus
Probab=81.73 E-value=0.59 Score=38.80 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=46.8
Q ss_pred eeEEEEEEEEeccC-CcccCCC-CCCCcEEEEeCCCeeeechhhhccCceeccEEEEEec
Q psy4022 135 KNISVYYVGKLKSN-NQQFDSS-TQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIP 192 (222)
Q Consensus 135 ~~V~v~y~g~~~~~-g~~fd~~-~~~~p~~~~lg~g~~i~g~~~~l~~m~~Ge~~~~~vp 192 (222)
..+.+||.....++ +.++|.| ..++|+.+.+|.---++-|+..|..|+++|.+.|.+.
T Consensus 31 Trv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~EvaqF~~d 90 (329)
T KOG0545|consen 31 TRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQFWCD 90 (329)
T ss_pred ceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHHhhhh
Confidence 34677887766433 4578888 4799999999988889999999999999998877654
No 33
>PHA02122 hypothetical protein
Probab=52.73 E-value=31 Score=21.62 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=23.5
Q ss_pred CCcCcEEEEeeecCCCCCCCCEEEEEEEEEEcCCCeEEec
Q psy4022 31 KSITGKIHHIFLLSLSYKKESNISVYYVGKLKSNNKQFDS 70 (222)
Q Consensus 31 ~~~~~~~~~~~~~g~~~~~gd~V~i~y~~~~~~dg~~~~s 70 (222)
...++++..... ..||.|.++|.... +|+.|-.
T Consensus 27 ~~~~~iiihs~~-----~~gd~v~vn~e~~~--ng~l~i~ 59 (65)
T PHA02122 27 DGCENIIIHSFK-----DDGDEVIVNFELVV--NGKLIIN 59 (65)
T ss_pred CCCCcEEEEeec-----cCCCEEEEEEEEEE--CCEEEEe
Confidence 344566665544 45999999999988 8877653
No 34
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=36.30 E-value=97 Score=25.04 Aligned_cols=54 Identities=11% Similarity=0.074 Sum_probs=36.8
Q ss_pred ecCCCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCC---------cccchHHHHhcCCccCcE
Q psy4022 42 LLSLSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKG---------EVIKGWDVGLNGMKVGGK 102 (222)
Q Consensus 42 ~~g~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~---------~~i~Gle~al~~m~~Ge~ 102 (222)
..++.+++||.|.+++.+.. +|-.-|.+ .+|.+|.- .+....+.++..+++|-+
T Consensus 72 ~~~r~l~~GD~v~~d~g~~~--~GY~ad~~-----RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~ 134 (228)
T cd01090 72 VTNRKVQRGDILSLNCFPMI--AGYYTALE-----RTLFLDEVSDAHLKIWEANVAVHERGLELIKPGAR 134 (228)
T ss_pred CCCcccCCCCEEEEEEeEEE--CCEeeeeE-----EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 34567899999999998876 77544433 34556622 234567778888888855
No 35
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=31.44 E-value=45 Score=21.46 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=17.2
Q ss_pred chhhhccCceeccEEEEEecCC
Q psy4022 173 GWDVGLNGMKVGGKRRITIPAH 194 (222)
Q Consensus 173 g~~~~l~~m~~Ge~~~~~vp~~ 194 (222)
-+..|+..|..||++.++..+.
T Consensus 36 El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 36 ELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp HHHHHHTT-BTT-EEEEEETTS
T ss_pred HHHHHHHHhhcCceeEEEEecC
Confidence 4778999999999999998765
No 36
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=30.26 E-value=1e+02 Score=25.98 Aligned_cols=52 Identities=8% Similarity=0.125 Sum_probs=36.5
Q ss_pred CCCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCC------cccchHHHHhcCCccCcE
Q psy4022 44 SLSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKG------EVIKGWDVGLNGMKVGGK 102 (222)
Q Consensus 44 g~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~------~~i~Gle~al~~m~~Ge~ 102 (222)
.+..++||.|.++.-+.. ||-.-|.+ .+|.+|.. .+..+++.++..|++|-+
T Consensus 68 ~~~l~~GDvV~iD~G~~~--dGY~sD~a-----rT~~vg~~~~~l~ea~~~A~~~ai~~ikPG~~ 125 (291)
T cd01088 68 DTVLKEGDVVKLDFGAHV--DGYIADSA-----FTVDFDPKYDDLLEAAKEALNAAIKEAGPDVR 125 (291)
T ss_pred CcccCCCCEEEEEEEEEE--CCEEEEEE-----EEEecChhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 356899999999988776 88666654 34555532 134577778888888764
No 37
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=30.07 E-value=1.1e+02 Score=27.08 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=36.7
Q ss_pred CCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCC----------c----ccchHHHHhcCCccCcE
Q psy4022 45 LSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKG----------E----VIKGWDVGLNGMKVGGK 102 (222)
Q Consensus 45 ~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~----------~----~i~Gle~al~~m~~Ge~ 102 (222)
+..+.||.|.|++-+.. ||-.-|.+ .+|.+|.. . ...+++.|+..+++|-+
T Consensus 99 ~~Lk~GDvVkIDlG~~i--dGY~aD~a-----rTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~vkPG~~ 163 (389)
T TIGR00495 99 YILKEGDVVKIDLGCHI--DGFIALVA-----HTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNT 163 (389)
T ss_pred cCcCCCCEEEEEEEEEE--CCEEEEEE-----EEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 56899999999999888 88777665 45666631 1 22456778888888754
No 38
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=28.97 E-value=65 Score=21.23 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=19.0
Q ss_pred ccchHHHHhcCCccCcEEEEecCCc
Q psy4022 86 VIKGWDVGLNGMKVGGKRRITIPAH 110 (222)
Q Consensus 86 ~i~Gle~al~~m~~Ge~~~v~ip~~ 110 (222)
...-+-.||.|.++|+...+.+|..
T Consensus 42 ~~SPLG~ALlG~~~Gd~v~~~~~~g 66 (77)
T PF01272_consen 42 IDSPLGKALLGKKVGDEVEVELPGG 66 (77)
T ss_dssp TTSHHHHHHTT-BTT-EEEEEETTB
T ss_pred ecCHHHHHhcCCCCCCEEEEEeCCc
Confidence 3456889999999999999998654
No 39
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=28.08 E-value=1.6e+02 Score=24.60 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=38.4
Q ss_pred eeecCCCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCCc------cc----chHHHHhcCCccCcE
Q psy4022 40 IFLLSLSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGE------VI----KGWDVGLNGMKVGGK 102 (222)
Q Consensus 40 ~~~~g~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~~------~i----~Gle~al~~m~~Ge~ 102 (222)
++......++||.|.|+..... ||-.-|+. .+|.+|... ++ ..|+.|+..+++|-+
T Consensus 80 iP~d~~vlk~GDiv~IDvg~~~--dG~~~Dsa-----~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~ 145 (255)
T COG0024 80 IPGDKKVLKEGDIVKIDVGAHI--DGYIGDTA-----ITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGAR 145 (255)
T ss_pred CCCCCcccCCCCEEEEEEEEEE--CCeeeeEE-----EEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 3333345799999999999888 88766654 667787321 22 467777777777754
No 40
>PRK08671 methionine aminopeptidase; Provisional
Probab=27.37 E-value=1.3e+02 Score=25.47 Aligned_cols=52 Identities=8% Similarity=0.119 Sum_probs=36.2
Q ss_pred CCCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCCc------ccchHHHHhcCCccCcE
Q psy4022 44 SLSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGE------VIKGWDVGLNGMKVGGK 102 (222)
Q Consensus 44 g~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~~------~i~Gle~al~~m~~Ge~ 102 (222)
.+.+++||.|.++.-+.. ||-..|.+ .++.+|... +..+++.++..+++|-+
T Consensus 69 ~~~l~~GDvV~iD~G~~~--dGY~aD~a-----rT~~vG~~~~~l~~a~~~a~~aai~~ikpG~~ 126 (291)
T PRK08671 69 ERVFPEGDVVKLDLGAHV--DGYIADTA-----VTVDLGGKYEDLVEASEEALEAAIEVVRPGVS 126 (291)
T ss_pred CcccCCCCEEEEEEeEEE--CCEEEEEE-----EEEEeChhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 356899999999998776 88766655 345666321 34567777888888744
No 41
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=27.23 E-value=1.3e+02 Score=25.51 Aligned_cols=52 Identities=10% Similarity=0.204 Sum_probs=36.0
Q ss_pred CCCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCC--c----ccchHHHHhcCCccCcE
Q psy4022 44 SLSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKG--E----VIKGWDVGLNGMKVGGK 102 (222)
Q Consensus 44 g~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~--~----~i~Gle~al~~m~~Ge~ 102 (222)
.+..++||.|.++.-+.. ||-.-|.+ .+|.+|.. . +..+++.|+..+++|-+
T Consensus 72 ~~~l~~GDvV~iD~G~~~--dGY~aD~a-----rT~~vG~~~~~l~~a~~~A~~aai~~~kPGv~ 129 (295)
T TIGR00501 72 KTVFKDGDVVKLDLGAHV--DGYIADTA-----ITVDLGDQYDNLVKAAKDALYTAIKEIRAGVR 129 (295)
T ss_pred CccCCCCCEEEEEEeEEE--CCEEEEEE-----EEEEeCcHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 346899999999998777 88766655 34666643 2 23566777777787754
No 42
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=27.13 E-value=1.9e+02 Score=23.17 Aligned_cols=53 Identities=8% Similarity=0.106 Sum_probs=35.6
Q ss_pred cCCCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCC-------c-------ccchHHHHhcCCccCcE
Q psy4022 43 LSLSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKG-------E-------VIKGWDVGLNGMKVGGK 102 (222)
Q Consensus 43 ~g~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~-------~-------~i~Gle~al~~m~~Ge~ 102 (222)
..+.+++||.|.+++-+.. +|-.-|.+ -+|.+|.- . +....+.++..+++|-+
T Consensus 79 ~~~~l~~Gd~v~iD~g~~~--~GY~sD~t-----RT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~ 145 (228)
T cd01089 79 ATYTLKDGDVVKIDLGCHI--DGYIAVVA-----HTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQ 145 (228)
T ss_pred CCcccCCCCEEEEEEEEEE--CCEEEEEE-----EEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 4456899999999998877 78655554 33555532 1 13456777788888854
No 43
>PLN03158 methionine aminopeptidase; Provisional
Probab=23.39 E-value=2.1e+02 Score=25.48 Aligned_cols=53 Identities=11% Similarity=-0.005 Sum_probs=37.3
Q ss_pred cCCCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCC---------cccchHHHHhcCCccCcE
Q psy4022 43 LSLSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKG---------EVIKGWDVGLNGMKVGGK 102 (222)
Q Consensus 43 ~g~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~---------~~i~Gle~al~~m~~Ge~ 102 (222)
..+..++||.|.++..++. +|---|.+ -+|.+|.- .+...++.++..+++|-+
T Consensus 214 ~~r~L~~GDiV~iDvg~~~--~GY~aD~t-----RT~~VG~~~~e~~~l~e~~~eal~~aI~~vkPGv~ 275 (396)
T PLN03158 214 DARKLEDGDIVNVDVTVYY--KGCHGDLN-----ETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVR 275 (396)
T ss_pred CCccCCCCCEEEEEEeEEE--CCEEEeEE-----eEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4567899999999999887 78655544 34556632 145677888888888854
No 44
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=23.31 E-value=1.2e+02 Score=27.83 Aligned_cols=52 Identities=8% Similarity=0.158 Sum_probs=36.3
Q ss_pred CCCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCC--c----ccchHHHHhcCCccCcE
Q psy4022 44 SLSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKG--E----VIKGWDVGLNGMKVGGK 102 (222)
Q Consensus 44 g~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~--~----~i~Gle~al~~m~~Ge~ 102 (222)
.+..+.||.|.|++-... ||...|.+ .+|.+|.. . +..+++.|+..+++|-+
T Consensus 231 ~~vLk~GDvVkID~G~~v--dGYiaD~A-----rTv~vg~~~~~L~eAv~eA~~aaI~~~kpGv~ 288 (470)
T PTZ00053 231 KTVLTYDDVCKLDFGTHV--NGRIIDCA-----FTVAFNPKYDPLLQATKDATNTGIKEAGIDVR 288 (470)
T ss_pred CcEecCCCeEEEEEeEEE--CCEEEeEE-----EEEEeCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 345899999999999888 89888876 33555532 1 23566667777777654
No 45
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=22.78 E-value=1.7e+02 Score=23.64 Aligned_cols=53 Identities=13% Similarity=0.035 Sum_probs=36.3
Q ss_pred cCCCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCC---------cccchHHHHhcCCccCcE
Q psy4022 43 LSLSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKG---------EVIKGWDVGLNGMKVGGK 102 (222)
Q Consensus 43 ~g~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~---------~~i~Gle~al~~m~~Ge~ 102 (222)
.++.+++||.|.+++-+.. +|-.-|.+ -+|.+|.- .+..+++.++..+++|-+
T Consensus 80 ~~~~l~~Gd~v~iD~g~~~--~gY~aD~~-----RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~ 141 (247)
T TIGR00500 80 DKKVLKDGDIVNIDVGVIY--DGYHGDTA-----KTFLVGKISPEAEKLLECTEESLYKAIEEAKPGNR 141 (247)
T ss_pred CCcccCCCCEEEEEEEEEE--CCEEEEEE-----EEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3567899999999999877 77655544 34556631 134567777788888744
No 46
>PRK12897 methionine aminopeptidase; Reviewed
Probab=21.79 E-value=2.6e+02 Score=22.73 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=37.1
Q ss_pred cCCCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCC---------cccchHHHHhcCCccCcEE
Q psy4022 43 LSLSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKG---------EVIKGWDVGLNGMKVGGKR 103 (222)
Q Consensus 43 ~g~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~---------~~i~Gle~al~~m~~Ge~~ 103 (222)
.++..++||.|.+++-+.. +|-.-|.+ .+|.+|.- .+...++.++..+++|-+.
T Consensus 81 ~~~~l~~Gd~V~iD~g~~~--~GY~sD~t-----RT~~vG~~s~~~~~~~~~~~~a~~~~i~~~kpG~~~ 143 (248)
T PRK12897 81 ADVPLTEGDIVTIDMVVNL--NGGLSDSA-----WTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRV 143 (248)
T ss_pred CCcccCCCCEEEEEeeEEE--CCEEEEEE-----EEEEcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 4567899999999998876 67655554 34556632 1245667778888888553
No 47
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.06 E-value=2.2e+02 Score=20.82 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=28.3
Q ss_pred CCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCCcccchHHHHh
Q psy4022 45 LSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGL 94 (222)
Q Consensus 45 ~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~~~i~Gle~al 94 (222)
+.+..||.|++||--++..-|.--..+ --.|++..+....-|+-+.
T Consensus 69 r~iadGdLV~vh~hqt~~~pg~~~~v~----~DtfR~ddgkivEHWDviq 114 (129)
T COG4922 69 RVIADGDLVTVHYHQTVSEPGSYTTVT----FDTFRIDDGKIVEHWDVIQ 114 (129)
T ss_pred EEeccCCEEEEEEeeeeCCCCcceeEE----EEEEEeeCCceeeccchhh
Confidence 346889999999998772113211111 2346677777777777665
No 48
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=20.15 E-value=2.9e+02 Score=22.09 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=35.4
Q ss_pred cCCCCCCCCEEEEEEEEEEcCCCeEEecccCCCCeEEEcCCC---------cccchHHHHhcCCccCcE
Q psy4022 43 LSLSYKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKG---------EVIKGWDVGLNGMKVGGK 102 (222)
Q Consensus 43 ~g~~~~~gd~V~i~y~~~~~~dg~~~~st~~~~p~~~~lg~~---------~~i~Gle~al~~m~~Ge~ 102 (222)
.++.+++||.|.++.-+.. +|-.-+-+ -+|.+|.. .+..+.+.++..|++|-+
T Consensus 72 ~~~~l~~Gd~v~id~g~~~--~GY~ad~~-----RT~~~G~~~~~~~~~~~~~~~~~~~~~~~~~pG~~ 133 (238)
T cd01086 72 DDRVLKDGDIVNIDVGVEL--DGYHGDSA-----RTFIVGEVSEEAKKLVEVTEEALYKGIEAVKPGNR 133 (238)
T ss_pred CCcccCCCCEEEEEEEEEE--CCEEEEEE-----EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3567899999999998876 67544444 34556632 134566677777777754
Done!