BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4027
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 19/86 (22%)
Query: 82 KATVHLSVK-SNNQQFDSS-TQGPGFKFRLGKGEVIKGWD-------VDEED-------- 124
K TVH + + +QFDSS ++G F+F LG GEVIKGWD + E+
Sbjct: 45 KVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQL 104
Query: 125 --GNKGSPPAIPPNSTLVFDVELKNV 148
G +G PP IPP +TLVF+VEL V
Sbjct: 105 AYGERGYPPVIPPKATLVFEVELLAV 130
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 20/103 (19%)
Query: 67 LNFIEGNTITLEVKGK-ATVHLS-VKSNNQQFDSS-TQGPGFKFRLGKGEVIKGWDV--- 120
+ G+ T G+ A VH + ++ + FDSS T+G F+F +G+GEVI+GWD
Sbjct: 6 VTLAAGDEATYPKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVA 65
Query: 121 --------------DEEDGNKGSPPAIPPNSTLVFDVELKNVN 149
D G++G P IPPN+TL FDVEL V
Sbjct: 66 QMSVGQRAKLVCSPDYAYGSRGHPGVIPPNATLTFDVELLRVE 108
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 45/86 (52%), Gaps = 19/86 (22%)
Query: 83 ATVHLS-VKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDVD-----------------EE 123
T+H + N Q+FDSS +G F+ +G G+VIKGWDV
Sbjct: 28 VTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYA 87
Query: 124 DGNKGSPPAIPPNSTLVFDVELKNVN 149
G +G P IPPNSTLVFDVEL VN
Sbjct: 88 YGPRGFPGLIPPNSTLVFDVELLKVN 113
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 40/72 (55%), Gaps = 18/72 (25%)
Query: 92 NNQQFDSST-QGPGFKFRLGKGEVIKGWDV-----------------DEEDGNKGSPPAI 133
+ +FDSS + F F LGKGEVIK WD+ + G+ GSPP I
Sbjct: 63 DGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKI 122
Query: 134 PPNSTLVFDVEL 145
PPN+TLVF+VEL
Sbjct: 123 PPNATLVFEVEL 134
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 40/72 (55%), Gaps = 18/72 (25%)
Query: 92 NNQQFDSST-QGPGFKFRLGKGEVIKGWDV-----------------DEEDGNKGSPPAI 133
+ +FDSS + F F LGKGEVIK WD+ + G+ GSPP I
Sbjct: 67 DGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKI 126
Query: 134 PPNSTLVFDVEL 145
PPN+TLVF+VEL
Sbjct: 127 PPNATLVFEVEL 138
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 40/72 (55%), Gaps = 18/72 (25%)
Query: 92 NNQQFDSST-QGPGFKFRLGKGEVIKGWDV-----------------DEEDGNKGSPPAI 133
+ +FDSS + F F LGKGEVIK WD+ + G+ GSPP I
Sbjct: 83 DGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKI 142
Query: 134 PPNSTLVFDVEL 145
PPN+TLVF+VEL
Sbjct: 143 PPNATLVFEVEL 154
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 40/72 (55%), Gaps = 18/72 (25%)
Query: 92 NNQQFDSS-TQGPGFKFRLGKGEVIKGWDV-----------------DEEDGNKGSPPAI 133
+ +FDSS + F F LGKGEVIK WD+ + G+ GSPP I
Sbjct: 62 DGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSPPKI 121
Query: 134 PPNSTLVFDVEL 145
PPN+TLVF+VEL
Sbjct: 122 PPNATLVFEVEL 133
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 20/97 (20%)
Query: 72 GNTITLEVKGKATV--HLSVKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDV-------- 120
G+ T KG+ V + + N ++FDSS + FKFR+GK EVIKG++
Sbjct: 10 GDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLG 69
Query: 121 ---------DEEDGNKGSPPAIPPNSTLVFDVELKNV 148
D G G P IPPN+TL+FDVEL N+
Sbjct: 70 QRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNL 106
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 18/78 (23%)
Query: 86 HLSVKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDV-----------------DEEDGNK 127
++ N +FDSS +G F F LG+G VIKGWD+ D G+
Sbjct: 40 YVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDA 99
Query: 128 GSPPAIPPNSTLVFDVEL 145
GSPP IP +TL+F+VEL
Sbjct: 100 GSPPKIPGGATLIFEVEL 117
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 19/89 (21%)
Query: 76 TLEVKGKATVHLS-VKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDV------------- 120
T EV + VH + + ++FDSS + FKF+LG+G+VIKGWD
Sbjct: 26 TPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALF 85
Query: 121 ----DEEDGNKGSPPAIPPNSTLVFDVEL 145
+ G GSPP IP N+TL FDVEL
Sbjct: 86 TIPPELAYGESGSPPTIPANATLQFDVEL 114
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 30/97 (30%)
Query: 71 EGNTITLEVKGK---ATVHLSVKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVDEEDGNK 127
EG +T+++ GK TV L + Q+ F+F+ + VI+G D + K
Sbjct: 262 EGAVVTVKITGKLQDGTVFLKKGHDEQE--------PFEFKTDEEAVIEGLDRAVLNMKK 313
Query: 128 GS------PPA-------------IPPNSTLVFDVEL 145
G PP +PPNST++++VEL
Sbjct: 314 GEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVEL 350
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 128 GSPPAIPPNSTLVFDVEL 145
G A+PPN++LV D+EL
Sbjct: 214 GEGGAVPPNASLVIDLEL 231
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 19/89 (21%)
Query: 76 TLEVKGKATVHLS-VKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDV------------- 120
T EV + VH + + ++FDSS + FKF+LG+G+VIKGWD
Sbjct: 42 TPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALF 101
Query: 121 ----DEEDGNKGSPPAIPPNSTLVFDVEL 145
+ G GSPP IP N+TL FDVEL
Sbjct: 102 TIPPELAYGESGSPPTIPANATLQFDVEL 130
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 30/97 (30%)
Query: 71 EGNTITLEVKGK---ATVHLSVKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVDEEDGNK 127
EG +T+++ GK TV L + Q+ F+F+ + VI+G D + K
Sbjct: 278 EGAVVTVKITGKLQDGTVFLKKGHDEQE--------PFEFKTDEEAVIEGLDRAVLNMKK 329
Query: 128 GS------PPA-------------IPPNSTLVFDVEL 145
G PP +PPNST++++VEL
Sbjct: 330 GEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVEL 366
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 128 GSPPAIPPNSTLVFDVEL 145
G A+PPN++LV D+EL
Sbjct: 230 GEGGAVPPNASLVIDLEL 247
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 50.4 bits (119), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 19/83 (22%)
Query: 82 KATVHLSVK-SNNQQFDSS-TQGPGFKFRLGKGEVIKGWDV-----------------DE 122
K VH K SN ++FDSS + F F LGKG+VIK WD+ +
Sbjct: 52 KVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEY 111
Query: 123 EDGNKGSPPAIPPNSTLVFDVEL 145
G+ GS P IP N+TL F++EL
Sbjct: 112 AYGSAGSLPKIPSNATLFFEIEL 134
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 24/92 (26%)
Query: 72 GNTITLEVKGKATVHLSVKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVDEED------ 124
GN +T+ GK ++S+ + FDSS + FKF LG+GEVIKGWD+
Sbjct: 36 GNEVTVHYVGK------LESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEK 89
Query: 125 -----------GNKGSPPAIPPNSTLVFDVEL 145
G +G +IP NS L+F++EL
Sbjct: 90 CSVRLDSKYGYGEEGCGESIPGNSVLIFEIEL 121
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 19/83 (22%)
Query: 82 KATVHLSVK-SNNQQFDSST-QGPGFKFRLGKGEVIKGWDV-----------------DE 122
K VH K SN ++FDSS + F F LGKG+VIK WD+ +
Sbjct: 56 KVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEY 115
Query: 123 EDGNKGSPPAIPPNSTLVFDVEL 145
G+ GS P IP N+TL F++EL
Sbjct: 116 AYGSAGSLPKIPSNATLFFEIEL 138
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 19/83 (22%)
Query: 82 KATVHLSVK-SNNQQFDSST-QGPGFKFRLGKGEVIKGWDV-----------------DE 122
K VH K SN ++FDSS + F F LGKG+VIK WD+ +
Sbjct: 40 KVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEY 99
Query: 123 EDGNKGSPPAIPPNSTLVFDVEL 145
G+ GS P IP N+TL F++EL
Sbjct: 100 AYGSAGSLPKIPSNATLFFEIEL 122
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 19/83 (22%)
Query: 82 KATVHLSVK-SNNQQFDSST-QGPGFKFRLGKGEVIKGWDV-----------------DE 122
K VH K SN ++FDSS + F F LGKG+VIK WD+ +
Sbjct: 40 KVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEY 99
Query: 123 EDGNKGSPPAIPPNSTLVFDVEL 145
G+ GS P IP N+TL F++EL
Sbjct: 100 AYGSAGSLPKIPSNATLFFEIEL 122
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 20/94 (21%)
Query: 72 GNTITLEVKGKATV--HLSVKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDV-------- 120
G+ T +G+ V + + + ++FDSS + FKF LGK EVI+GW+
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVG 69
Query: 121 ---------DEEDGNKGSPPAIPPNSTLVFDVEL 145
D G G P IPPN+TL+FDVEL
Sbjct: 70 QRAKLTISPDYAYGATGHPGIIPPNATLIFDVEL 103
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 19/83 (22%)
Query: 82 KATVHLSVK-SNNQQFDSST-QGPGFKFRLGKGEVIKGWDV-----------------DE 122
K VH K SN ++FDSS + F F LGKG+VIK WD+ +
Sbjct: 56 KVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEY 115
Query: 123 EDGNKGSPPAIPPNSTLVFDVEL 145
G+ GS P IP N+TL F++EL
Sbjct: 116 AYGSAGSLPKIPSNATLFFEIEL 138
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 20/94 (21%)
Query: 72 GNTITLEVKGKATV--HLSVKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDV-------- 120
G+ T +G+ V + + + ++FDSS + FKF LGK EVI+GW+
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 69
Query: 121 ---------DEEDGNKGSPPAIPPNSTLVFDVEL 145
D G G P IPP++TLVFDVEL
Sbjct: 70 QRAKLTISPDYAYGATGHPGIIPPHATLVFDVEL 103
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 20/94 (21%)
Query: 72 GNTITLEVKGKATV--HLSVKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDV-------- 120
G+ T +G+ V + + + ++FDSS + FKF LGK EVI+GW+
Sbjct: 12 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 71
Query: 121 ---------DEEDGNKGSPPAIPPNSTLVFDVEL 145
D G G P IPP++TLVFDVEL
Sbjct: 72 QRAKLTISPDYAYGATGHPGIIPPHATLVFDVEL 105
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 19/83 (22%)
Query: 82 KATVHLSVK-SNNQQFDSS-TQGPGFKFRLGKGEVIKGWDV-----------------DE 122
K VH K SN ++FDSS + F F LGKG+VIK WD+ +
Sbjct: 56 KVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEY 115
Query: 123 EDGNKGSPPAIPPNSTLVFDVEL 145
G+ GS P IP N+TL F++EL
Sbjct: 116 AYGSAGSLPKIPSNATLFFEIEL 138
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 20/94 (21%)
Query: 72 GNTITLEVKGKATV--HLSVKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDV-------- 120
G+ T +G+ V + + + ++FDSS + FKF LGK EVI+GW+
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 69
Query: 121 ---------DEEDGNKGSPPAIPPNSTLVFDVEL 145
D G G P IPP++TLVFDVEL
Sbjct: 70 QRAKLTISPDYAYGATGHPGIIPPHATLVFDVEL 103
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 20/94 (21%)
Query: 72 GNTITLEVKGKATV--HLSVKSNNQQFDSST-QGPGFKFRLGKGEVIKGW---------- 118
G+ T +G+ V + + + ++FDSS + FKF LGK EVI+GW
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQMSVG 69
Query: 119 -------DVDEEDGNKGSPPAIPPNSTLVFDVEL 145
D G G P IPP++TLVFDVEL
Sbjct: 70 QRAKLTISPDYAYGATGHPGIIPPHATLVFDVEL 103
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 20/94 (21%)
Query: 72 GNTITLEVKGKATV--HLSVKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDV-------- 120
G+ T +G+ V + + + ++FDSS + FKF LGK EVI+GW
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVG 69
Query: 121 ---------DEEDGNKGSPPAIPPNSTLVFDVEL 145
D G G P IPP++TLVFDVEL
Sbjct: 70 QRAKLTISPDYAYGATGHPGIIPPHATLVFDVEL 103
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 20/94 (21%)
Query: 72 GNTITLEVKGKATV--HLSVKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDV-------- 120
G+ T +G+ V + + + ++FDSS + FKF LGK EVI+GW+
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVG 69
Query: 121 ---------DEEDGNKGSPPAIPPNSTLVFDVEL 145
D G G P IPP++TLVFDVEL
Sbjct: 70 QRAKLTISPDYAYGATGVPGIIPPHATLVFDVEL 103
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 19/83 (22%)
Query: 82 KATVHLSVK-SNNQQFDSS-TQGPGFKFRLGKGEVIKGWDV-----------------DE 122
+ VH + K +N ++FDSS + F F +GKG+VIK WD+ +
Sbjct: 52 RVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCKPEY 111
Query: 123 EDGNKGSPPAIPPNSTLVFDVEL 145
G GS P IP N+TL F+VEL
Sbjct: 112 AYGATGSLPKIPSNATLFFEVEL 134
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 20/94 (21%)
Query: 72 GNTITLEVKGKATV--HLSVKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDV-------- 120
G+ T G+ V + + + ++FDSS + FKF LGK EVI+GW+
Sbjct: 10 GDGRTFPKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 69
Query: 121 ---------DEEDGNKGSPPAIPPNSTLVFDVEL 145
D G G P IPP++TLVFDVEL
Sbjct: 70 QRAKLTISPDYAYGATGHPGIIPPHATLVFDVEL 103
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 19/100 (19%)
Query: 68 NFIEGNTITLEVKGKATVHLS-VKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDVDEED- 124
+ EG+ +VH + ++ Q+FDSS + F F LG G VIKGWD +
Sbjct: 14 DLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHVIKGWDEGVQGM 73
Query: 125 ----------------GNKGSPPAIPPNSTLVFDVELKNV 148
G +G+ IPPN+TLVF+VEL +V
Sbjct: 74 KVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 113
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 19/100 (19%)
Query: 68 NFIEGNTITLEVKGKATVHLSV-KSNNQQFDSST-QGPGFKFRLGKGEVIKGWDVDEED- 124
+ EG+ +VH + ++ Q+FDSS + F F LG G VIKGWD +
Sbjct: 110 DLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGM 169
Query: 125 ----------------GNKGSPPAIPPNSTLVFDVELKNV 148
G +G+ IPPN+TLVF+VEL +V
Sbjct: 170 KVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLDV 209
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 19/100 (19%)
Query: 68 NFIEGNTITLEVKGKATVHLSV-KSNNQQFDSST-QGPGFKFRLGKGEVIKGWDVDEED- 124
+ EG+ +VH + ++ Q+FDSS + F F LG G VIKGWD +
Sbjct: 34 DLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGM 93
Query: 125 ----------------GNKGSPPAIPPNSTLVFDVELKNV 148
G +G+ IPPN+TLVF+VEL +V
Sbjct: 94 KVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 133
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 19/100 (19%)
Query: 68 NFIEGNTITLEVKGKATVHLSV-KSNNQQFDSST-QGPGFKFRLGKGEVIKGWDVDEED- 124
+ EG+ +VH + ++ Q+FDSS + F+F LG G VIKGWD +
Sbjct: 110 DLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMVIKGWDEGVQGM 169
Query: 125 ----------------GNKGSPPAIPPNSTLVFDVELKNV 148
G +G+ IPPN+TLVF+VEL +V
Sbjct: 170 KVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 19/100 (19%)
Query: 68 NFIEGNTITLEVKGKATVHLS-VKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDVDEED- 124
+ EG+ +VH + ++ Q+FDSS + F F LG G VIKGWD +
Sbjct: 18 DLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGM 77
Query: 125 ----------------GNKGSPPAIPPNSTLVFDVELKNV 148
G +G+ IPPN+TLVF+VEL +V
Sbjct: 78 KVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 117
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 20/94 (21%)
Query: 72 GNTITLEVKGKATV--HLSVKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDV-------- 120
G+ T +G+ V + + + ++ DSS + FKF LGK EVI+GW+
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 69
Query: 121 ---------DEEDGNKGSPPAIPPNSTLVFDVEL 145
D G G P IPP++TLVFDVEL
Sbjct: 70 QRAKLTISPDYAYGATGHPGIIPPHATLVFDVEL 103
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 19/100 (19%)
Query: 68 NFIEGNTITLEVKGKATVHLSV-KSNNQQFDSST-QGPGFKFRLGKGEVIKGWDVDEED- 124
+ EG+ +VH + ++ Q+FDSS + F F LG G VIKGWD +
Sbjct: 110 DLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGM 169
Query: 125 ----------------GNKGSPPAIPPNSTLVFDVELKNV 148
G +G+ IPPN+TLVF+VEL +V
Sbjct: 170 KVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 19/100 (19%)
Query: 68 NFIEGNTITLEVKGKATVHLSV-KSNNQQFDSST-QGPGFKFRLGKGEVIKGWDVDEED- 124
+ EG+ +VH + ++ Q+FDSS + F F LG G VIKGWD +
Sbjct: 110 DLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGM 169
Query: 125 ----------------GNKGSPPAIPPNSTLVFDVELKNV 148
G +G+ IPPN+TLVF+VEL +V
Sbjct: 170 KVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 18/76 (23%)
Query: 92 NNQQFDSST-QGPGFKFRLGKGEVIKGWD------VDEED-----------GNKGSPPAI 133
+ +FDSS Q F F LG G+VIKGWD + E G +G+PP I
Sbjct: 22 DGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKI 81
Query: 134 PPNSTLVFDVELKNVN 149
P +TLVF+VEL +
Sbjct: 82 PGGATLVFEVELLKIE 97
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 20/94 (21%)
Query: 72 GNTITLEVKGKATV--HLSVKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDV-------- 120
G+ T +G+ V + + + ++ DSS + FKF LGK EVI+GW+
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 69
Query: 121 ---------DEEDGNKGSPPAIPPNSTLVFDVEL 145
D G G P IPP++TLVFDVEL
Sbjct: 70 QRAKLTISPDYAYGATGHPGIIPPHATLVFDVEL 103
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 24/92 (26%)
Query: 72 GNTITLEVKGKATVHLSVKSNNQQFDSS-TQGPGFKFRLGKGEVIKGWDVDEED------ 124
GN +T+ GK ++S + FDSS + FKF L +GEVIKGWD+
Sbjct: 37 GNEVTVHYVGK------LESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEK 90
Query: 125 -----------GNKGSPPAIPPNSTLVFDVEL 145
G++G +IP NS L+F++EL
Sbjct: 91 CLVRIESMYGYGDEGCGESIPGNSVLLFEIEL 122
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 24/92 (26%)
Query: 72 GNTITLEVKGKATVHLSVKSNNQQFDSS-TQGPGFKFRLGKGEVIKGWDVDEED------ 124
GN +T+ GK ++S + FDSS + FKF L +GEVIKGWD+
Sbjct: 37 GNEVTVHYVGK------LESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEK 90
Query: 125 -----------GNKGSPPAIPPNSTLVFDVEL 145
G++G +IP NS L+F++EL
Sbjct: 91 CLVRIESMYGYGDEGCGESIPGNSVLLFEIEL 122
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 20/94 (21%)
Query: 72 GNTITLEVKGKATV--HLSVKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDV-------- 120
G+ T +G+ V + + + ++FDSS + FKF LGK EVI+G++
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQMSVG 69
Query: 121 ---------DEEDGNKGSPPAIPPNSTLVFDVEL 145
D G G P IPP++TLVFDVEL
Sbjct: 70 QRAKLTISPDYAYGATGHPGIIPPHATLVFDVEL 103
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 20/94 (21%)
Query: 72 GNTITLEVKGKATV--HLSVKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDV-------- 120
G+ T +G+ V + + + ++FDSS + FKF LGK EVI+G +
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLEEGVAQMSVG 69
Query: 121 ---------DEEDGNKGSPPAIPPNSTLVFDVEL 145
D G G P IPP++TLVFDVEL
Sbjct: 70 QRAKLTISPDYAYGATGHPGIIPPHATLVFDVEL 103
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 19/100 (19%)
Query: 68 NFIEGNTITLEVKGKATVHLS-VKSNNQQFDSST-QGPGFKFRLGKGEVIKGWDVDEEDG 125
+ EG+ +VH + ++ Q+FDSS + F F LG G VIKGWD +
Sbjct: 14 DLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGM 73
Query: 126 NKGS------PP-----------AIPPNSTLVFDVELKNV 148
G PP IPPN+TLVF+VEL +V
Sbjct: 74 KVGGVRRLTIPPQLGYGAGGAGGVIPPNATLVFEVELLDV 113
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 19/100 (19%)
Query: 68 NFIEGNTITLEVKGKATVHLSV-KSNNQQFDSST-QGPGFKFRLGKGEVIKGWDVDEED- 124
+ EG+ +VH + ++ Q+F SS + F F LG G VIKGWD +
Sbjct: 110 DLTEGSGAEARAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGM 169
Query: 125 ----------------GNKGSPPAIPPNSTLVFDVELKNV 148
G +G+ IPPN+TLVF+VEL +V
Sbjct: 170 KVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 29/82 (35%)
Query: 92 NNQQFDSS-TQGPGFKFRLGKGEVIKGWDV----------------------------DE 122
N + FDSS +G FR+G GEVIKGWD D
Sbjct: 43 NGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDR 102
Query: 123 EDGNKGSPPAIPPNSTLVFDVE 144
G KG IPP S L+FD+E
Sbjct: 103 GAGCKGGSCLIPPASVLLFDIE 124
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 18/61 (29%)
Query: 107 FRLGKGEVIKGWD---------------VDEE--DGNKGSPPA-IPPNSTLVFDVELKNV 148
F++G G+VI+GWD ++ E G KG P A IPPN+ L+F+VEL ++
Sbjct: 59 FKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118
Query: 149 N 149
+
Sbjct: 119 D 119
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 18/61 (29%)
Query: 107 FRLGKGEVIKGWD---------------VDEE--DGNKGSPPA-IPPNSTLVFDVELKNV 148
F++G G+VI+GWD ++ E G KG P A IPPN+ L F+VEL ++
Sbjct: 56 FKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI 115
Query: 149 N 149
+
Sbjct: 116 D 116
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 19/74 (25%)
Query: 92 NNQQFDSS-TQGPGFKFRLGKGEVIKGWDVD----------------EEDGNKGSPPAIP 134
+ ++FD+S T+G FRL VI GW E K P IP
Sbjct: 152 DGKEFDNSYTRGEPLSFRLDG--VIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIP 209
Query: 135 PNSTLVFDVELKNV 148
PNSTLVFDVEL +V
Sbjct: 210 PNSTLVFDVELLDV 223
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 35/75 (46%), Gaps = 19/75 (25%)
Query: 92 NNQQFDSS-TQGPGFKFRLGKGEVIKGWDVD----------------EEDGNKGSPPAIP 134
+ ++FD+S T+G FRL VI GW E K P IP
Sbjct: 152 DGKEFDNSYTRGEPLSFRLDG--VIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIP 209
Query: 135 PNSTLVFDVELKNVN 149
PNSTLVFDVEL +V
Sbjct: 210 PNSTLVFDVELLDVK 224
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 125 GNKGSPPAIPPNSTLVFDVEL 145
G G PP IPPN+T++F++EL
Sbjct: 109 GTLGCPPLIPPNTTVLFEIEL 129
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 16/59 (27%)
Query: 107 FRLGKGEVIKGWDVDEEDGNKGS------PPA----------IPPNSTLVFDVELKNVN 149
F LG E +KGWD + G PPA IPP STL+F+++L +
Sbjct: 64 FTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGKGKIPPESTLIFNIDLLEIR 122
>pdb|3PGB|A Chain A, Crystal Structure Of Aspergillus Nidulans Amine Oxidase
Length = 797
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 36 NEVSSLVLNVDGTETILCNLGKPNYLQERLDLNFIEGNTITLEVKGKATVHLSVKSNNQQ 95
+E S+ NV T + +G +Y+ NF TI +EV+ + + +NNQ
Sbjct: 462 SEFVSVTKNVYFTLRSVSTIGNXDYM---FSYNFHMDGTIGVEVRASGYIQSAYYANNQD 518
Query: 96 F 96
F
Sbjct: 519 F 519
>pdb|4FWW|A Chain A, Crystal Structure Of The Sema-Psi Extracellular Domains Of
Human Ron Receptor Tyrosine Kinase
Length = 527
Score = 27.7 bits (60), Expect = 2.2, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 86 HLSVKSNNQQFDSSTQGPGFKFRLGKGEVIKGW 118
HL S +Q F QGPG + L G ++ W
Sbjct: 467 HLLFASGDQVFQVPIQGPGCRHFLTCGRCLRAW 499
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 21/87 (24%)
Query: 82 KATVHLSVK-SNNQQFDSSTQ-GPGFKFRLGKGEVIKGWD-----------------VDE 122
K VH + + + FDSS + G FR EVIKGW D
Sbjct: 58 KCEVHYTGRLRDGTVFDSSRERGKPTTFR--PNEVIKGWTEALQLMREGDRWRLFIPYDL 115
Query: 123 EDGNKGSPPAIPPNSTLVFDVELKNVN 149
G G IPP S L FDVEL ++
Sbjct: 116 AYGVTGGGGMIPPYSPLEFDVELISIK 142
>pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|B Chain B, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|C Chain C, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|D Chain D, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
Length = 723
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 9 PKKRYNTTVTKPFHISMAALDPKSITDNEVSSLVLNVDGT 48
PK Y +++ M L P + TD L+L VDGT
Sbjct: 466 PKVEYRDIEIDDYNLPMQILKPATFTDTTHYPLLLVVDGT 505
>pdb|3DGT|A Chain A, The 1.5 A Crystal Structure Of Endo-1,3-Beta-Glucanase
From Streptomyces Sioyaensis
Length = 280
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 88 SVKSNNQQFDSSTQGPGFKFRLGKGEV 114
SV + N QFD+ T PG G GEV
Sbjct: 24 SVNTANWQFDTGTSYPGGAGNWGTGEV 50
>pdb|2P7J|A Chain A, Crystal Structure Of The Domain Of Putative Sensory
Box/ggdef Family Protein From Vibrio Parahaemolyticus
pdb|2P7J|B Chain B, Crystal Structure Of The Domain Of Putative Sensory
Box/ggdef Family Protein From Vibrio Parahaemolyticus
Length = 287
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 3 WGFVLEPKKRYNTTVTKPFHISMAALDPKSITDNEVSSLVLNVD 46
WG LE K + P S+ L P S+ D LVLNVD
Sbjct: 133 WGIELERDK---GELVYPLSPSLRILXPISVNDVRQGYLVLNVD 173
>pdb|2Y8N|A Chain A, Crystal Structure Of Glycyl Radical Enzyme
pdb|2Y8N|C Chain C, Crystal Structure Of Glycyl Radical Enzyme
pdb|2YAJ|A Chain A, Crystal Structure Of Glycyl Radical Enzyme With Bound
Substrate
pdb|2YAJ|C Chain C, Crystal Structure Of Glycyl Radical Enzyme With Bound
Substrate
Length = 897
Score = 26.2 bits (56), Expect = 7.1, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 21 FHISMAALDPKSITDNEVS-----SLVLNVDGTETILCNLGKP 58
FH+ +D K++ D +++ L++ V G C +GKP
Sbjct: 842 FHVQFNVVDSKTLRDAQLTPEKYRELMVRVAGFTQYWCEIGKP 884
>pdb|1C0M|A Chain A, Crystal Structure Of Rsv Two-Domain Integrase
pdb|1C0M|B Chain B, Crystal Structure Of Rsv Two-Domain Integrase
pdb|1C0M|C Chain C, Crystal Structure Of Rsv Two-Domain Integrase
pdb|1C0M|D Chain D, Crystal Structure Of Rsv Two-Domain Integrase
pdb|1C1A|A Chain A, Crystal Structure Of Rsv Two-Domain Integrase
pdb|1C1A|B Chain B, Crystal Structure Of Rsv Two-Domain Integrase
Length = 238
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 100 TQGPGFKFRLGKGEVIKGWDV 120
T+GP K R+ GE KGW+V
Sbjct: 171 TEGPPVKIRIETGEWEKGWNV 191
>pdb|2OWN|A Chain A, Crystal Structure Of Oleoyl Thioesterase (Putative)
(Np_784467.1) From Lactobacillus Plantarum At 2.00 A
Resolution
pdb|2OWN|B Chain B, Crystal Structure Of Oleoyl Thioesterase (Putative)
(Np_784467.1) From Lactobacillus Plantarum At 2.00 A
Resolution
Length = 262
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 14 NTTVTKPFHISMAALDPKSITDN 36
+TT+TKP+H+ +DP +N
Sbjct: 159 DTTITKPYHVRFFDIDPNRHVNN 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,766,168
Number of Sequences: 62578
Number of extensions: 189543
Number of successful extensions: 439
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 70
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)