RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4027
(149 letters)
>d1nlqa_ b.121.3.1 (A:) Chromatin decondensation protein 1 (Crp1,
Nlp) {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 105
Score = 56.5 bits (136), Expect = 5e-12
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 8/95 (8%)
Query: 2 FWGFVLEPKKRYNT-------TVTKPFHISMAALDPK-SITDNEVSSLVLNVDGTETILC 53
F+G L + T + I L + + V + D + +
Sbjct: 4 FYGVTLTAESDSVTWDVDEDYARGQKLVIKQILLGAEAKENEFNVVEVNTPKDSVQIPIA 63
Query: 54 NLGKPNYLQERLDLNFIEGNTITLEVKGKATVHLS 88
L D+ F E +KG V++
Sbjct: 64 VLKAGETRAVNPDVEFYESKVTFKLIKGSGPVYIH 98
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 113
Score = 45.1 bits (106), Expect = 1e-07
Identities = 18/25 (72%), Positives = 19/25 (76%)
Query: 125 GNKGSPPAIPPNSTLVFDVELKNVN 149
G +G P IPPNSTLVFDVEL VN
Sbjct: 89 GPRGFPGLIPPNSTLVFDVELLKVN 113
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 111
Score = 44.8 bits (105), Expect = 2e-07
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 23/95 (24%)
Query: 71 EGNTITLEVKGKATVHLSVKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVDEED------ 124
G+ + + GK + + + S + F F +GKG+VIK WD+
Sbjct: 22 IGDRVYVHYNGK------LANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEI 75
Query: 125 -----------GNKGSPPAIPPNSTLVFDVELKNV 148
G GS P IP N+TL F+VEL +
Sbjct: 76 CHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF 110
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
(MIP) {Legionella pneumophila [TaxId: 446]}
Length = 204
Score = 46.0 bits (108), Expect = 2e-07
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 17/84 (20%)
Query: 82 KATVHLSVKSNNQQFDSSTQGPGFKFRLGKGEVIKGWD-------VDEED---------- 124
TV + + + ST+ G +VI GW
Sbjct: 118 TVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAY 177
Query: 125 GNKGSPPAIPPNSTLVFDVELKNV 148
G + I PN TL+F + L +V
Sbjct: 178 GPRSVGGPIGPNETLIFKIHLISV 201
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 115
Score = 43.1 bits (101), Expect = 9e-07
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 19/85 (22%)
Query: 82 KATVHLSVKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDV-----------------DEED 124
+ +HL + + FD ++ G D
Sbjct: 29 RVQIHLEGRCGGRVFDCRDV-AFTVGEGEDHDIPIGIDKALEKMQREEQCILHLGPRYGF 87
Query: 125 GNKGSPPA-IPPNSTLVFDVELKNV 148
G G P I PN+ L+++V LK+
Sbjct: 88 GEAGKPKFGIEPNAELIYEVTLKSF 112
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
(MIP) {Trypanosoma cruzi [TaxId: 5693]}
Length = 160
Score = 43.7 bits (102), Expect = 1e-06
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 125 GNKGSPPAIPPNSTLVFDVELKNVN 149
G G IPP S L FDVEL ++
Sbjct: 115 GVTGGGGMIPPYSPLEFDVELISIK 139
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 118
Score = 42.0 bits (98), Expect = 2e-06
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 125 GNKGSPPAIPPNSTLVFDVELKNVN 149
G+ GSPP IP +TL+F+VEL +
Sbjct: 93 GDAGSPPKIPGGATLIFEVELFEWS 117
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an
immunophilin {Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 41.7 bits (97), Expect = 2e-06
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 125 GNKGSPPAIPPNSTLVFDVELKNV 148
G G P IPP++TLVFDVEL +
Sbjct: 83 GATGHPGIIPPHATLVFDVELLKL 106
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA
{Escherichia coli [TaxId: 562]}
Length = 210
Score = 42.9 bits (100), Expect = 3e-06
Identities = 24/98 (24%), Positives = 33/98 (33%), Gaps = 18/98 (18%)
Query: 68 NFIEGNTITLEVKGKATVHLSVKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVDEED--- 124
G + V+ + + ++ G VI GW ++
Sbjct: 113 VVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKK 172
Query: 125 --------------GNKGSPPAIPPNSTLVFDVELKNV 148
G G P IPPNSTLVFDVEL +V
Sbjct: 173 GGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLDV 209
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 41.6 bits (97), Expect = 3e-06
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 125 GNKGSPPAIPPNSTLVFDVELKNV 148
G+ GSPP IPPN+TLVF+VEL
Sbjct: 94 GSAGSPPKIPPNATLVFEVELFEF 117
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 125
Score = 41.0 bits (95), Expect = 6e-06
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 125 GNKGSPPAIPPNSTLVFDVEL 145
G KG IPP S L+FD+E
Sbjct: 101 GCKGGSCLIPPASVLLFDIEY 121
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 39.0 bits (90), Expect = 3e-05
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 125 GNKGSPPA-IPPNSTLVFDVELKNVN 149
G KG P A IPPN+ L F+VEL +++
Sbjct: 91 GKKGQPDAKIPPNAKLTFEVELVDID 116
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 38.2 bits (88), Expect = 6e-05
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 121 DEEDGNKGSPPA-IPPNSTLVFDVELKNV 148
G+ G IPPN+ L +++ LK+
Sbjct: 84 SYAFGSVGKEKFQIPPNAELKYELHLKSF 112
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma
genitalium [TaxId: 2097]}
Length = 85
Score = 36.1 bits (83), Expect = 2e-04
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 13/79 (16%)
Query: 82 KATVHLSVKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVDEEDGNKGS------------ 129
A + + +N++ S ++ +G IKG++
Sbjct: 7 IAIIDFTGIVDNKKLAS-ASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDY 65
Query: 130 PPAIPPNSTLVFDVELKNV 148
+ + F+V LK +
Sbjct: 66 HVKELQSKPVTFEVVLKAI 84
>d1ilr1_ b.42.1.2 (1:) Interleukin-1 receptor antagonist protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 27.4 bits (61), Expect = 0.51
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 13/89 (14%)
Query: 32 SITDNEVSSLVLNVDGTETILCNLGKPNYLQERLDLNFIEGNTITLEVKG---------- 81
I D + L + G L+E++D+ IE + + L + G
Sbjct: 7 RIWDVNQKTFYL-RNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSCVKS 65
Query: 82 --KATVHLSVKSNNQQFDSSTQGPGFKFR 108
+ + L + ++ Q F F
Sbjct: 66 GDETRLQLEAVNITDLSENRKQDKRFAFI 94
>d1m1ha1 b.114.1.1 (A:51-131) N-utilization substance G protein
NusG, insert domain {Aquifex aeolicus [TaxId: 63363]}
Length = 81
Score = 25.0 bits (54), Expect = 1.9
Identities = 14/60 (23%), Positives = 24/60 (40%)
Query: 75 ITLEVKGKATVHLSVKSNNQQFDSSTQGPGFKFRLGKGEVIKGWDVDEEDGNKGSPPAIP 134
+ + +GK LS+K N + + FR+ GEV V+ + P + P
Sbjct: 4 VVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVKVVESVEGDTCVNAPPISKP 63
>d1jv2a2 b.1.15.1 (A:599-737) Thigh, calf-1 and calf-2 domains of
integrin alpha {Human (Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 25.6 bits (56), Expect = 2.1
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 2/89 (2%)
Query: 13 YNT--TVTKPFHISMAALDPKSITDNEVSSLVLNVDGTETILCNLGKPNYLQERLDLNFI 70
Y V+ P + + +S + T ++C+LG P +L
Sbjct: 41 YEAELIVSIPLQADFIGVVRNNEALARLSCAFKTENQTRQVVCDLGNPMKAGTQLLAGLR 100
Query: 71 EGNTITLEVKGKATVHLSVKSNNQQFDSS 99
E+ L ++S+N S
Sbjct: 101 FSVHQQSEMDTSVKFDLQIQSSNLFDKVS 129
>d1ywya1 b.55.2.1 (A:23-96) Hypothetical protein PA2021
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 74
Score = 24.5 bits (53), Expect = 2.4
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 7 LEPKKRYNTTVTKPFHISMAALDPKSITDNEVSSLVLNVDGT 48
++ ++ + + + TD E VL +DG
Sbjct: 5 IDSEQGVCSVEIEGSRHRAPVDSLRIGTDAEARLSVLYIDGK 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.134 0.394
Gapped
Lambda K H
0.267 0.0488 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 542,415
Number of extensions: 22060
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 21
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.2 bits)