Query psy4027
Match_columns 149
No_of_seqs 219 out of 1543
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 23:31:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 100.0 1.3E-28 2.9E-33 179.8 7.7 103 45-149 81-205 (205)
2 KOG0544|consensus 99.9 7E-27 1.5E-31 150.5 9.0 82 68-149 7-108 (108)
3 PRK11570 peptidyl-prolyl cis-t 99.9 1.6E-23 3.5E-28 156.0 7.5 102 46-149 83-206 (206)
4 KOG0549|consensus 99.9 5.2E-23 1.1E-27 147.7 9.4 89 61-149 68-176 (188)
5 TIGR03516 ppisom_GldI peptidyl 99.8 1.1E-20 2.3E-25 137.8 8.1 91 59-149 63-176 (177)
6 KOG0552|consensus 99.8 3.4E-20 7.3E-25 138.4 7.8 88 61-149 116-226 (226)
7 PRK10902 FKBP-type peptidyl-pr 99.8 4.3E-20 9.3E-25 142.4 7.3 101 46-149 127-249 (269)
8 PF00254 FKBP_C: FKBP-type pep 99.6 4.2E-16 9.1E-21 102.3 6.6 71 76-146 4-94 (94)
9 KOG0543|consensus 99.5 4.8E-14 1E-18 112.5 6.5 78 70-147 1-83 (397)
10 PRK15095 FKBP-type peptidyl-pr 99.3 4.8E-12 1E-16 90.7 5.9 47 76-122 4-52 (156)
11 KOG0543|consensus 99.3 1.3E-11 2.8E-16 98.8 7.4 78 69-149 91-190 (397)
12 PRK10737 FKBP-type peptidyl-pr 99.1 1.1E-10 2.4E-15 86.2 6.0 46 77-122 3-49 (196)
13 COG1047 SlpA FKBP-type peptidy 99.1 1.5E-10 3.2E-15 83.6 6.2 46 77-122 3-50 (174)
14 PF03066 Nucleoplasmin: Nucleo 98.7 1.4E-07 3E-12 67.1 8.7 88 1-91 5-105 (149)
15 TIGR00115 tig trigger factor. 97.8 8.4E-05 1.8E-09 60.8 7.2 73 76-149 146-230 (408)
16 PRK01490 tig trigger factor; P 97.5 0.00032 7E-09 57.8 6.5 73 76-149 157-241 (435)
17 COG0544 Tig FKBP-type peptidyl 97.2 0.00078 1.7E-08 55.8 6.1 72 77-149 158-241 (441)
18 KOG0545|consensus 94.7 0.028 6E-07 43.5 2.7 52 69-120 17-74 (329)
19 PF01346 FKBP_N: Domain amino 83.1 0.31 6.7E-06 33.1 -0.4 26 45-70 98-123 (124)
20 PF12690 BsuPI: Intracellular 38.8 37 0.0008 21.4 2.6 14 132-145 55-68 (82)
21 COG0303 MoeA Molybdopterin bio 38.8 23 0.0005 29.3 2.0 16 2-17 273-288 (404)
22 PF11012 DUF2850: Protein of u 38.0 29 0.00064 21.9 2.0 33 80-112 16-51 (79)
23 PF04314 DUF461: Protein of un 32.5 1.5E+02 0.0032 19.5 5.1 43 3-47 61-103 (110)
24 PF10633 NPCBM_assoc: NPCBM-as 28.9 1.3E+02 0.0028 18.2 3.9 54 80-145 4-58 (78)
25 KOG1527|consensus 26.8 60 0.0013 26.8 2.5 33 113-145 365-423 (506)
26 PF13464 DUF4115: Domain of un 24.4 1.7E+02 0.0038 17.7 4.6 41 2-52 21-61 (77)
27 PF09870 DUF2097: Uncharacteri 22.2 2.1E+02 0.0045 18.4 3.9 32 48-79 12-43 (86)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-28 Score=179.80 Aligned_cols=103 Identities=35% Similarity=0.522 Sum_probs=95.9
Q ss_pred eCCceeehhhcCCCCeeeeeeceEE---ecCCeeeeecCCEEEEEEEeec-CCceecCCC-CCCcEEEEecCCcccccce
Q psy4027 45 VDGTETILCNLGKPNYLQERLDLNF---IEGNTITLEVKGKATVHLSVKS-NNQQFDSST-QGPGFKFRLGKGEVIKGWD 119 (149)
Q Consensus 45 ~~~~~~~~~~l~~~~~~~~~~gl~~---~~G~g~~~~~~~~V~vhy~g~~-dG~~fdss~-~~~p~~f~lG~~~~i~G~~ 119 (149)
.++++|...+.++.++..+++||+| +.|+|..+..++.|.+||+|++ ||++||||+ +++|+.|.|| ++|+||+
T Consensus 81 ~~~~~f~~~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~ 158 (205)
T COG0545 81 AEGKAFLEKNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWD 158 (205)
T ss_pred HhHHHHHhhhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHH
Confidence 3556899999999999999999999 4999999999999999999999 999999999 8999999995 9999999
Q ss_pred ec-----------------ccccCCCCCCCCCCCCeEEEEEEEEEeC
Q psy4027 120 VD-----------------EEDGNKGSPPAIPPNSTLVFDVELKNVN 149 (149)
Q Consensus 120 ~~-----------------l~yg~~g~~~~ip~~~~l~f~iel~~i~ 149 (149)
+| ||||.+|.++.||||++|+|||||++|+
T Consensus 159 egl~~M~vG~k~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 159 EGLQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred HHHhhCCCCceEEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence 96 5999999887799999999999999985
No 2
>KOG0544|consensus
Probab=99.94 E-value=7e-27 Score=150.54 Aligned_cols=82 Identities=49% Similarity=0.785 Sum_probs=74.1
Q ss_pred EEecCCeeeee-cCCEEEEEEEeec-CCceecCCC-CCCcEEEEecCCcccccceec-----------------ccccCC
Q psy4027 68 NFIEGNTITLE-VKGKATVHLSVKS-NNQQFDSST-QGPGFKFRLGKGEVIKGWDVD-----------------EEDGNK 127 (149)
Q Consensus 68 ~~~~G~g~~~~-~~~~V~vhy~g~~-dG~~fdss~-~~~p~~f~lG~~~~i~G~~~~-----------------l~yg~~ 127 (149)
.+++|++..++ .+++|.+||+|.+ ||+.||||. ++.|+.|.+|.+++|+||+++ +|||.+
T Consensus 7 ~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~aYG~~ 86 (108)
T KOG0544|consen 7 VISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDYAYGPR 86 (108)
T ss_pred EeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeeccccccCCC
Confidence 35789996655 5557999999999 999999999 789999999999999999996 499999
Q ss_pred CCCCCCCCCCeEEEEEEEEEeC
Q psy4027 128 GSPPAIPPNSTLVFDVELKNVN 149 (149)
Q Consensus 128 g~~~~ip~~~~l~f~iel~~i~ 149 (149)
|.+..|||||+|+|||||++++
T Consensus 87 G~p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 87 GHPGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred CCCCccCCCcEEEEEEEEEecC
Confidence 9888999999999999999985
No 3
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.89 E-value=1.6e-23 Score=155.99 Aligned_cols=102 Identities=31% Similarity=0.460 Sum_probs=94.4
Q ss_pred CCceeehhhcCCCCeeeeeeceEE---ecCCeeeeecCCEEEEEEEeec-CCceecCCC-CCCcEEEEecCCccccccee
Q psy4027 46 DGTETILCNLGKPNYLQERLDLNF---IEGNTITLEVKGKATVHLSVKS-NNQQFDSST-QGPGFKFRLGKGEVIKGWDV 120 (149)
Q Consensus 46 ~~~~~~~~~l~~~~~~~~~~gl~~---~~G~g~~~~~~~~V~vhy~g~~-dG~~fdss~-~~~p~~f~lG~~~~i~G~~~ 120 (149)
.+++|+..+.++.++..+++||+| ++|+|..+..++.|.+||++++ ||++||||+ +++|+.|.+ +++|+||++
T Consensus 83 ~~~~fl~~~~k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l--~~vipG~~e 160 (206)
T PRK11570 83 EGVKFLEENAKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPV--NGVIPGWIE 160 (206)
T ss_pred HHHHHHHHhhhcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEe--echhhHHHH
Confidence 457899999999999999999999 4999999999999999999999 999999999 688999999 579999999
Q ss_pred c-----------------ccccCCCCCCCCCCCCeEEEEEEEEEeC
Q psy4027 121 D-----------------EEDGNKGSPPAIPPNSTLVFDVELKNVN 149 (149)
Q Consensus 121 ~-----------------l~yg~~g~~~~ip~~~~l~f~iel~~i~ 149 (149)
+ +|||.+|.++.||||++|+|+|||++|+
T Consensus 161 aL~~M~~G~k~~~~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 161 ALTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred HHcCCCCCCEEEEEECHHHcCCCCCCCCCcCCCCeEEEEEEEEEEC
Confidence 7 4999999887899999999999999985
No 4
>KOG0549|consensus
Probab=99.89 E-value=5.2e-23 Score=147.74 Aligned_cols=89 Identities=34% Similarity=0.595 Sum_probs=76.6
Q ss_pred eeeeeceEEe-cCCeeeeecCCEEEEEEEeec-CCceecCCC-CCCcEEEEecCCcccccceec----------------
Q psy4027 61 LQERLDLNFI-EGNTITLEVKGKATVHLSVKS-NNQQFDSST-QGPGFKFRLGKGEVIKGWDVD---------------- 121 (149)
Q Consensus 61 ~~~~~gl~~~-~G~g~~~~~~~~V~vhy~g~~-dG~~fdss~-~~~p~~f~lG~~~~i~G~~~~---------------- 121 (149)
..+..++.++ +.-......+|.+.+||+|.+ ||+.||||| +++|++|+||.+++|+|||++
T Consensus 68 ~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp 147 (188)
T KOG0549|consen 68 EELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPP 147 (188)
T ss_pred CceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCc
Confidence 3445555555 224456778889999999999 999999999 789999999999999999997
Q ss_pred -ccccCCCCCCCCCCCCeEEEEEEEEEeC
Q psy4027 122 -EEDGNKGSPPAIPPNSTLVFDVELKNVN 149 (149)
Q Consensus 122 -l~yg~~g~~~~ip~~~~l~f~iel~~i~ 149 (149)
||||++|.++.||++|+|+|||||++++
T Consensus 148 ~LgYG~~G~~~~IP~~A~LiFdiELv~i~ 176 (188)
T KOG0549|consen 148 HLGYGERGAPPKIPGDAVLIFDIELVKIE 176 (188)
T ss_pred cccCccCCCCCCCCCCeeEEEEEEEEEee
Confidence 5999999988899999999999999874
No 5
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.83 E-value=1.1e-20 Score=137.84 Aligned_cols=91 Identities=16% Similarity=0.251 Sum_probs=82.5
Q ss_pred CeeeeeeceEEe-----cCCeeeeecCCEEEEEEEeec-CCceecCCCCCCcEEEEecCCcccccceecc----------
Q psy4027 59 NYLQERLDLNFI-----EGNTITLEVKGKATVHLSVKS-NNQQFDSSTQGPGFKFRLGKGEVIKGWDVDE---------- 122 (149)
Q Consensus 59 ~~~~~~~gl~~~-----~G~g~~~~~~~~V~vhy~g~~-dG~~fdss~~~~p~~f~lG~~~~i~G~~~~l---------- 122 (149)
....+++|+.|. +|++..+..++.|.+||++++ ||++|++++...|+.|.+|.+++++||+++|
T Consensus 63 ~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~ 142 (177)
T TIGR03516 63 KYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETAT 142 (177)
T ss_pred CceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEE
Confidence 567789999883 478888999999999999999 9999999997679999999999999999974
Q ss_pred -------cccCCCCCCCCCCCCeEEEEEEEEEeC
Q psy4027 123 -------EDGNKGSPPAIPPNSTLVFDVELKNVN 149 (149)
Q Consensus 123 -------~yg~~g~~~~ip~~~~l~f~iel~~i~ 149 (149)
|||.+|.+..||||++|+|+|||++|+
T Consensus 143 ~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 143 FLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 999999887899999999999999985
No 6
>KOG0552|consensus
Probab=99.82 E-value=3.4e-20 Score=138.43 Aligned_cols=88 Identities=48% Similarity=0.687 Sum_probs=82.4
Q ss_pred eeeeeceEE---ecCCeeeeecCCEEEEEEEeec--CCceecCCCCCCcEE-EEecCCcccccceec-------------
Q psy4027 61 LQERLDLNF---IEGNTITLEVKGKATVHLSVKS--NNQQFDSSTQGPGFK-FRLGKGEVIKGWDVD------------- 121 (149)
Q Consensus 61 ~~~~~gl~~---~~G~g~~~~~~~~V~vhy~g~~--dG~~fdss~~~~p~~-f~lG~~~~i~G~~~~------------- 121 (149)
.+++.||+| +-|+|..+..+..|.+||.|++ +|++||+++.+.|+. |++|.++||+||+.+
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrvi 195 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRVI 195 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEEE
Confidence 578999999 5899999999999999999999 999999999889999 999999999999996
Q ss_pred ----ccccCCCCCCCCCCCCeEEEEEEEEEeC
Q psy4027 122 ----EEDGNKGSPPAIPPNSTLVFDVELKNVN 149 (149)
Q Consensus 122 ----l~yg~~g~~~~ip~~~~l~f~iel~~i~ 149 (149)
||||.+|.+ .||||++|+|+|||+.|+
T Consensus 196 IPp~lgYg~~g~~-~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 196 IPPELGYGKKGVP-EIPPNSTLVFDVELLSVK 226 (226)
T ss_pred eCccccccccCcC-cCCCCCcEEEEEEEEecC
Confidence 699999987 599999999999999875
No 7
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.81 E-value=4.3e-20 Score=142.39 Aligned_cols=101 Identities=32% Similarity=0.444 Sum_probs=92.2
Q ss_pred CCceeehhhcCCCCeeeeeeceEE---ecCCeeeeecCCEEEEEEEeec-CCceecCCC-CCCcEEEEecCCccccccee
Q psy4027 46 DGTETILCNLGKPNYLQERLDLNF---IEGNTITLEVKGKATVHLSVKS-NNQQFDSST-QGPGFKFRLGKGEVIKGWDV 120 (149)
Q Consensus 46 ~~~~~~~~~l~~~~~~~~~~gl~~---~~G~g~~~~~~~~V~vhy~g~~-dG~~fdss~-~~~p~~f~lG~~~~i~G~~~ 120 (149)
.+++|+..+.++.++..+++||+| ++|+|..+..+|.|.|||++++ ||++||+++ ++.|+.|.+ +++||||++
T Consensus 127 ~~~~fl~~~~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG~~E 204 (269)
T PRK10902 127 KGKKYREKFAKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTE 204 (269)
T ss_pred HHHHHHHHhccCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEec--CCcchHHHH
Confidence 457899999999999999999998 5999999999999999999999 999999999 688999999 579999999
Q ss_pred c-----------------ccccCCCCCCCCCCCCeEEEEEEEEEeC
Q psy4027 121 D-----------------EEDGNKGSPPAIPPNSTLVFDVELKNVN 149 (149)
Q Consensus 121 ~-----------------l~yg~~g~~~~ip~~~~l~f~iel~~i~ 149 (149)
+ ++||.+|.+ .||||++|+|+|+|++|+
T Consensus 205 aL~~Mk~Gek~~l~IP~~laYG~~g~~-gIppns~LvfeVeLl~V~ 249 (269)
T PRK10902 205 GLKNIKKGGKIKLVIPPELAYGKAGVP-GIPANSTLVFDVELLDVK 249 (269)
T ss_pred HHhcCCCCcEEEEEECchhhCCCCCCC-CCCCCCcEEEEEEEEEec
Confidence 6 489999875 599999999999999874
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.65 E-value=4.2e-16 Score=102.34 Aligned_cols=71 Identities=46% Similarity=0.761 Sum_probs=64.4
Q ss_pred eeecCCEEEEEEEeec-CCceecCCC-CCCcEEEEecCCcccccceec-----------------ccccCCCC-CCCCCC
Q psy4027 76 TLEVKGKATVHLSVKS-NNQQFDSST-QGPGFKFRLGKGEVIKGWDVD-----------------EEDGNKGS-PPAIPP 135 (149)
Q Consensus 76 ~~~~~~~V~vhy~g~~-dG~~fdss~-~~~p~~f~lG~~~~i~G~~~~-----------------l~yg~~g~-~~~ip~ 135 (149)
.+..++.|.+||++++ +|+.|++++ .+.|+.|.+|.+++|+||+++ ++||..+. ...|||
T Consensus 4 ~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip~ 83 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPKIPP 83 (94)
T ss_dssp SBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTBTT
T ss_pred cCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCCcCC
Confidence 3678899999999999 999999998 678999999999999999997 49999887 445999
Q ss_pred CCeEEEEEEEE
Q psy4027 136 NSTLVFDVELK 146 (149)
Q Consensus 136 ~~~l~f~iel~ 146 (149)
+++|+|+|+|+
T Consensus 84 ~~~l~f~Iell 94 (94)
T PF00254_consen 84 NSTLVFEIELL 94 (94)
T ss_dssp TSEEEEEEEEE
T ss_pred CCeEEEEEEEC
Confidence 99999999996
No 9
>KOG0543|consensus
Probab=99.49 E-value=4.8e-14 Score=112.53 Aligned_cols=78 Identities=49% Similarity=0.807 Sum_probs=68.6
Q ss_pred ecCCee-eeecCCEEEEEEEeec-CCceecCCCCCCcEEEEecCCcccccceeccc---ccCCCCCCCCCCCCeEEEEEE
Q psy4027 70 IEGNTI-TLEVKGKATVHLSVKS-NNQQFDSSTQGPGFKFRLGKGEVIKGWDVDEE---DGNKGSPPAIPPNSTLVFDVE 144 (149)
Q Consensus 70 ~~G~g~-~~~~~~~V~vhy~g~~-dG~~fdss~~~~p~~f~lG~~~~i~G~~~~l~---yg~~g~~~~ip~~~~l~f~ie 144 (149)
++|+|. .|..++.|.+||+|++ ||+.||||.++.|+.|.+|.+++|.||+.+.+ .|..++++.||++++|.|+|+
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~g~~~~pp~ip~~a~l~fe~e 80 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKKGEAGSPPKIPSNATLLFEVE 80 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCccccccccccccccccccCCCCCCCCCcceeeeec
Confidence 356665 5777779999999999 99999999998999999999999999999854 466778888999999999999
Q ss_pred EEE
Q psy4027 145 LKN 147 (149)
Q Consensus 145 l~~ 147 (149)
|+|
T Consensus 81 l~D 83 (397)
T KOG0543|consen 81 LLD 83 (397)
T ss_pred ccC
Confidence 864
No 10
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.30 E-value=4.8e-12 Score=90.67 Aligned_cols=47 Identities=23% Similarity=0.446 Sum_probs=42.7
Q ss_pred eeecCCEEEEEEEeec-CCceecCCC-CCCcEEEEecCCcccccceecc
Q psy4027 76 TLEVKGKATVHLSVKS-NNQQFDSST-QGPGFKFRLGKGEVIKGWDVDE 122 (149)
Q Consensus 76 ~~~~~~~V~vhy~g~~-dG~~fdss~-~~~p~~f~lG~~~~i~G~~~~l 122 (149)
.+..++.|.+||++++ ||++||||+ ++.|+.|.+|.+++++||+++|
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL 52 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQL 52 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHH
Confidence 3567788999999999 999999999 5799999999999999999974
No 11
>KOG0543|consensus
Probab=99.27 E-value=1.3e-11 Score=98.76 Aligned_cols=78 Identities=33% Similarity=0.585 Sum_probs=61.2
Q ss_pred EecCCe-ee-eecCCEEEEEEEeec-CCceecCCCCCCcEEEEecC-Ccccccceec-----------------ccccCC
Q psy4027 69 FIEGNT-IT-LEVKGKATVHLSVKS-NNQQFDSSTQGPGFKFRLGK-GEVIKGWDVD-----------------EEDGNK 127 (149)
Q Consensus 69 ~~~G~g-~~-~~~~~~V~vhy~g~~-dG~~fdss~~~~p~~f~lG~-~~~i~G~~~~-----------------l~yg~~ 127 (149)
+++|.+ .. |..+..|.|||.|++ ++ +|+++- ..+.|.+|+ .++|.||+.+ ||||+.
T Consensus 91 ir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~--~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~ 167 (397)
T KOG0543|consen 91 IREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRE--LRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEE 167 (397)
T ss_pred eecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccc--cceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCC
Confidence 468887 44 444446999999999 55 777763 348888887 4799999996 599944
Q ss_pred -CCCCCCCCCCeEEEEEEEEEeC
Q psy4027 128 -GSPPAIPPNSTLVFDVELKNVN 149 (149)
Q Consensus 128 -g~~~~ip~~~~l~f~iel~~i~ 149 (149)
+.++.||||++|.|+|||+++.
T Consensus 168 ~~~~p~IPPnA~l~yEVeL~~f~ 190 (397)
T KOG0543|consen 168 GGEPPLIPPNATLLYEVELLDFE 190 (397)
T ss_pred CCCCCCCCCCceEEEEEEEEeee
Confidence 5667899999999999999873
No 12
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.13 E-value=1.1e-10 Score=86.21 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=42.3
Q ss_pred eecCCEEEEEEEeec-CCceecCCCCCCcEEEEecCCcccccceecc
Q psy4027 77 LEVKGKATVHLSVKS-NNQQFDSSTQGPGFKFRLGKGEVIKGWDVDE 122 (149)
Q Consensus 77 ~~~~~~V~vhy~g~~-dG~~fdss~~~~p~~f~lG~~~~i~G~~~~l 122 (149)
+..++.|++||++++ ||++||+|+...|+.|.+|.++++|||+++|
T Consensus 3 I~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL 49 (196)
T PRK10737 3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETAL 49 (196)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCcchHHHHHHH
Confidence 456778999999999 9999999998889999999999999999975
No 13
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.5e-10 Score=83.59 Aligned_cols=46 Identities=20% Similarity=0.391 Sum_probs=42.4
Q ss_pred eecCCEEEEEEEeec-CCceecCCCC-CCcEEEEecCCcccccceecc
Q psy4027 77 LEVKGKATVHLSVKS-NNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVDE 122 (149)
Q Consensus 77 ~~~~~~V~vhy~g~~-dG~~fdss~~-~~p~~f~lG~~~~i~G~~~~l 122 (149)
+..++.|.+||++++ ||++||+|.. ..|+.|.+|.+++|+|+++||
T Consensus 3 i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al 50 (174)
T COG1047 3 IEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEAL 50 (174)
T ss_pred ccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHH
Confidence 456788999999999 9999999986 889999999999999999986
No 14
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=98.70 E-value=1.4e-07 Score=67.07 Aligned_cols=88 Identities=22% Similarity=0.291 Sum_probs=58.5
Q ss_pred CeeeEEECCCC-eEEecC-CC-----ceEEeeeeeCCCCCCCCceeEEEEee---CCc--eeehhhcCCCCeeeeeeceE
Q psy4027 1 MFWGFVLEPKK-RYNTTV-TK-----PFHISMAALDPKSITDNEVSSLVLNV---DGT--ETILCNLGKPNYLQERLDLN 68 (149)
Q Consensus 1 ~fwg~~~~~~~-~~~~~~-~~-----~~~is~a~l~~~~~~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~gl~ 68 (149)
+|||++|+.+| .|++.+ +. .++|++|||+..+++ +.. .|.+.. +++ ++.+++|+.+...++++|+.
T Consensus 5 ~~wGceL~~~k~~~~f~~~~~d~~~h~L~L~~v~Lga~AKd-E~~-vVe~e~~~~eg~~~kv~lAtLk~s~~~~vsL~~~ 82 (149)
T PF03066_consen 5 YFWGCELKADKKDYTFKVDDNDENEHQLSLRQVCLGAGAKD-ELN-VVEVEAMNYEGKPIKVPLATLKMSVQPMVSLDGF 82 (149)
T ss_dssp EEEEEEEBSTB-EEEE-TTSSSSSCEEEEEEEEEE-TTS-S-SEE-EEEEEEEBTTSCEEEEEEEEEBTTTBSEEEEEEE
T ss_pred EEEEEEEcCCCceEEEeCCCCCCcccEEEEEEeecCCCccC-cee-EEEEEeccCCCCeeEEEEEEecCCccceEEcCCc
Confidence 49999999999 899999 22 399999999998654 443 555543 555 89999999998888888765
Q ss_pred EecCCeeeee-cCCEEEEEEEeec
Q psy4027 69 FIEGNTITLE-VKGKATVHLSVKS 91 (149)
Q Consensus 69 ~~~G~g~~~~-~~~~V~vhy~g~~ 91 (149)
+-.. .+.+. ..+.-.||.+|+.
T Consensus 83 ~~~p-pVtf~L~~GsGPVhisG~~ 105 (149)
T PF03066_consen 83 EITP-PVTFRLKCGSGPVHISGQH 105 (149)
T ss_dssp EESS-SEEEEEEESSS-EEEEEEE
T ss_pred ccCC-CEEEEEEecCCCEEeeCcc
Confidence 5322 22222 2233335666653
No 15
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=97.79 E-value=8.4e-05 Score=60.76 Aligned_cols=73 Identities=19% Similarity=0.362 Sum_probs=57.2
Q ss_pred eeecCCEEEEEEEeecCCceecCCCCCCcEEEEecCCcccccceecccccCCCCCCC----C--------CCCCeEEEEE
Q psy4027 76 TLEVKGKATVHLSVKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVDEEDGNKGSPPA----I--------PPNSTLVFDV 143 (149)
Q Consensus 76 ~~~~~~~V~vhy~g~~dG~~fdss~~~~p~~f~lG~~~~i~G~~~~l~yg~~g~~~~----i--------p~~~~l~f~i 143 (149)
.+..++.|.++|+++.||..|+++. ..++.|.+|.+.+++||+++|.--..|..-. . -++.++.|.|
T Consensus 146 ~~~~gD~V~v~~~~~~dg~~~~~~~-~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~~gk~~~f~v 224 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFIDGEAFEGGK-AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEELAGKEATFKV 224 (408)
T ss_pred ccCCCCEEEEEEEEEECCEECcCCC-CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccCCCCeEEEEE
Confidence 4577889999999988999998874 4689999999999999999875444443210 1 2578999999
Q ss_pred EEEEeC
Q psy4027 144 ELKNVN 149 (149)
Q Consensus 144 el~~i~ 149 (149)
+|.+|+
T Consensus 225 ~i~~I~ 230 (408)
T TIGR00115 225 TVKEVK 230 (408)
T ss_pred EEEEec
Confidence 999874
No 16
>PRK01490 tig trigger factor; Provisional
Probab=97.47 E-value=0.00032 Score=57.81 Aligned_cols=73 Identities=21% Similarity=0.417 Sum_probs=57.1
Q ss_pred eeecCCEEEEEEEeecCCceecCCCCCCcEEEEecCCcccccceecccccCCCCCC----CCC--------CCCeEEEEE
Q psy4027 76 TLEVKGKATVHLSVKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVDEEDGNKGSPP----AIP--------PNSTLVFDV 143 (149)
Q Consensus 76 ~~~~~~~V~vhy~g~~dG~~fdss~~~~p~~f~lG~~~~i~G~~~~l~yg~~g~~~----~ip--------~~~~l~f~i 143 (149)
.+..+|.|.++|+++.||..|+++. ..++.|.+|.+++++||+++|.--..|..- ..| ++.+..|.|
T Consensus 157 ~~~~gD~V~vd~~~~~~g~~~~~~~-~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~lagk~~~f~v 235 (435)
T PRK01490 157 PAENGDRVTIDFVGSIDGEEFEGGK-AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDLAGKEATFKV 235 (435)
T ss_pred cCCCCCEEEEEEEEEECCEECcCCC-CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccCCCCeEEEEE
Confidence 3678889999999999999998764 458999999999999999987544544321 122 467899999
Q ss_pred EEEEeC
Q psy4027 144 ELKNVN 149 (149)
Q Consensus 144 el~~i~ 149 (149)
+|.+|+
T Consensus 236 ~v~~V~ 241 (435)
T PRK01490 236 TVKEVK 241 (435)
T ss_pred EEEEec
Confidence 999874
No 17
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00078 Score=55.83 Aligned_cols=72 Identities=21% Similarity=0.434 Sum_probs=57.4
Q ss_pred eecCCEEEEEEEeecCCceecCCCCCCcEEEEecCCcccccceecccccCCCCCC----CCC--------CCCeEEEEEE
Q psy4027 77 LEVKGKATVHLSVKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVDEEDGNKGSPP----AIP--------PNSTLVFDVE 144 (149)
Q Consensus 77 ~~~~~~V~vhy~g~~dG~~fdss~~~~p~~f~lG~~~~i~G~~~~l~yg~~g~~~----~ip--------~~~~l~f~ie 144 (149)
...+|.|+|.|.|+.||..|...- .+-+.+.||.+++||||+.+|---+.|..- ..| ++....|.|+
T Consensus 158 a~~gD~v~IDf~g~iDg~~fegg~-ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~LaGK~a~F~V~ 236 (441)
T COG0544 158 AENGDRVTIDFEGSVDGEEFEGGK-AENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEELAGKEATFKVK 236 (441)
T ss_pred cccCCEEEEEEEEEEcCeeccCcc-ccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHhCCCceEEEEE
Confidence 788999999999988999888753 346899999999999999998555555431 134 5778899999
Q ss_pred EEEeC
Q psy4027 145 LKNVN 149 (149)
Q Consensus 145 l~~i~ 149 (149)
|..|+
T Consensus 237 vkeVk 241 (441)
T COG0544 237 VKEVK 241 (441)
T ss_pred EEEEe
Confidence 98773
No 18
>KOG0545|consensus
Probab=94.70 E-value=0.028 Score=43.47 Aligned_cols=52 Identities=15% Similarity=0.279 Sum_probs=41.0
Q ss_pred EecCCee--eeecCCEEEEEEEeec---CCceecCCC-CCCcEEEEecCCccccccee
Q psy4027 69 FIEGNTI--TLEVKGKATVHLSVKS---NNQQFDSST-QGPGFKFRLGKGEVIKGWDV 120 (149)
Q Consensus 69 ~~~G~g~--~~~~~~~V~vhy~g~~---dG~~fdss~-~~~p~~f~lG~~~~i~G~~~ 120 (149)
+..|.|. .+..|..+.+||.... .++++|+|. .|+|....+|.---++-|+.
T Consensus 17 l~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~ 74 (329)
T KOG0545|consen 17 LHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEI 74 (329)
T ss_pred ccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHH
Confidence 3456654 4566668999999976 578999998 79999999987666777887
No 19
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=83.11 E-value=0.31 Score=33.06 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=21.6
Q ss_pred eCCceeehhhcCCCCeeeeeeceEEe
Q psy4027 45 VDGTETILCNLGKPNYLQERLDLNFI 70 (149)
Q Consensus 45 ~~~~~~~~~~l~~~~~~~~~~gl~~~ 70 (149)
.++++|+..+.++.++.++++||+|+
T Consensus 98 ~~~~~fla~n~k~~GV~~t~SGLqY~ 123 (124)
T PF01346_consen 98 AEGEAFLAENAKKEGVKTTESGLQYK 123 (124)
T ss_dssp HHHHHHHHHHHTSTTEEE-TTS-EEE
T ss_pred HHHHHHHHHHcCCCCCEECCCCCeee
Confidence 35689999999999999999999996
No 20
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=38.85 E-value=37 Score=21.39 Aligned_cols=14 Identities=14% Similarity=0.518 Sum_probs=9.4
Q ss_pred CCCCCCeEEEEEEE
Q psy4027 132 AIPPNSTLVFDVEL 145 (149)
Q Consensus 132 ~ip~~~~l~f~iel 145 (149)
.|+|+.+++|+.++
T Consensus 55 ~l~pGe~~~~~~~~ 68 (82)
T PF12690_consen 55 TLEPGESLTYEETW 68 (82)
T ss_dssp EE-TT-EEEEEEEE
T ss_pred EECCCCEEEEEEEE
Confidence 37888888888776
No 21
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=38.76 E-value=23 Score=29.33 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=13.9
Q ss_pred eeeEEECCCCeEEecC
Q psy4027 2 FWGFVLEPKKRYNTTV 17 (149)
Q Consensus 2 fwg~~~~~~~~~~~~~ 17 (149)
|||+-|+|||+..+-.
T Consensus 273 ~~gia~kPGkP~~~g~ 288 (404)
T COG0303 273 FHGVAMKPGKPTGLGR 288 (404)
T ss_pred EEeeeecCCCceEEEE
Confidence 9999999999877654
No 22
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=37.96 E-value=29 Score=21.93 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=22.5
Q ss_pred CCEEEEEEEeec-CCceecCCC--CCCcEEEEecCC
Q psy4027 80 KGKATVHLSVKS-NNQQFDSST--QGPGFKFRLGKG 112 (149)
Q Consensus 80 ~~~V~vhy~g~~-dG~~fdss~--~~~p~~f~lG~~ 112 (149)
.+...+.=.|-. +|.++.++| +|.-+++.+|.+
T Consensus 16 ~e~~~l~~~GV~~ngrlV~T~F~fDG~~l~~~~G~~ 51 (79)
T PF11012_consen 16 AEEFTLNESGVFRNGRLVATSFEFDGKTLEYRTGSG 51 (79)
T ss_pred ccEEEECCCcEEECCCEEeeEEEECCCEEEEEECCe
Confidence 344555555655 777777776 788888888765
No 23
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=32.49 E-value=1.5e+02 Score=19.50 Aligned_cols=43 Identities=12% Similarity=0.167 Sum_probs=25.9
Q ss_pred eeEEECCCCeEEecCCCceEEeeeeeCCCCCCCCceeEEEEeeCC
Q psy4027 3 WGFVLEPKKRYNTTVTKPFHISMAALDPKSITDNEVSSLVLNVDG 47 (149)
Q Consensus 3 wg~~~~~~~~~~~~~~~~~~is~a~l~~~~~~~~~~~~~~~~~~~ 47 (149)
.++.|.||....+... ..||-.--+......++.+ .+.+..++
T Consensus 61 ~~i~ipa~~~v~l~pg-g~HlmL~g~~~~l~~G~~v-~ltL~f~~ 103 (110)
T PF04314_consen 61 DSIPIPAGSTVELKPG-GYHLMLMGLKRPLKPGDTV-PLTLTFED 103 (110)
T ss_dssp S-EEEETT-EEEE-CC-CCEEEEECESS-B-TTEEE-EEEEEETT
T ss_pred CCEEECCCCeEEecCC-CEEEEEeCCcccCCCCCEE-EEEEEECC
Confidence 4677888887777333 4788766666666677777 66666655
No 24
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=28.94 E-value=1.3e+02 Score=18.18 Aligned_cols=54 Identities=19% Similarity=0.454 Sum_probs=23.4
Q ss_pred CCEEEEEEEeecCCc-eecCCCCCCcEEEEecCCcccccceecccccCCCCCCCCCCCCeEEEEEEE
Q psy4027 80 KGKATVHLSVKSNNQ-QFDSSTQGPGFKFRLGKGEVIKGWDVDEEDGNKGSPPAIPPNSTLVFDVEL 145 (149)
Q Consensus 80 ~~~V~vhy~g~~dG~-~fdss~~~~p~~f~lG~~~~i~G~~~~l~yg~~g~~~~ip~~~~l~f~iel 145 (149)
++.+.+.++..++|. ... .+.+.+ .+..||. ...+..... .+||+++..+.++|
T Consensus 4 G~~~~~~~tv~N~g~~~~~------~v~~~l---~~P~GW~--~~~~~~~~~-~l~pG~s~~~~~~V 58 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLT------NVSLSL---SLPEGWT--VSASPASVP-SLPPGESVTVTFTV 58 (78)
T ss_dssp TEEEEEEEEEE--SSS-BS------S-EEEE---E--TTSE-----EEEEE---B-TTSEEEEEEEE
T ss_pred CCEEEEEEEEEECCCCcee------eEEEEE---eCCCCcc--ccCCccccc-cCCCCCEEEEEEEE
Confidence 445566666665442 121 255555 4578999 222221111 47888777766665
No 25
>KOG1527|consensus
Probab=26.79 E-value=60 Score=26.75 Aligned_cols=33 Identities=45% Similarity=0.729 Sum_probs=23.8
Q ss_pred cccccceecc-----------------------cccCCCCCCCCC---CCCeEEEEEEE
Q psy4027 113 EVIKGWDVDE-----------------------EDGNKGSPPAIP---PNSTLVFDVEL 145 (149)
Q Consensus 113 ~~i~G~~~~l-----------------------~yg~~g~~~~ip---~~~~l~f~iel 145 (149)
++|||+..+| +-|.+|..+.|| |..+.+|-.-|
T Consensus 365 ~ViPGIssal~~~~~agIP~ThRgvAdqvl~cTGtgrKG~~p~ip~fvp~~TtVflMaL 423 (506)
T KOG1527|consen 365 QVIPGISSALGIAAEAGIPLTHRGVADQVLFCTGTGRKGGTPAIPAFVPDTTTVFLMAL 423 (506)
T ss_pred EeccchhhhhhhhHhcCCCcccccccceEEEEeccCCCCCCCCccccCCCceeEeeehh
Confidence 4799998864 667778777777 56778876554
No 26
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=24.35 E-value=1.7e+02 Score=17.67 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=25.9
Q ss_pred eeeEEECCCCeEEecCCCceEEeeeeeCCCCCCCCceeEEEEeeCCceeeh
Q psy4027 2 FWGFVLEPKKRYNTTVTKPFHISMAALDPKSITDNEVSSLVLNVDGTETIL 52 (149)
Q Consensus 2 fwg~~~~~~~~~~~~~~~~~~is~a~l~~~~~~~~~~~~~~~~~~~~~~~~ 52 (149)
.+.-.++||..++....+.|+|. ++.+ +.+.+..+++.+-.
T Consensus 21 ~~~~~l~~G~~~~~~~~~~~~i~---iGna-------~~v~v~~nG~~~~~ 61 (77)
T PF13464_consen 21 LFSGTLKAGETKTFEGKEPFRIR---IGNA-------GAVEVTVNGKPVDL 61 (77)
T ss_pred eeeeeeCCCcEEEEeCCCCEEEE---EeCC-------CcEEEEECCEECCC
Confidence 34567788998888777777764 2321 14566667766444
No 27
>PF09870 DUF2097: Uncharacterized protein conserved in archaea (DUF2097); InterPro: IPR019208 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.19 E-value=2.1e+02 Score=18.43 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=26.1
Q ss_pred ceeehhhcCCCCeeeeeeceEEecCCeeeeec
Q psy4027 48 TETILCNLGKPNYLQERLDLNFIEGNTITLEV 79 (149)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~gl~~~~G~g~~~~~ 79 (149)
-+|+..+.+.+......-|..+-+|+-.....
T Consensus 12 ~eYi~~nV~e~D~lEisygRv~vpG~V~~~~~ 43 (86)
T PF09870_consen 12 IEYIKNNVKEGDYLEISYGRVHVPGEVLSIED 43 (86)
T ss_pred HHHHHhcCCCCCEEEEEeeEEEeeeEEEEeee
Confidence 47888899999999999999998888765444
Done!