RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4022
(222 letters)
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
(MIP) {Legionella pneumophila [TaxId: 446]}
Length = 204
Score = 88.8 bits (219), Expect = 2e-22
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 47 YKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
K ++V Y G+L + G F +VI GW L M G I
Sbjct: 113 PGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATF--QVSQVIPGWTEALQLMPAGSTWEIY 170
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
+P+ +AYG + I PN TL+F + L ++
Sbjct: 171 VPSGLAYGPRSVGGPIGPNETLIFKIHLISV 201
Score = 86.8 bits (214), Expect = 1e-21
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 137 ISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMA 196
++V Y G+L + G F +VI GW L M G I +P+ +A
Sbjct: 119 VTVEYTGRLIDGTVFDSTEKTGKPATF--QVSQVIPGWTEALQLMPAGSTWEIYVPSGLA 176
Query: 197 YGNKGSPPAIPPNSTLVFDVELKNV 221
YG + I PN TL+F + L +V
Sbjct: 177 YGPRSVGGPIGPNETLIFKIHLISV 201
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA
{Escherichia coli [TaxId: 562]}
Length = 210
Score = 87.6 bits (216), Expect = 5e-22
Identities = 41/91 (45%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 47 YKKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRIT 106
K + V Y G L + +S T+G FRL VI GW GL +K GGK ++
Sbjct: 122 PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWTEGLKNIKKGGKIKLV 179
Query: 107 IPAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
IP +AYG G P IPPNSTLVFDVEL ++
Sbjct: 180 IPPELAYGKAGVPG-IPPNSTLVFDVELLDV 209
Score = 84.9 bits (209), Expect = 5e-21
Identities = 41/86 (47%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 136 NISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHM 195
+ V Y G L + +S T+G FRL VI GW GL +K GGK ++ IP +
Sbjct: 127 TVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWTEGLKNIKKGGKIKLVIPPEL 184
Query: 196 AYGNKGSPPAIPPNSTLVFDVELKNV 221
AYG G P IPPNSTLVFDVEL +V
Sbjct: 185 AYGKAGVPG-IPPNSTLVFDVELLDV 209
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 113
Score = 82.1 bits (202), Expect = 6e-21
Identities = 43/91 (47%), Positives = 59/91 (64%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
K ++++Y G L++ K S +G F+ +G G+VIKGWDVG+ + VG K R+TI
Sbjct: 23 KTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTI 82
Query: 108 PAHMAYGNKGSPPAIPPNSTLVFDVELKNIS 138
P AYG +G P IPPNSTLVFDVEL ++
Sbjct: 83 PGPYAYGPRGFPGLIPPNSTLVFDVELLKVN 113
Score = 80.6 bits (198), Expect = 2e-20
Identities = 43/86 (50%), Positives = 58/86 (67%)
Query: 137 ISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMA 196
++++Y G L++ + S +G F+ +G G+VIKGWDVG+ + VG K R+TIP A
Sbjct: 28 VTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYA 87
Query: 197 YGNKGSPPAIPPNSTLVFDVELKNVN 222
YG +G P IPPNSTLVFDVEL VN
Sbjct: 88 YGPRGFPGLIPPNSTLVFDVELLKVN 113
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 118
Score = 80.9 bits (199), Expect = 2e-20
Identities = 39/91 (42%), Positives = 53/91 (58%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
+ + V+YVG L++ K S +G F F LG+G VIKGWD+G+ M G TI
Sbjct: 27 TTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTI 86
Query: 108 PAHMAYGNKGSPPAIPPNSTLVFDVELKNIS 138
+ YG+ GSPP IP +TL+F+VEL S
Sbjct: 87 RSDYGYGDAGSPPKIPGGATLIFEVELFEWS 117
Score = 79.4 bits (195), Expect = 9e-20
Identities = 37/86 (43%), Positives = 52/86 (60%)
Query: 137 ISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMA 196
+ V+YVG L++ + S +G F F LG+G VIKGWD+G+ M G TI +
Sbjct: 32 VKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYG 91
Query: 197 YGNKGSPPAIPPNSTLVFDVELKNVN 222
YG+ GSPP IP +TL+F+VEL +
Sbjct: 92 YGDAGSPPKIPGGATLIFEVELFEWS 117
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 80.9 bits (199), Expect = 2e-20
Identities = 42/90 (46%), Positives = 50/90 (55%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
+ V+Y G L K S + F F LGKGEVIK WD+ + MKVG IT
Sbjct: 28 MIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITC 87
Query: 108 PAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
AYG+ GSPP IPPN+TLVF+VEL
Sbjct: 88 KPEYAYGSAGSPPKIPPNATLVFEVELFEF 117
Score = 78.2 bits (192), Expect = 2e-19
Identities = 41/85 (48%), Positives = 50/85 (58%)
Query: 137 ISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMA 196
+ V+Y G L + S + F F LGKGEVIK WD+ + MKVG IT A
Sbjct: 33 VFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYA 92
Query: 197 YGNKGSPPAIPPNSTLVFDVELKNV 221
YG+ GSPP IPPN+TLVF+VEL
Sbjct: 93 YGSAGSPPKIPPNATLVFEVELFEF 117
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an
immunophilin {Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 80.2 bits (197), Expect = 3e-20
Identities = 40/90 (44%), Positives = 53/90 (58%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
K+ V+Y G L+ K S + FKF LGK EVI+GW+ G+ M VG + ++TI
Sbjct: 17 KRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTI 76
Query: 108 PAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
AYG G P IPP++TLVFDVEL +
Sbjct: 77 SPDYAYGATGHPGIIPPHATLVFDVELLKL 106
Score = 77.5 bits (190), Expect = 3e-19
Identities = 38/87 (43%), Positives = 52/87 (59%)
Query: 135 KNISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAH 194
+ V+Y G L+ + S + FKF LGK EVI+GW+ G+ M VG + ++TI
Sbjct: 20 QTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPD 79
Query: 195 MAYGNKGSPPAIPPNSTLVFDVELKNV 221
AYG G P IPP++TLVFDVEL +
Sbjct: 80 YAYGATGHPGIIPPHATLVFDVELLKL 106
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 115
Score = 78.6 bits (193), Expect = 2e-19
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
+ + + ++ G+ ++ G D L M+ + + +
Sbjct: 25 NEGARVQIHLEGRCGGRVFDC---RDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILHL 81
Query: 108 PAHMAYGNKGSPPA-IPPNSTLVFDVELKNI 137
+G G P I PN+ L+++V LK+
Sbjct: 82 GPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 112
Score = 76.2 bits (187), Expect = 1e-18
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 137 ISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMA 196
+ ++ G+ ++ G D L M+ + + +
Sbjct: 30 VQIHLEGRCGGRVFDC---RDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILHLGPRYG 86
Query: 197 YGNKGSPPA-IPPNSTLVFDVELKNV 221
+G G P I PN+ L+++V LK+
Sbjct: 87 FGEAGKPKFGIEPNAELIYEVTLKSF 112
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 111
Score = 77.1 bits (189), Expect = 4e-19
Identities = 36/90 (40%), Positives = 48/90 (53%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
+ V+Y GKL + K S + F F +GKG+VIK WD+G+ MK G +
Sbjct: 21 MIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLC 80
Query: 108 PAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
AYG GS P IP N+TL F+VEL +
Sbjct: 81 KPEYAYGATGSLPKIPSNATLFFEVELLDF 110
Score = 74.8 bits (183), Expect = 4e-18
Identities = 35/85 (41%), Positives = 48/85 (56%)
Query: 137 ISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMA 196
+ V+Y GKL + + S + F F +GKG+VIK WD+G+ MK G + A
Sbjct: 26 VYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCKPEYA 85
Query: 197 YGNKGSPPAIPPNSTLVFDVELKNV 221
YG GS P IP N+TL F+VEL +
Sbjct: 86 YGATGSLPKIPSNATLFFEVELLDF 110
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 125
Score = 70.7 bits (172), Expect = 2e-16
Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 11/98 (11%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDV------GLNGMKVGG 101
K I +YVGKL++ S +G FR+G GEVIKGWD G+ M GG
Sbjct: 24 VKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG 83
Query: 102 KRRITIPAHMAYGNKGS-----PPAIPPNSTLVFDVEL 134
KR + IP +AYG++G+ IPP S L+FD+E
Sbjct: 84 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEY 121
Score = 68.4 bits (166), Expect = 1e-15
Identities = 39/93 (41%), Positives = 52/93 (55%), Gaps = 11/93 (11%)
Query: 137 ISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDV------GLNGMKVGGKRRIT 190
I +YVGKL++ S +G FR+G GEVIKGWD G+ M GGKR +
Sbjct: 29 IKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLR 88
Query: 191 IPAHMAYGNKGS-----PPAIPPNSTLVFDVEL 218
IP +AYG++G+ IPP S L+FD+E
Sbjct: 89 IPPELAYGDRGAGCKGGSCLIPPASVLLFDIEY 121
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
(MIP) {Trypanosoma cruzi [TaxId: 5693]}
Length = 160
Score = 71.0 bits (173), Expect = 3e-16
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
+ V+Y G+L+ ++ G EVIKGW L M+ G + R+ I
Sbjct: 51 AIDDKCEVHYTGRLRDGTVFDS--SRERGKPTTFRPNEVIKGWTEALQLMREGDRWRLFI 108
Query: 108 PAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
P +AYG G IPP S L FDVEL +I
Sbjct: 109 PYDLAYGVTGGGGMIPPYSPLEFDVELISI 138
Score = 70.2 bits (171), Expect = 5e-16
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 136 NISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHM 195
V+Y G+L+ ++ G EVIKGW L M+ G + R+ IP +
Sbjct: 55 KCEVHYTGRLRDGTVFDS--SRERGKPTTFRPNEVIKGWTEALQLMREGDRWRLFIPYDL 112
Query: 196 AYGNKGSPPAIPPNSTLVFDVELKNVN 222
AYG G IPP S L FDVEL ++
Sbjct: 113 AYGVTGGGGMIPPYSPLEFDVELISIK 139
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 68.6 bits (167), Expect = 1e-15
Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
+ + + V G K + ++ G + + M+ G + +
Sbjct: 25 NEGAIVEVALEGYYKDKLFDQR---ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYL 81
Query: 108 PAHMAYGNKGSPPA-IPPNSTLVFDVELKNI 137
A+G+ G IPPN+ L +++ LK+
Sbjct: 82 KPSYAFGSVGKEKFQIPPNAELKYELHLKSF 112
Score = 66.7 bits (162), Expect = 4e-15
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 137 ISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMA 196
+ V G K + ++ G + + M+ G + + A
Sbjct: 30 VEVALEGYYKDKLFDQR---ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYA 86
Query: 197 YGNKGSPPA-IPPNSTLVFDVELKNV 221
+G+ G IPPN+ L +++ LK+
Sbjct: 87 FGSVGKEKFQIPPNAELKYELHLKSF 112
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 67.1 bits (163), Expect = 3e-15
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 137 ISVYYVGKLKSNNQQFDS-------STQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRI 189
+ +Y G L+ + F++G G+VI+GWD L M G K R+
Sbjct: 23 VHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARL 82
Query: 190 TIPAHMAYGNKGSPPA-IPPNSTLVFDVELKNVN 222
I AYG KG P A IPPN+ L F+VEL +++
Sbjct: 83 EIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDID 116
Score = 67.1 bits (163), Expect = 3e-15
Identities = 36/98 (36%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 48 KKESNISVYYVGKL-------KSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVG 100
KK + +Y G L + F++G G+VI+GWD L M G
Sbjct: 18 KKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKG 77
Query: 101 GKRRITIPAHMAYGNKGSPPA-IPPNSTLVFDVELKNI 137
K R+ I AYG KG P A IPPN+ L F+VEL +I
Sbjct: 78 EKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI 115
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma
genitalium [TaxId: 2097]}
Length = 85
Score = 63.5 bits (154), Expect = 4e-14
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 53 ISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMA 112
+ + G + +NK+ S ++ +G IKG++ GL MKV K+ + +
Sbjct: 8 AIIDFTGIV--DNKKLAS-ASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD 64
Query: 113 YGNKGSPPAIPPNSTLVFDVELKNI 137
Y K + + F+V LK I
Sbjct: 65 YHVKE-----LQSKPVTFEVVLKAI 84
Score = 62.7 bits (152), Expect = 8e-14
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 137 ISVYYVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMA 196
+ + G + + + +S ++ +G IKG++ GL MKV K+ + +
Sbjct: 8 AIIDFTGIV---DNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD 64
Query: 197 YGNKGSPPAIPPNSTLVFDVELKNV 221
Y K + + F+V LK +
Sbjct: 65 YHVKE-----LQSKPVTFEVVLKAI 84
>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus
thermolithotrophicus [TaxId: 2186]}
Length = 151
Score = 50.2 bits (119), Expect = 1e-08
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSS--------------TQGPGFKFRLGKGEVIKGWDVG 93
K I V Y+GKL+ + FD+S + +F +G+G++I+G++
Sbjct: 3 DKGVKIKVDYIGKLE-SGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEA 61
Query: 94 LNGMKVGGKRRITIPAHMAYG--NKGSPPAIPPNSTLVFDVELKNISVYY 141
+ M+VG ++ + IPA AYG N+ IP ++ D E + V
Sbjct: 62 VLDMEVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKEADFEPEEGMVIL 111
>d1nlqa_ b.121.3.1 (A:) Chromatin decondensation protein 1 (Crp1,
Nlp) {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 105
Score = 37.2 bits (86), Expect = 2e-04
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 2 FWGFVLEPKKRYNT-------TVTKPFHISMAALDPKSITGKIHHIFLLSLSYKKESNIS 54
F+G L + T + I L ++ + + + + + + I+
Sbjct: 4 FYGVTLTAESDSVTWDVDEDYARGQKLVIKQILLGAEAKENEFNVVEVNTPKDSVQIPIA 63
Query: 55 VYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEV 86
V G+ ++ N + FK G G V
Sbjct: 64 VLKAGETRAVNPDVEFYESKVTFKLIKGSGPV 95
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia
coli [TaxId: 562]}
Length = 106
Score = 36.1 bits (83), Expect = 5e-04
Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
+ E +++ + G + + ++F+ F +G+G +I G++ G+ G K G + I +
Sbjct: 16 EAEDRVTIDFTGSV--DGEEFEGGK-ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDV 72
Query: 108 PAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
Y + F + LK +
Sbjct: 73 TFPEEYHAE-----NLKGKAAKFAINLKKV 97
Score = 35.3 bits (81), Expect = 0.001
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 141 YVGKLKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNK 200
+ G + + ++F+ F +G+G +I G++ G+ G K G + I + Y +
Sbjct: 25 FTGSV--DGEEFEGGK-ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAE 81
Query: 201 GSPPAIPPNSTLVFDVELKNV 221
F + LK V
Sbjct: 82 -----NLKGKAAKFAINLKKV 97
>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio
cholerae [TaxId: 666]}
Length = 113
Score = 35.6 bits (82), Expect = 0.001
Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 48 KKESNISVYYVGKLKSNNKQFDSSTQGPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITI 107
+ +S+ +VG + + +F+ F +G G +I G++ G+ G G + I +
Sbjct: 25 ENGKRVSIDFVGSI--DGVEFEGGK-AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDV 81
Query: 108 PAHMAYGNKGSPPAIPPNSTLVFDVELKNI 137
Y + F +++ +
Sbjct: 82 TFPEDYHAEN-----LKGKAAKFAIKVNKV 106
Score = 34.9 bits (80), Expect = 0.002
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 158 GPGFKFRLGKGEVIKGWDVGLNGMKVGGKRRITIPAHMAYGNKGSPPAIPPNSTLVFDVE 217
F +G G +I G++ G+ G G + I + Y + F ++
Sbjct: 48 AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN-----LKGKAAKFAIK 102
Query: 218 LKNV 221
+ V
Sbjct: 103 VNKV 106
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain
{Thermotoga maritima [TaxId: 2336]}
Length = 281
Score = 26.6 bits (59), Expect = 2.5
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
Query: 89 GWDVGLNGMKV---------GGKRRITIPAHMAYG 114
GW+V L+GM++ GG IP + YG
Sbjct: 126 GWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYG 160
Score = 26.6 bits (59), Expect = 2.5
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
Query: 173 GWDVGLNGMKV---------GGKRRITIPAHMAYG 198
GW+V L+GM++ GG IP + YG
Sbjct: 126 GWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYG 160
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.138 0.416
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 861,772
Number of extensions: 40253
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 40
Length of query: 222
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,281,736
Effective search space: 179443040
Effective search space used: 179443040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)