RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4027
(149 letters)
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae}
SCOP: d.26.1.1
Length = 113
Score = 82.6 bits (205), Expect = 1e-21
Identities = 41/99 (41%), Positives = 50/99 (50%), Gaps = 20/99 (20%)
Query: 71 EGNTITLEVKG-KATVHLSVK-SNNQQFDSSTQ-GPGFKFRLGKGEVIKGWD-------V 120
G+ T G T+H + N Q+FDSS G F+ +G G+VIKGWD V
Sbjct: 15 PGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSV 74
Query: 121 DEED----------GNKGSPPAIPPNSTLVFDVELKNVN 149
E+ G +G P IPPNSTLVFDVEL VN
Sbjct: 75 GEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKVN 113
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5;
2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A*
3ni6_A 3pa7_A
Length = 129
Score = 82.3 bits (204), Expect = 2e-21
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 20/88 (22%)
Query: 82 KATVH--LSVKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWD-------VDEED------- 124
+ TVH ++S + FDSS FKF L +GEVIKGWD +E+
Sbjct: 39 EVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESM 98
Query: 125 ---GNKGSPPAIPPNSTLVFDVELKNVN 149
G++G +IP NS L+F++EL +
Sbjct: 99 YGYGDEGCGESIPGNSVLLFEIELLSFR 126
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
1.60A {Homo sapiens} PDB: 3o5f_A
Length = 144
Score = 81.2 bits (201), Expect = 1e-20
Identities = 37/99 (37%), Positives = 46/99 (46%), Gaps = 20/99 (20%)
Query: 71 EGNTITLEVKG-KATVHLSVK-SNNQQFDSSTQ-GPGFKFRLGKGEVIKGWD-------V 120
GN + G K VH K SN ++FDSS F F LGKG+VIK WD
Sbjct: 44 VGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKK 103
Query: 121 DEED----------GNKGSPPAIPPNSTLVFDVELKNVN 149
E G+ GS P IP N+TL F++EL +
Sbjct: 104 GEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A
3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Length = 128
Score = 78.8 bits (195), Expect = 5e-20
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 18/76 (23%)
Query: 92 NNQQFDSSTQ-GPGFKFRLGKGEVIKGWD-------VDEED----------GNKGSPPAI 133
N ++FDSS F F LGKG+VIK WD E G+ GS P I
Sbjct: 51 NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKI 110
Query: 134 PPNSTLVFDVELKNVN 149
P N+TL F++EL +
Sbjct: 111 PSNATLFFEIELLDFK 126
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase,
polymorphism, rotamase, structural genomics, structural
genomics consortium, SGC; 1.80A {Homo sapiens}
Length = 102
Score = 78.0 bits (193), Expect = 6e-20
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 18/76 (23%)
Query: 92 NNQQFDSSTQ-GPGFKFRLGKGEVIKGWD-------VDEED----------GNKGSPPAI 133
+ +FDSS F F LG G+VIKGWD E+ G +G+PP I
Sbjct: 22 DGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKI 81
Query: 134 PPNSTLVFDVELKNVN 149
P +TLVF+VEL +
Sbjct: 82 PGGATLVFEVELLKIE 97
>2ppn_A FK506-binding protein 1A; high resolution protein structure,
isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB:
1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A*
1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A*
1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Length = 107
Score = 78.0 bits (193), Expect = 7e-20
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 20/98 (20%)
Query: 71 EGNTITLEVKG-KATVHLSVK-SNNQQFDSSTQ-GPGFKFRLGKGEVIKGWD-------V 120
G+ T +G VH + + ++FDSS FKF LGK EVI+GW+ V
Sbjct: 9 PGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSV 68
Query: 121 DEED----------GNKGSPPAIPPNSTLVFDVELKNV 148
+ G G P IPP++TLVFDVEL +
Sbjct: 69 GQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor,
SHH signalling antagonist, structural genomics
consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Length = 118
Score = 76.5 bits (189), Expect = 4e-19
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 21/83 (25%)
Query: 84 TVHLSVK-SNNQQFDSSTQGPGFKFRLGKGEVIKGWD-------VDEED----------G 125
TVHL N + P F LG +VI+ D V E G
Sbjct: 37 TVHLQTSLENGTRVQEE---PELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYG 93
Query: 126 NKGSPPAIPPNSTLVFDVELKNV 148
+G P IPP++ L +V LK
Sbjct: 94 PQGRSPYIPPHAALCLEVTLKTA 116
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura
genomics, seattle structural genomics center for
infectious; NMR {Giardia lamblia}
Length = 130
Score = 76.1 bits (188), Expect = 7e-19
Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 18/75 (24%)
Query: 92 NNQQFDSSTQ-GPGFKFRLGKGEVIKGWD-------VDEED----------GNKGSPPAI 133
+ +QFDSS G F+F LG GEVIKGWD + E+ G +G PP I
Sbjct: 56 DGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYPPVI 115
Query: 134 PPNSTLVFDVELKNV 148
PP +TLVF+VEL V
Sbjct: 116 PPKATLVFEVELLAV 130
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 77.2 bits (190), Expect = 2e-18
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 18/75 (24%)
Query: 92 NNQQFDSSTQ-GPGFKFRLGKGEVIKGWD-------VDEED----------GNKGSPPAI 133
+ Q+FDSS F F LG G VIKGWD V G +G+ I
Sbjct: 135 DGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVI 194
Query: 134 PPNSTLVFDVELKNV 148
PPN+TLVF+VEL +V
Sbjct: 195 PPNATLVFEVELLDV 209
>1r9h_A FKB-6, FK506 binding protein family; structural genomics,
peptidylprolyl isomerase, PSI, protein structure
initiative; 1.80A {Caenorhabditis elegans} SCOP:
d.26.1.1
Length = 135
Score = 75.0 bits (185), Expect = 2e-18
Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 18/76 (23%)
Query: 92 NNQQFDSS-TQGPGFKFRLGKGEVIKGWD-------VDEED----------GNKGSPPAI 133
N +FDSS +G F F LG+G VIKGWD E G+ GSPP I
Sbjct: 46 NGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKI 105
Query: 134 PPNSTLVFDVELKNVN 149
P +TL+F+VEL +
Sbjct: 106 PGGATLIFEVELFEWS 121
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat,
williams-beuren syndrome, structural genomics
consortium, SGC; 2.10A {Homo sapiens}
Length = 134
Score = 73.4 bits (181), Expect = 9e-18
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 20/95 (21%)
Query: 71 EGNTITLEVKGKATVHLS--VKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWD-------V 120
EG + V S ++ ++ FDS+ +LG+ + G +
Sbjct: 35 EGAGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRR 94
Query: 121 DEED----------GNKGSPPAIPPNSTLVFDVEL 145
E G G PP IPPN+T++F++EL
Sbjct: 95 GELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIEL 129
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506
binding protein; 1.85A {Arabidopsis thaliana} SCOP:
d.26.1.1 PDB: 1y0o_A
Length = 129
Score = 72.4 bits (178), Expect = 2e-17
Identities = 29/86 (33%), Positives = 33/86 (38%), Gaps = 29/86 (33%)
Query: 92 NNQQFDSSTQ-GPGFKFRLGKGEVIKGWDV----------------------------DE 122
N + FDSS G FR+G GEVIKGWD D
Sbjct: 43 NGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDR 102
Query: 123 EDGNKGSPPAIPPNSTLVFDVELKNV 148
G KG IPP S L+FD+E
Sbjct: 103 GAGCKGGSCLIPPASVLLFDIEYIGK 128
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics,
structural genomics consortium, SGC, PE prolyl CIS-trans
isomerase; 1.82A {Homo sapiens}
Length = 125
Score = 71.9 bits (177), Expect = 3e-17
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 21/80 (26%)
Query: 90 KSNNQQFDSSTQ---GPGFKFRLGKGEVIKGWD-------VDEED----------GNKGS 129
+ + F S+ + G F LG E +KGWD V E+ G +G
Sbjct: 44 EKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGK 103
Query: 130 PPAIPPNSTLVFDVELKNVN 149
IPP STL+F+++L +
Sbjct: 104 GK-IPPESTLIFNIDLLEIR 122
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel,
central helix, with flexible N-terminal extension,
isomerase; NMR {Homo sapiens}
Length = 157
Score = 71.7 bits (176), Expect = 6e-17
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 22/84 (26%)
Query: 84 TVHLSVK-SNNQQFDSSTQGPGFKFRLGKGEVIKGWD-------VDEED----------G 125
TVHL N + P F LG +VI+ D V E G
Sbjct: 67 TVHLQTSLENGTRVQEE---PELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYG 123
Query: 126 NKGS-PPAIPPNSTLVFDVELKNV 148
+GS P IPP++ L +V LK
Sbjct: 124 PQGSRSPYIPPHAALCLEVTLKTA 147
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 135
Score = 70.8 bits (174), Expect = 8e-17
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 22/85 (25%)
Query: 84 TVHLSVK-SNNQQFDSSTQGPGFKFRLGKGEVIKGWD-------VDEED----------G 125
TVHL N + P F LG +VI+ D V E G
Sbjct: 41 TVHLQTSLENGTRVQEE---PELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYG 97
Query: 126 NKGS-PPAIPPNSTLVFDVELKNVN 149
+GS P IPP++ L +V LK
Sbjct: 98 PQGSRSPYIPPHAALCLEVTLKTAV 122
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET:
SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A
2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Length = 133
Score = 70.3 bits (173), Expect = 1e-16
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 18/75 (24%)
Query: 92 NNQQFDSSTQ-GPGFKFRLGKGEVIKGWD-------VDEED----------GNKGSPPAI 133
+ Q+FDSS F F LG G VIKGWD V G +G+ I
Sbjct: 59 DGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVI 118
Query: 134 PPNSTLVFDVELKNV 148
PPN+TLVF+VEL +V
Sbjct: 119 PPNATLVFEVELLDV 133
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein,
phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP:
d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Length = 280
Score = 72.6 bits (178), Expect = 2e-16
Identities = 36/85 (42%), Positives = 43/85 (50%), Gaps = 19/85 (22%)
Query: 82 KATVHLSVK-SNNQQFDSSTQ-GPGFKFRLGKGEVIKGWD-------VDEED-------- 124
+ VH + + +FDSS F F LGKGEVIK WD V E
Sbjct: 72 RVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEY 131
Query: 125 --GNKGSPPAIPPNSTLVFDVELKN 147
G+ GSPP IPPN+TLVF+VEL
Sbjct: 132 AYGSAGSPPKIPPNATLVFEVELFE 156
Score = 60.3 bits (146), Expect = 8e-12
Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 25/131 (19%)
Query: 39 SSLVLNVDGTETILCNLGKPNYLQERLDLNFIEGNTITLEVKGKATVHLSVKSNNQQFDS 98
++LV V+ E +L + + V L ++ FD
Sbjct: 146 ATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQ 205
Query: 99 STQGPGFKFRLGKGEVIK---GWD-------VDEED----------GNKGSPP-AIPPNS 137
+F +G+GE + G + E G+ G IPPN+
Sbjct: 206 R----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNA 261
Query: 138 TLVFDVELKNV 148
L +++ LK+
Sbjct: 262 ELKYELHLKSF 272
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus,
phosphoprotein, R isomerase-inhibitor complex; HET: RAP;
1.95A {Mus musculus} PDB: 1pbk_A*
Length = 119
Score = 69.2 bits (170), Expect = 2e-16
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 28/107 (26%)
Query: 71 EGNTITLEVKG-KATVHLSVK-SNNQQFDSSTQGPG--------FKFRLGKGEVIKGWD- 119
+G+ KG + + FD++ Q F++G G+VI+GWD
Sbjct: 13 KGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDE 72
Query: 120 ------VDEED----------GNKGSP-PAIPPNSTLVFDVELKNVN 149
E+ G KG P IPPN+ L+F+VEL +++
Sbjct: 73 ALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDID 119
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain
five-stranded anti-parallel beta-sheet alpha-helix
crossing THis sheet; 2.08A {Triticum aestivum} PDB:
3jym_A
Length = 356
Score = 71.0 bits (174), Expect = 2e-15
Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 19/83 (22%)
Query: 82 KATVHLSVK-SNNQQFDSS-TQGPGFKFRLGKGEVIKGWD-------VDEED-------- 124
+ VH + + ++FDSS + FKF+LG+G+VIKGWD E
Sbjct: 32 EVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPPEL 91
Query: 125 --GNKGSPPAIPPNSTLVFDVEL 145
G GSPP IP N+TL FDVEL
Sbjct: 92 AYGESGSPPTIPANATLQFDVEL 114
Score = 59.1 bits (143), Expect = 3e-11
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 22/89 (24%)
Query: 82 KATVHLSVK-SNNQQF-DSSTQ-GPGFKFRLGKGEVIKGWD-------VDEE-------- 123
TV ++ K + F F+F+ + VI+G D E
Sbjct: 265 VVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPE 324
Query: 124 ----DGNKGSPPAIPPNSTLVFDVELKNV 148
+PPNST++++VEL +
Sbjct: 325 YAYGSTESKQDAIVPPNSTVIYEVELVSF 353
Score = 58.7 bits (142), Expect = 4e-11
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 26/89 (29%)
Query: 84 TVHLSVK-SNNQQFDSSTQGPGFKFRLGKGEVIKGWD-------VDEED----------G 125
V + + S G +F + G + E+ G
Sbjct: 150 FVKYEARLEDGTVVSKSE---GVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFG 206
Query: 126 NKGSPP-----AIPPNSTLVFDVELKNVN 149
G P A+PPN++LV D+EL +
Sbjct: 207 EMGRPAAGEGGAVPPNASLVIDLELVSWK 235
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A
{Arabidopsis thaliana}
Length = 180
Score = 62.6 bits (152), Expect = 3e-13
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 21/77 (27%)
Query: 94 QQFDSSTQ-GPGFKFRLGK-GEVIKGWD-------VDEE------------DGNKGSPPA 132
+F+ + + LGK + + G E S P
Sbjct: 83 HKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPN 142
Query: 133 IPPNSTLVFDVELKNVN 149
+PP + L+++VE+ +
Sbjct: 143 VPPMADLLYEVEVIGFD 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 62.4 bits (151), Expect = 2e-12
Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 19/85 (22%)
Query: 84 TVHLSVK-SNNQQFDSS-TQGPGFKFRLGKGEVIKGWD-------VDEED---------- 124
VH K SN ++FDSS + F F LGKG+VIK WD E
Sbjct: 54 YVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAY 113
Query: 125 GNKGSPPAIPPNSTLVFDVELKNVN 149
G+ GS P IP N+TL F++EL +
Sbjct: 114 GSAGSLPKIPSNATLFFEIELLDFK 138
Score = 47.4 bits (112), Expect = 3e-07
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 25/89 (28%)
Query: 82 KATVHLSVKSNNQQFDSSTQGPGFKFRLGKGE---VIKGWD-------VDEED------- 124
+HL + + FD F +G+GE + G D +E+
Sbjct: 167 TVEIHLEGRCGGRMFDCR----DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPR 222
Query: 125 ---GNKGSPPA-IPPNSTLVFDVELKNVN 149
G G P I PN+ L+++V LK+
Sbjct: 223 YGFGEAGKPKFGIEPNAELIYEVTLKSFE 251
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 56.3 bits (136), Expect = 1e-10
Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 34/99 (34%)
Query: 71 EGNTITLEVKGKATVHLSVKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVDEED------ 124
+ + G+ + + FD S FRL VI GW
Sbjct: 134 ANGRVEVRYVGRLP-------DGKIFDQS--TQPQWFRLDS--VISGWT---SALQNMPT 179
Query: 125 --------------GNKGSPPAIPPNSTLVFDVELKNVN 149
G +G+ I P + LVF++EL V+
Sbjct: 180 GAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIAVS 218
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase,
isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Length = 167
Score = 55.5 bits (134), Expect = 1e-10
Identities = 26/75 (34%), Positives = 29/75 (38%), Gaps = 26/75 (34%)
Query: 96 FDSS-TQGPGFKFRLGKGEVIKGWDVDEED--------------------GNKGSPPAIP 134
FDSS +G FR EVIKGW E G G IP
Sbjct: 73 FDSSRERGKPTTFRPN--EVIKGWT---EALQLMREGDRWRLFIPYDLAYGVTGGGGMIP 127
Query: 135 PNSTLVFDVELKNVN 149
P S L FDVEL ++
Sbjct: 128 PYSPLEFDVELISIK 142
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain,
long alpha helix, dimerisation VIA helical INTE
isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1
PDB: 2uz5_A 2vcd_A*
Length = 213
Score = 53.5 bits (129), Expect = 1e-09
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 33/100 (33%)
Query: 71 EGNTITLEVKGKATVHLSVKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVDEED----- 124
+ +T+T+E G+ + FDS+ + G F++ +VI GW E
Sbjct: 123 KSDTVTVEYTGRLI-------DGTVFDSTEKTGKPATFQVS--QVIPGWT---EALQLMP 170
Query: 125 ---------------GNKGSPPAIPPNSTLVFDVELKNVN 149
G + I PN TL+F + L +V
Sbjct: 171 AGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVK 210
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone,
peptidyl-prolyl isomerase, heat shock protein, FK
family; HET: MSE; 1.97A {Escherichia coli} SCOP:
d.26.1.1 PDB: 1q6i_A* 1q6u_A
Length = 224
Score = 49.0 bits (117), Expect = 5e-08
Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 34/99 (34%)
Query: 71 EGNTITLEVKGKATVHLSVKSNNQQFDSSTQ-GPGFKFRLGKGEVIKGWDVDEED----- 124
+ +T+ + KG + ++FD+S G FRL VI GW E
Sbjct: 138 DSDTVVVNYKGTLI-------DGKEFDNSYTRGEPLSFRLD--GVIPGWT---EGLKNIK 185
Query: 125 ---------------GNKGSPPAIPPNSTLVFDVELKNV 148
G G P IPPNSTLVFDVEL +V
Sbjct: 186 KGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLDV 223
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 42.6 bits (100), Expect = 1e-05
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 25/89 (28%)
Query: 82 KATVHLSVKSNNQQFDSSTQGPGFKFRLGKGE---VIKGWD-------VDEED------- 124
V L ++ FD +F +G+GE + G + E
Sbjct: 46 IVEVALEGYYKDKLFDQR----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPS 101
Query: 125 ---GNKGSPPA-IPPNSTLVFDVELKNVN 149
G+ G IPPN+ L +++ LK+
Sbjct: 102 YAFGSVGKEKFQIPPNAELKYELHLKSFE 130
>1nlq_A Nucleoplasmin-like protein; DNLP, chaperone, histone binding, X-RAY
crystallography, ligand binding; 1.50A {Drosophila
melanogaster} SCOP: b.121.3.1
Length = 108
Score = 37.6 bits (87), Expect = 2e-04
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 10/97 (10%)
Query: 1 MFWGFVLEPKKRYNT-------TVTKPFHISMAALDPKSITDNEVSSLVLNVDGTET--I 51
F+G L + T + I L ++ +NE + + +N
Sbjct: 5 SFYGVTLTAESDSVTWDVDEDYARGQKLVIKQILLGAEA-KENEFNVVEVNTPKDSVQIP 63
Query: 52 LCNLGKPNYLQERLDLNFIEGNTITLEVKGKATVHLS 88
+ L D+ F E +KG V++
Sbjct: 64 IAVLKAGETRAVNPDVEFYESKVTFKLIKGSGPVYIH 100
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 38.5 bits (89), Expect = 4e-04
Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 23/89 (25%)
Query: 82 KATVHLSVK--SNNQQFDSS-TQGPGFKFRLGK-GEVIKGWD-------VDEED------ 124
+H ++ +F+ + + + LGK + + G E
Sbjct: 69 TCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGW 128
Query: 125 ----GNKGSPP--AIPPNSTLVFDVELKN 147
G +G+ +PP + L+++VE+
Sbjct: 129 ELAYGKEGNFSFPNVPPMADLLYEVEVIG 157
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.007
Identities = 32/141 (22%), Positives = 45/141 (31%), Gaps = 49/141 (34%)
Query: 17 VTKPFHIS--MAALDPKSITD---NEV----SSLVLNV----DGTETILCNLGKPNYLQE 63
V PFH S + D N V + + V DG++ L L + E
Sbjct: 423 VASPFH-SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD--LRVLSGS--ISE 477
Query: 64 RL-DLNFIEGNTI--TLEVKGKATVHLSVKSNNQQFDSSTQGPGFKFRL---------GK 111
R+ D + + KAT H+ F GPG L G
Sbjct: 478 RIVDCIIRL--PVKWETTTQFKAT-HILD------F-----GPGGASGLGVLTHRNKDGT 523
Query: 112 G-EVIKGWDVD----EEDGNK 127
G VI +D ++ G K
Sbjct: 524 GVRVIVAGTLDINPDDDYGFK 544
Score = 30.0 bits (67), Expect = 0.30
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 32/93 (34%)
Query: 24 SMAALDPKSITDNEVSSLVLNVDGTETILCNLGKP--------NY----LQ-------ER 64
M A++P + + + + + ++ +GK NY Q
Sbjct: 1808 GMIAINPGRV------AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA 1861
Query: 65 LD-----LNFIEGNTITLEVKGKATVHL-SVKS 91
LD LNFI+ I + ++ + ++ L V+
Sbjct: 1862 LDTVTNVLNFIKLQKIDI-IELQKSLSLEEVEG 1893
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.24
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 13/69 (18%)
Query: 20 PFHISM-AAL--DPKSITDNEVSSLVLNVDGTETI----LCNLGKPNYLQERL-DLN-FI 70
P +S+ A D + DN +N D TI L L +P ++ L+ F
Sbjct: 327 PRRLSIIAESIRDGLATWDN---WKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFP 382
Query: 71 EGNTITLEV 79
I +
Sbjct: 383 PSAHIPTIL 391
>2qzt_A Sterol carrier protein 2-like 2; mosquito, fatty acid, palmitic
acid, cholesterol, lipid transport; HET: PLM; 1.70A
{Aedes aegypti} PDB: 3bdq_A*
Length = 111
Score = 28.7 bits (64), Expect = 0.38
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 105 FKFRLGKGEVIKGWDVDEEDGNKGSPPAIPPNSTLVFDVE 144
F+ + ++ W VD + P+ T+ +E
Sbjct: 35 FQLNIKTASGVEQWIVDLKQLKVDQGVFASPDVTVTVGLE 74
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein,
cobalt, copper, cytoplasm, metal- binding, nickel,
rotamase, zinc; NMR {Escherichia coli}
Length = 196
Score = 27.3 bits (61), Expect = 1.8
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 84 TVHLSVK-SNNQQFDSSTQGPGFKFRLGKGEVIKG 117
++ V+ + D S + G G +I G
Sbjct: 10 SLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISG 44
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone,
rotamase; NMR {Escherichia coli}
Length = 171
Score = 26.9 bits (60), Expect = 2.5
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 84 TVHLSVK-SNNQQFDSSTQGPGFKFRLGKGEVIKG 117
++ V+ + D S + G G +I G
Sbjct: 10 SLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISG 44
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two
domain P rotamase; 2.41A {Thermus thermophilus} PDB:
3cgn_A 3luo_A*
Length = 158
Score = 26.5 bits (59), Expect = 2.5
Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 84 TVHLSVKSNNQQFDSSTQGPGFKFRLGKGEVIKG 117
T+ +++ + D + G +I G
Sbjct: 10 TIRYTLQVEGEVLDQG---E-LSYLHGHRNLIPG 39
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 27.0 bits (59), Expect = 2.7
Identities = 6/58 (10%), Positives = 17/58 (29%)
Query: 44 NVDGTETILCNLGKPNYLQERLDLNFIEGNTITLEVKGKATVHLSVKSNNQQFDSSTQ 101
+L P ++ L T+ + +G+ + +N + +
Sbjct: 18 RAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLDWLWPNNQSGSEQRVE 75
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_9
Length = 189
Score = 26.6 bits (58), Expect = 3.1
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 72 GNTITLEVKGKATVHLSVKS 91
G T ++ +V L +KS
Sbjct: 10 GETKIYTLEQGTSV-LDLKS 28
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.4 bits (58), Expect = 5.0
Identities = 9/77 (11%), Positives = 19/77 (24%), Gaps = 19/77 (24%)
Query: 60 YLQERLDLNFIEG--------------NTITLEVKGKATVHLSVKSNNQQFDSSTQGPGF 105
++E DL E E+ + + + F
Sbjct: 927 IVEE--DLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALR--F 982
Query: 106 KFRLGKGEVIKGWDVDE 122
+ G++ GW+
Sbjct: 983 DRLVA-GQIPTGWNAKT 998
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_A 1hr8_A* 1hr9_A*
Length = 475
Score = 25.7 bits (57), Expect = 6.6
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 24 SMAALDPKSITDNEV--------SSLVLNVDGTETILCNLGK 57
+ A +T++EV SSL++N++ L ++G+
Sbjct: 340 NTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGR 381
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein,
rotamase; NMR {Helicobacter pylori}
Length = 151
Score = 25.3 bits (56), Expect = 7.1
Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 84 TVH--LSVKSNNQQFDSSTQGPGFKFRLGKGEVIKG 117
+ + + ++ DS+ +F +G ++I G
Sbjct: 14 LIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAG 49
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 7.2
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 128 GSPPAIPPNSTL 139
S PA+ +T+
Sbjct: 35 DSAPALAIKATM 46
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; NMR {Homo sapiens}
Length = 93
Score = 24.7 bits (54), Expect = 7.9
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 72 GNTITLEVKGKATVHLSVKS 91
T EV G+ TV +K+
Sbjct: 27 QELHTFEVTGQETV-AQIKA 45
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_B 1hr8_B* 1hr9_B*
Length = 443
Score = 25.6 bits (57), Expect = 8.3
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 25 MAALDPKSITDNEV--------SSLVLNVDGTETILCNLGK 57
+ I+D EV ++L+L++DG+ I+ ++G+
Sbjct: 341 WKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGR 381
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.134 0.394
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,208,602
Number of extensions: 117347
Number of successful extensions: 288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 54
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.2 bits)