RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4027
(149 letters)
>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase.
Length = 94
Score = 57.6 bits (140), Expect = 6e-12
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 20/85 (23%)
Query: 82 KATVHLSVK-SNNQQFDSS-TQGPGFKFRLGKGEVIKGWDV-----------------DE 122
TVH + K + FDSS +G F+F LG G+VI GWD +
Sbjct: 10 TVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEKRKLTIPPEL 69
Query: 123 EDGNKGS-PPAIPPNSTLVFDVELK 146
G +G IPPN+TLVF+VEL
Sbjct: 70 AYGEEGLAGGVIPPNATLVFEVELL 94
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1
[Posttranslational modification, protein turnover,
chaperones].
Length = 205
Score = 59.0 bits (143), Expect = 1e-11
Identities = 34/96 (35%), Positives = 43/96 (44%), Gaps = 27/96 (28%)
Query: 72 GNTITLEVKGKATVHLSVKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWD-------VDEE 123
G+T+T+ G + FDSS G +F LG VI GWD V +
Sbjct: 119 GDTVTVHYTGTLI-------DGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGK 169
Query: 124 D----------GNKGSPPAIPPNSTLVFDVELKNVN 149
G +G P IPPNSTLVF+VEL +V
Sbjct: 170 RKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK 205
>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase;
Provisional.
Length = 269
Score = 40.9 bits (96), Expect = 7e-05
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 19/73 (26%)
Query: 94 QQFDSS-TQGPGFKFRLGKGEVIKGWDVDEEDGNKGS------PPA----------IPPN 136
++FD+S T+G FRL VI GW ++ KG PP IP N
Sbjct: 179 KEFDNSYTRGEPLSFRLDG--VIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIPAN 236
Query: 137 STLVFDVELKNVN 149
STLVFDVEL +V
Sbjct: 237 STLVFDVELLDVK 249
>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase;
Provisional.
Length = 206
Score = 34.0 bits (78), Expect = 0.016
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 125 GNKGSPPAIPPNSTLVFDVEL 145
G +G+ +IPP STLVF+VEL
Sbjct: 182 GERGAGASIPPFSTLVFEVEL 202
>gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional.
Length = 321
Score = 30.9 bits (70), Expect = 0.19
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 39 SSLVLNVDGTETILCNLGKPNYLQERLDLNFIEGNTITLEVKGKATV 85
S +LN G +T++ L + + L ERL +F+ I L +GK V
Sbjct: 2 SEALLNA-GRQTLMLELQEASRLPERLGDDFVRAANIILHCEGKVVV 47
>gnl|CDD|171440 PRK12365, PRK12365, ribonucleotide-diphosphate reductase subunit
alpha; Provisional.
Length = 1046
Score = 27.6 bits (61), Expect = 2.9
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 36 NEVSSLVLNVDGTETILCNLGKPNYLQERLDLNFIE---GNTITLEVK 80
N + ++LN TET +CNLG N ++ ++ E TI++ ++
Sbjct: 669 NLCTEILLNCSETETAVCNLGSINLVEHIVNDGLDEEKLSETISIAIR 716
>gnl|CDD|236222 PRK08292, PRK08292, AMP nucleosidase; Provisional.
Length = 489
Score = 27.1 bits (61), Expect = 3.6
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 3 WGFVLEPKKRYNTTVTKP 20
+G V P Y+TTVT+P
Sbjct: 76 YGRVAHPG-VYSTTVTRP 92
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic
proteinase superfamily. Fungal Proteinase A, a
proteolytic enzyme distributed among a variety of
organisms, is a member of the aspartic proteinase
superfamily. In Saccharomyces cerevisiae, targeted to
the vacuole as a zymogen, activation of proteinases A at
acidic pH can occur by two different pathways: a
one-step process to release mature proteinase A,
involving the intervention of proteinase B, or a
step-wise pathway via the auto-activation product known
as pseudo-proteinase A. Once active, S. cerevisiae
proteinase A is essential to the activities of other
yeast vacuolar hydrolases, including proteinase B and
carboxypeptidase Y. The mature enzyme is bilobal, with
each lobe providing one of the two catalytically
essential aspartic acid residues in the active site. The
crystal structure of free proteinase A shows that flap
loop is atypically pointing directly into the S(1)
pocket of the enzyme. Proteinase A preferentially
hydrolyzes hydrophobic residues such as Phe, Leu or Glu
at the P1 position and Phe, Ile, Leu or Ala at P1'.
Moreover, the enzyme is inhibited by IA3, a natural and
highly specific inhibitor produced by S. cerevisiae.
This family of aspartate proteases is classified by
MEROPS as the peptidase family A1 (pepsin A, clan AA).
Length = 320
Score = 26.6 bits (59), Expect = 5.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 92 NNQQFDSSTQGPGFKFRLGKGEVIKGWDVDEEDGNKGSPP 131
Q F +T PG F GK + I G D NK PP
Sbjct: 94 KKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPP 133
>gnl|CDD|112259 pfam03434, DUF276, DUF276. This family is specific to Borrelia
burgdorferi. The protein is encoded on extra-chromosomal
DNA. This domain has no known function.
Length = 291
Score = 26.8 bits (59), Expect = 5.1
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Query: 28 LDPKSITDNEVSSLVLNVDGTE--TILCNLGKPNY---LQERLDLNFIEGNTITLEVKGK 82
+ KS T + V + +LN++G E I GK N L+E L L + N E K K
Sbjct: 82 ISSKSTTYSAVRNALLNLEGIEHINIKSGAGKANIYLILKEDL-LQTQKKNINKPEFKAK 140
Query: 83 --ATVHLSVKSNN--------QQFDSSTQGPGFKFRLGK 111
T++L+ S +S+ Q +K LGK
Sbjct: 141 IWETLYLTTPSGTLLEGDIEIDGLNSTGQKKSYKISLGK 179
>gnl|CDD|220746 pfam10423, AMNp_N, Bacterial AMP nucleoside phosphorylase
N-terminus. This is the N-terminal domain of bacterial
AMP nucleoside phosphorylase (AMNp). The N- and
C-termini form distinct domains which intertwine with
each other to form a stable monomer which associates
with five other monomers to yield the active hexamer.
The N-terminus consists of a long helix and a
four-stranded sheet with a novel topology. The
C-terminus binds the nucleoside whereas the N-terminus
acts as the enzymatic regulatory domain. AMNp
(EC:3.2.2.4) catalyzes the hydrolysis of AMP to form
adenine and ribose 5-phosphate. thereby regulating
intracellular AMP levels.
Length = 160
Score = 26.4 bits (59), Expect = 5.6
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 3 WGFVLEPKKRYNTTVTKP 20
+G V P Y TTVT+P
Sbjct: 59 FGHVARPG-TYATTVTRP 75
>gnl|CDD|183587 PRK12550, PRK12550, shikimate 5-dehydrogenase; Reviewed.
Length = 272
Score = 26.1 bits (58), Expect = 7.8
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 10/32 (31%)
Query: 49 ETILC-NL-GKP--------NYLQERLDLNFI 70
+T LC +L +P NYL E L LNF+
Sbjct: 8 DTQLCISLAARPSNFGTRFHNYLYEALGLNFL 39
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.134 0.394
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,337,911
Number of extensions: 621446
Number of successful extensions: 353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 18
Length of query: 149
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 61
Effective length of database: 7,034,450
Effective search space: 429101450
Effective search space used: 429101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.4 bits)