BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy403
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/168 (47%), Positives = 104/168 (61%), Gaps = 35/168 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
MD AFQY++DN G+D+E SYPYEA +++C
Sbjct: 162 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 190
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y S A D G+VDIP+ E L AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 191 KYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 249
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S +DH VLVVGYG T+ +GN YWLVKNSW WG GY+KMA++R
Sbjct: 250 SEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDR 297
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 153 bits (387), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
MD AFQY++DN G+D+E SYPYEA +++C
Sbjct: 108 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 136
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y S A D G+VDIP+ E L AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 137 KYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 195
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S +DH VLVVGYG T+ + N YWLVKNSW WG GY+KMA++R
Sbjct: 196 SEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 243
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 153 bits (387), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
MD AFQY++DN G+D+E SYPYEA +++C
Sbjct: 166 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 194
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y S A D G+VDIP+ E L AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 195 KYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 253
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S +DH VLVVGYG T+ + N YWLVKNSW WG GY+KMA++R
Sbjct: 254 SEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 301
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
MD AFQY++DN G+D+E SYPYEA +++C
Sbjct: 71 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 99
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y S A D G+VDIP+ E L AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 100 KYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 158
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S +DH VLVVGYG T+ + N YWLVKNSW WG GY+KMA++R
Sbjct: 159 SEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 206
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
MD AFQY++DN G+D+E SYPYEA +++C
Sbjct: 70 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 98
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y S A D G+VDIP+ E L AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 99 KYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 157
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S +DH VLVVGYG T+ + N YWLVKNSW WG GY+KMA++R
Sbjct: 158 SEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 205
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
MD AFQY++DN G+D+E SYPYEA +++C
Sbjct: 70 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 98
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y S A D G+VDIP+ E L AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 99 KYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 157
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S +DH VLVVGYG T+ + N YWLVKNSW WG GY+KMA++R
Sbjct: 158 SEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 205
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 153 bits (386), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
MD AFQY++DN G+D+E SYPYEA +++C
Sbjct: 70 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 98
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y S A D G+VDIP+ E L AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 99 KYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 157
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S +DH VLVVGYG T+ + N YWLVKNSW WG GY+KMA++R
Sbjct: 158 SEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 205
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 153 bits (386), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
MD AFQY++DN G+D+E SYPYEA +++C
Sbjct: 71 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 99
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y S A D G+VDIP+ E L AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 100 KYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 158
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S +DH VLVVGYG T+ + N YWLVKNSW WG GY+KMA++R
Sbjct: 159 SEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 206
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 153 bits (386), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
MD AFQY++DN G+D+E SYPYEA +++C
Sbjct: 70 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 98
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y S A D G+VDIP+ E L AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 99 KYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 157
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S +DH VLVVGYG T+ + N YWLVKNSW WG GY+KMA++R
Sbjct: 158 SEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 205
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
MD AFQY++DN G+D+E SYPYEA +++C
Sbjct: 70 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 98
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y S A D G+VDIP+ E L AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 99 KYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 157
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S +DH VLVVGYG T+ + N YWLVKNSW WG GY+KMA++R
Sbjct: 158 SEDMDHGVLVVGYGFESTESDDNKYWLVKNSWGEEWGMGGYVKMAKDR 205
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 97/165 (58%), Gaps = 32/165 (19%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQY++ N GID+E +YPY +++C
Sbjct: 70 MTNAFQYVQKNRGIDSEDAYPYVGQ-------------------------------EESC 98
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
Y A RGY +IPEG+E LK AVA +GPVS+AIDAS SFQFYS+GVYY+ CN
Sbjct: 99 MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCN 158
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S L+HAVL VGYG + GN +W++KNSW WG++GYI MARN+
Sbjct: 159 SDNLNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKGYILMARNK 202
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 97/165 (58%), Gaps = 32/165 (19%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQY++ N GID+E +YPY +++C
Sbjct: 66 MTNAFQYVQKNRGIDSEDAYPYVGQ-------------------------------EESC 94
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
Y A RGY +IPEG+E LK AVA +GPVS+AIDAS SFQFYS+GVYY+ CN
Sbjct: 95 MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCN 154
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S L+HAVL VGYG + GN +W++KNSW WG++GYI MARN+
Sbjct: 155 SDNLNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKGYILMARNK 198
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 96/165 (58%), Gaps = 32/165 (19%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQY++ N GID+E +YPY +++C
Sbjct: 68 MTNAFQYVQKNRGIDSEDAYPYVGQ-------------------------------EESC 96
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
Y A RGY +IPEG+E LK AVA +GPVS+AIDAS SFQFYS+GVYY+ CN
Sbjct: 97 MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCN 156
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S L+HAVL VGYG + GN +W++KNSW WG GYIKMARN+
Sbjct: 157 SDNLNHAVLAVGYG-ESKGNKHWIIKNSWGENWGMGGYIKMARNK 200
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 97/165 (58%), Gaps = 32/165 (19%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQY++ N GID+E +YPY +++C
Sbjct: 68 MTNAFQYVQKNRGIDSEDAYPYVGQ-------------------------------EESC 96
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
Y A RGY +IPEG+E LK AVA +GPVS+AIDAS SFQFYS+GVYY+ CN
Sbjct: 97 MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCN 156
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S L+HAVL VGYG + GN +W++KNSW WG++GYI MARN+
Sbjct: 157 SDNLNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKGYILMARNK 200
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 97/165 (58%), Gaps = 32/165 (19%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQY++ N GID+E +YPY +++C
Sbjct: 67 MTNAFQYVQKNRGIDSEDAYPYVGQ-------------------------------EESC 95
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
Y A RGY +IPEG+E LK AVA +GPVS+AIDAS SFQFYS+GVYY+ CN
Sbjct: 96 MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCN 155
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S L+HAVL VGYG + GN +W++KNSW WG++GYI MARN+
Sbjct: 156 SDNLNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKGYILMARNK 199
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 97/165 (58%), Gaps = 32/165 (19%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQY++ N GID+E +YPY +++C
Sbjct: 167 MTNAFQYVQKNRGIDSEDAYPY-------------------------------VGQEESC 195
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
Y A RGY +IPEG+E LK AVA +GPVS+AIDAS SFQFYS+GVYY+ CN
Sbjct: 196 MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCN 255
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S L+HAVL VGYG + GN +W++KNSW WG++GYI MARN+
Sbjct: 256 SDNLNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKGYILMARNK 299
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 147 bits (372), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 98/165 (59%), Gaps = 32/165 (19%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQY++ N GID+E +YPY D++C
Sbjct: 68 MTNAFQYVQRNRGIDSEDAYPYVGQ-------------------------------DESC 96
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
Y A RGY +IPEG+E LK AVA +GPVS+AIDAS SFQFYS+GVYY+ C+
Sbjct: 97 MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCS 156
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S L+HAVL VGYG + GN +W++KNSW +WG++GYI MARN+
Sbjct: 157 SDNLNHAVLAVGYGI-QKGNKHWIIKNSWGESWGNKGYILMARNK 200
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 146 bits (369), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 96/165 (58%), Gaps = 32/165 (19%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQY++ N GID+E +YPY D++C
Sbjct: 68 MTNAFQYVQRNRGIDSEDAYPYVGQ-------------------------------DESC 96
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
Y A RGY +IPEG+E LK AVA +GPVS+AIDAS SFQFYS GVYY+ C+
Sbjct: 97 MYNPTGKAAKCRGYREIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCS 156
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S L+HAVL VGYG + GN +W++KNSW +WG+ GYI MARN+
Sbjct: 157 SDALNHAVLAVGYGI-QAGNKHWIIKNSWGESWGNAGYILMARNK 200
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 98/168 (58%), Gaps = 34/168 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M +AFQY+K+N G+D+E SYPY A+ D+ C
Sbjct: 70 MARAFQYVKENGGLDSEESYPYVAV-------------------------------DEIC 98
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y+ S A D G+ + G E L AVAT+GP+S+A+DA H SFQFY G+Y+EP+C+
Sbjct: 99 KYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCS 158
Query: 121 STQLDHAVLVVGYGTDENGND---YWLVKNSWNTTWGDEGYIKMARNR 165
S LDH VLVVGYG + +D YWLVKNSW WG GY+K+A+++
Sbjct: 159 SKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDK 206
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 98/168 (58%), Gaps = 34/168 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M +AFQY+K+N G+D+E SYPY A+ D+ C
Sbjct: 70 MARAFQYVKENGGLDSEESYPYVAV-------------------------------DEIC 98
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y+ S A D G+ + G E L AVAT+GP+S+A+DA H SFQFY G+Y+EP+C+
Sbjct: 99 KYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCS 158
Query: 121 STQLDHAVLVVGYGTDENGND---YWLVKNSWNTTWGDEGYIKMARNR 165
S LDH VLVVGYG + +D YWLVKNSW WG GY+K+A+++
Sbjct: 159 SKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDK 206
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 140 bits (354), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 100/165 (60%), Gaps = 32/165 (19%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
MD AFQY++DN G+D+E SYPYEA +++C
Sbjct: 70 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 98
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y S A D G+VDIP+ E L AVAT+GP+S+AIDA H+SF FY EG+Y+ +C+
Sbjct: 99 KYNPKYSVANDVGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCS 157
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
S+ L+HA+LVVGYG N YWLVKNSW WG GY+KMA++R
Sbjct: 158 SSSLNHAMLVVGYGFISNNQKYWLVKNSWGEEWGMGGYVKMAKDR 202
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 94/165 (56%), Gaps = 33/165 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQYI DN GID+++SYPY+AM D C
Sbjct: 71 MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 99
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y A A R Y ++P G E LK AVA GPVS+ +DA H SF Y GVYYEP C
Sbjct: 100 QYDSAYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 158
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
+ ++H VLVVGYG D NG +YWLVKNSW +G++GYI+MARN+
Sbjct: 159 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEKGYIRMARNK 202
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 137 bits (345), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 93/165 (56%), Gaps = 33/165 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQYI DN GID+++SYPY+AM D C
Sbjct: 71 MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 99
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y A R Y ++P G E LK AVA GPVS+ +DA H SF Y GVYYEP C
Sbjct: 100 QYDSKYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 158
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
+ ++H VLVVGYG D NG +YWLVKNSW +G++GYI+MARN+
Sbjct: 159 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEKGYIRMARNK 202
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQYI DN GID+++SYPY+AM D C
Sbjct: 72 MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 100
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y A Y ++P G E LK AVA GPVS+ +DA H SF Y GVYYEP C
Sbjct: 101 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 159
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
+ ++H VLVVGYG D NG +YWLVKNSW +G+EGYI+MARN+
Sbjct: 160 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 203
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQYI DN GID+++SYPY+AM D C
Sbjct: 169 MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 197
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y A Y ++P G E LK AVA GPVS+ +DA H SF Y GVYYEP C
Sbjct: 198 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 256
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
+ ++H VLVVGYG D NG +YWLVKNSW +G+EGYI+MARN+
Sbjct: 257 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 300
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQYI DN GID+++SYPY+AM D C
Sbjct: 73 MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 101
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y A Y ++P G E LK AVA GPVS+ +DA H SF Y GVYYEP C
Sbjct: 102 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 160
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
+ ++H VLVVGYG D NG +YWLVKNSW +G+EGYI+MARN+
Sbjct: 161 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 204
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQYI DN GID+++SYPY+AM D C
Sbjct: 71 MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 99
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y A Y ++P G E LK AVA GPVS+ +DA H SF Y GVYYEP C
Sbjct: 100 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 158
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
+ ++H VLVVGYG D NG +YWLVKNSW +G+EGYI+MARN+
Sbjct: 159 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQYI DN GID+++SYPY+AM D C
Sbjct: 74 MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 102
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y A Y ++P G E LK AVA GPVS+ +DA H SF Y GVYYEP C
Sbjct: 103 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 161
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
+ ++H VLVVGYG D NG +YWLVKNSW +G+EGYI+MARN+
Sbjct: 162 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 205
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQYI DN GID+++SYPY+AM D C
Sbjct: 72 MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 100
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y A Y ++P G E LK AVA GPVS+ +DA H SF Y GVYYEP C
Sbjct: 101 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 159
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
+ ++H VLVVGYG D NG +YWLVKNSW +G+EGYI+MARN+
Sbjct: 160 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 203
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQYI DN GID+++SYPY+AM D C
Sbjct: 71 MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 99
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y A Y ++P G E LK AVA GPVS+ +DA H SF Y GVYYEP C
Sbjct: 100 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 158
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
+ ++H VLVVGYG D NG +YWLVKNSW +G+EGYI+MARN+
Sbjct: 159 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQYI DN GID+++SYPY+AM D C
Sbjct: 71 MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 99
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y A Y ++P G E LK AVA GPVS+ +DA H SF Y GVYYEP C
Sbjct: 100 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 158
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
+ ++H VLVVGYG D NG +YWLVKNSW +G+EGYI+MARN+
Sbjct: 159 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQYI DN GID+++SYPY+AM D C
Sbjct: 71 MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 99
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y A Y ++P G E LK AVA GPVS+ +DA H SF Y GVYYEP C
Sbjct: 100 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 158
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
+ ++H VLVVGYG D NG +YWLVKNSW +G+EGYI+MARN+
Sbjct: 159 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQYI DN GID+++SYPY+AM D C
Sbjct: 72 MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 100
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y A Y ++P G E LK AVA GPVS+ +DA H SF Y GVYYEP C
Sbjct: 101 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 159
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
+ ++H VLVVGYG D NG +YWLVKNSW +G+EGYI+MARN+
Sbjct: 160 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 203
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M AFQYI DN GID+++SYPY+AM D C
Sbjct: 71 MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DLKC 99
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y A Y ++P G E LK AVA GPVS+ +DA H SF Y GVYYEP C
Sbjct: 100 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 158
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
+ ++H VLVVGYG D NG +YWLVKNSW +G+EGYI+MARN+
Sbjct: 159 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 92/164 (56%), Gaps = 34/164 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
MD AF YI D +GI +ES+YPYEA D C
Sbjct: 184 MDSAFSYIHD-YGIMSESAYPYEAQ-------------------------------GDYC 211
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
R+ ++S GY D+P GDE L AV GPV++AIDA+ + QFYS G++Y+ CN
Sbjct: 212 RFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDE-LQFYSGGLFYDQTCN 270
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
+ L+H VLVVGYG+D NG DYW++KNSW + WG+ GY + RN
Sbjct: 271 QSDLNHGVLVVGYGSD-NGQDYWILKNSWGSGWGESGYWRQVRN 313
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 84/164 (51%), Gaps = 33/164 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M+ AF Y+ N GID+E +YPYE D NC
Sbjct: 185 MNDAFTYVAQNGGIDSEGAYPYEM-------------------------------ADGNC 213
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
Y + A GYV + DE L VAT GPV++A DA F YS GVYY P C
Sbjct: 214 HYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFDAD-DPFGSYSGGVYYNPTCE 272
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
+ + HAVL+VGYG +ENG DYWLVKNSW WG +GY K+ARN
Sbjct: 273 TNKFTHAVLIVGYG-NENGQDYWLVKNSWGDGWGLDGYFKIARN 315
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 80/134 (59%), Gaps = 32/134 (23%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
MD AFQY++DN G+D+E SYPYEA +++C
Sbjct: 70 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 98
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y S A D G+VDIP+ E L AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 99 KYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 157
Query: 121 STQLDHAVLVVGYG 134
S +DH VLVVGYG
Sbjct: 158 SEDMDHGVLVVGYG 171
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 80/134 (59%), Gaps = 32/134 (23%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
MD AFQY++DN G+D+E SYPYEA +++C
Sbjct: 70 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 98
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+Y S A D G+VDIP+ E L AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 99 KYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 157
Query: 121 STQLDHAVLVVGYG 134
S +DH VLVVGYG
Sbjct: 158 SEDMDHGVLVVGYG 171
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 90/164 (54%), Gaps = 30/164 (18%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
MD AF+YIK+N G+ TE++YPY A R C + N V D
Sbjct: 72 MDNAFEYIKNNGGLITEAAYPYRAA---------RGTC---NVARAAQNSPVVVHID--- 116
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
G+ D+P E L AVA PVS+A++AS ++F FYSEGV+ EC
Sbjct: 117 ------------GHQDVPANSEEDLARAVANQ-PVSVAVEASGKAFMFYSEGVFTG-ECG 162
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
T+LDH V VVGYG E+G YW VKNSW +WG++GYI++ ++
Sbjct: 163 -TELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKD 205
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENN---CGV 224
+ EC T+LDH V VVGYG E+G YW VKNSW +WG++GYI++ ++ + CG+
Sbjct: 157 FTGECG-TELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGI 215
Query: 225 ASSASFPL 232
A AS+P+
Sbjct: 216 AMEASYPV 223
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 88/173 (50%), Gaps = 35/173 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
MD AF++IK GI TE++YPYEA D C
Sbjct: 70 MDYAFEFIKQRGGITTEANYPYEAY-------------------------------DGTC 98
Query: 61 RYKRAKSGAVD-RGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPEC 119
+ + AV G+ ++PE DE L AVA PVS+AIDA FQFYSEGV+ C
Sbjct: 99 DVSKENAPAVSIDGHENVPENDENALLKAVANQ-PVSVAIDAGGSDFQFYSEGVFT-GSC 156
Query: 120 NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
T+LDH V +VGYGT +G YW VKNSW WG++GYI+M R E C
Sbjct: 157 -GTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLC 208
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 43/61 (70%), Gaps = 3/61 (4%)
Query: 175 TQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR---NRENNCGVASSASFP 231
T+LDH V +VGYGT +G YW VKNSW WG++GYI+M R ++E CG+A AS+P
Sbjct: 158 TELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYP 217
Query: 232 L 232
+
Sbjct: 218 I 218
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 110 bits (274), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 89/166 (53%), Gaps = 35/166 (21%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M+ AFQY+ D+ GI +E +YPY A D+ C
Sbjct: 76 MNDAFQYVLDSGGICSEDAYPYLAR-------------------------------DEEC 104
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
R + + G+ D+P E +KAA+A PVSIAI+A FQFY EGV+ + C
Sbjct: 105 RAQSCEKVVKILGFKDVPRRSEAAMKAALAK-SPVSIAIEADQMPFQFYHEGVF-DASCG 162
Query: 121 STQLDHAVLVVGYGTD-ENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
T LDH VL+VGYGTD E+ D+W++KNSW T WG +GY+ MA ++
Sbjct: 163 -TDLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHK 207
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 84/165 (50%), Gaps = 34/165 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M+ A+QY+K G++TESSYPY A+ + C
Sbjct: 161 MENAYQYLKQ-FGLETESSYPYTAV-------------------------------EGQC 188
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
RY + A G+ + G E +LK V GP ++A+D F Y G+Y C+
Sbjct: 189 RYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDV-ESDFMMYRSGIYQSQTCS 247
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
+++HAVL VGYGT + G DYW+VKNSW +WG+ GYI+M RNR
Sbjct: 248 PLRVNHAVLAVGYGT-QGGTDYWIVKNSWGLSWGERGYIRMVRNR 291
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNREN 220
M R+ +Y C+ +++HAVL VGYGT + G DYW+VKNSW +WG+ GYI+M RNR N
Sbjct: 235 MYRSGIYQSQTCSPLRVNHAVLAVGYGT-QGGTDYWIVKNSWGLSWGERGYIRMVRNRGN 293
Query: 221 NCGVASSASFPLV 233
CG+AS AS P+V
Sbjct: 294 MCGIASLASLPMV 306
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 93/164 (56%), Gaps = 34/164 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M FQ+I +N GI+TE++YPY T G N
Sbjct: 70 MTDGFQFIINNGGINTEANYPY-----------------------------TAEEGQCNL 100
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
++ K ++D Y ++P +E+ L+ AVA PVS+A++A+ +FQ YS G++ P C
Sbjct: 101 DLQQEKYVSIDT-YENVPYNNEWALQTAVA-YQPVSVALEAAGYNFQHYSSGIFTGP-C- 156
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
T +DHAV +VGYGT E G DYW+VKNSW TTWG+EGY+++ RN
Sbjct: 157 GTAVDHAVTIVGYGT-EGGIDYWIVKNSWGTTWGEEGYMRIQRN 199
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 45/60 (75%), Gaps = 3/60 (5%)
Query: 175 TQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRE--NNCGVASSASFPL 232
T +DHAV +VGYGT E G DYW+VKNSW TTWG+EGY+++ RN CG+A AS+P+
Sbjct: 158 TAVDHAVTIVGYGT-EGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 93/164 (56%), Gaps = 34/164 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M FQ+I +N GI+TE++YPY T G N
Sbjct: 70 MTDGFQFIINNGGINTEANYPY-----------------------------TAEEGQCNL 100
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
++ K ++D Y ++P +E+ L+ AVA PVS+A++A+ +FQ YS G++ P C
Sbjct: 101 DLQQEKYVSIDT-YENVPYNNEWALQTAVA-YQPVSVALEAAGYNFQHYSSGIFTGP-C- 156
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
T +DHAV +VGYGT E G DYW+VKNSW TTWG+EGY+++ RN
Sbjct: 157 GTAVDHAVTIVGYGT-EGGIDYWIVKNSWGTTWGEEGYMRIQRN 199
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 45/60 (75%), Gaps = 3/60 (5%)
Query: 175 TQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRE--NNCGVASSASFPL 232
T +DHAV +VGYGT E G DYW+VKNSW TTWG+EGY+++ RN CG+A AS+P+
Sbjct: 158 TAVDHAVTIVGYGT-EGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 34/164 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
+ FQ+I +N GI+TE +YPY A G+ N
Sbjct: 70 ITDGFQFIINNGGINTEENYPYTAQ-----------------------------DGECNV 100
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+ K +D Y ++P +E+ L+ AV T PVS+A+DA+ +F+ YS G++ P C
Sbjct: 101 DLQNEKYVTIDT-YENVPYNNEWALQTAV-TYQPVSVALDAAGDAFKQYSSGIFTGP-C- 156
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
T +DHAV +VGYGT E G DYW+VKNSW+TTWG+EGY+++ RN
Sbjct: 157 GTAIDHAVTIVGYGT-EGGIDYWIVKNSWDTTWGEEGYMRILRN 199
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 34/164 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
+ FQ+I ++ GI+TE +YPY A GD +
Sbjct: 70 ITDGFQFIINDGGINTEENYPYTAQ-----------------------------DGDCDV 100
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+ K +D Y ++P +E+ L+ AV T PVS+A+DA+ +F+ Y+ G++ P C
Sbjct: 101 ALQDQKYVTIDT-YENVPYNNEWALQTAV-TYQPVSVALDAAGDAFKQYASGIFTGP-C- 156
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
T +DHA+++VGYGT E G DYW+VKNSW+TTWG+EGY+++ RN
Sbjct: 157 GTAVDHAIVIVGYGT-EGGVDYWIVKNSWDTTWGEEGYMRILRN 199
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 47/60 (78%), Gaps = 3/60 (5%)
Query: 175 TQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN--RENNCGVASSASFPL 232
T +DHA+++VGYGT E G DYW+VKNSW+TTWG+EGY+++ RN CG+A+ S+P+
Sbjct: 158 TAVDHAIVIVGYGT-EGGVDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 36/177 (20%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M+ AFQYI N GIDT+ +YPY A+ +C
Sbjct: 68 MNNAFQYIITNGGIDTQQNYPYSAV-------------------------------QGSC 96
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+ R + +++ G+ + +E L++AVA+ PVS+ ++A+ FQ YS G++ P C
Sbjct: 97 KPYRLRVVSIN-GFQRVTRNNESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFTGP-CG 153
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQL 177
+ Q +H V++VGYGT ++G +YW+V+NSW WG++GYI M RN C QL
Sbjct: 154 TAQ-NHGVVIVGYGT-QSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQL 208
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENN---CGV 224
+ C + Q +H V++VGYGT ++G +YW+V+NSW WG++GYI M RN ++ CG+
Sbjct: 148 FTGPCGTAQ-NHGVVIVGYGT-QSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGI 205
Query: 225 ASSASFP 231
A S+P
Sbjct: 206 AQLPSYP 212
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 89/177 (50%), Gaps = 35/177 (19%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
M+ AFQ+I +N GI++E +YPY IC+ N V+
Sbjct: 70 MNPAFQFIVNNGGINSEETYPYRGQDG---------------ICNSTVNAPVVS------ 108
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+D Y ++P +E L+ AVA PVS+ +DA+ + FQ Y G++ CN
Sbjct: 109 ---------IDS-YENVPSHNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFTG-SCN 156
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQL 177
+HA+ VVGYGT EN D+W+VKNSW WG+ GYI+ RN + +C T+
Sbjct: 157 -ISANHALTVVGYGT-ENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRF 211
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 84/163 (51%), Gaps = 41/163 (25%)
Query: 1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
D+A+QYI N GIDTE++YPY+A P +++ + D C
Sbjct: 68 FDRAYQYIIANGGIDTEANYPYKAFQG--PCRAAKKVVRI-----------------DGC 108
Query: 61 RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
+ +P+ +E LK AVA+ P +AIDAS + FQ Y G++ P
Sbjct: 109 K--------------GVPQCNENALKNAVASQ-PSVVAIDASSKQFQHYKGGIFTGP--C 151
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
T+L+H V++VGYG DYW+V+NSW WG++GY +M R
Sbjct: 152 GTKLNHGVVIVGYG-----KDYWIVRNSWGRHWGEQGYTRMKR 189
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 81/160 (50%), Gaps = 41/160 (25%)
Query: 4 AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
A+QYI DN GIDTE++YPY+A+ CR
Sbjct: 71 AYQYIIDNGGIDTEANYPYKAVQG-------------------------------PCR-- 97
Query: 64 RAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQ 123
AK GY +P +E LK AVA+ P +AIDAS + FQ Y G++ P T+
Sbjct: 98 AAKKVVRIDGYKGVPHCNENALKKAVAS-QPSVVAIDASSKQFQHYKSGIFSGP--CGTK 154
Query: 124 LDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
L+H V++VGY DYW+V+NSW WG++GYI+M R
Sbjct: 155 LNHGVVIVGYW-----KDYWIVRNSWGRYWGEQGYIRMKR 189
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 38/178 (21%)
Query: 1 MDQAFQYI--KDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDD 58
M+ AF++I ++N + TE SYPY + P
Sbjct: 68 MNNAFEWIVQENNGAVYTEDSYPYASGEGISPP--------------------------- 100
Query: 59 NCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPE 118
C GA G+V++P+ DE ++ A +A GPV++A+DAS S+ Y+ GV
Sbjct: 101 -CTTSGHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTS-- 154
Query: 119 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR--NRVYYEPECNS 174
C S QLDH VL+VGY D YW++KNSW T WG+EGYI++A+ N+ + E +S
Sbjct: 155 CVSEQLDHGVLLVGY-NDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASS 211
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 172 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFP 231
C S QLDH VL+VGY D YW++KNSW T WG+EGYI++A+ N C V AS
Sbjct: 155 CVSEQLDHGVLLVGY-NDSAAVPYWIIKNSWTTQWGEEGYIRIAKGS-NQCLVKEEASSA 212
Query: 232 LV 233
+V
Sbjct: 213 VV 214
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 38/178 (21%)
Query: 1 MDQAFQYI--KDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDD 58
M+ AF++I ++N + TE SYPY + P
Sbjct: 68 MNNAFEWIVQENNGAVYTEDSYPYASGEGISPP--------------------------- 100
Query: 59 NCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPE 118
C GA G+V++P+ DE ++ A +A GPV++A+DAS S+ Y+ GV
Sbjct: 101 -CTTSGHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTS-- 154
Query: 119 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR--NRVYYEPECNS 174
C S QLDH VL+VGY D YW++KNSW T WG+EGYI++A+ N+ + E +S
Sbjct: 155 CVSEQLDHGVLLVGY-NDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASS 211
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 172 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFP 231
C S QLDH VL+VGY D YW++KNSW T WG+EGYI++A+ N C V AS
Sbjct: 155 CVSEQLDHGVLLVGY-NDGAAVPYWIIKNSWTTQWGEEGYIRIAKGS-NQCLVKEEASSA 212
Query: 232 LV 233
+V
Sbjct: 213 VV 214
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 38/178 (21%)
Query: 1 MDQAFQYI--KDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDD 58
M+ AF++I ++N + TE SYPY + P
Sbjct: 68 MNNAFEWIVQENNGAVYTEDSYPYASGEGISPP--------------------------- 100
Query: 59 NCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPE 118
C GA G+V++P+ DE ++ A +A GPV++A+DAS S+ Y+ GV
Sbjct: 101 -CTTSGHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTS-- 154
Query: 119 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR--NRVYYEPECNS 174
C S QLDH VL+VGY D YW++KNSW T WG+EGYI++A+ N+ + E +S
Sbjct: 155 CVSEQLDHGVLLVGY-NDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASS 211
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 172 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFP 231
C S QLDH VL+VGY D YW++KNSW T WG+EGYI++A+ N C V AS
Sbjct: 155 CVSEQLDHGVLLVGY-NDGAAVPYWIIKNSWTTQWGEEGYIRIAKGS-NQCLVKEEASSA 212
Query: 232 LV 233
+V
Sbjct: 213 VV 214
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 82/160 (51%), Gaps = 41/160 (25%)
Query: 4 AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
A+QYI +N GIDT+++YPY+A+ C S V++
Sbjct: 71 AYQYIINNGGIDTQANYPYKAVQG---------------PCQAASKVVSID--------- 106
Query: 64 RAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQ 123
GY +P +E LK AVA + P ++AIDAS FQ YS G++ P T+
Sbjct: 107 ---------GYNGVPFCNEXALKQAVA-VQPSTVAIDASSAQFQQYSSGIFSGP--CGTK 154
Query: 124 LDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
L+H V +VGY + YW+V+NSW WG++GYI+M R
Sbjct: 155 LNHGVTIVGYQAN-----YWIVRNSWGRYWGEKGYIRMLR 189
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 175 TQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFP 231
T+L+H V +VGY + YW+V+NSW WG++GYI+M R CG+ A P
Sbjct: 153 TKLNHGVTIVGYQAN-----YWIVRNSWGRYWGEKGYIRML--RVGGCGLCGIARLP 202
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 35/165 (21%)
Query: 3 QAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRY 62
QAF+YI+ N GI E +YPY+ DD+C++
Sbjct: 73 QAFEYIRYNKGIMGEDTYPYKGQ-------------------------------DDHCKF 101
Query: 63 KRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNST 122
+ K+ A + +I DE + AVA PVS A + ++ F Y +G+Y C+ T
Sbjct: 102 QPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTND-FLMYRKGIYSSTSCHKT 160
Query: 123 --QLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
+++HAVL VGYG +ENG YW+VKNSW WG GY + R +
Sbjct: 161 PDKVNHAVLAVGYG-EENGIPYWIVKNSWGPQWGMNGYFLIERGK 204
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 38/178 (21%)
Query: 1 MDQAFQYI--KDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDD 58
M+ AF++I ++N + TE SYPY + P
Sbjct: 68 MNNAFEWIVQENNGAVYTEDSYPYASGEGISPP--------------------------- 100
Query: 59 NCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPE 118
C GA G+V++P+ DE ++ A +A GPV++A+DAS S+ Y+ GV
Sbjct: 101 -CTTSGHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTS-- 154
Query: 119 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR--NRVYYEPECNS 174
C S LDH VL+VGY D YW++KNSW T WG+EGYI++A+ N+ + E +S
Sbjct: 155 CVSEALDHGVLLVGY-NDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASS 211
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 172 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFP 231
C S LDH VL+VGY D YW++KNSW T WG+EGYI++A+ N C V AS
Sbjct: 155 CVSEALDHGVLLVGY-NDSAAVPYWIIKNSWTTQWGEEGYIRIAKGS-NQCLVKEEASSA 212
Query: 232 LV 233
+V
Sbjct: 213 VV 214
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 36/165 (21%)
Query: 1 MDQAFQYIKDNHG--IDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDD 58
MD AF +I +++G + TE+SYPY V+
Sbjct: 68 MDNAFNWIVNSNGGNVFTEASYPY----------------------------VSGNGEQP 99
Query: 59 NCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPE 118
C+ + GA +VD+P+ DE + A +A GP++IA+DA+ SF Y+ G+
Sbjct: 100 QCQMNGHEIGAAITDHVDLPQ-DEDAIAAYLAENGPLAIAVDAT--SFMDYNGGILTS-- 154
Query: 119 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
C S QLDH VL+VGY D + YW++KNSW+ WG++GYI++ +
Sbjct: 155 CTSEQLDHGVLLVGY-NDASNPPYWIIKNSWSNMWGEDGYIRIEK 198
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 172 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFP 231
C S QLDH VL+VGY D + YW++KNSW+ WG++GYI++ + N C + + S
Sbjct: 155 CTSEQLDHGVLLVGY-NDASNPPYWIIKNSWSNMWGEDGYIRIEKGT-NQCLMNQAVSSA 212
Query: 232 LV 233
+V
Sbjct: 213 VV 214
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 37/166 (22%)
Query: 2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCR 61
D AF+++ N GI ++++YPY + D C
Sbjct: 69 DDAFRWVITNGGIASDANYPYTGV-------------------------------DGTCD 97
Query: 62 YKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYS-EGVYYEPEC- 119
+ + +D GY ++P L A PVS+ I S SFQ Y+ G++ C
Sbjct: 98 LNKPIAARID-GYTNVPNSSSALLDAVAKQ--PVSVNIYTSSTSFQLYTGPGIFAGSSCS 154
Query: 120 -NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
+ +DH VL+VGYG++ DYW+VKNSW T WG +GYI + RN
Sbjct: 155 DDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRN 200
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 71/161 (44%), Gaps = 41/161 (25%)
Query: 4 AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
+ QY+ DN G+ TE YPYE CR K
Sbjct: 71 SLQYVVDN-GVHTEREYPYEKKQG-------------------------------RCRAK 98
Query: 64 RAKSGAV-DRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNST 122
K V GY +P DE L A+A PVS+ D+ + FQFY G+Y P C T
Sbjct: 99 DKKGPKVYITGYKYVPANDEISLIQAIANQ-PVSVVTDSRGRGFQFYKGGIYEGP-CG-T 155
Query: 123 QLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
DHAV VGYG Y L+KNSW WG++GYI++ R
Sbjct: 156 NTDHAVTAVGYG-----KTYLLLKNSWGPNWGEKGYIRIKR 191
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 9/68 (13%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR---NRENNCGV 224
YE C T DHAV VGYG Y L+KNSW WG++GYI++ R + CGV
Sbjct: 149 YEGPCG-TNTDHAVTAVGYG-----KTYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGV 202
Query: 225 ASSASFPL 232
+S+ FP+
Sbjct: 203 YTSSFFPI 210
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 73/162 (45%), Gaps = 41/162 (25%)
Query: 4 AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
A QY+ N GI YPYE + CR
Sbjct: 71 ALQYVA-NSGIHLRQYYPYEGV-------------------------------QRQCRAS 98
Query: 64 RAKSGAVDR-GYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNST 122
+AK V G +P +E L +A I PVSI ++A ++FQ Y G++ P C T
Sbjct: 99 QAKGPKVKTDGVGRVPRNNEQALIQRIA-IQPVSIVVEAKGRAFQNYRGGIFAGP-CG-T 155
Query: 123 QLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
+DHAV VGYG NDY L+KNSW T WG+ GYI++ R
Sbjct: 156 SIDHAVAAVGYG-----NDYILIKNSWGTGWGEGGYIRIKRG 192
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 35/161 (21%)
Query: 4 AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
+ QY+ +N G+ T YPY+A Y K +V +T
Sbjct: 71 SLQYVANN-GVHTSKVYPYQAKQ------------YKCRATDKPGPKVKIT--------- 108
Query: 64 RAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQ 123
GY +P E A+A P+S+ ++A + FQ Y GV+ P C T+
Sbjct: 109 ---------GYKRVPSNXETSFLGALANQ-PLSVLVEAGGKPFQLYKSGVFDGP-CG-TK 156
Query: 124 LDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
LDHAV VGYGT + G +Y ++KNSW WG++GY+++ R
Sbjct: 157 LDHAVTAVGYGTSD-GKNYIIIKNSWGPNWGEKGYMRLKRQ 196
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Query: 175 TQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR---NRENNCGVASSASFP 231
T+LDHAV VGYGT + G +Y ++KNSW WG++GY+++ R N + CGV S+ +P
Sbjct: 155 TKLDHAVTAVGYGTSD-GKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYP 213
Query: 232 L 232
Sbjct: 214 F 214
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 37/163 (22%)
Query: 4 AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
A+ IK+ G++TE Y Y+ M +C++
Sbjct: 71 AYSAIKNLGGLETEDDYSYQGHM-------------------------------QSCQFS 99
Query: 64 RAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVY--YEPECNS 121
K+ + V++ + +E KL A +A GP+S+AI+A QFY G+ P C+
Sbjct: 100 AEKAKVYIQDSVELSQ-NEQKLAAWLAKRGPISVAINAF--GMQFYRHGISRPLRPLCSP 156
Query: 122 TQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
+DHAVL+VGYG + +W +KNSW T WG++GY + R
Sbjct: 157 WLIDHAVLLVGYGQRSD-VPFWAIKNSWGTDWGEKGYYYLHRG 198
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 169 EPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSA 228
P C+ +DHAVL+VGYG + +W +KNSW T WG++GY + R CGV + A
Sbjct: 151 RPLCSPWLIDHAVLLVGYGQRSD-VPFWAIKNSWGTDWGEKGYYYLHRG-SGACGVNTMA 208
Query: 229 SFPLV 233
S +V
Sbjct: 209 SSAVV 213
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 51/72 (70%), Gaps = 4/72 (5%)
Query: 94 PVSIAIDASHQSFQFYSEGVYYEPECNST-QLDHAVLVVGYGTDENGNDYWLVKNSWNTT 152
P+S++IDA + F FYS G+Y C+S ++H VL+VGYG+ E+G DYW+ KNSW
Sbjct: 137 PISVSIDA--KDFHFYSGGIYDGGNCSSPYGINHFVLIVGYGS-EDGVDYWIAKNSWGED 193
Query: 153 WGDEGYIKMARN 164
WG +GYI++ RN
Sbjct: 194 WGIDGYIRIQRN 205
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 5/72 (6%)
Query: 166 VYYEPECNST-QLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNREN---N 221
+Y C+S ++H VL+VGYG+ E+G DYW+ KNSW WG +GYI++ RN N
Sbjct: 154 IYDGGNCSSPYGINHFVLIVGYGS-EDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGV 212
Query: 222 CGVASSASFPLV 233
CG+ AS+P++
Sbjct: 213 CGMNYFASYPII 224
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 15/130 (11%)
Query: 53 VTSGDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEG 112
V++ + C KR + YV IP+ K K A+ +GP+SI+I AS F FY G
Sbjct: 109 VSNLPETCNLKRCNERYTIKSYVSIPDD---KFKEALRYLGPISISIAAS-DDFAFYRGG 164
Query: 113 VYYEPECNSTQLDHAVLVVGYGTDENGND---------YWLVKNSWNTTWGDEGYIKMAR 163
+Y+ EC + +HAV++VGYG + N+ Y+++KNSW + WG+ GYI +
Sbjct: 165 -FYDGECGAAP-NHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLET 222
Query: 164 NRVYYEPECN 173
+ Y+ C+
Sbjct: 223 DENGYKKTCS 232
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 13/79 (16%)
Query: 167 YYEPECNSTQLDHAVLVVGYGTDENGND---------YWLVKNSWNTTWGDEGYIKMARN 217
+Y+ EC + +HAV++VGYG + N+ Y+++KNSW + WG+ GYI + +
Sbjct: 165 FYDGECGAAP-NHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETD 223
Query: 218 R---ENNCGVASSASFPLV 233
+ C + + A PL+
Sbjct: 224 ENGYKKTCSIGTEAYVPLL 242
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 15/118 (12%)
Query: 53 VTSGDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEG 112
V+ + C R + Y+ +P+ KLK A+ +GP+SI++ S F FY EG
Sbjct: 107 VSDAPNLCNIDRCTEKYGIKNYLSVPDN---KLKEALRFLGPISISVAVS-DDFAFYKEG 162
Query: 113 VYYEPECNSTQLDHAVLVVGYGTDENGND---------YWLVKNSWNTTWGDEGYIKM 161
++ + EC QL+HAV++VG+G E N Y+++KNSW WG+ G+I +
Sbjct: 163 IF-DGECGD-QLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINI 218
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGND---------YWLVKNSWNTTWGDEGYIKMARNR 218
++ EC QL+HAV++VG+G E N Y+++KNSW WG+ G+I + +
Sbjct: 164 FDGECGD-QLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDE 222
Query: 219 E---NNCGVASSASFPLV 233
CG+ + A PL+
Sbjct: 223 SGLMRKCGLGTDAFIPLI 240
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 15/118 (12%)
Query: 53 VTSGDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEG 112
V+ + C R + Y+ +P+ KLK A+ +GP+SI++ S F FY EG
Sbjct: 106 VSDAPNLCNIDRCTEKYGIKNYLSVPDN---KLKEALRFLGPISISVAVS-DDFAFYKEG 161
Query: 113 VYYEPECNSTQLDHAVLVVGYGTDENGND---------YWLVKNSWNTTWGDEGYIKM 161
++ + EC QL+HAV++VG+G E N Y+++KNSW WG+ G+I +
Sbjct: 162 IF-DGECGD-QLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINI 217
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGND---------YWLVKNSWNTTWGDEGYIKMARNR 218
++ EC QL+HAV++VG+G E N Y+++KNSW WG+ G+I + +
Sbjct: 163 FDGECGD-QLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDE 221
Query: 219 EN---NCGVASSASFPLV 233
CG+ + A PL+
Sbjct: 222 SGLMRKCGLGTDAFIPLI 239
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 7/89 (7%)
Query: 81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYY-----EPECNSTQLDHAVLVVGYGT 135
+E +K + GP+++A + + F Y +G+Y+ +P +HAVL+VGYGT
Sbjct: 332 NEALMKLELVHHGPMAVAFEV-YDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGT 390
Query: 136 DE-NGNDYWLVKNSWNTTWGDEGYIKMAR 163
D +G DYW+VKNSW T WG+ GY ++ R
Sbjct: 391 DSASGMDYWIVKNSWGTGWGENGYFRIRR 419
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 178 DHAVLVVGYGTDE-NGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSA 228
+HAVL+VGYGTD +G DYW+VKNSW T WG+ GY ++ R + C + S A
Sbjct: 380 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTD-ECAIESIA 430
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYY-----EPECNSTQLDHAVLVVGYGT 135
+E +K + GP+++A + H F Y G+Y+ +P +HAVL+VGYG
Sbjct: 331 NEALMKLELVKHGPMAVAFEV-HDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGK 389
Query: 136 DE-NGNDYWLVKNSWNTTWGDEGYIKMAR 163
D G DYW+VKNSW + WG+ GY ++ R
Sbjct: 390 DPVTGLDYWIVKNSWGSQWGESGYFRIRR 418
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 178 DHAVLVVGYGTDE-NGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSA 228
+HAVL+VGYG D G DYW+VKNSW + WG+ GY ++ R + C + S A
Sbjct: 379 NHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRG-TDECAIESIA 429
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 7/70 (10%)
Query: 94 PVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTW 153
PVS+ ++A+ + FQ Y G++ P N ++DHAV VGYG + Y L+KNSW T W
Sbjct: 129 PVSVVLEAAGKDFQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGW 181
Query: 154 GDEGYIKMAR 163
G+ GYI++ R
Sbjct: 182 GENGYIRIKR 191
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 10/77 (12%)
Query: 159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 218
++ R ++ P N ++DHAV VGYG + Y L+KNSW T WG+ GYI++ R
Sbjct: 141 FQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRGT 193
Query: 219 ENN---CGVASSASFPL 232
N+ CG+ +S+ +P+
Sbjct: 194 GNSYGVCGLYTSSFYPV 210
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 7/70 (10%)
Query: 94 PVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTW 153
PVS+ ++A+ + FQ Y G++ P N ++DHAV VGYG + Y L+KNSW T W
Sbjct: 129 PVSVVLEAAGKDFQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGW 181
Query: 154 GDEGYIKMAR 163
G+ GYI++ R
Sbjct: 182 GENGYIRIKR 191
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 10/77 (12%)
Query: 159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 218
++ R ++ P N ++DHAV VGYG + Y L+KNSW T WG+ GYI++ R
Sbjct: 141 FQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRGT 193
Query: 219 ENN---CGVASSASFPL 232
N+ CG+ +S+ +P+
Sbjct: 194 GNSYGVCGLYTSSFYPV 210
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 7/70 (10%)
Query: 94 PVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTW 153
PVS+ ++A+ + FQ Y G++ P N ++DHAV VGYG + Y L+KNSW T W
Sbjct: 129 PVSVVLEAAGKDFQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGW 181
Query: 154 GDEGYIKMAR 163
G+ GYI++ R
Sbjct: 182 GENGYIRIKR 191
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 10/77 (12%)
Query: 159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 218
++ R ++ P N ++DHAV VGYG + Y L+KNSW T WG+ GYI++ R
Sbjct: 141 FQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRGT 193
Query: 219 ENN---CGVASSASFPL 232
N+ CG+ +S+ +P+
Sbjct: 194 GNSYGVCGLYTSSFYPV 210
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 7/70 (10%)
Query: 94 PVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTW 153
PVS+ + A+ + FQ Y G++ P N ++DHAV VGYG + Y L+KNSW T W
Sbjct: 129 PVSVVLQAAGKDFQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGW 181
Query: 154 GDEGYIKMAR 163
G+ GYI++ R
Sbjct: 182 GENGYIRIKR 191
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 10/77 (12%)
Query: 159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 218
++ R ++ P N ++DHAV VGYG + Y L+KNSW T WG+ GYI++ R
Sbjct: 141 FQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRGT 193
Query: 219 ENN---CGVASSASFPL 232
N+ CG+ +S+ +P+
Sbjct: 194 GNSYGVCGLYTSSFYPV 210
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 7/70 (10%)
Query: 94 PVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTW 153
PVS+ + A+ + FQ Y G++ P N ++DHAV VGYG + Y L+KNSW T W
Sbjct: 129 PVSVVLQAAGKDFQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGW 181
Query: 154 GDEGYIKMAR 163
G+ GYI++ R
Sbjct: 182 GENGYIRIKR 191
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 10/77 (12%)
Query: 159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 218
++ R ++ P N ++DHAV VGYG + Y L+KNSW T WG+ GYI++ R
Sbjct: 141 FQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRGT 193
Query: 219 ENN---CGVASSASFPL 232
N+ CG+ +S+ +P+
Sbjct: 194 GNSYGVCGLYTSSFYPV 210
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 7/70 (10%)
Query: 94 PVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTW 153
PVS+ + A+ + FQ Y G++ P N ++DHAV VGYG + Y L+KNSW T W
Sbjct: 129 PVSVVLQAAGKDFQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGW 181
Query: 154 GDEGYIKMAR 163
G+ GYI++ R
Sbjct: 182 GENGYIRIKR 191
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 10/77 (12%)
Query: 159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 218
++ R ++ P N ++DHAV VGYG + Y L+KNSW T WG+ GYI++ R
Sbjct: 141 FQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRGT 193
Query: 219 ENN---CGVASSASFPL 232
N+ CG+ +S+ +P+
Sbjct: 194 GNSYGVCGLYTSSFYPV 210
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 7/70 (10%)
Query: 94 PVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTW 153
PVS+ ++A+ + FQ Y G++ P N ++DHAV VGYG + Y L++NSW T W
Sbjct: 280 PVSVVLEAAGKDFQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIRNSWGTGW 332
Query: 154 GDEGYIKMAR 163
G+ GYI++ R
Sbjct: 333 GENGYIRIKR 342
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 10/77 (12%)
Query: 159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 218
++ R ++ P N ++DHAV VGYG + Y L++NSW T WG+ GYI++ R
Sbjct: 292 FQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIRNSWGTGWGENGYIRIKRGT 344
Query: 219 ENN---CGVASSASFPL 232
N+ CG+ +S+ +P+
Sbjct: 345 GNSYGVCGLYTSSFYPV 361
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 33/41 (80%)
Query: 193 NDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
N YWLVKNSW WG GY+KMA++R N+CG+AS+AS+P V
Sbjct: 2 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 42
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 140 NDYWLVKNSWNTTWGDEGYIKMARNR 165
N YWLVKNSW WG GY+KMA++R
Sbjct: 2 NKYWLVKNSWGEEWGMGGYVKMAKDR 27
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGN 140
+E ++ A + GPV A + F Y GVY HA+ ++G+G ENG
Sbjct: 156 NEKEIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHVS-GEIMGGHAIRILGWGV-ENGT 212
Query: 141 DYWLVKNSWNTTWGDEGYIKMARNR 165
YWLV NSWNT WGD G+ K+ R +
Sbjct: 213 PYWLVANSWNTDWGDNGFFKILRGQ 237
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
HA+ ++G+G ENG YWLV NSWNT WGD G+ K+ R +++CG+ S
Sbjct: 199 HAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRG-QDHCGIES 244
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGN 140
+E ++ A + GPV A + F Y GVY HA+ ++G+G ENG
Sbjct: 156 NEKEIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHVS-GEIMGGHAIRILGWGV-ENGT 212
Query: 141 DYWLVKNSWNTTWGDEGYIKMARNR 165
YWLV NSWNT WGD G+ K+ R +
Sbjct: 213 PYWLVGNSWNTDWGDNGFFKILRGQ 237
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
HA+ ++G+G ENG YWLV NSWNT WGD G+ K+ R +++CG+ S
Sbjct: 199 HAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRG-QDHCGIES 244
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGN 140
+E ++ A + GPV A + F Y GVY HA+ ++G+G ENG
Sbjct: 108 NEKEIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHVS-GEIMGGHAIRILGWGV-ENGT 164
Query: 141 DYWLVKNSWNTTWGDEGYIKMARNR 165
YWLV NSWNT WGD G+ K+ R +
Sbjct: 165 PYWLVGNSWNTDWGDNGFFKILRGQ 189
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
HA+ ++G+G ENG YWLV NSWNT WGD G+ K+ R ++ +CG+ S
Sbjct: 151 HAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRGQD-HCGIES 196
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGND 141
E + A + GPV A + F Y GVY + HA+ ++G+G ENG
Sbjct: 220 EKDIMAEIYKNGPVEGAFSV-YSDFLLYKSGVY-QHVTGEMMGGHAIRILGWGV-ENGTP 276
Query: 142 YWLVKNSWNTTWGDEGYIKMARNR 165
YWLV NSWNT WGD G+ K+ R +
Sbjct: 277 YWLVANSWNTDWGDNGFFKILRGQ 300
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
HA+ ++G+G ENG YWLV NSWNT WGD G+ K+ R +++CG+ S
Sbjct: 262 HAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRG-QDHCGIES 307
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGND 141
E + A + GPV A + F Y GVY HA+ ++G+G ENG
Sbjct: 159 EKDIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHVT-GEMMGGHAIRILGWGV-ENGTP 215
Query: 142 YWLVKNSWNTTWGDEGYIKMARNR 165
YWLV NSWNT WGD G+ K+ R +
Sbjct: 216 YWLVANSWNTDWGDNGFFKILRGQ 239
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
HA+ ++G+G ENG YWLV NSWNT WGD G+ K+ R +++CG+ S
Sbjct: 201 HAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRG-QDHCGIES 246
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 178 DHAVLVVGYGTDE-NGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSA 228
+HAVL+VGYGTD +G DYW+VKNSW T WG+ GY ++ R + C + S A
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTD-ECAIESIA 60
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%), Gaps = 1/40 (2%)
Query: 125 DHAVLVVGYGTDE-NGNDYWLVKNSWNTTWGDEGYIKMAR 163
+HAVL+VGYGTD +G DYW+VKNSW T WG+ GY ++ R
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRR 49
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGND 141
E + A + GPV A + F Y GVY + HA+ ++G+G ENG
Sbjct: 108 EKDIMAEIYKNGPVEGAFSV-YSDFLLYKSGVY-QHVTGEMMGGHAIRILGWGV-ENGTP 164
Query: 142 YWLVKNSWNTTWGDEGYIKMARNR 165
YWLV NSWNT WGD G+ K+ R +
Sbjct: 165 YWLVANSWNTDWGDNGFFKILRGQ 188
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
HA+ ++G+G ENG YWLV NSWNT WGD G+ K+ R +++CG+ S
Sbjct: 150 HAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRG-QDHCGIES 195
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGND 141
E + A + GPV A + F Y GVY HA+ ++G+G ENG
Sbjct: 157 EKDIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHVT-GEMMGGHAIRILGWGV-ENGTP 213
Query: 142 YWLVKNSWNTTWGDEGYIKMARNR 165
YWLV NSWNT WGD G+ K+ R +
Sbjct: 214 YWLVANSWNTDWGDNGFFKILRGQ 237
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
HA+ ++G+G ENG YWLV NSWNT WGD G+ K+ R +++CG+ S
Sbjct: 199 HAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRG-QDHCGIES 244
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGND 141
E + A + GPV A + F Y GVY HA+ ++G+G ENG
Sbjct: 158 EKDIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHVT-GEMMGGHAIRILGWGV-ENGTP 214
Query: 142 YWLVKNSWNTTWGDEGYIKMARNR 165
YWLV NSWNT WGD G+ K+ R +
Sbjct: 215 YWLVANSWNTDWGDNGFFKILRGQ 238
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
HA+ ++G+G ENG YWLV NSWNT WGD G+ K+ R +++CG+ S
Sbjct: 200 HAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRG-QDHCGIES 245
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGND 141
E + A + GPV A + F Y GVY + HA+ ++G+G ENG
Sbjct: 163 EKDIMAEIYKNGPVEGAFSV-YSDFLLYKSGVY-QHVTGEMMGGHAIRILGWGV-ENGTP 219
Query: 142 YWLVKNSWNTTWGDEGYIKMARNR 165
YWLV NSWNT WGD G+ K+ R +
Sbjct: 220 YWLVANSWNTDWGDNGFFKILRGQ 243
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
HA+ ++G+G ENG YWLV NSWNT WGD G+ K+ R +++CG+ S
Sbjct: 205 HAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRG-QDHCGIES 250
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 70/161 (43%), Gaps = 37/161 (22%)
Query: 4 AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
A +Y+ N GI S YPY+A CR K
Sbjct: 71 ALEYVAKN-GIHLRSKYPYKAK-------------------------------QGTCRAK 98
Query: 64 RAKSGAVD-RGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNST 122
+ V G + +E L A+A PVS+ +++ + FQ Y G++ P C T
Sbjct: 99 QVGGPIVKTSGVGRVQPNNEGNLLNAIAKQ-PVSVVVESKGRPFQLYKGGIFEGP-CG-T 155
Query: 123 QLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
++DHAV VGYG L+KNSW T WG++GYI++ R
Sbjct: 156 KVDHAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKR 195
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR---NRENNCGV 224
+E C T++DHAV VGYG L+KNSW T WG++GYI++ R N CG+
Sbjct: 149 FEGPCG-TKVDHAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKRAPGNSPGVCGL 206
Query: 225 ASSASFP 231
S+ +P
Sbjct: 207 YKSSYYP 213
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
Y+ E HA+ ++G+G ENG YWLV NSWN WGD G+ K+ R EN+CG+ S
Sbjct: 250 YKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKILRG-ENHCGIES 306
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGND 141
E ++ A + GPV A F Y GVY + E HA+ ++G+G ENG
Sbjct: 219 EKEIMAEIYKNGPVEGAFTV-FSDFLTYKSGVY-KHEAGDVMGGHAIRILGWGI-ENGVP 275
Query: 142 YWLVKNSWNTTWGDEGYIKMAR 163
YWLV NSWN WGD G+ K+ R
Sbjct: 276 YWLVANSWNADWGDNGFFKILR 297
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
Y+ E HA+ ++G+G ENG YWLV NSWN WGD G+ K+ R EN+CG+ S
Sbjct: 194 YKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKILRG-ENHCGIES 250
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGND 141
E ++ A + GPV A F Y GVY + E HA+ ++G+G ENG
Sbjct: 163 EKEIMAEIYKNGPVEGAFTV-FSDFLTYKSGVY-KHEAGDVMGGHAIRILGWGI-ENGVP 219
Query: 142 YWLVKNSWNTTWGDEGYIKMARNR 165
YWLV NSWN WGD G+ K+ R
Sbjct: 220 YWLVANSWNADWGDNGFFKILRGE 243
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
Y+ E HA+ ++G+G ENG YWLV NSWN WGD G+ K+ R EN+CG+ S
Sbjct: 188 YKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKILRG-ENHCGIES 244
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGND 141
E ++ A + GPV A F Y GVY + E HA+ ++G+G ENG
Sbjct: 157 EKEIMAEIYKNGPVEGAFTV-FSDFLTYKSGVY-KHEAGDVMGGHAIRILGWGI-ENGVP 213
Query: 142 YWLVKNSWNTTWGDEGYIKMARNR 165
YWLV NSWN WGD G+ K+ R
Sbjct: 214 YWLVANSWNADWGDNGFFKILRGE 237
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 37/161 (22%)
Query: 4 AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
A +Y+ N GI S YPY+A CR K
Sbjct: 71 ALEYVAKN-GIHLRSKYPYKAK-------------------------------QGTCRAK 98
Query: 64 RAKSGAVD-RGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNST 122
+ V G + +E L A+A PVS+ +++ + FQ Y G++ P C T
Sbjct: 99 QVGGPIVKTSGVGRVQPNNEGNLLNAIAKQ-PVSVVVESKGRPFQLYKGGIFEGP-CG-T 155
Query: 123 QLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
+++HAV VGYG L+KNSW T WG++GYI++ R
Sbjct: 156 KVEHAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKR 195
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR---NRENNCGV 224
+E C T+++HAV VGYG L+KNSW T WG++GYI++ R N CG+
Sbjct: 149 FEGPCG-TKVEHAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKRAPGNSPGVCGL 206
Query: 225 ASSASFP 231
S+ +P
Sbjct: 207 YKSSYYP 213
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 12 HGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVD 71
HGI E+ Y+A F C CH N GD R K
Sbjct: 86 HGIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREK----- 140
Query: 72 RGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVV 131
+ A + GP+S I A+ + Y+ G+Y E + ++T ++H V V
Sbjct: 141 -------------MMAEIYANGPISCGIMAT-ERLANYTGGIYAEYQ-DTTYINHVVSVA 185
Query: 132 GYGTDENGNDYWLVKNSWNTTWGDEGYIKM 161
G+G + G +YW+V+NSW WG+ G++++
Sbjct: 186 GWGISD-GTEYWIVRNSWGEPWGERGWLRI 214
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 173 NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM 214
++T ++H V V G+G + G +YW+V+NSW WG+ G++++
Sbjct: 174 DTTYINHVVSVAGWGISD-GTEYWIVRNSWGEPWGERGWLRI 214
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGN 140
DE ++ + GPV ++ F Y G+Y T HA+ ++G+G EN
Sbjct: 158 DEKAIQKEIMKYGPVEAGFTV-YEDFLNYKSGIYKHIT-GETLGGHAIRIIGWGV-ENKA 214
Query: 141 DYWLVKNSWNTTWGDEGYIKMARNR 165
YWL+ NSWN WG+ GY ++ R R
Sbjct: 215 PYWLIANSWNEDWGENGYFRIVRGR 239
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSAS 229
HA+ ++G+G EN YWL+ NSWN WG+ GY ++ R R + C + S +
Sbjct: 201 HAIRIIGWGV-ENKAPYWLIANSWNEDWGENGYFRIVRGR-DECSIESEVT 249
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 12 HGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVD 71
HGI E+ Y+A F C CH N GD R K
Sbjct: 121 HGIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREK----- 175
Query: 72 RGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVV 131
+ A + GP+S I A+ + Y+ G+Y E + ++T ++H V V
Sbjct: 176 -------------MMAEIYANGPISCGIMAT-ERLANYTGGIYAEYQ-DTTYINHVVSVA 220
Query: 132 GYGTDENGNDYWLVKNSWNTTWGDEGYIKM 161
G+G + G +YW+V+NSW WG+ G++++
Sbjct: 221 GWGISD-GTEYWIVRNSWGEPWGERGWLRI 249
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 173 NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM 214
++T ++H V V G+G + G +YW+V+NSW WG+ G++++
Sbjct: 209 DTTYINHVVSVAGWGISD-GTEYWIVRNSWGEPWGERGWLRI 249
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 69/161 (42%), Gaps = 37/161 (22%)
Query: 4 AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
A +Y+ N GI S YPY+A CR K
Sbjct: 177 ALEYVAKN-GIHLRSKYPYKAKQG-------------------------------TCRAK 204
Query: 64 RAKSGAVD-RGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNST 122
+ V G + +E L A+A PVS+ +++ + FQ Y G++ P C T
Sbjct: 205 QVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGP-C-GT 261
Query: 123 QLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
++D AV VGYG L+KNSW T WG++GYI++ R
Sbjct: 262 KVDGAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKR 301
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR---NRENNCGV 224
+E C T++D AV VGYG L+KNSW T WG++GYI++ R N CG+
Sbjct: 255 FEGPC-GTKVDGAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKRAPGNSPGVCGL 312
Query: 225 ASSASFP 231
S+ +P
Sbjct: 313 YKSSYYP 319
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 29/33 (87%), Gaps = 1/33 (3%)
Query: 126 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGY 158
HAV +VGYG+ + G+DYW+V+NSW+TTWGD GY
Sbjct: 171 HAVNIVGYGSTQ-GDDYWIVRNSWDTTWGDSGY 202
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 29/33 (87%), Gaps = 1/33 (3%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGY 211
HAV +VGYG+ + G+DYW+V+NSW+TTWGD GY
Sbjct: 171 HAVNIVGYGSTQ-GDDYWIVRNSWDTTWGDSGY 202
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 35/160 (21%)
Query: 4 AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
+ QY+ N GI + YPY A ++ C R+NQV
Sbjct: 71 SLQYVAQN-GIHLRAKYPYIAK---------QQTC--------RANQVG---------GP 103
Query: 64 RAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQ 123
+ K+ V R + +E L A+A PVS+ ++++ + FQ Y G++ E C T+
Sbjct: 104 KVKTNGVGR----VQSNNEGSLLNAIAH-QPVSVVVESAGRDFQNYKGGIF-EGSC-GTK 156
Query: 124 LDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
+DHAV VGYG L+KNSW WG+ GYI++ R
Sbjct: 157 VDHAVTAVGYGKSGGKGYI-LIKNSWGPGWGENGYIRIRR 195
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENN---CGV 224
+E C T++DHAV VGYG L+KNSW WG+ GYI++ R N+ CGV
Sbjct: 149 FEGSC-GTKVDHAVTAVGYGKSGGKGYI-LIKNSWGPGWGENGYIRIRRASGNSPGVCGV 206
Query: 225 ASSASFPL 232
S+ +P+
Sbjct: 207 YRSSYYPI 214
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 93 GPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTT 152
GP +A D ++ F Y+ GVY+ HAV +VG+GT NG YW + NSWNT
Sbjct: 251 GPFEVAFDV-YEDFIAYNSGVYHHVS-GQYLGGHAVRLVGWGT-SNGVPYWKIANSWNTE 307
Query: 153 WGDEGYIKMAR 163
WG +GY + R
Sbjct: 308 WGMDGYFLIRR 318
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGV--ASSASFPLV 233
HAV +VG+GT NG YW + NSWNT WG +GY + R + CG+ SA PL
Sbjct: 282 HAVRLVGWGT-SNGVPYWKIANSWNTEWGMDGYF-LIRRGSSECGIEDGGSAGIPLA 336
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 93 GPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTT 152
GP +A D ++ F Y+ GVY+ HAV +VG+GT NG YW + NSWNT
Sbjct: 229 GPFEVAFDV-YEDFIAYNSGVYHHVS-GQYLGGHAVRLVGWGT-SNGVPYWKIANSWNTE 285
Query: 153 WGDEGYIKMAR 163
WG +GY + R
Sbjct: 286 WGMDGYFLIRR 296
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGV--ASSASFPLV 233
HAV +VG+GT NG YW + NSWNT WG +GY + R + CG+ SA PL
Sbjct: 260 HAVRLVGWGT-SNGVPYWKIANSWNTEWGMDGYF-LIRRGSSECGIEDGGSAGIPLA 314
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 93 GPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTT 152
GP +A D ++ F Y+ GVY+ HAV +VG+GT NG YW + NSWNT
Sbjct: 228 GPFEVAFDV-YEDFIAYNSGVYHHVS-GQYLGGHAVRLVGWGT-SNGVPYWKIANSWNTE 284
Query: 153 WGDEGYIKMAR 163
WG +GY + R
Sbjct: 285 WGMDGYFLIRR 295
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGV--ASSASFPLV 233
HAV +VG+GT NG YW + NSWNT WG +GY + R + CG+ SA PL
Sbjct: 259 HAVRLVGWGT-SNGVPYWKIANSWNTEWGMDGYF-LIRRGSSECGIEDGGSAGIPLA 313
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 85 LKAAVATIGPVSIAIDASH-QSFQFYSEGVYYEPECNSTQLDHAVLVVGYG----TDENG 139
+K V G V I A + ++F + V + C DHAV +VGYG ++
Sbjct: 159 IKTEVMNKGSVIAYIKAENVMGYEFSGKKV--QNLCGDDTADHAVNIVGYGNYVNSEGEK 216
Query: 140 NDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLV 183
YW+V+NSW WGDEGY K+ Y P H+V++
Sbjct: 217 KSYWIVRNSWGPYWGDEGYFKVDM----YGPTHCHFNFIHSVVI 256
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 172 CNSTQLDHAVLVVGYG----TDENGNDYWLVKNSWNTTWGDEGYIKM 214
C DHAV +VGYG ++ YW+V+NSW WGDEGY K+
Sbjct: 192 CGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 85 LKAAVATIGPVSIAIDASH-QSFQFYSEGVYYEPECNSTQLDHAVLVVGYG----TDENG 139
+K V G V I A + ++F + V + C DHAV +VGYG ++
Sbjct: 160 IKTEVMNKGSVIAYIKAENVMGYEFSGKKV--KNLCGDDTADHAVNIVGYGNYVNSEGEK 217
Query: 140 NDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLV 183
YW+V+NSW WGDEGY K+ Y P H+V++
Sbjct: 218 KSYWIVRNSWGPYWGDEGYFKVDM----YGPTHCHFNFIHSVVI 257
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 172 CNSTQLDHAVLVVGYG----TDENGNDYWLVKNSWNTTWGDEGYIKM 214
C DHAV +VGYG ++ YW+V+NSW WGDEGY K+
Sbjct: 193 CGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 126 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
HAV +VGY ++ G DYW+V+NSW+T WGD GY A N
Sbjct: 250 HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAAN 287
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 217
HAV +VGY ++ G DYW+V+NSW+T WGD GY A N
Sbjct: 250 HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAAN 287
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 126 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
HAV +VGY ++ G DYW+V+NSW+T WGD GY A N
Sbjct: 170 HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAAN 207
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 217
HAV +VGY ++ G DYW+V+NSW+T WGD GY A N
Sbjct: 170 HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAAN 207
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 126 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
HAV +VGY ++ G DYW+V+NSW+T WGD GY A N
Sbjct: 170 HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAAN 207
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 217
HAV +VGY ++ G DYW+V+NSW+T WGD GY A N
Sbjct: 170 HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAAN 207
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 126 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
HAV +VGY ++ G DYW+V+NSW+T WGD GY A N
Sbjct: 170 HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAAN 207
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 217
HAV +VGY ++ G DYW+V+NSW+T WGD GY A N
Sbjct: 170 HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAAN 207
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 125 DHAVLVVGYGTDENGNDYWLVKNSWNT 151
DH + G D+ GN+Y+ VKNSW T
Sbjct: 317 DHGXQIYGIAKDQEGNEYYXVKNSWGT 343
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 178 DHAVLVVGYGTDENGNDYWLVKNSWNT 204
DH + G D+ GN+Y+ VKNSW T
Sbjct: 317 DHGXQIYGIAKDQEGNEYYXVKNSWGT 343
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVA 225
HAVL VGY ++ ++ ++NSW G++GY M +N +A
Sbjct: 237 HAVLCVGY---DDEIRHFRIRNSWGNNVGEDGYFWMPYEYISNTQLA 280
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 23/74 (31%)
Query: 126 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVG 185
HAVL VGY ++ ++ ++NSW G++GY M + ++TQL
Sbjct: 237 HAVLCVGY---DDEIRHFRIRNSWGNNVGEDGYFWMPYEYI------SNTQL-------- 279
Query: 186 YGTDENGNDYWLVK 199
+D+W++K
Sbjct: 280 ------ADDFWVIK 287
>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g
Cap
pdb|3M94|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With
M2,2,7g Cap
Length = 189
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 139 GNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVL-----VVGYGTDENG 192
G+DY+L K W DE +K R V + + + LDH L ++G ++NG
Sbjct: 54 GSDYYLFKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNG 112
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 102 SHQSFQFYSEGVYYEPECNSTQLD-HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK 160
S Q+ F + Y+P +S D + +GYG D + + L K+ T G G
Sbjct: 52 SDQTADFCKQKGTYDPSGSSASQDLNTPFSIGYG-DGSSSQGTLYKD----TVGFGGV-- 104
Query: 161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDY 195
+N+V + +ST +D +L VGY T+E G Y
Sbjct: 105 SIKNQVL--ADVDSTSIDQGILGVGYKTNEAGGSY 137
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 102 SHQSFQFYSEGVYYEPECNSTQLD-HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK 160
S Q+ F + Y+P +S D + +GYG D + + L K+ T G G
Sbjct: 52 SDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYG-DGSSSQGTLYKD----TVGFGGV-- 104
Query: 161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDY 195
+N+V + +ST +D +L VGY T+E G Y
Sbjct: 105 SIKNQVL--ADVDSTSIDQGILGVGYKTNEAGGSY 137
>pdb|3UWC|A Chain A, Structure Of An Aminotransferase (Degt-Dnrj-Eryc1-Strs
Family) From Coxiella Burnetii In Complex With Pmp
Length = 374
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 2 DQAFQYIKDNHGIDTESSYP 21
DQ FQY+KDN GI+ + YP
Sbjct: 296 DQLFQYLKDN-GIEVKIHYP 314
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,942,224
Number of Sequences: 62578
Number of extensions: 350572
Number of successful extensions: 1233
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 300
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)