RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4022
(222 letters)
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein,
phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP:
d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Length = 280
Score = 214 bits (547), Expect = 5e-70
Identities = 65/212 (30%), Positives = 93/212 (43%), Gaps = 45/212 (21%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
+ V+Y G L + +FDSS F F LGKGEVIK WD+ + MKVG IT
Sbjct: 68 MIGDRVFVHYTGWLL-DGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHIT 126
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVEL-------------------------------- 134
AYG+ GSPP IPPN+TLVF+VEL
Sbjct: 127 CKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNE 186
Query: 135 -KNISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIK---GWDVGLNGMKVGGKRRIT 190
+ V G ++ FD +F +G+GE + G + + M+ G +
Sbjct: 187 GAIVEVALEGYY--KDKLFDQR----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVY 240
Query: 191 IPAHMAYGNKGSPP-AIPPNSTLVFDVELKNV 221
+ A+G+ G IPPN+ L +++ LK+
Sbjct: 241 LKPSYAFGSVGKEKFQIPPNAELKYELHLKSF 272
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain
five-stranded anti-parallel beta-sheet alpha-helix
crossing THis sheet; 2.08A {Triticum aestivum} PDB:
3jym_A
Length = 356
Score = 211 bits (540), Expect = 4e-68
Identities = 68/213 (31%), Positives = 96/213 (45%), Gaps = 43/213 (20%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSS-TQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
+ + V+Y G L + K+FDSS + FKF+LG+G+VIKGWD G+ MK G T
Sbjct: 28 EVGDEVEVHYTGTLL-DGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFT 86
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVEL-------------------------------- 134
IP +AYG GSPP IP N+TL FDVEL
Sbjct: 87 IPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDP 146
Query: 135 KNISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAH 194
+ V Y +L+ + S G +F + G + + MK G K + +
Sbjct: 147 DEVFVKYEARLE-DGTVVSKSE---GVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQ 202
Query: 195 MAYGNKGSPP-----AIPPNSTLVFDVELKNVN 222
+G G P A+PPN++LV D+EL +
Sbjct: 203 YGFGEMGRPAAGEGGAVPPNASLVIDLELVSWK 235
Score = 199 bits (507), Expect = 5e-63
Identities = 52/214 (24%), Positives = 83/214 (38%), Gaps = 44/214 (20%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
K + V Y +L+ + S G +F + G + + MK G K + +
Sbjct: 144 KDPDEVFVKYEARLE-DGTVVSKSE---GVEFTVKDGHLCPALAKAVKTMKKGEKVLLAV 199
Query: 108 PAHMAYGNKGSPP-----AIPPNSTLVFDVELKNI------------------------- 137
+G G P A+PPN++LV D+EL +
Sbjct: 200 KPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYER 259
Query: 138 -------SVYYVGKLKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRI 189
+V GKL+ F+F+ + VI+G D + MK G +
Sbjct: 260 PNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALV 319
Query: 190 TIPAHMAYGNKGSPPA--IPPNSTLVFDVELKNV 221
TIP AYG+ S +PPNST++++VEL +
Sbjct: 320 TIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSF 353
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 170 bits (431), Expect = 6e-51
Identities = 62/211 (29%), Positives = 92/211 (43%), Gaps = 43/211 (20%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSS-TQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
+ V+Y GKL SN K+FDSS + F F LGKG+VIK WD+G+ MK G +
Sbjct: 48 MIGDKVYVHYKGKL-SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLL 106
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKNI----------------------------- 137
AYG+ GS P IP N+TL F++EL +
Sbjct: 107 CKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGA 166
Query: 138 --SVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGE---VIKGWDVGLNGMKVGGKRRITIP 192
++ G+ + FD F +G+GE + G D L M+ + + +
Sbjct: 167 TVEIHLEGRC--GGRMFDCR----DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLG 220
Query: 193 AHMAYGNKGSPPA-IPPNSTLVFDVELKNVN 222
+G G P I PN+ L+++V LK+
Sbjct: 221 PRYGFGEAGKPKFGIEPNAELIYEVTLKSFE 251
Score = 87.4 bits (216), Expect = 2e-20
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGE---VIKGWDVGLNGMKVGGKRR 104
+ + + ++ G+ + FD F +G+GE + G D L M+ +
Sbjct: 163 NEGATVEIHLEGRC--GGRMFDCR----DVAFTVGEGEDHDIPIGIDKALEKMQREEQCI 216
Query: 105 ITIPAHMAYGNKGSPPA-IPPNSTLVFDVELKNISVYY 141
+ + +G G P I PN+ L+++V LK+
Sbjct: 217 LYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAK 254
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5;
2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A*
3ni6_A 3pa7_A
Length = 129
Score = 148 bits (375), Expect = 4e-46
Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
KK + ++V+YVGKL+S K FDSS FKF L +GEVIKGWD+ ++ M+ K +
Sbjct: 35 KKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVR 94
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
I + YG++G +IP NS L+F++EL +
Sbjct: 95 IESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
Score = 147 bits (372), Expect = 2e-45
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPA 193
++V+YVGKL+S + FDSS FKF L +GEVIKGWD+ ++ M+ K + I +
Sbjct: 38 NEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIES 97
Query: 194 HMAYGNKGSPPAIPPNSTLVFDVELKNVN 222
YG++G +IP NS L+F++EL +
Sbjct: 98 MYGYGDEGCGESIPGNSVLLFEIELLSFR 126
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae}
SCOP: d.26.1.1
Length = 113
Score = 142 bits (361), Expect = 4e-44
Identities = 46/92 (50%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
K ++++Y G L+ N ++FDSS G F+ +G G+VIKGWDVG+ + VG K R+T
Sbjct: 23 KTGDLVTIHYTGTLE-NGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT 81
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKNIS 138
IP AYG +G P IPPNSTLVFDVEL ++
Sbjct: 82 IPGPYAYGPRGFPGLIPPNSTLVFDVELLKVN 113
Score = 141 bits (358), Expect = 1e-43
Identities = 48/89 (53%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPA 193
++++Y G L+ N Q+FDSS G F+ +G G+VIKGWDVG+ + VG K R+TIP
Sbjct: 26 DLVTIHYTGTLE-NGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPG 84
Query: 194 HMAYGNKGSPPAIPPNSTLVFDVELKNVN 222
AYG +G P IPPNSTLVFDVEL VN
Sbjct: 85 PYAYGPRGFPGLIPPNSTLVFDVELLKVN 113
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
1.60A {Homo sapiens} PDB: 3o5f_A
Length = 144
Score = 142 bits (361), Expect = 9e-44
Identities = 40/91 (43%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
+ V+Y GKL N K+FDSS F F LGKG+VIK WD+G+ MK G +
Sbjct: 52 MIGDKVYVHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLL 110
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
AYG+ GS P IP N+TL F++EL +
Sbjct: 111 CKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141
Score = 139 bits (353), Expect = 2e-42
Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPA 193
+ V+Y GKL N ++FDSS F F LGKG+VIK WD+G+ MK G +
Sbjct: 55 DKVYVHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKP 113
Query: 194 HMAYGNKGSPPAIPPNSTLVFDVELKNVN 222
AYG+ GS P IP N+TL F++EL +
Sbjct: 114 EYAYGSAGSLPKIPSNATLFFEIELLDFK 142
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 143 bits (363), Expect = 3e-43
Identities = 46/91 (50%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
+ +SV+Y G L + ++FDSS F F LG G VIKGWD G+ GMKVGG RR+T
Sbjct: 120 RAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLT 178
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
IP + YG +G+ IPPN+TLVF+VEL ++
Sbjct: 179 IPPQLGYGARGAAGVIPPNATLVFEVELLDV 209
Score = 140 bits (355), Expect = 5e-42
Identities = 48/88 (54%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPA 193
+ +SV+Y G L + Q+FDSS F F LG G VIKGWD G+ GMKVGG RR+TIP
Sbjct: 123 QTVSVHYTGWLT-DGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 194 HMAYGNKGSPPAIPPNSTLVFDVELKNV 221
+ YG +G+ IPPN+TLVF+VEL +V
Sbjct: 182 QLGYGARGAAGVIPPNATLVFEVELLDV 209
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase,
polymorphism, rotamase, structural genomics, structural
genomics consortium, SGC; 1.80A {Homo sapiens}
Length = 102
Score = 139 bits (353), Expect = 4e-43
Identities = 44/91 (48%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
+K + ++Y GKL+ + +FDSS F F LG G+VIKGWD GL GM G KR++
Sbjct: 7 RKGDVLHMHYTGKLE-DGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLV 65
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
IP+ + YG +G+PP IP +TLVF+VEL I
Sbjct: 66 IPSELGYGERGAPPKIPGGATLVFEVELLKI 96
Score = 138 bits (350), Expect = 1e-42
Identities = 42/89 (47%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPA 193
+ ++Y GKL+ + +FDSS F F LG G+VIKGWD GL GM G KR++ IP+
Sbjct: 10 DVLHMHYTGKLE-DGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 68
Query: 194 HMAYGNKGSPPAIPPNSTLVFDVELKNVN 222
+ YG +G+PP IP +TLVF+VEL +
Sbjct: 69 ELGYGERGAPPKIPGGATLVFEVELLKIE 97
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A
3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Length = 128
Score = 140 bits (355), Expect = 5e-43
Identities = 40/91 (43%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
+ V+Y GKL N K+FDSS F F LGKG+VIK WD+G+ MK G +
Sbjct: 36 MIGDKVYVHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLL 94
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
AYG+ GS P IP N+TL F++EL +
Sbjct: 95 CKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125
Score = 137 bits (347), Expect = 9e-42
Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPA 193
+ V+Y GKL N ++FDSS F F LGKG+VIK WD+G+ MK G +
Sbjct: 39 DKVYVHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKP 97
Query: 194 HMAYGNKGSPPAIPPNSTLVFDVELKNVN 222
AYG+ GS P IP N+TL F++EL +
Sbjct: 98 EYAYGSAGSLPKIPSNATLFFEIELLDFK 126
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics,
structural genomics consortium, SGC, PE prolyl CIS-trans
isomerase; 1.82A {Homo sapiens}
Length = 125
Score = 139 bits (353), Expect = 8e-43
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQ---GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRR 104
K + V+Y G L+ + F S+ + G F LG E +KGWD GL GM VG KR+
Sbjct: 30 KGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRK 89
Query: 105 ITIPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
+ IP + YG +G IPP STL+F+++L I
Sbjct: 90 LIIPPALGYGKEGKGK-IPPESTLIFNIDLLEI 121
Score = 137 bits (348), Expect = 6e-42
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQ---GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 191
+ V+Y G L+ + F S+ + G F LG E +KGWD GL GM VG KR++ I
Sbjct: 33 DLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLII 92
Query: 192 PAHMAYGNKGSPPAIPPNSTLVFDVELKNVN 222
P + YG +G IPP STL+F+++L +
Sbjct: 93 PPALGYGKEGKGK-IPPESTLIFNIDLLEIR 122
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat,
williams-beuren syndrome, structural genomics
consortium, SGC; 2.10A {Homo sapiens}
Length = 134
Score = 140 bits (354), Expect = 9e-43
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
++++ V Y G L+ ++ FDS+ +LG+ + G ++GL M+ G R
Sbjct: 42 APDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFL 101
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
+ AYG G PP IPPN+T++F++EL +
Sbjct: 102 FKPNYAYGTLGCPPLIPPNTTVLFEIELLDF 132
Score = 136 bits (346), Expect = 1e-41
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPA 193
++ V Y G L+ ++ FDS+ +LG+ + G ++GL M+ G R
Sbjct: 45 ASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKP 104
Query: 194 HMAYGNKGSPPAIPPNSTLVFDVEL 218
+ AYG G PP IPPN+T++F++EL
Sbjct: 105 NYAYGTLGCPPLIPPNTTVLFEIEL 129
>2ppn_A FK506-binding protein 1A; high resolution protein structure,
isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB:
1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A*
1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A*
1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Length = 107
Score = 137 bits (348), Expect = 3e-42
Identities = 43/91 (47%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
K+ V+Y G L+ + K+FDSS FKF LGK EVI+GW+ G+ M VG + ++T
Sbjct: 17 KRGQTCVVHYTGMLE-DGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
I AYG G P IPP++TLVFDVEL +
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKL 106
Score = 134 bits (339), Expect = 6e-41
Identities = 41/88 (46%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPA 193
+ V+Y G L+ + ++FDSS FKF LGK EVI+GW+ G+ M VG + ++TI
Sbjct: 20 QTCVVHYTGMLE-DGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISP 78
Query: 194 HMAYGNKGSPPAIPPNSTLVFDVELKNV 221
AYG G P IPP++TLVFDVEL +
Sbjct: 79 DYAYGATGHPGIIPPHATLVFDVELLKL 106
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura
genomics, seattle structural genomics center for
infectious; NMR {Giardia lamblia}
Length = 130
Score = 137 bits (348), Expect = 6e-42
Identities = 45/91 (49%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
+ ++V+Y G+ + KQFDSS G F+F LG GEVIKGWD G+ M +G K T
Sbjct: 41 QAGKKVTVHYDGRFP-DGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT 99
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
IP +AYG +G PP IPP +TLVF+VEL +
Sbjct: 100 IPYQLAYGERGYPPVIPPKATLVFEVELLAV 130
Score = 134 bits (339), Expect = 2e-40
Identities = 46/88 (52%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPA 193
K ++V+Y G+ + +QFDSS G F+F LG GEVIKGWD G+ M +G K TIP
Sbjct: 44 KKVTVHYDGRFP-DGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPY 102
Query: 194 HMAYGNKGSPPAIPPNSTLVFDVELKNV 221
+AYG +G PP IPP +TLVF+VEL V
Sbjct: 103 QLAYGERGYPPVIPPKATLVFEVELLAV 130
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor,
SHH signalling antagonist, structural genomics
consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Length = 118
Score = 134 bits (339), Expect = 9e-41
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
K ++V+ L+ N + P F LG +VI+ D+ + M VG +T
Sbjct: 31 VKGQVVTVHLQTSLE-NGTRVQEE---PELVFTLGDCDVIQALDLSVPLMDVGETAMVTA 86
Query: 108 PAHMAYGNKGSPPAIPPNSTLVFDVELKNIS 138
+ YG +G P IPP++ L +V LK
Sbjct: 87 DSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117
Score = 131 bits (333), Expect = 8e-40
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAH 194
+ ++V+ L+ N + P F LG +VI+ D+ + M VG +T +
Sbjct: 34 QVVTVHLQTSLE-NGTRVQEE---PELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSK 89
Query: 195 MAYGNKGSPPAIPPNSTLVFDVELKNV 221
YG +G P IPP++ L +V LK
Sbjct: 90 YCYGPQGRSPYIPPHAALCLEVTLKTA 116
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET:
SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A
2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Length = 133
Score = 133 bits (336), Expect = 4e-40
Identities = 46/91 (50%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
+ +SV+Y G L ++ ++FDSS F F LG G VIKGWD G+ GMKVGG RR+T
Sbjct: 44 RAGQTVSVHYTGWL-TDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLT 102
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
IP + YG +G+ IPPN+TLVF+VEL ++
Sbjct: 103 IPPQLGYGARGAGGVIPPNATLVFEVELLDV 133
Score = 129 bits (326), Expect = 1e-38
Identities = 48/88 (54%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPA 193
+ +SV+Y G L ++ Q+FDSS F F LG G VIKGWD G+ GMKVGG RR+TIP
Sbjct: 47 QTVSVHYTGWL-TDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 105
Query: 194 HMAYGNKGSPPAIPPNSTLVFDVELKNV 221
+ YG +G+ IPPN+TLVF+VEL +V
Sbjct: 106 QLGYGARGAGGVIPPNATLVFEVELLDV 133
>1r9h_A FKB-6, FK506 binding protein family; structural genomics,
peptidylprolyl isomerase, PSI, protein structure
initiative; 1.80A {Caenorhabditis elegans} SCOP:
d.26.1.1
Length = 135
Score = 132 bits (335), Expect = 5e-40
Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
+ + V+YVG L+ N +FDSS G F F LG+G VIKGWD+G+ M G T
Sbjct: 31 TTGTTVKVHYVGTLE-NGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFT 89
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKNIS 138
I + YG+ GSPP IP +TL+F+VEL S
Sbjct: 90 IRSDYGYGDAGSPPKIPGGATLIFEVELFEWS 121
Score = 130 bits (329), Expect = 5e-39
Identities = 41/89 (46%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPA 193
+ V+YVG L+ N +FDSS G F F LG+G VIKGWD+G+ M G TI +
Sbjct: 34 TTVKVHYVGTLE-NGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRS 92
Query: 194 HMAYGNKGSPPAIPPNSTLVFDVELKNVN 222
YG+ GSPP IP +TL+F+VEL +
Sbjct: 93 DYGYGDAGSPPKIPGGATLIFEVELFEWS 121
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506
binding protein; 1.85A {Arabidopsis thaliana} SCOP:
d.26.1.1 PDB: 1y0o_A
Length = 129
Score = 132 bits (333), Expect = 9e-40
Identities = 46/103 (44%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNG------MKVG 100
K I +YVGKL N K FDSS G FR+G GEVIKGWD G+ G M G
Sbjct: 28 VKGQLIKAHYVGKL-ENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTG 86
Query: 101 GKRRITIPAHMAYGNKG-----SPPAIPPNSTLVFDVELKNIS 138
GKR + IP +AYG++G IPP S L+FD+E +
Sbjct: 87 GKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGKA 129
Score = 128 bits (323), Expect = 3e-38
Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 13/99 (13%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNG------MKVGGKR 187
+ I +YVGKL N + FDSS G FR+G GEVIKGWD G+ G M GGKR
Sbjct: 31 QLIKAHYVGKL-ENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKR 89
Query: 188 RITIPAHMAYGNKG-----SPPAIPPNSTLVFDVELKNV 221
+ IP +AYG++G IPP S L+FD+E
Sbjct: 90 TLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel,
central helix, with flexible N-terminal extension,
isomerase; NMR {Homo sapiens}
Length = 157
Score = 129 bits (325), Expect = 3e-38
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
K ++V+ L+ N + P F LG +VI+ D+ + M VG +T
Sbjct: 61 VKGQVVTVHLQTSLE-NGTRVQEE---PELVFTLGDCDVIQALDLSVPLMDVGETAMVTA 116
Query: 108 PAHMAYGNKGS-PPAIPPNSTLVFDVELKNI 137
+ YG +GS P IPP++ L +V LK
Sbjct: 117 DSKYCYGPQGSRSPYIPPHAALCLEVTLKTA 147
Score = 126 bits (319), Expect = 3e-37
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAH 194
+ ++V+ L+ N + P F LG +VI+ D+ + M VG +T +
Sbjct: 64 QVVTVHLQTSLE-NGTRVQEE---PELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSK 119
Query: 195 MAYGNKGS-PPAIPPNSTLVFDVELKNV 221
YG +GS P IPP++ L +V LK
Sbjct: 120 YCYGPQGSRSPYIPPHAALCLEVTLKTA 147
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 135
Score = 125 bits (316), Expect = 4e-37
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
K ++V+ L+ N + P F LG +VI+ D+ + M VG +T
Sbjct: 35 VKGQVVTVHLQTSLE-NGTRVQEE---PELVFTLGDCDVIQALDLSVPLMDVGETAMVTA 90
Query: 108 PAHMAYGNKGS-PPAIPPNSTLVFDVELKNI 137
+ YG +GS P IPP++ L +V LK
Sbjct: 91 DSKYCYGPQGSRSPYIPPHAALCLEVTLKTA 121
Score = 123 bits (312), Expect = 2e-36
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAH 194
+ ++V+ L+ N + P F LG +VI+ D+ + M VG +T +
Sbjct: 38 QVVTVHLQTSLE-NGTRVQEE---PELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSK 93
Query: 195 MAYGNKGS-PPAIPPNSTLVFDVELKNVN 222
YG +GS P IPP++ L +V LK
Sbjct: 94 YCYGPQGSRSPYIPPHAALCLEVTLKTAV 122
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A
{Arabidopsis thaliana}
Length = 180
Score = 126 bits (319), Expect = 4e-37
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQ-GPGFKFRLGK-GEVIKGWDVGLNGMKVGGKRRI 105
K S ++Y K++ +F+ + + LGK + + G +G+ MK G + +
Sbjct: 65 SKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALV 124
Query: 106 TIPAHMAYGNKG--SPPAIPPNSTLVFDVELKNI 137
+ +AYG +G S P +PP + L+++VE+
Sbjct: 125 HVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGF 158
Score = 123 bits (311), Expect = 7e-36
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQ-GPGFKFRLGK-GEVIKGWDVGLNGMKVGGKRRITIP 192
++Y K++ +F+ + + LGK + + G +G+ MK G + + +
Sbjct: 68 STCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVG 127
Query: 193 AHMAYGNKG--SPPAIPPNSTLVFDVELKNVN 222
+AYG +G S P +PP + L+++VE+ +
Sbjct: 128 WELAYGKEGNFSFPNVPPMADLLYEVEVIGFD 159
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus,
phosphoprotein, R isomerase-inhibitor complex; HET: RAP;
1.95A {Mus musculus} PDB: 1pbk_A*
Length = 119
Score = 124 bits (313), Expect = 8e-37
Identities = 38/99 (38%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPG--------FKFRLGKGEVIKGWDVGLNGMKV 99
KK + +Y G L + FD++ Q F++G G+VI+GWD L M
Sbjct: 21 KKGDVVHCWYTGTLP-DGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 79
Query: 100 GGKRRITIPAHMAYGNKGSP-PAIPPNSTLVFDVELKNI 137
G K R+ I AYG KG P IPPN+ L+F+VEL +I
Sbjct: 80 GEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118
Score = 122 bits (309), Expect = 4e-36
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQGPG--------FKFRLGKGEVIKGWDVGLNGMKVGGK 186
+ +Y G L + FD++ Q F++G G+VI+GWD L M G K
Sbjct: 24 DVVHCWYTGTLP-DGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEK 82
Query: 187 RRITIPAHMAYGNKGSP-PAIPPNSTLVFDVELKNVN 222
R+ I AYG KG P IPPN+ L+F+VEL +++
Sbjct: 83 ARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDID 119
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase,
isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Length = 167
Score = 111 bits (279), Expect = 4e-31
Identities = 38/91 (41%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSS-TQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
+ V+Y G+L + FDSS +G FR EVIKGW L M+ G + R+
Sbjct: 54 AIDDKCEVHYTGRL-RDGTVFDSSRERGKPTTFRPN--EVIKGWTEALQLMREGDRWRLF 110
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
IP +AYG G IPP S L FDVEL +I
Sbjct: 111 IPYDLAYGVTGGGGMIPPYSPLEFDVELISI 141
Score = 107 bits (269), Expect = 1e-29
Identities = 37/87 (42%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 137 ISVYYVGKLKSNNQQFDSS-TQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHM 195
V+Y G+L + FDSS +G FR EVIKGW L M+ G + R+ IP +
Sbjct: 59 CEVHYTGRL-RDGTVFDSSRERGKPTTFRPN--EVIKGWTEALQLMREGDRWRLFIPYDL 115
Query: 196 AYGNKGSPPAIPPNSTLVFDVELKNVN 222
AYG G IPP S L FDVEL ++
Sbjct: 116 AYGVTGGGGMIPPYSPLEFDVELISIK 142
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 110 bits (278), Expect = 2e-30
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
+ V YVG+L + K FD S FRL VI GW L M G K R+ I
Sbjct: 133 DANGRVEVRYVGRL-PDGKIFDQS--TQPQWFRLDS--VISGWTSALQNMPTGAKWRLVI 187
Query: 108 PAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
P+ AYG +G+ I P + LVF++EL +
Sbjct: 188 PSDQAYGAEGAGDLIDPFTPLVFEIELIAV 217
Score = 108 bits (271), Expect = 2e-29
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 137 ISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMA 196
+ V YVG+L + + FD S FRL VI GW L M G K R+ IP+ A
Sbjct: 138 VEVRYVGRL-PDGKIFDQS--TQPQWFRLDS--VISGWTSALQNMPTGAKWRLVIPSDQA 192
Query: 197 YGNKGSPPAIPPNSTLVFDVELKNVN 222
YG +G+ I P + LVF++EL V+
Sbjct: 193 YGAEGAGDLIDPFTPLVFEIELIAVS 218
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain,
long alpha helix, dimerisation VIA helical INTE
isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1
PDB: 2uz5_A 2vcd_A*
Length = 213
Score = 107 bits (269), Expect = 3e-29
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
K ++V Y G+L + FDS+ + G F++ +VI GW L M G I
Sbjct: 122 GKSDTVTVEYTGRL-IDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIY 178
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
+P+ +AYG + I PN TL+F + L ++
Sbjct: 179 VPSGLAYGPRSVGGPIGPNETLIFKIHLISV 209
Score = 104 bits (261), Expect = 5e-28
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 137 ISVYYVGKLKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHM 195
++V Y G+L + FDS+ + G F++ +VI GW L M G I +P+ +
Sbjct: 127 VTVEYTGRL-IDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIYVPSGL 183
Query: 196 AYGNKGSPPAIPPNSTLVFDVELKNVN 222
AYG + I PN TL+F + L +V
Sbjct: 184 AYGPRSVGGPIGPNETLIFKIHLISVK 210
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone,
peptidyl-prolyl isomerase, heat shock protein, FK
family; HET: MSE; 1.97A {Escherichia coli} SCOP:
d.26.1.1 PDB: 1q6i_A* 1q6u_A
Length = 224
Score = 102 bits (256), Expect = 3e-27
Identities = 43/91 (47%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
K + V Y G L + K+FD+S G FRL VI GW GL +K GGK ++
Sbjct: 137 KDSDTVVVNYKGTL-IDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV 193
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
IP +AYG G P IPPNSTLVFDVEL ++
Sbjct: 194 IPPELAYGKAGVPG-IPPNSTLVFDVELLDV 223
Score = 99.1 bits (247), Expect = 7e-26
Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Query: 137 ISVYYVGKLKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHM 195
+ V Y G L + ++FD+S G FRL VI GW GL +K GGK ++ IP +
Sbjct: 142 VVVNYKGTL-IDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIPPEL 198
Query: 196 AYGNKGSPPAIPPNSTLVFDVELKNV 221
AYG G P IPPNSTLVFDVEL +V
Sbjct: 199 AYGKAGVPG-IPPNSTLVFDVELLDV 223
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 90.1 bits (223), Expect = 1e-21
Identities = 26/146 (17%), Positives = 57/146 (39%), Gaps = 23/146 (15%)
Query: 98 KVGGKRRITIPAHMAYGNKGSPPAIPPNSTLVFDVE----LKNI---------------S 138
+T + + + +PP +V K I
Sbjct: 12 HDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCF 71
Query: 139 VYYVGKLKSNNQQFDSS-TQGPGFKFRLGK-GEVIKGWDVGLNGMKVGGKRRITIPAHMA 196
++Y K++ +F+ + + + LGK + + G +G+ MK G + + + +A
Sbjct: 72 LHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELA 131
Query: 197 YGNKGSPP--AIPPNSTLVFDVELKN 220
YG +G+ +PP + L+++VE+
Sbjct: 132 YGKEGNFSFPNVPPMADLLYEVEVIG 157
Score = 83.1 bits (205), Expect = 5e-19
Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSS-TQGPGFKFRLGK-GEVIKGWDVGLNGMKVGGKRRI 105
K S ++Y K++ +F+ + + + LGK + + G +G+ MK G + +
Sbjct: 65 SKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALV 124
Query: 106 TIPAHMAYGNKGSPP--AIPPNSTLVFDVELKNISVYY 141
+ +AYG +G+ +PP + L+++VE+
Sbjct: 125 HVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETK 162
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 66.8 bits (163), Expect = 2e-13
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGE---VIKGWDVGLNGMKVGGKRR 104
+ + + V G K +K FD +F +G+GE + G + + M+ G
Sbjct: 42 NEGAIVEVALEGYYK--DKLFDQR----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSI 95
Query: 105 ITIPAHMAYGNKGSPPA-IPPNSTLVFDVELKN 136
+ + A+G+ G IPPN+ L +++ LK+
Sbjct: 96 VYLKPSYAFGSVGKEKFQIPPNAELKYELHLKS 128
Score = 64.9 bits (158), Expect = 1e-12
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 18/111 (16%)
Query: 116 KGSPPAIPPNSTLVFDVELKNISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGE---VIK 172
+G A P +V V G K ++ FD +F +G+GE +
Sbjct: 34 RGEGYAKPNEGAIVE--------VALEGYYK--DKLFDQR----ELRFEIGEGENLDLPY 79
Query: 173 GWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPA-IPPNSTLVFDVELKNVN 222
G + + M+ G + + A+G+ G IPPN+ L +++ LK+
Sbjct: 80 GLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFE 130
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein,
rotamase; NMR {Helicobacter pylori}
Length = 151
Score = 60.7 bits (148), Expect = 4e-12
Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAH 194
+ + Y + + ++ DS+ +F +G ++I G + + ++G + I
Sbjct: 11 QAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPE 70
Query: 195 MAYGNKGSPPAIPPNSTLVFDVELKN 220
AYG S+ + +V
Sbjct: 71 EAYG--------VYESSYLQEVPRDQ 88
Score = 60.3 bits (147), Expect = 6e-12
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
+ + Y + + ++ DS+ +F +G ++I G + + ++G + I
Sbjct: 8 SIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVI 67
Query: 108 PAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
AYG S+ + +V
Sbjct: 68 APEEAYG--------VYESSYLQEVPRDQF 89
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone,
rotamase; NMR {Escherichia coli}
Length = 171
Score = 59.2 bits (144), Expect = 3e-11
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
K+ +S+ Y + + + D S + G G +I G + L G +VG K + +
Sbjct: 4 AKDLVVSLAYQVRTE-DGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62
Query: 108 PAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
A+ AYG + LV V
Sbjct: 63 GANDAYG--------QYDENLVQRVPKDVF 84
Score = 58.8 bits (143), Expect = 3e-11
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 137 ISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMA 196
+S+ Y + + + D S + G G +I G + L G +VG K + + A+ A
Sbjct: 9 VSLAYQVRTE-DGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDA 67
Query: 197 YGNKGSPPAIPPNSTLVFDVELKNV 221
YG + LV V
Sbjct: 68 YG--------QYDENLVQRVPKDVF 84
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF
domain, chaperone, peptidyl-prolyl isomerase isomerase;
1.35A {Escherichia coli}
Length = 169
Score = 58.5 bits (142), Expect = 4e-11
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPG-FKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
+ S + V++ KL + +S+ FRLG + +G + L G+KVG K +
Sbjct: 26 QSNSAVLVHFTLKLD-DGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFS 84
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKN 136
+ A+G P+ L+ +
Sbjct: 85 LEPDAAFG--------VPSPDLIQYFSRRE 106
Score = 57.7 bits (140), Expect = 7e-11
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQGPG-FKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPA 193
+ V++ KL + +S+ FRLG + +G + L G+KVG K ++
Sbjct: 29 SAVLVHFTLKLD-DGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEP 87
Query: 194 HMAYGNKGSPPAIPPNSTLVFDVELKN 220
A+G P+ L+ +
Sbjct: 88 DAAFG--------VPSPDLIQYFSRRE 106
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein,
cobalt, copper, cytoplasm, metal- binding, nickel,
rotamase, zinc; NMR {Escherichia coli}
Length = 196
Score = 58.9 bits (143), Expect = 4e-11
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 137 ISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMA 196
+S+ Y + + + D S + G G +I G + L G +VG K + + A+ A
Sbjct: 9 VSLAYQVRTE-DGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDA 67
Query: 197 YGNKGSPPAIPPNSTLVFDVELKNV 221
YG + LV V
Sbjct: 68 YG--------QYDENLVQRVPKDVF 84
Score = 58.9 bits (143), Expect = 4e-11
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
K+ +S+ Y + + + D S + G G +I G + L G +VG K + +
Sbjct: 4 AKDLVVSLAYQVRTE-DGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62
Query: 108 PAHMAYGNKGSPPAIPPNSTLVFDVELKNIS 138
A+ AYG + LV V
Sbjct: 63 GANDAYG--------QYDENLVQRVPKDVFM 85
>1ix5_A FKBP; ppiase, isomerase; NMR
{Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Length = 151
Score = 55.4 bits (134), Expect = 4e-10
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 23/104 (22%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPG--------------FKFRLGKGEVIKGWDVG 93
K I V Y+GKL+ + FD+S + +F +G+G++I+G++
Sbjct: 3 DKGVKIKVDYIGKLE-SGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEA 61
Query: 94 LNGMKVGGKRRITIPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
+ M+VG ++ + IPA AYG N L+ +
Sbjct: 62 VLDMEVGDEKTVKIPAEKAYG--------NRNEMLIQKIPRDAF 97
Score = 53.9 bits (130), Expect = 1e-09
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 23/98 (23%)
Query: 137 ISVYYVGKLKSNNQQFDSSTQGPG--------------FKFRLGKGEVIKGWDVGLNGMK 182
I V Y+GKL+ + FD+S + +F +G+G++I+G++ + M+
Sbjct: 8 IKVDYIGKLE-SGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDME 66
Query: 183 VGGKRRITIPAHMAYGNKGSPPAIPPNSTLVFDVELKN 220
VG ++ + IPA AYG N L+ +
Sbjct: 67 VGDEKTVKIPAEKAYG--------NRNEMLIQKIPRDA 96
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two
domain P rotamase; 2.41A {Thermus thermophilus} PDB:
3cgn_A 3luo_A*
Length = 158
Score = 53.0 bits (128), Expect = 3e-09
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 14/90 (15%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
++ +++ Y ++ + D + G +I G + L G + G + +
Sbjct: 4 GQDKVVTIRYTLQV--EGEVLDQG---E-LSYLHGHRNLIPGLEEALEGREEGEAFQAHV 57
Query: 108 PAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
PA AYG P + V V L
Sbjct: 58 PAEKAYG--------PHDPEGVQVVPLSAF 79
Score = 52.6 bits (127), Expect = 4e-09
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 14/85 (16%)
Query: 137 ISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMA 196
+++ Y ++ + D + G +I G + L G + G + +PA A
Sbjct: 9 VTIRYTLQV--EGEVLDQG---E-LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKA 62
Query: 197 YGNKGSPPAIPPNSTLVFDVELKNV 221
YG P + V V L
Sbjct: 63 YG--------PHDPEGVQVVPLSAF 79
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A
{Methanocaldococcus jannaschii} PDB: 3prd_A
Length = 231
Score = 52.5 bits (126), Expect = 1e-08
Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 24/104 (23%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPG--------------FKFRLGKGEVIKGWDVG 93
+K + + Y G + + K FD++ + G+G+V+ G D
Sbjct: 3 EKGKMVKISYDGYV--DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEA 60
Query: 94 LNGMKVGGKRRITIPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
+ M VG +R + +P A+G + + + + L
Sbjct: 61 ILEMDVGEEREVVLPPEKAFG--------KRDPSKIKLIPLSEF 96
Score = 51.4 bits (123), Expect = 3e-08
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 24/99 (24%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQGPG--------------FKFRLGKGEVIKGWDVGLNG 180
K + + Y G + + + FD++ + G+G+V+ G D +
Sbjct: 6 KMVKISYDGYV--DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILE 63
Query: 181 MKVGGKRRITIPAHMAYGNKGSPPAIPPNSTLVFDVELK 219
M VG +R + +P A+G + + + + L
Sbjct: 64 MDVGEEREVVLPPEKAFG--------KRDPSKIKLIPLS 94
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein,
chaperone; 1.95A {Methanocaldococcus jannaschii} PDB:
3pra_A
Length = 157
Score = 51.2 bits (123), Expect = 1e-08
Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 24/104 (23%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPG--------------FKFRLGKGEVIKGWDVG 93
+K + + Y G + + K FD++ + G+G+V+ G D
Sbjct: 3 EKGKMVKISYDGYV--DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEA 60
Query: 94 LNGMKVGGKRRITIPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
+ M VG +R + +P A+G + + + + L
Sbjct: 61 ILEMDVGEEREVVLPPEKAFG--------KRDPSKIKLIPLSEF 96
Score = 50.1 bits (120), Expect = 4e-08
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 24/98 (24%)
Query: 137 ISVYYVGKLKSNNQQFDSSTQGPG--------------FKFRLGKGEVIKGWDVGLNGMK 182
+ + Y G + + + FD++ + G+G+V+ G D + M
Sbjct: 8 VKISYDGYV--DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMD 65
Query: 183 VGGKRRITIPAHMAYGNKGSPPAIPPNSTLVFDVELKN 220
VG +R + +P A+G + + + + L
Sbjct: 66 VGEEREVVLPPEKAFG--------KRDPSKIKLIPLSE 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.015
Identities = 36/251 (14%), Positives = 67/251 (26%), Gaps = 94/251 (37%)
Query: 1 MFWGFVLEPKKRYNTTVTKPFHISMAALDPKSITGKIHHIFLLSLSYKKESNIS------ 54
+FW + + ++ V + L ++ FL+S K E
Sbjct: 67 LFWTLLSKQEEMVQKFVEE-------VLRI-------NYKFLMS-PIKTEQRQPSMMTRM 111
Query: 55 -VYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGW--------DVGLNGMKVGGK--- 102
+ +L ++N+ F RL ++ +V ++G+ GK
Sbjct: 112 YIEQRDRLYNDNQVFA-----KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 103 -----RRITIPAHMAY-------GNKGSPPAIPPNSTLVFDVELKNISVYYVGKLKSNNQ 150
+ M + N SP + L+ + Y ++ N
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM--------LQKL--LY--QIDPNWT 214
Query: 151 QFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPAIPPNS 210
+ K R+ I+ RR+ Y N
Sbjct: 215 SRSDHSSNI--KLRI---HSIQAE-----------LRRLL--KSKPY----------ENC 246
Query: 211 TLVFDVELKNV 221
LV NV
Sbjct: 247 LLVLL----NV 253
Score = 31.7 bits (71), Expect = 0.22
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 16/82 (19%)
Query: 1 MFWGFVLEPKKRYNTTVTKPFH-ISMAALDPKSITGKIHHIFLLSLSYKKESNISV---- 55
+ W + K V H S+ PK T I I+ L L K E+ ++
Sbjct: 394 LIWF---DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-LELKVKLENEYALHRSI 449
Query: 56 --YYVGKLKSNNKQFDSSTQGP 75
+Y + K FDS P
Sbjct: 450 VDHY-----NIPKTFDSDDLIP 466
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.016
Identities = 39/237 (16%), Positives = 68/237 (28%), Gaps = 84/237 (35%)
Query: 40 IFLLSLSYKKESNISVYYVG--KLKSNNKQFDSSTQGPGFKFRLGKGEVI---------K 88
I ++ L++ Y V L + S +G G + +
Sbjct: 241 IGVIQLAH--------YVVTAKLLGFTPGELRSYLKGA-----TGHSQGLVTAVAIAETD 287
Query: 89 GWD----VGLNGMKVG---GKRRITIPAHMAYGNKGSPPAI----------PPNSTL-VF 130
W+ + V G R + AY N PP+I P+ L +
Sbjct: 288 SWESFFVSVRKAITVLFFIGVR-----CYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 131 DVELKNISVYYVGKLKSNNQQFDSSTQ---------------GP-----GFKFRLGKGEV 170
++ + + Y + N + Q GP G L K +
Sbjct: 343 NLTQEQVQDY----VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 171 IKGWD---VGLNGMKVGGKRR---ITIPAHMAYGNKGSPPAIPPNSTLVFDVELKNV 221
G D + + K+ R + P H S +P + + D+ NV
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFH-------SHLLVPASDLINKDLVKNNV 448
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated
protein, nascent chain, cell division, isomerase; 2.7A
{Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1
PDB: 2vrh_A 1w2b_5
Length = 432
Score = 33.4 bits (77), Expect = 0.048
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 18/87 (20%)
Query: 57 YVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI--PAHMAYG 114
+ G + + ++F+ F +G+G +I G++ G+ G K G + I + P Y
Sbjct: 168 FTGSV--DGEEFEGGK-ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEE--YH 222
Query: 115 NK---GSPPAIPPNSTLVFDVELKNIS 138
+ G F + LK +
Sbjct: 223 AENLKGKA--------AKFAINLKKVE 241
Score = 32.6 bits (75), Expect = 0.094
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 18/86 (20%)
Query: 141 YVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI--PAHMAYG 198
+ G + + ++F+ F +G+G +I G++ G+ G K G + I + P Y
Sbjct: 168 FTGSV--DGEEFEGGK-ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEE--YH 222
Query: 199 NK---GSPPAIPPNSTLVFDVELKNV 221
+ G F + LK V
Sbjct: 223 AENLKGKA--------AKFAINLKKV 240
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase,
chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1
d.241.2.1 d.26.1.1 PDB: 1l1p_A
Length = 392
Score = 33.0 bits (76), Expect = 0.054
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 57 YVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
+VG + + +F+ F +G G +I G++ G+ G G + I +
Sbjct: 171 FVGSI--DGVEFEGGK-AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDV 218
Score = 32.2 bits (74), Expect = 0.11
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 141 YVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 191
+VG + + +F+ F +G G +I G++ G+ G G + I +
Sbjct: 171 FVGSI--DGVEFEGGK-AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDV 218
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma
genitalium} SCOP: d.26.1.1
Length = 113
Score = 31.4 bits (72), Expect = 0.075
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 18/86 (20%)
Query: 57 YVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRI--TIPAHMAYG 114
+ G + +NK+ S++ ++ +G IKG++ GL MKV K+ + T P+ Y
Sbjct: 40 FTGIV--DNKKLASAS-AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPS--DYH 94
Query: 115 NK---GSPPAIPPNSTLVFDVELKNI 137
K P + F+V LK I
Sbjct: 95 VKELQSKP--------VTFEVVLKAI 112
Score = 30.2 bits (69), Expect = 0.16
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 18/86 (20%)
Query: 141 YVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRI--TIPAHMAYG 198
+ G + +N++ S++ ++ +G IKG++ GL MKV K+ + T P+ Y
Sbjct: 40 FTGIV--DNKKLASAS-AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPS--DYH 94
Query: 199 NK---GSPPAIPPNSTLVFDVELKNV 221
K P + F+V LK +
Sbjct: 95 VKELQSKP--------VTFEVVLKAI 112
>1xkw_A Fe(III)-pyochelin receptor; TONB dependent receptor, membrane
protein; HET: LDA 188; 2.00A {Pseudomonas aeruginosa}
Length = 665
Score = 30.3 bits (69), Expect = 0.46
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 17/99 (17%)
Query: 114 GNKGSPPAIPPNSTL-VFDVELKNISVYYVGKLKSNNQQFDSSTQGP---GFKFRLGKGE 169
G KG N +L F ++L+N N F S GF+ G
Sbjct: 471 GIKGELADGRLNLSLAAFRIDLENNPQEDPDHPGPPNNPFYISGGKVRSQGFELEG-TGY 529
Query: 170 VIKGWDVGL------------NGMKVGGKRRITIPAHMA 196
+ W + + G + P H+
Sbjct: 530 LTPYWSLSAGYTYTSTEYLKDSQNDSGTRYSTFTPRHLL 568
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 28.0 bits (63), Expect = 2.6
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 15/60 (25%)
Query: 88 KGWDVGLNGMKVGGKRRITIPAHMA-------YGN-KGSPPAIPPNSTLVFDVELKNISV 139
+ LN VGGK + +A YG P + + K++ +
Sbjct: 239 PQPRLALNC--VGGKSSTELLRQLARGGTMVTYGGMAKQPVVASVSLLI-----FKDLKL 291
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 27.7 bits (62), Expect = 3.1
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 17/74 (22%)
Query: 88 KGWDVGLNGMKVGGKRRITIPAHMA-------YGN-KGSPPAIPPNSTLVFDVELKNISV 139
+ LN VGGK I + YG P IP + + KN +
Sbjct: 244 GEAKLALNC--VGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYI-----FKNFTS 296
Query: 140 --YYVGKLKSNNQQ 151
++V +L NN++
Sbjct: 297 AGFWVTELLKNNKE 310
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.138 0.416
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,457,933
Number of extensions: 199319
Number of successful extensions: 570
Number of sequences better than 10.0: 1
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 86
Length of query: 222
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 132
Effective length of database: 4,188,903
Effective search space: 552935196
Effective search space used: 552935196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.0 bits)